TogoWS: domestic method list

This database contains a list of methods provided by Japanese bioinformatics web services (DDBJ, KEGG, PDBj) with sample codes for Ruby, Perl, Python and Java languages.
368 Found
Columns ... 1 2 3 .. 25

Method name Description Provider Input Output

KeggGetKoByKoClass

description of KeggGetKoByKoClass

KEGG

string class_id

DefinitionArray
Show
KeggGetKoByKoClass

KeggGetKoByKoClass

 

description of KeggGetKoByKoClass

 

KEGG

 

string class_id

 

DefinitionArray

 

class_id="01196"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetKoByKoClass.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetKoByKoClass.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetKoByKoClass.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetKoByKoClass.java

 

322

 

KeggListDatabases

description of KeggListDatabases

KEGG

-

DefinitionArray
Show
KeggListDatabases

KeggListDatabases

 

description of KeggListDatabases

 

KEGG

 

-

 

DefinitionArray

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggListDatabases.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggListDatabases.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggListDatabases.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggListDatabases.java

 

343

 

KeggListKoClasses

description of KeggListKoClasses

KEGG

string class_id

DefinitionArray
Show
KeggListKoClasses

KeggListKoClasses

 

description of KeggListKoClasses

 

KEGG

 

string class_id

 

DefinitionArray

 

class_id="01110"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggListKoClasses.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggListKoClasses.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggListKoClasses.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggListKoClasses.java

 

344

 

KeggListOrganisms

description of KeggListOrganisms

KEGG

-

DefinitionArray
Show
KeggListOrganisms

KeggListOrganisms

 

description of KeggListOrganisms

 

KEGG

 

-

 

DefinitionArray

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggListOrganisms.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggListOrganisms.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggListOrganisms.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggListOrganisms.java

 

345

 

KeggListPathways

description of KeggListPathways

KEGG

string org

DefinitionArray
Show
KeggListPathways

KeggListPathways

 

description of KeggListPathways

 

KEGG

 

string org

 

DefinitionArray

 

org="map"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggListPathways.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggListPathways.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggListPathways.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggListPathways.java

 

346

 

KeggGetGenesByKoClass

description of KeggGetGenesByKoClass

KEGG

string class_id, string org, int offset, int limit

DefinitionArray
Show
KeggGetGenesByKoClass

KeggGetGenesByKoClass

 

description of KeggGetGenesByKoClass

 

KEGG

 

string class_id, string org, int offset, int limit

 

DefinitionArray

 

class_id="00903", org="hsa", offset=1, limit=100

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetGenesByKoClass.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetGenesByKoClass.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetGenesByKoClass.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetGenesByKoClass.java

 

311

 

KeggGetGenesByMotifs

description of KeggGetGenesByMotifs

KEGG

StringArray motif_id_list, int offset, int limit

DefinitionArray
Show
KeggGetGenesByMotifs

KeggGetGenesByMotifs

 

description of KeggGetGenesByMotifs

 

KEGG

 

StringArray motif_id_list, int offset, int limit

 

DefinitionArray

 

motif_id_list=["pf:DnaJ", "ps:DNAJ_2"], offset=1, limit=10

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetGenesByMotifs.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetGenesByMotifs.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetGenesByMotifs.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetGenesByMotifs.java

 

312

 

KeggGetGenesByKo

description of KeggGetGenesByKo

KEGG

string ko_id, string org

DefinitionArray
Show
KeggGetGenesByKo

KeggGetGenesByKo

 

description of KeggGetGenesByKo

 

KEGG

 

string ko_id, string org

 

DefinitionArray

 

ko_id="ko:K00010", org="all"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetGenesByKo.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetGenesByKo.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetGenesByKo.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetGenesByKo.java

 

310

 

PdbjGashAsyncResult

description of PdbjGashAsyncResult

PDBj

string jobid

GashResult
Show
PdbjGashAsyncResult

PdbjGashAsyncResult

 

description of PdbjGashAsyncResult

 

PDBj

 

string jobid

 

GashResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashAsyncResult.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashAsyncResult.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashAsyncResult.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashAsyncResult.java

 

361

 

KeggGetReferencesByPathway

description of KeggGetReferencesByPathway

KEGG

string pathway_id

IntegerArray
Show
KeggGetReferencesByPathway

KeggGetReferencesByPathway

 

description of KeggGetReferencesByPathway

 

KEGG

 

string pathway_id

 

IntegerArray

 

pathway_id="path:map00010"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetReferencesByPathway.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetReferencesByPathway.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetReferencesByPathway.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetReferencesByPathway.java

 

341

 

KeggGetLinkdbBetweenDatabases

description of KeggGetLinkdbBetweenDatabases

KEGG

string from_db, string to_db, int offset, int limit

LinkDBRelationArray
Show
KeggGetLinkdbBetweenDatabases

KeggGetLinkdbBetweenDatabases

 

description of KeggGetLinkdbBetweenDatabases

 

KEGG

 

string from_db, string to_db, int offset, int limit

 

LinkDBRelationArray

 

from_db="eco", to_db="pathway", offset=1, limit=100

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetLinkdbBetweenDatabases.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetLinkdbBetweenDatabases.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetLinkdbBetweenDatabases.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetLinkdbBetweenDatabases.java

 

324

 

KeggGetLinkdbByEntry

description of KeggGetLinkdbByEntry

KEGG

string entry_id, string db, int offset, int limit

LinkDBRelationArray
Show
KeggGetLinkdbByEntry

KeggGetLinkdbByEntry

 

description of KeggGetLinkdbByEntry

 

KEGG

 

string entry_id, string db, int offset, int limit

 

LinkDBRelationArray

 

entry_id="eco:b0002", db="pathway", offset=1, limit=10

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetLinkdbByEntry.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetLinkdbByEntry.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetLinkdbByEntry.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetLinkdbByEntry.java

 

325

 

KeggGetMotifsByGene

description of KeggGetMotifsByGene

KEGG

string genes_id, string db

MotifResultArray
Show
KeggGetMotifsByGene

KeggGetMotifsByGene

 

description of KeggGetMotifsByGene

 

KEGG

 

string genes_id, string db

 

MotifResultArray

 

genes_id="eco:b0002", db="pfam"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetMotifsByGene.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetMotifsByGene.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetMotifsByGene.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetMotifsByGene.java

 

327

 

KeggGetElementsByPathway

description of KeggGetElementsByPathway

KEGG

string pathway_id

PathwayElementArray
Show
KeggGetElementsByPathway

KeggGetElementsByPathway

 

description of KeggGetElementsByPathway

 

KEGG

 

string pathway_id

 

PathwayElementArray

 

pathway_id="path:bsu00010"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetElementsByPathway.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetElementsByPathway.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetElementsByPathway.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetElementsByPathway.java

 

303

 

KeggGetElementRelationsByPathway

description of KeggGetElementRelationsByPathway

KEGG

string pathway_id

PathwayElementRelationArray
Show
KeggGetElementRelationsByPathway

KeggGetElementRelationsByPathway

 

description of KeggGetElementRelationsByPathway

 

KEGG

 

string pathway_id

 

PathwayElementRelationArray

 

pathway_id="path:bsu00010"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetElementRelationsByPathway.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetElementRelationsByPathway.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetElementRelationsByPathway.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetElementRelationsByPathway.java

 

302

 
368 Found
1 2 3 .. 25

Copyright (C) 2008 DBCLS