Provider portType Operation TogoWS category Moby service class Doc description

PDBj

PDBjSOAPXPortType

xqueryasstring

Database Search > PDB

Database

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Show
xqueryasstring

PDBj

 

PDBjSOAPXPortType

 

xqueryasstring

 

Database Search > PDB

 

Database

 

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-

 

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xpath(xsd:string), quantity(xsd:string)

 

-

 

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doclist(tns:stringresult=(SOAP-ENC:arrayType of xsd:string[]))

 

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301

 

PDBj

PDBjSOAPXPortType

xqueryasmime

Database Search > PDB

Database

-

Show
xqueryasmime

PDBj

 

PDBjSOAPXPortType

 

xqueryasmime

 

Database Search > PDB

 

Database

 

-

 

-

 

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xpath(xsd:string), quantity(xsd:string)

 

-

 

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notspecified

 

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-

 

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300

 

PDBj

PDBjSOAPXPortType

xquery

Database Search > PDB

Database

-

Show
xquery

PDBj

 

PDBjSOAPXPortType

 

xquery

 

Database Search > PDB

 

Database

 

-

 

-

 

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xpath(xsd:string), quantity(xsd:string)

 

-

 

-

 

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doclist(tns:doclist=(#any))

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

299

 

myGrid

AnalysisWSAppLabImpl

waitFor

Database Search > SRS

Database

[database srsbuilder] Builds simple srs query

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Database Search > SRS

 

Database

 

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[database srsbuilder] Builds simple srs query

 

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in0(xsd:string)

 

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-

 

-

 

waitForResponse

 

-

 

-

 

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<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/database::srsbuilder?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/database::srsbuilder?wsdl</a>

 

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-

 

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1829

 

EMBOSS

nucleic_composition__isochore

waitFor

Analysis > Calculate Nucleic Property

PhysicoChemical_Properties

Plots isochores in large DNA sequences

Show
waitFor

EMBOSS

 

nucleic_composition__isochore

 

waitFor

 

Analysis > Calculate Nucleic Property

 

PhysicoChemical_Properties

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Plots isochores in large DNA sequences

 

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parameters(impl:waitFor=())

 

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parameters(impl:waitForResponse=())

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/isochore.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/isochore.wsdl</a>

 

-

 

-

 

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1027

 

myGrid

AnalysisWSAppLabImpl

waitFor

Parsing > Blast Result

Parsing

[parsers blastextractor] Extracts human and yeast swissprot ID's from blast output

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Parsing > Blast Result

 

Parsing

 

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[parsers blastextractor] Extracts human and yeast swissprot ID's from blast output

 

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in0(xsd:string)

 

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-

 

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waitForResponse

 

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<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/parsers::blastextractor?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/parsers::blastextractor?wsdl</a>

 

-

 

-

 

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1852

 

EMBOSS

nucleic_composition__sirna

waitFor

Prediction > Nucleotide Structure Prediction

Nucleotidic_2D_Structures

Finds siRNA duplexes in mRNA

Show
waitFor

EMBOSS

 

nucleic_composition__sirna

 

waitFor

 

Prediction > Nucleotide Structure Prediction

 

Nucleotidic_2D_Structures

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Finds siRNA duplexes in mRNA

 

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parameters(impl:waitFor=())

 

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parameters(impl:waitForResponse=())

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/sirna.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/sirna.wsdl</a>

 

-

 

-

 

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1032

 

myGrid

AnalysisWSAppLabImpl

waitFor

Parsing > Blast Result

Parsing

[seq_analysis blastcomparer] Compares a new BLAST output with an older output to check for new hits

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Parsing > Blast Result

 

Parsing

 

-

 

[seq_analysis blastcomparer] Compares a new BLAST output with an older output to check for new hits

 

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in0(xsd:string)

 

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waitForResponse

 

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<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::blastcomparer?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::blastcomparer?wsdl</a>

 

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1898

 

EMBOSS

nucleic_composition__wordcount

waitFor

Analysis > Calculate Nucleic Composition

Composition

Counts words of a specified size in a DNA sequence

Show
waitFor

EMBOSS

 

nucleic_composition__wordcount

 

waitFor

 

Analysis > Calculate Nucleic Composition

 

