Provider portType Operation TogoWS category Moby service class Doc description

BioMoby: genome.imim.es

runPhrapWithQualityDataPortType

runPhrapWithQualityData

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[Analysis] Runs Phrap to Assemble a set of DNA sequences, taking into account base quality data

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runPhrapWithQualityData

BioMoby: genome.imim.es

 

runPhrapWithQualityDataPortType

 

runPhrapWithQualityData

 

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[Analysis] Runs Phrap to Assemble a set of DNA sequences, taking into account base quality data

 

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data(xsd:string)

 

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body(xsd:string)

 

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4156

 

BioMoby: genome.imim.es

runDustFASTA_NA_multiPortType

runDustFASTA_NA_multi

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[Analysis] Runs dust to mask low-complexity regions within a set of DNA sequences in FASTA format

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runDustFASTA_NA_multi

BioMoby: genome.imim.es

 

runDustFASTA_NA_multiPortType

 

runDustFASTA_NA_multi

 

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[Analysis] Runs dust to mask low-complexity regions within a set of DNA sequences in FASTA format

 

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data(xsd:string)

 

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body(xsd:string)

 

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4157

 

BioMoby: genome.imim.es

filterSequencesAndQualityDataByLengthPortType

filterSequencesAndQualityDataByLength

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[Analysis] Filters a set of sequences based on their length. Only sequences which length is greater than the length cutoff will be returned. It also filters out the quality data associated with the removed sequences.

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filterSequencesAndQualityDataByLength

BioMoby: genome.imim.es

 

filterSequencesAndQualityDataByLengthPortType

 

filterSequencesAndQualityDataByLength

 

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[Analysis] Filters a set of sequences based on their length. Only sequences which length is greater than the length cutoff will be returned. It also filters out the quality data associated with the removed sequences.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4158

 

BioMoby: genome.imim.es

runMultiMetaAlignmentPortType

runMultiMetaAlignment

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[Analysis] Runs Multiple-Meta-Alignment software to perform multiple non-collinear transcription factor map alignments of promoter regions. It returns the multiple-meta-alignment output in meta-alignment text format.

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runMultiMetaAlignment

BioMoby: genome.imim.es

 

runMultiMetaAlignmentPortType

 

runMultiMetaAlignment

 

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[Analysis] Runs Multiple-Meta-Alignment software to perform multiple non-collinear transcription factor map alignments of promoter regions. It returns the multiple-meta-alignment output in meta-alignment text format.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4159

 

BioMoby: genome.imim.es

fromFASTAToAminoAcidSequencePortType

fromFASTAToAminoAcidSequence

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[Conversion] Converts aminoacid FASTA sequence into an aminoacid sequence

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fromFASTAToAminoAcidSequence

BioMoby: genome.imim.es

 

fromFASTAToAminoAcidSequencePortType

 

fromFASTAToAminoAcidSequence

 

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[Conversion] Converts aminoacid FASTA sequence into an aminoacid sequence

 

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data(xsd:string)

 

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body(xsd:string)

 

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4160

 

BioMoby: genome.imim.es

translateGeneIDGFFPredictionsPortType

translateGeneIDGFFPredictions

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[Analysis] Translates the GeneID gene predictions, given in GFF format, into a set of aminoacid sequences

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translateGeneIDGFFPredictions

BioMoby: genome.imim.es

 

translateGeneIDGFFPredictionsPortType

 

translateGeneIDGFFPredictions

 

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[Analysis] Translates the GeneID gene predictions, given in GFF format, into a set of aminoacid sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4161

 

BioMoby: genome.imim.es

runSGP2GFFPortType

runSGP2GFF

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[Analysis] Ab initio gene prediction service that runs geneid with synteny evidences and returns the output predictions in GFF format. To generate the synteny evidences, use a tblastx service

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runSGP2GFF

BioMoby: genome.imim.es

 

runSGP2GFFPortType

 

runSGP2GFF

 

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[Analysis] Ab initio gene prediction service that runs geneid with synteny evidences and returns the output predictions in GFF format. To generate the synteny evidences, use a tblastx service

 

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data(xsd:string)

 

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body(xsd:string)

 

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4162

 

BioMoby: genome.imim.es

runMetaAlignmentPortType

runMetaAlignment

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[Alignment] Produces alignments of sequences of TF binding sites and returns the predictions in 'Meta-alignment' format. You can use runMatScanGFF to produce the input GFF files, specifying the 'log-likelihood' matrix mode.

