Contig-U03858-1 |
Contig ID |
Contig-U03858-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
998 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3296288 |
End point |
3295287 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U03858 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 9 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6. 8 |
Homology vs DNA |
Query= Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Contig-U03858-1Q.Seq.d (998 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU060821) Dictyostelium discoideum slug cDNA, clone SLB606. 1110 0.0 1 (AU033912) Dictyostelium discoideum slug cDNA, clone SLB606. 505 0.0 2 (AU072878) Dictyostelium discoideum slug cDNA, clone SSF294. 56 1e-12 2 (AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 58 3e-09 5 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.002 17 (AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 36 0.002 17 (AL035476) Plasmodium falciparum MAL4P3. 36 0.003 13 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.012 10 (EJ338128) 1092963494653 Global-Ocean-Sampling_GS-28-01-01-1... 30 0.029 4 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.041 13 (FH003897) CHO_OF204xe11f2.ab1 CHO_OF Nicotiana tabacum geno... 42 0.069 3 (FH362198) CHO_OF4694xg05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.077 3 (AX346604) Sequence 1675 from Patent WO0200928. 38 0.088 5 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.095 17 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.14 11 (AC119775) Rattus norvegicus clone CH230-464J18, WORKING DRA... 50 0.17 1 (AC114095) Rattus norvegicus clone CH230-93A11, *** SEQUENCI... 50 0.17 1 (CF150798) AGENCOURT_14927547 NICHD_XGC_Emb8 Xenopus (Silura... 50 0.17 1 (AE017308) Mycoplasma mobile 163K complete genome. 34 0.17 14 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.18 10 (CP001319) Borrelia garinii Far04 plasmid Far04_cp26, comple... 40 0.26 3 (EU545552) Clostridium perfringens chromosomal partitioning ... 46 0.30 3 (AC169029) Dasypus novemcinctus clone VMRC5-183P8, WORKING D... 36 0.39 7 (AX392737) Sequence 27 from Patent WO0212526. 42 0.54 5 (AR707084) Sequence 27 from patent US 6933145. 42 0.54 5 (AG908612) Oryza sativa Indica Group genomic DNA, BAC end se... 46 0.65 2 (AL513468) Mouse DNA sequence from clone RP23-104I6 on chrom... 48 0.66 1 (AC104901) Mus musculus chromosome 1, clone RP24-404L18, com... 48 0.66 1 (AC123266) Rattus norvegicus clone CH230-289N9, *** SEQUENCI... 48 0.66 1 (ER607767) 1093016287725 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.66 1 (EJ509546) 1095407053576 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.66 1 (EJ112407) 1092343160065 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.66 1 (CU624348) Theobroma cacao, mRNA sequence (KZ0ABE15YA22FM1). 48 0.66 1 (FJ011906) Carpinus tschonoskii voucher Fu99003 ribosomal pr... 40 0.73 2 (AJ927825) Theileria annulata EST, clone tam027c09_q1k. 38 0.79 2 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.80 12 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 34 0.84 11 (CF980029) rg84b10.y1 Meloidogyne hapla female SL1 pGEM Melo... 38 0.96 2 (AC218969) Macaca mulatta BAC CH250-550C4 (Children's Hospi... 46 1.0 5 (EA621363) Sequence 242 from patent US 7365185. 46 1.0 2 (AC169641) Bos taurus clone CH240-223J17, WORKING DRAFT SEQU... 36 1.2 6 (CU467856) Zebrafish DNA sequence from clone CH73-187P21 in ... 38 1.2 4 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 30 1.3 14 (AC165193) Eulemur macaco macaco clone CH273-193D9, complete... 44 1.5 3 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 34 1.6 7 (AC201298) Strongylocentrotus purpuratus clone R3-16H4, WORK... 40 1.7 5 (AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 1.8 9 (AX392733) Sequence 23 from Patent WO0212526. 42 1.9 6 (AR707080) Sequence 23 from patent US 6933145. 42 1.9 6 (CP000976) Borrelia duttonii Ly, complete genome. 38 1.9 17 (AP006852) Candida albicans genomic DNA, chromosome 7, compl... 34 1.9 16 (AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 34 2.0 10 (EJ417535) 1093012195408 Global-Ocean-Sampling_GS-28-01-01-1... 40 2.0 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 2.0 11 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 2.3 14 (CU582789) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.5 5 (CU462839) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.5 3 (AC113383) Homo sapiens chromosome 5 clone RP11-336F20, comp... 40 2.6 5 (CU694444) Zebrafish DNA sequence from clone CH73-282A8 in l... 46 2.6 1 (AC117816) Mus musculus chromosome 19, clone RP24-573C13, co... 46 2.6 1 (AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.6 1 (AC147538) