TogoWS: world method list

This database contains a list of methods provided by worldwide bioinformatics web services including BioMoby with assignments of the category and input/output data types.
4172 Found
Columns ... 1 2 3 .. 279

Provider portType Operation TogoWS category Moby service class Doc description

PDBj

SeqnaviXSoapApi

seq_align

Pairwise Structure Alignment

Aligning_Structures

Run RMSD superposition and NER superposition
Show
seq_align

PDBj

 

SeqnaviXSoapApi

 

seq_align

 

Pairwise Structure Alignment

 

Aligning_Structures

 

-

 

Run RMSD superposition and NER superposition

 

-

 

in0(tns1:SeqnaviNeighbor)

 

-

 

-

 

-

 

seqAlignReturn(tns1:SeqnaviSuperpositionResult)

 

-

 

-

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl</a>

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/</a>

 

-

 

302

 

BioMoby: www.cnb.uam.es

runDaliLitePortType

runDaliLite_submit

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.
Show
runDaliLite_submit

BioMoby: www.cnb.uam.es

 

runDaliLitePortType

 

runDaliLite_submit

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.

 

-

 

data(xsd:string)

 

-

 

-

 

-

 

body(tns:MOBY_async_OutputType=(()))

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3349

 

PDBj

SeqnaviXSoapApi

seq_sup_ner

Pairwise Structure Alignment

Aligning_Structures

Get the RMSD superposition by PDB format
Show
seq_sup_ner

PDBj

 

SeqnaviXSoapApi

 

seq_sup_ner

 

Pairwise Structure Alignment

 

Aligning_Structures

 

-

 

Get the RMSD superposition by PDB format

 

-

 

in0(tns1:SeqnaviNeighbor)

 

-

 

-

 

-

 

seqSupNerReturn(xsd:string)

 

-

 

-

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl</a>

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/</a>

 

-

 

304

 

BioMoby: www.cnb.uam.es

WSRF_Operations_PortType

GetMultipleResourceProperties

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Performs one-against-all pairwise alignments using 3D lookup and exhaustive search (Parsi method), or Soap if the query structure has few secondary structure elements.
Show
GetMultipleResourceProperties

BioMoby: www.cnb.uam.es

 

WSRF_Operations_PortType

 

GetMultipleResourceProperties

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Performs one-against-all pairwise alignments using 3D lookup and exhaustive search (Parsi method), or Soap if the query structure has few secondary structure elements.

 

-

 

GetMultipleResourcePropertiesRequest

 

-

 

-

 

-

 

GetMultipleResourcePropertiesResponse

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3351

 

PDBj

SeqnaviXSoapApi

seq_sup_rmsd

Pairwise Structure Alignment

Aligning_Structures

Get the NER superposition by PDB forma
Show
seq_sup_rmsd

PDBj

 

SeqnaviXSoapApi

 

seq_sup_rmsd

 

Pairwise Structure Alignment

 

Aligning_Structures

 

-

 

Get the NER superposition by PDB forma

 

-

 

in0(tns1:SeqnaviNeighbor)

 

-

 

-

 

-

 

seqSupRmsdReturn(xsd:string)

 

-

 

-

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/seqnavix.wsdl</a>

 

-

 

<a href='http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/'>http://pdbjs3.protein.osaka-u.ac.jp/seqnavix/soap/</a>

 

-

 

305

 

BioMoby: www.cnb.uam.es

WSRF_Operations_PortType

GetResourceProperty

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Performs one-against-all pairwise alignments using 3D lookup and exhaustive search (Parsi method), or Soap if the query structure has few secondary structure elements.
Show
GetResourceProperty

BioMoby: www.cnb.uam.es

 

WSRF_Operations_PortType

 

GetResourceProperty

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Performs one-against-all pairwise alignments using 3D lookup and exhaustive search (Parsi method), or Soap if the query structure has few secondary structure elements.

 

-

 

GetResourcePropertyRequest

 

-

 

-

 

-

 

GetResourcePropertyResponse

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3352

 

EBI

WSMaxsprout

checkStatus

Prediction > Protein Structure Prediction

Aligning_Structures

-
Show
checkStatus

EBI

 

WSMaxsprout

 

checkStatus

 

Prediction > Protein Structure Prediction

 

Aligning_Structures

 

-

 

-

 

-

 

jobid(xsd:string)

 

-

 

-

 

-

 

status(xsd:string)

 

-

 

-

 

-

 

<a href='http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl'>http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl</a>

 

-

 

-

 

-

 

567

 

BioMoby: www.cnb.uam.es

runDaliLitePortType

runDaliLite

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.
Show
runDaliLite

BioMoby: www.cnb.uam.es

 

runDaliLitePortType

 

runDaliLite

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.

