TogoWS: world method list

This database contains a list of methods provided by worldwide bioinformatics web services including BioMoby with assignments of the category and input/output data types.
4172 Found
Columns ... 1 2 3 .. 279

Provider portType Operation TogoWS category Moby service class Doc description

BioMoby: moby.ucalgary.ca

ABIChromatogramToDNASequencePortType

ABIChromatogramToDNASequence

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[FormatConversion] Reads ABI file and display the trace
Show
ABIChromatogramToDNASequence

BioMoby: moby.ucalgary.ca

 

ABIChromatogramToDNASequencePortType

 

ABIChromatogramToDNASequence

 

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[FormatConversion] Reads ABI file and display the trace

 

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data(xsd:string)

 

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body(xsd:string)

 

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-

 

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2625

 

BioMoby: arabidopsis.org

AGILocusListPortType

AGILocusList

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[Retrieval] returns a list of loci that are non-obsoleted from the TAIR database, can be limited by a integer parameter for the number returned,which defaults to 0 for all (or for as many as the service will allow in one query).
Show
AGILocusList

BioMoby: arabidopsis.org

 

AGILocusListPortType

 

AGILocusList

 

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[Retrieval] returns a list of loci that are non-obsoleted from the TAIR database, can be limited by a integer parameter for the number returned,which defaults to 0 for all (or for as many as the service will allow in one query).

 

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data(xsd:string)

 

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body(xsd:string)

 

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4125

 

BioMoby: bioserv.rpbs.jussieu.fr

ASAPortType

ASA

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[ProteinStructures] Accessible Surface Area calculation
Show
ASA

BioMoby: bioserv.rpbs.jussieu.fr

 

ASAPortType

 

ASA

 

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[ProteinStructures] Accessible Surface Area calculation

 

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data(xsd:string)

 

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body(xsd:string)

 

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3444

 

BioMoby: bioserv.rpbs.jussieu.fr

ASAfromPDBidPortType

ASAfromPDBid

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[ProteinStructures] Accessible Surface Area calculation
Show
ASAfromPDBid

BioMoby: bioserv.rpbs.jussieu.fr

 

ASAfromPDBidPortType

 

ASAfromPDBid

 

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[ProteinStructures] Accessible Surface Area calculation

 

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data(xsd:string)

 

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body(xsd:string)

 

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-

 

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3453

 

BioMoby: asrp.cgrb.oregonstate.edu

ASRP_miRNA_target_in_AGIPortType

ASRP_miRNA_target_in_AGI

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit miRNA sequences in the region of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.
Show
ASRP_miRNA_target_in_AGI

BioMoby: asrp.cgrb.oregonstate.edu

 

ASRP_miRNA_target_in_AGIPortType

 

ASRP_miRNA_target_in_AGI

 

-

 

-

 

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit miRNA sequences in the region of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.

 

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data(xsd:string)

 

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body(xsd:string)

 

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2223

 

BioMoby: asrp.cgrb.oregonstate.edu

ASRP_smallRNA_hit_in_IGR_downstream_of_AGIPortType

ASRP_smallRNA_hit_in_IGR_downstream_of_AGI

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit in the IGR downstream of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.
Show
ASRP_smallRNA_hit_in_IGR_downstream_of_AGI

BioMoby: asrp.cgrb.oregonstate.edu

 

ASRP_smallRNA_hit_in_IGR_downstream_of_AGIPortType

 

ASRP_smallRNA_hit_in_IGR_downstream_of_AGI

 

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit in the IGR downstream of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.

 

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data(xsd:string)

 

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body(xsd:string)

 

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2225

 

BioMoby: asrp.cgrb.oregonstate.edu

ASRP_smallRNA_hit_in_IGR_upstream_of_AGIPortType

ASRP_smallRNA_hit_in_IGR_upstream_of_AGI

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit in the IGR upstream of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.
Show
ASRP_smallRNA_hit_in_IGR_upstream_of_AGI

BioMoby: asrp.cgrb.oregonstate.edu

 

ASRP_smallRNA_hit_in_IGR_upstream_of_AGIPortType

 

ASRP_smallRNA_hit_in_IGR_upstream_of_AGI

 

-

 

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs that hit in the IGR upstream of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.

 

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data(xsd:string)

 

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body(xsd:string)

 

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2222

 

BioMoby: asrp.cgrb.oregonstate.edu

ASRP_smallRNA_sequence_from_chromosomal_AGIPortType

ASRP_smallRNA_sequence_from_chromosomal_AGI

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs for the chromosomal gene regions of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.
Show
ASRP_smallRNA_sequence_from_chromosomal_AGI

BioMoby: asrp.cgrb.oregonstate.edu

 

ASRP_smallRNA_sequence_from_chromosomal_AGIPortType

 

ASRP_smallRNA_sequence_from_chromosomal_AGI

 

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[Retrieval] ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the small RNAs for the chromosomal gene regions of the AGI locus code. This tool requires an AGI to be used as the ID and the "AGI_LocusCode" as the namespace for input. Output will include all gff features of the sequence including the sequence and its length.