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runMetaAlignment

BioMoby: genome.imim.es

 

runMetaAlignmentPortType

 

runMetaAlignment

 

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[Alignment] Produces alignments of sequences of TF binding sites and returns the predictions in 'Meta-alignment' format. You can use runMatScanGFF to produce the input GFF files, specifying the 'log-likelihood' matrix mode.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4163

 

BioMoby: genome.imim.es

runRepeatMaskerCollectionPortType

runRepeatMaskerCollection

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[Analysis] Runs RepeatMasker to mask repeat sequences a set of DNA sequences

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runRepeatMaskerCollection

BioMoby: genome.imim.es

 

runRepeatMaskerCollectionPortType

 

runRepeatMaskerCollection

 

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[Analysis] Runs RepeatMasker to mask repeat sequences a set of DNA sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4164

 

BioMoby: genome.imim.es

runRepeatMaskerPortType

runRepeatMasker

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[Analysis] Run RepeatMasker to mask repeat sequences within a DNA sequence

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runRepeatMasker

BioMoby: genome.imim.es

 

runRepeatMaskerPortType

 

runRepeatMasker

 

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[Analysis] Run RepeatMasker to mask repeat sequences within a DNA sequence

 

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data(xsd:string)

 

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body(xsd:string)

 

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4165

 

BioMoby: genome.imim.es

runDustCollectionPortType

runDustCollection

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[Analysis] Runs dust to mask low-complexity regions within a set of DNA sequences

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runDustCollection

BioMoby: genome.imim.es

 

runDustCollectionPortType

 

runDustCollection

 

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[Analysis] Runs dust to mask low-complexity regions within a set of DNA sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4166

 

BioMoby: genome.imim.es

runDustPortType

runDust

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[Analysis] Runs dust to mask low-complexity regions within a DNA sequence

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runDust

BioMoby: genome.imim.es

 

runDustPortType

 

runDust

 

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[Analysis] Runs dust to mask low-complexity regions within a DNA sequence

 

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data(xsd:string)

 

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body(xsd:string)

 

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4167

 

BioMoby: genome.imim.es

runCrossMatchToScreenVectorCollectionPortType

runCrossMatchToScreenVectorCollection

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[Analysis] Runs cross_match to screen out vector sequences from a set of DNA sequences. The vector sequences dataset is stored internally

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runCrossMatchToScreenVectorCollection

BioMoby: genome.imim.es

 

runCrossMatchToScreenVectorCollectionPortType

 

runCrossMatchToScreenVectorCollection

 

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[Analysis] Runs cross_match to screen out vector sequences from a set of DNA sequences. The vector sequences dataset is stored internally

 

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data(xsd:string)

 

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body(xsd:string)

 

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4168

 

BioMoby: genome.imim.es

runCrossMatchToScreenVectorPortType

runCrossMatchToScreenVector

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[Analysis] Runs cross_match to screen out vector sequences from a DNA sequence. The vector sequences dataset is stored internally

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runCrossMatchToScreenVector

BioMoby: genome.imim.es

 

runCrossMatchToScreenVectorPortType

 

runCrossMatchToScreenVector

 

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[Analysis] Runs cross_match to screen out vector sequences from a DNA sequence. The vector sequences dataset is stored internally

 

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data(xsd:string)

 

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body(xsd:string)

 

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4169

 

BioMoby: genome.imim.es

runPhredCollectionPortType

runPhredCollection

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[Analysis] Phred writes the base calls from a set of chromatograms and returns a set of DNA sequences and FASTA base quality data

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runPhredCollection

BioMoby: genome.imim.es

 

runPhredCollectionPortType

 

runPhredCollection

 

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[Analysis] Phred writes the base calls from a set of chromatograms and returns a set of DNA sequences and FASTA base quality data

 

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data(xsd:string)

 

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body(xsd:string)

 

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4170