Method name Description Provider Input Output

PdbjGashAsync

description of PdbjGashAsync

PDBj

GashRequest gash_input

string

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PdbjGashAsync

PdbjGashAsync

 

description of PdbjGashAsync

 

PDBj

 

GashRequest gash_input

 

string

 

qpdbId="1pg0"
tpdbId="2sfa"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashAsync.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashAsync.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashAsync.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashAsync.java

 

360

 

PdbjSeqnavixSeqNeighbors

description of PdbjSeqnavixSeqNeighbors

PDBj

SeqnaviInput seq_neighbors_request

SeqnaviNeighborResult

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PdbjSeqnavixSeqNeighbors

PdbjSeqnavixSeqNeighbors

 

description of PdbjSeqnavixSeqNeighbors

 

PDBj

 

SeqnaviInput seq_neighbors_request

 

SeqnaviNeighborResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqNeighbors.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqNeighbors.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqNeighbors.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqNeighbors.java

 

364

 

PdbjSeqnavixSeqAlign

description of PdbjSeqnavixSeqAlign

PDBj

SeqnaviNeighbor seq_align_request

SeqnaviSuperpositionResult

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PdbjSeqnavixSeqAlign

PdbjSeqnavixSeqAlign

 

description of PdbjSeqnavixSeqAlign

 

PDBj

 

SeqnaviNeighbor seq_align_request

 

SeqnaviSuperpositionResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqAlign.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqAlign.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqAlign.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqAlign.java

 

363

 

PdbjSeqnavixSeqSupNer

description of PdbjSeqnavixSeqSupNer

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

Show
PdbjSeqnavixSeqSupNer

PdbjSeqnavixSeqSupNer

 

description of PdbjSeqnavixSeqSupNer

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupNer.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupNer.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupNer.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupNer.java

 

365

 

PdbjSeqnavixSeqSupRmsd

description of PdbjSeqnavixSeqSupRmsd

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

Show
PdbjSeqnavixSeqSupRmsd

PdbjSeqnavixSeqSupRmsd

 

description of PdbjSeqnavixSeqSupRmsd

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupRmsd.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupRmsd.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupRmsd.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupRmsd.java

 

366

 

KeggGetPathwaysByCompounds

description of KeggGetPathwaysByCompounds

KEGG

StringArray compound_id_list

StringArray

Show
KeggGetPathwaysByCompounds

KeggGetPathwaysByCompounds

 

description of KeggGetPathwaysByCompounds

 

KEGG

 

StringArray compound_id_list

 

StringArray

 

compound_id_list=["cpd:C00033", "cpd:C00158"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByCompounds.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByCompounds.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByCompounds.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByCompounds.java

 

330

 

KeggGetPathwaysByDrugs

description of KeggGetPathwaysByDrugs

KEGG

StringArray drug_id_list

StringArray

Show
KeggGetPathwaysByDrugs

KeggGetPathwaysByDrugs

 

description of KeggGetPathwaysByDrugs

 

KEGG

 

StringArray drug_id_list

 

StringArray

 

drug_id_list=["dr:D00204", "dr:D01053"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByDrugs.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByDrugs.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByDrugs.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByDrugs.java

 

331

 

KeggGetPathwaysByEnzymes

description of KeggGetPathwaysByEnzymes

KEGG

StringArray enzyme_id_list

StringArray

Show
KeggGetPathwaysByEnzymes

KeggGetPathwaysByEnzymes

 

description of KeggGetPathwaysByEnzymes

 

KEGG

 

StringArray enzyme_id_list

 

StringArray

 

enzyme_id_list=["ec:1.3.99.1"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByEnzymes.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByEnzymes.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByEnzymes.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByEnzymes.java

 

332

 

KeggGetPathwaysByGenes

description of KeggGetPathwaysByGenes

KEGG

StringArray genes_id_list

StringArray

Show
KeggGetPathwaysByGenes

KeggGetPathwaysByGenes

 

description of KeggGetPathwaysByGenes

 

KEGG

 

StringArray genes_id_list

 

StringArray

 

genes_id_list=["eco:b0077", "eco:b0078"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByGenes.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByGenes.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByGenes.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByGenes.java

 

333

 

KeggGetPathwaysByGlycans

description of KeggGetPathwaysByGlycans

KEGG

StringArray glycan_id_list

StringArray

Show
KeggGetPathwaysByGlycans

KeggGetPathwaysByGlycans

 

description of KeggGetPathwaysByGlycans

 

KEGG

 

StringArray glycan_id_list

 

StringArray

 

glycan_id_list=["gl:G00009", "gl:G00011"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByGlycans.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByGlycans.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByGlycans.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByGlycans.java

 

334

 

KeggGetPathwaysByKos

description of KeggGetPathwaysByKos

KEGG

StringArray kos_id_list, string org

StringArray

Show
KeggGetPathwaysByKos

KeggGetPathwaysByKos

 

description of KeggGetPathwaysByKos

 

KEGG

 

StringArray kos_id_list, string org

 

StringArray

 

kos_id_list=["ko:K00016", "ko:K00382"], org="hsa"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByKos.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByKos.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByKos.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByKos.java

 

335

 

KeggGetGenesByMotifs

description of KeggGetGenesByMotifs

KEGG

StringArray motif_id_list, int offset, int limit

DefinitionArray

Show
KeggGetGenesByMotifs

KeggGetGenesByMotifs

 

description of KeggGetGenesByMotifs

 

KEGG

 

StringArray motif_id_list, int offset, int limit

 

DefinitionArray

 

motif_id_list=["pf:DnaJ", "ps:DNAJ_2"], offset=1, limit=10

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetGenesByMotifs.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetGenesByMotifs.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetGenesByMotifs.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetGenesByMotifs.java

 

312

 

KeggGetPathwaysByReactions

description of KeggGetPathwaysByReactions

KEGG

StringArray reaction_id_list

StringArray

Show
KeggGetPathwaysByReactions

KeggGetPathwaysByReactions

 

description of KeggGetPathwaysByReactions

 

KEGG

 

StringArray reaction_id_list

 

StringArray

 

reaction_id_list=["rn:R00959", "rn:R02740", "rn:R00960", "rn:R01786"]

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggGetPathwaysByReactions.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggGetPathwaysByReactions.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggGetPathwaysByReactions.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggGetPathwaysByReactions.java

 

336

 

KeggSearchGlycansByMass

description of KeggSearchGlycansByMass

KEGG

double mass, double range

StringArray

Show
KeggSearchGlycansByMass

KeggSearchGlycansByMass

 

description of KeggSearchGlycansByMass

 

KEGG

 

double mass, double range

 

StringArray

 

mass=1200, range=0.5

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchGlycansByMass.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchGlycansByMass.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchGlycansByMass.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchGlycansByMass.java

 

358

 

KeggSearchCompoundsByMass

description of KeggSearchCompoundsByMass

KEGG

double mass, double range

StringArray

Show
KeggSearchCompoundsByMass

KeggSearchCompoundsByMass

 

description of KeggSearchCompoundsByMass

 

KEGG

 

double mass, double range

 

StringArray

 

mass=174.05, range=0.1

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchCompoundsByMass.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchCompoundsByMass.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchCompoundsByMass.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchCompoundsByMass.java

 

349