Method name Description Provider Input Output

PdbjGashAsyncResult

description of PdbjGashAsyncResult

PDBj

string jobid

GashResult

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PdbjGashAsyncResult

PdbjGashAsyncResult

 

description of PdbjGashAsyncResult

 

PDBj

 

string jobid

 

GashResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashAsyncResult.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashAsyncResult.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashAsyncResult.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashAsyncResult.java

 

361

 

PdbjGashGashsup

description of PdbjGashGashsup

PDBj

string jobid, int supid

string

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PdbjGashGashsup

PdbjGashGashsup

 

description of PdbjGashGashsup

 

PDBj

 

string jobid, int supid

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashGashsup.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashGashsup.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashGashsup.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashGashsup.java

 

362

 

PdbjSeqnavixSeqAlign

description of PdbjSeqnavixSeqAlign

PDBj

SeqnaviNeighbor seq_align_request

SeqnaviSuperpositionResult

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PdbjSeqnavixSeqAlign

PdbjSeqnavixSeqAlign

 

description of PdbjSeqnavixSeqAlign

 

PDBj

 

SeqnaviNeighbor seq_align_request

 

SeqnaviSuperpositionResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqAlign.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqAlign.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqAlign.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqAlign.java

 

363

 

PdbjSeqnavixSeqNeighbors

description of PdbjSeqnavixSeqNeighbors

PDBj

SeqnaviInput seq_neighbors_request

SeqnaviNeighborResult

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PdbjSeqnavixSeqNeighbors

PdbjSeqnavixSeqNeighbors

 

description of PdbjSeqnavixSeqNeighbors

 

PDBj

 

SeqnaviInput seq_neighbors_request

 

SeqnaviNeighborResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqNeighbors.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqNeighbors.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqNeighbors.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqNeighbors.java

 

364

 

PdbjSeqnavixSeqSupNer

description of PdbjSeqnavixSeqSupNer

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

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PdbjSeqnavixSeqSupNer

PdbjSeqnavixSeqSupNer

 

description of PdbjSeqnavixSeqSupNer

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupNer.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupNer.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupNer.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupNer.java

 

365

 

PdbjSeqnavixSeqSupRmsd

description of PdbjSeqnavixSeqSupRmsd

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

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PdbjSeqnavixSeqSupRmsd

PdbjSeqnavixSeqSupRmsd

 

description of PdbjSeqnavixSeqSupRmsd

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupRmsd.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupRmsd.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupRmsd.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupRmsd.java

 

366

 

PdbjTxquery

description of PdbjTxquery

PDBj

string txquery, string quantity

string

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PdbjTxquery

PdbjTxquery

 

description of PdbjTxquery

 

PDBj

 

string txquery, string quantity

 

string

 

txquery = "for $b in input()/datablock/struct_confCategory/struct_conf
where $b/pdbx_PDB_helix_length=10
return
<result>
{$b/../../@datablockName}
{$b}
</result>", quantity="5"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjTxquery.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjTxquery.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjTxquery.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjTxquery.java

 

367

 

PdbjXquery

description of PdbjXquery

PDBj

string xpath, string quantity

string

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PdbjXquery

PdbjXquery

 

description of PdbjXquery

 

PDBj

 

string xpath, string quantity

 

string

 

xpath="/datablock/entityCategory/entity", quantity="1"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjXquery.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjXquery.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjXquery.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjXquery.java

 

368