Provider portType Operation TogoWS category Moby service class Doc description

BioMoby: genome.imim.es

fromFASTAToAminoAcidSequenceCollectionPortType

fromFASTAToAminoAcidSequenceCollection

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[Conversion] Converts aminoacid FASTA sequences into a collection of aminoacid sequences

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fromFASTAToAminoAcidSequenceCollection

BioMoby: genome.imim.es

 

fromFASTAToAminoAcidSequenceCollectionPortType

 

fromFASTAToAminoAcidSequenceCollection

 

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[Conversion] Converts aminoacid FASTA sequences into a collection of aminoacid sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4141

 

BioMoby: genome.imim.es

fromFASTAToGenericSequenceCollectionPortType

fromFASTAToGenericSequenceCollection

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[Conversion] Converts a FASTA object into a collection of GenericSequence moby objects

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fromFASTAToGenericSequenceCollection

BioMoby: genome.imim.es

 

fromFASTAToGenericSequenceCollectionPortType

 

fromFASTAToGenericSequenceCollection

 

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[Conversion] Converts a FASTA object into a collection of GenericSequence moby objects

 

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data(xsd:string)

 

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body(xsd:string)

 

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4142

 

BioMoby: genome.imim.es

fromGenericSequenceCollectionToFASTAPortType

fromGenericSequenceCollectionToFASTA

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[Conversion] Converts a collection of generic sequences into FASTA sequences

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fromGenericSequenceCollectionToFASTA

BioMoby: genome.imim.es

 

fromGenericSequenceCollectionToFASTAPortType

 

fromGenericSequenceCollectionToFASTA

 

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[Conversion] Converts a collection of generic sequences into FASTA sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4143

 

BioMoby: genome.imim.es

runMemeHTMLPortType

runMemeHTML

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[Analysis] Analyzes a set of protein or DNA sequences for similarities among them and produces a description (motif) for each pattern it discovers. The results are returned in HTML format

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runMemeHTML

BioMoby: genome.imim.es

 

runMemeHTMLPortType

 

runMemeHTML

 

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[Analysis] Analyzes a set of protein or DNA sequences for similarities among them and produces a description (motif) for each pattern it discovers. The results are returned in HTML format

 

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data(xsd:string)

 

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body(xsd:string)

 

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4144

 

BioMoby: genome.imim.es

runMultiPairwiseMetaAlignmentGFFPortType

runMultiPairwiseMetaAlignmentGFF

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[Alignment] Runs Meta-alignment software on a multiple running mode, receiving a collection of maps, making pairs of them and, foreach pair, producing, in GFF format, alignments of sequences of TF binding sites

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runMultiPairwiseMetaAlignmentGFF

BioMoby: genome.imim.es

 

runMultiPairwiseMetaAlignmentGFFPortType

 

runMultiPairwiseMetaAlignmentGFF

 

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[Alignment] Runs Meta-alignment software on a multiple running mode, receiving a collection of maps, making pairs of them and, foreach pair, producing, in GFF format, alignments of sequences of TF binding sites

 

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data(xsd:string)

 

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body(xsd:string)

 

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4145

 

BioMoby: genome.imim.es

runMatScanGFFCollectionPortType

runMatScanGFFCollection

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[Analysis] Analyzes a collection of DNA sequences for putative transcription factor binding sites from Transfac or Jaspar and reports them in GFF format

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runMatScanGFFCollection

BioMoby: genome.imim.es

 

runMatScanGFFCollectionPortType

 

runMatScanGFFCollection

 

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[Analysis] Analyzes a collection of DNA sequences for putative transcription factor binding sites from Transfac or Jaspar and reports them in GFF format

 

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data(xsd:string)

 

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body(xsd:string)

 

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4146

 

BioMoby: genome.imim.es

runMatScanGFFPortType

runMatScanGFF

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[Analysis] Analyzes a DNA sequence for putative transcription factor binding sites from Transfac or Jaspar and reports them in GFF format

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runMatScanGFF

BioMoby: genome.imim.es

 

runMatScanGFFPortType

 

runMatScanGFF

 

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[Analysis] Analyzes a DNA sequence for putative transcription factor binding sites from Transfac or Jaspar and reports them in GFF format

 

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data(xsd:string)

 

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body(xsd:string)

 

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4147

 

