Method name Description Provider Input Output

PdbjXquery

description of PdbjXquery

PDBj

string xpath, string quantity

string

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PdbjXquery

PdbjXquery

 

description of PdbjXquery

 

PDBj

 

string xpath, string quantity

 

string

 

xpath="/datablock/entityCategory/entity", quantity="1"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjXquery.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjXquery.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjXquery.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjXquery.java

 

368

 

PdbjTxquery

description of PdbjTxquery

PDBj

string txquery, string quantity

string

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PdbjTxquery

PdbjTxquery

 

description of PdbjTxquery

 

PDBj

 

string txquery, string quantity

 

string

 

txquery = "for $b in input()/datablock/struct_confCategory/struct_conf
where $b/pdbx_PDB_helix_length=10
return
<result>
{$b/../../@datablockName}
{$b}
</result>", quantity="5"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjTxquery.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjTxquery.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjTxquery.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjTxquery.java

 

367

 

PdbjSeqnavixSeqSupRmsd

description of PdbjSeqnavixSeqSupRmsd

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

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PdbjSeqnavixSeqSupRmsd

PdbjSeqnavixSeqSupRmsd

 

description of PdbjSeqnavixSeqSupRmsd

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupRmsd.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupRmsd.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupRmsd.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupRmsd.java

 

366

 

PdbjSeqnavixSeqSupNer

description of PdbjSeqnavixSeqSupNer

PDBj

SeqnaviNeighbor seq_sup_rmsd_request

string

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PdbjSeqnavixSeqSupNer

PdbjSeqnavixSeqSupNer

 

description of PdbjSeqnavixSeqSupNer

 

PDBj

 

SeqnaviNeighbor seq_sup_rmsd_request

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqSupNer.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqSupNer.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqSupNer.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqSupNer.java

 

365

 

PdbjSeqnavixSeqNeighbors

description of PdbjSeqnavixSeqNeighbors

PDBj

SeqnaviInput seq_neighbors_request

SeqnaviNeighborResult

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PdbjSeqnavixSeqNeighbors

PdbjSeqnavixSeqNeighbors

 

description of PdbjSeqnavixSeqNeighbors

 

PDBj

 

SeqnaviInput seq_neighbors_request

 

SeqnaviNeighborResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqNeighbors.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqNeighbors.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqNeighbors.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqNeighbors.java

 

364

 

PdbjSeqnavixSeqAlign

description of PdbjSeqnavixSeqAlign

PDBj

SeqnaviNeighbor seq_align_request

SeqnaviSuperpositionResult

Show
PdbjSeqnavixSeqAlign

PdbjSeqnavixSeqAlign

 

description of PdbjSeqnavixSeqAlign

 

PDBj

 

SeqnaviNeighbor seq_align_request

 

SeqnaviSuperpositionResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjSeqnavixSeqAlign.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjSeqnavixSeqAlign.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjSeqnavixSeqAlign.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjSeqnavixSeqAlign.java

 

363

 

PdbjGashGashsup

description of PdbjGashGashsup

PDBj

string jobid, int supid

string

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PdbjGashGashsup

PdbjGashGashsup

 

description of PdbjGashGashsup

 

PDBj

 

string jobid, int supid

 

string

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashGashsup.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashGashsup.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashGashsup.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashGashsup.java

 

362

 

PdbjGashAsyncResult

description of PdbjGashAsyncResult

PDBj

string jobid

GashResult

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PdbjGashAsyncResult

PdbjGashAsyncResult

 

description of PdbjGashAsyncResult

 

PDBj

 

string jobid

 

GashResult

 

-

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashAsyncResult.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashAsyncResult.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashAsyncResult.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashAsyncResult.java

 

361

 

PdbjGashAsync

description of PdbjGashAsync

PDBj

GashRequest gash_input

string

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PdbjGashAsync

PdbjGashAsync

 

description of PdbjGashAsync

 

PDBj

 

GashRequest gash_input

 

string

 

qpdbId="1pg0"
tpdbId="2sfa"

 

output sample

 

http://togows.dbcls.jp/soap/clients/pdbj/ruby/PdbjGashAsync.rb

 

http://togows.dbcls.jp/soap/clients/pdbj/perl/PdbjGashAsync.pl

 

http://togows.dbcls.jp/soap/clients/pdbj/python/PdbjGashAsync.py

 

http://togows.dbcls.jp/soap/clients/pdbj/java/PdbjGashAsync.java

 

360

 

KeggSearchGlycansByName

description of KeggSearchGlycansByName

KEGG

string name

StringArray

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KeggSearchGlycansByName

KeggSearchGlycansByName

 

description of KeggSearchGlycansByName

 

KEGG

 

string name

 

StringArray

 

name="Paragloboside"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchGlycansByName.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchGlycansByName.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchGlycansByName.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchGlycansByName.java

 

359

 

KeggSearchGlycansByMass

description of KeggSearchGlycansByMass

KEGG

double mass, double range

StringArray

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KeggSearchGlycansByMass

KeggSearchGlycansByMass

 

description of KeggSearchGlycansByMass

 

KEGG

 

double mass, double range

 

StringArray

 

mass=1200, range=0.5

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchGlycansByMass.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchGlycansByMass.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchGlycansByMass.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchGlycansByMass.java

 

358

 

KeggSearchGlycansByKcam

description of KeggSearchGlycansByKcam

KEGG

string kcf, string program, string option, int offset, int limit

StructureAlignmentArray

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KeggSearchGlycansByKcam

KeggSearchGlycansByKcam

 

description of KeggSearchGlycansByKcam

 

KEGG

 

string kcf, string program, string option, int offset, int limit

 

StructureAlignmentArray

 

kcf="@file", program="gapped", option="local", offset=1, limit=5

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchGlycansByKcam.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchGlycansByKcam.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchGlycansByKcam.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchGlycansByKcam.java

 

357

 

KeggSearchGlycansByComposition

description of KeggSearchGlycansByComposition

KEGG

string composition

StringArray

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KeggSearchGlycansByComposition

KeggSearchGlycansByComposition

 

description of KeggSearchGlycansByComposition

 

KEGG

 

string composition

 

StringArray

 

composition="(Man)4 (GalNAc)1"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchGlycansByComposition.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchGlycansByComposition.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchGlycansByComposition.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchGlycansByComposition.java

 

356

 

KeggSearchDrugsBySubcomp

description of KeggSearchDrugsBySubcomp

KEGG

string mol, int offset, int limit

StructureAlignmentArray

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KeggSearchDrugsBySubcomp

KeggSearchDrugsBySubcomp

 

description of KeggSearchDrugsBySubcomp

 

KEGG

 

string mol, int offset, int limit

 

StructureAlignmentArray

 

mol="@file", offset=1, limit=5

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchDrugsBySubcomp.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchDrugsBySubcomp.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchDrugsBySubcomp.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchDrugsBySubcomp.java

 

355

 

KeggSearchDrugsByName

description of KeggSearchDrugsByName

KEGG

string name

StringArray

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KeggSearchDrugsByName

KeggSearchDrugsByName

 

description of KeggSearchDrugsByName

 

KEGG

 

string name

 

StringArray

 

name="tetracyclin"

 

output sample

 

http://togows.dbcls.jp/soap/clients/kegg/ruby/KeggSearchDrugsByName.rb

 

http://togows.dbcls.jp/soap/clients/kegg/perl/KeggSearchDrugsByName.pl

 

http://togows.dbcls.jp/soap/clients/kegg/python/KeggSearchDrugsByName.py

 

http://togows.dbcls.jp/soap/clients/kegg/java/KeggSearchDrugsByName.java

 

354