 

-

 

data(xsd:string)

 

-

 

-

 

-

 

body(xsd:string)

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3348

 

EBI

WSMaxsprout

doMaxsprout

Prediction > Protein Structure Prediction

Aligning_Structures

-
Show
doMaxsprout

EBI

 

WSMaxsprout

 

doMaxsprout

 

Prediction > Protein Structure Prediction

 

Aligning_Structures

 

-

 

-

 

-

 

params(tns:inputParams=(sequence(xsd:string), async(xsd:boolean), email(xsd:string))), content(xsd:base64Binary)

 

-

 

-

 

-

 

result(xsd:base64Binary)

 

-

 

-

 

-

 

<a href='http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl'>http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl</a>

 

-

 

-

 

-

 

568

 

BioMoby: www.cnb.uam.es

WSRF_Operations_PortType

Destroy

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.
Show
Destroy

BioMoby: www.cnb.uam.es

 

WSRF_Operations_PortType

 

Destroy

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.

 

-

 

DestroyRequest

 

-

 

-

 

-

 

DestroyResponse

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3345

 

EBI

WSMaxsprout

getIds

Prediction > Protein Structure Prediction

Aligning_Structures

-
Show
getIds

EBI

 

WSMaxsprout

 

getIds

 

Prediction > Protein Structure Prediction

 

Aligning_Structures

 

-

 

-

 

-

 

jobid(xsd:string)

 

-

 

-

 

-

 

result(tns:ArrayOf_xsd_string=(soapenc:arrayType of xsd:string[]))

 

-

 

-

 

-

 

<a href='http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl'>http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl</a>

 

-

 

-

 

-

 

569

 

BioMoby: www.cnb.uam.es

WSRF_Operations_PortType

GetResourceProperty

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.
Show
GetResourceProperty

BioMoby: www.cnb.uam.es

 

WSRF_Operations_PortType

 

GetResourceProperty

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.

 

-

 

GetResourcePropertyRequest

 

-

 

-

 

-

 

GetResourcePropertyResponse

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3347

 

EBI

WSMaxsprout

getResults

Prediction > Protein Structure Prediction

Aligning_Structures

-
Show
getResults

EBI

 

WSMaxsprout

 

getResults

 

Prediction > Protein Structure Prediction

 

Aligning_Structures

 

-

 

-

 

-

 

jobid(xsd:string)

 

-

 

-

 

-

 

results(tns:WSArrayofFile=(soapenc:arrayType of tns:WSFile=(type(xsd:string), ext(xsd:string))[]))

 

-

 

-

 

-

 

<a href='http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl'>http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl</a>

 

-

 

-

 

-

 

570

 

BioMoby: www.cnb.uam.es

WSRF_Operations_PortType

GetMultipleResourceProperties

Pairwise Structure Alignment > DaliLite

Aligning_Structures

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.
Show
GetMultipleResourceProperties

BioMoby: www.cnb.uam.es

 

WSRF_Operations_PortType

 

GetMultipleResourceProperties

 

Pairwise Structure Alignment > DaliLite

 

Aligning_Structures

 

-

 

[Aligning_Structures] Makes a pairwise structure comparison between two PDB chains.

 

-

 

GetMultipleResourcePropertiesRequest

 

-

 

-

 

-

 

GetMultipleResourcePropertiesResponse

 

-

 

-

 

-

 

-

 

-

 

-

 

-

 

3346

 

EBI

WSMaxsprout

poll

Prediction > Protein Structure Prediction

Aligning_Structures

-
Show
poll

EBI

 

WSMaxsprout

 

poll

 

Prediction > Protein Structure Prediction

 

Aligning_Structures

 

-

 

-

 

-

 

jobid(xsd:string), type(xsd:string)

 

-

 

-

 

-

 

output(xsd:base64Binary)

 

-

 

-

 

-

 

<a href='http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl'>http://www.ebi.ac.uk/Tools/webservices/wsdl/WSMaxsprout.wsdl</a>

 

-

 

-

 

-

 

571

 
4172 Found
1 2 3 .. 279

Copyright (C) 2008 DBCLS