Composition

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Counts words of a specified size in a DNA sequence

 

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parameters(impl:waitFor=())

 

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parameters(impl:waitForResponse=())

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/wordcount.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/wordcount.wsdl</a>

 

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1037

 

myGrid

AnalysisWSAppLabImpl

waitFor

Homology Search > NCBI-Blast

Pairwise_Local_Aligning

[seq_analysis blast2] Compares two blast outputs (defaults)

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Homology Search > NCBI-Blast

 

Pairwise_Local_Aligning

 

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[seq_analysis blast2] Compares two blast outputs (defaults)

 

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in0(xsd:string)

 

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waitForResponse

 

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<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::blast2?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::blast2?wsdl</a>

 

-

 

-

 

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1875

 

EMBOSS

nucleic_cpg_islands__cpgplot

waitFor

Display > Graph > EMBOSS > cpgplot

Displaying

Plot CpG rich areas

Show
waitFor

EMBOSS

 

nucleic_cpg_islands__cpgplot

 

waitFor

 

Display > Graph > EMBOSS > cpgplot

 

Displaying

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Plot CpG rich areas

 

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parameters(impl:waitFor=())

 

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-

 

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parameters(impl:waitForResponse=())

 

-

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/cpgplot.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/cpgplot.wsdl</a>

 

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1042

 

myGrid

AnalysisWSAppLabImpl

waitFor

Database Search > Inparanoid

Database

[database paraextractor] Extracts yeast orthologs of a human input sequence from inparanoid database

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Database Search > Inparanoid

 

Database

 

-

 

[database paraextractor] Extracts yeast orthologs of a human input sequence from inparanoid database

 

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in0(xsd:string)

 

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waitForResponse

 

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<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/database::paraextractor?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/database::paraextractor?wsdl</a>

 

-

 

-

 

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1806

 

EMBOSS

nucleic_cpg_islands__cpgreport

waitFor

Prediction > CpG Rich Region Prediction > EMBOSS > cpgreport

Nucleotidic_Motifs

Reports all CpG rich regions

Show
waitFor

EMBOSS

 

nucleic_cpg_islands__cpgreport

 

waitFor

 

Prediction > CpG Rich Region Prediction > EMBOSS > cpgreport

 

Nucleotidic_Motifs

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Reports all CpG rich regions

 

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parameters(impl:waitFor=())

 

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-

 

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parameters(impl:waitForResponse=())

 

-

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/cpgreport.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/cpgreport.wsdl</a>

 

-

 

-

 

-

 

1047

 

myGrid

AnalysisWSAppLabImpl

waitFor

Parsing > Blast Result

Parsing

[seq_analysis genbankretrieve] Retrieves Genbank records given the blast comparison report, species and chromosome number

Show
waitFor

myGrid

 

AnalysisWSAppLabImpl

 

waitFor

 

Parsing > Blast Result

 

Parsing

 

-

 

[seq_analysis genbankretrieve] Retrieves Genbank records given the blast comparison report, species and chromosome number

 

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in0(xsd:string)

 

-

 

-

 

-

 

waitForResponse

 

-

 

-

 

-

 

<a href='http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::genbankretrieve?wsdl'>http://phoebus.cs.man.ac.uk:8081/axis/services/seq_analysis::genbankretrieve?wsdl</a>

 

-

 

-

 

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1967

 

EMBOSS

nucleic_cpg_islands__geecee

waitFor

Analysis > Calculate Nucleic Composition > Calculate GC Contents > EMBOSS > geecee

Composition

Calculates fractional GC content of nucleic acid sequences

Show
waitFor

EMBOSS

 

nucleic_cpg_islands__geecee

 

waitFor

 

Analysis > Calculate Nucleic Composition > Calculate GC Contents > EMBOSS > geecee

 

Composition

 

Wait until a job (by job-id) has finished. Blocks until job is finished.

 

Calculates fractional GC content of nucleic acid sequences

 

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parameters(impl:waitFor=())

 

-

 

-

 

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parameters(impl:waitForResponse=())

 

-

 

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<a href='http://www.ebi.ac.uk/soaplab/emboss4/wsdl/geecee.wsdl'>http://www.ebi.ac.uk/soaplab/emboss4/wsdl/geecee.wsdl</a>

 

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1052