BioMoby: genome.imim.es

runMatScanGFFCollectionVsInputMatricesPortType

runMatScanGFFCollectionVsInputMatrices

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[Analysis] Analyzes a collection of DNA sequences for putative motifs (transcription or splicing factor binding sites) and reports them in GFF format. The collection of motifs is given by the user as a set of Position Weight Matrices (PWMs)

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runMatScanGFFCollectionVsInputMatrices

BioMoby: genome.imim.es

 

runMatScanGFFCollectionVsInputMatricesPortType

 

runMatScanGFFCollectionVsInputMatrices

 

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[Analysis] Analyzes a collection of DNA sequences for putative motifs (transcription or splicing factor binding sites) and reports them in GFF format. The collection of motifs is given by the user as a set of Position Weight Matrices (PWMs)

 

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data(xsd:string)

 

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body(xsd:string)

 

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4148

 

BioMoby: genome.imim.es

runMemeTextPortType

runMemeText

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[Analysis] Analyzes a set of protein or DNA sequences for similarities among them and produces a description (motif) for each pattern it discovers. The results are returned in MEME text format

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runMemeText

BioMoby: genome.imim.es

 

runMemeTextPortType

 

runMemeText

 

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[Analysis] Analyzes a set of protein or DNA sequences for similarities among them and produces a description (motif) for each pattern it discovers. The results are returned in MEME text format

 

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data(xsd:string)

 

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body(xsd:string)

 

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4149

 

BioMoby: genome.imim.es

runGFF2JPEGPortType

runGFF2JPEG

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[Analysis] Runs gff2ps software to vizualize a set of GFF annotations maps. It returns an encoded image in JPEG format.

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runGFF2JPEG

BioMoby: genome.imim.es

 

runGFF2JPEGPortType

 

runGFF2JPEG

 

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[Analysis] Runs gff2ps software to vizualize a set of GFF annotations maps. It returns an encoded image in JPEG format.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4150

 

BioMoby: genome.imim.es

fromFASTAToDNASequenceCollectionPortType

fromFASTAToDNASequenceCollection

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[Conversion] Converts DNA FASTA sequences into a collection of DNA sequences

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fromFASTAToDNASequenceCollection

BioMoby: genome.imim.es

 

fromFASTAToDNASequenceCollectionPortType

 

fromFASTAToDNASequenceCollection

 

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[Conversion] Converts DNA FASTA sequences into a collection of DNA sequences

 

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data(xsd:string)

 

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body(xsd:string)

 

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4151

 

BioMoby: genome.imim.es

runMetaAlignmentGFFPortType

runMetaAlignmentGFF

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[Alignment] Produces alignments of sequences of TF binding sites and returns the predictions in GFF format. You can use runMatScanGFF to produce the input GFF files, specifying the 'log-likelihood' matrix mode

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runMetaAlignmentGFF

BioMoby: genome.imim.es

 

runMetaAlignmentGFFPortType

 

runMetaAlignmentGFF

 

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[Alignment] Produces alignments of sequences of TF binding sites and returns the predictions in GFF format. You can use runMatScanGFF to produce the input GFF files, specifying the 'log-likelihood' matrix mode

 

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data(xsd:string)

 

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body(xsd:string)

 

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4152

 

BioMoby: genome.imim.es

runGeneIDGFF3PortType

runGeneIDGFF3

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[GeneFinding] Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 3). It also returns a set of translated aminoacid sequences.

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runGeneIDGFF3

BioMoby: genome.imim.es

 

runGeneIDGFF3PortType

 

runGeneIDGFF3

 

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[GeneFinding] Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 3). It also returns a set of translated aminoacid sequences.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4153

 

BioMoby: genome.imim.es

filterSequencesByLengthPortType

filterSequencesByLength

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[Analysis] Filters a set of sequences based on their length. Only sequences which length is greater than the length cutoff will be returned.

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filterSequencesByLength

BioMoby: genome.imim.es

 

filterSequencesByLengthPortType

 

filterSequencesByLength

 

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[Analysis] Filters a set of sequences based on their length. Only sequences which length is greater than the length cutoff will be returned.

 

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data(xsd:string)

 

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body(xsd:string)

 

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4154

 

BioMoby: genome.imim.es

runGeneIDGFFPortType

runGeneIDGFF

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[GeneFinding] Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 2).

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runGeneIDGFF

BioMoby: genome.imim.es

 

runGeneIDGFFPortType

 

runGeneIDGFF

 

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[GeneFinding] Ab initio gene prediction tool that returns the gene predictions in GFF format (GFF version 2).

 

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data(xsd:string)

 

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body(xsd:string)

 

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4155