 

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data(xsd:string)

 

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body(xsd:string)

 

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2224

 

BioMoby: www.weigelworld.org

ATH_Deletion_PredictionPortType

ATH_Deletion_Prediction

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[Retrieval] Retrieve deletions from 19 strains of Arabidopsis resequenced with whole genome oligonucleotide array from Perlegen Sciences.
Show
ATH_Deletion_Prediction

BioMoby: www.weigelworld.org

 

ATH_Deletion_PredictionPortType

 

ATH_Deletion_Prediction

 

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[Retrieval] Retrieve deletions from 19 strains of Arabidopsis resequenced with whole genome oligonucleotide array from Perlegen Sciences.

 

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data(xsd:string)

 

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body(xsd:string)

 

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2520

 

BioMoby: www.weigelworld.org

ATH_SNP_CodingPortType

ATH_SNP_Coding

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[Retrieval] Retrieve SNPs in coding regions from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).
Show
ATH_SNP_Coding

BioMoby: www.weigelworld.org

 

ATH_SNP_CodingPortType

 

ATH_SNP_Coding

 

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[Retrieval] Retrieve SNPs in coding regions from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).

 

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data(xsd:string)

 

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body(xsd:string)

 

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2521

 

BioMoby: www.weigelworld.org

ATH_SNP_RangePortType

ATH_SNP_Range

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[Retrieval] Retrieve SNPs from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).
Show
ATH_SNP_Range

BioMoby: www.weigelworld.org

 

ATH_SNP_RangePortType

 

ATH_SNP_Range

 

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[Retrieval] Retrieve SNPs from 19 strains of Arabidopsis thaliana. SNPs were resequenced using whole genome oligonucleotide arrays from Perlegen science and were predicted using SVMs at the Weigel-Lab (MPI Tuebingen, Germany).

 

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data(xsd:string)

 

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body(xsd:string)

 

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2518

 

BioMoby: biomoby.renci.org

AntiGenicPortType

AntiGenic

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[Service] RENCI impl for AntiGenic service
Show
AntiGenic

BioMoby: biomoby.renci.org

 

AntiGenicPortType

 

AntiGenic

 

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[Service] RENCI impl for AntiGenic service

 

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data(xsd:string)

 

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body(xsd:string)

 

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4069

 

BioMoby: bioserv.rpbs.jussieu.fr

AutomatPortType

Automat

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[Analysis] A tool to scan databanks of nucleic acid or amino acid sequences in order to retrieve sequences distantly related to the query.
Show
Automat

BioMoby: bioserv.rpbs.jussieu.fr

 

AutomatPortType

 

Automat

 

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[Analysis] A tool to scan databanks of nucleic acid or amino acid sequences in order to retrieve sequences distantly related to the query.

 

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data(xsd:string)

 

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body(xsd:string)

 

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3438

 

BIND

BINDSOAPPort

BIVGetComplexRecord

Unknown

Others

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Show
BIVGetComplexRecord

BIND

 

BINDSOAPPort

 

BIVGetComplexRecord

 

Unknown

 

Others

 

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bid(xsd:int)

 

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BIVComplex(impl:BIVComplex=(bid(xsd:int), spokeModel(xsd:boolean), subunit(impl:BIVMolecule=(id(xsd:int), idtype(xsd:string), shortlabel(xsd:string), taxname(xsd:string), aliases(xsd:string), redundant-ids(xsd:string), smid-hits(xsd:int)))))

 

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<a href='http://soap.bind.ca/wsdl/bind.wsdl'>http://soap.bind.ca/wsdl/bind.wsdl</a>

 

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577

 

BIND

BINDSOAPPort

BIVGetInteractionRecord

Unknown

Others

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Show
BIVGetInteractionRecord

BIND

 

BINDSOAPPort

 

BIVGetInteractionRecord

 

Unknown

 

Others

 

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bid(xsd:int)

 

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BIVInteraction(impl:BIVInteraction=(bid(xsd:int), molA(impl:BIVMolecule=(id(xsd:int), idtype(xsd:string), shortlabel(xsd:string), taxname(xsd:string), aliases(xsd:string), redundant-ids(xsd:string), smid-hits(xsd:int))), molB(impl:BIVMolecule=(id(xsd:int), idtype(xsd:string), shortlabel(xsd:string), taxname(xsd:string), aliases(xsd:string), redundant-ids(xsd:string), smid-hits(xsd:int)))))

 

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<a href='http://soap.bind.ca/wsdl/bind.wsdl'>http://soap.bind.ca/wsdl/bind.wsdl</a>

 

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578

 
4172 Found
1 2 3 .. 279

Copyright (C) 2008 DBCLS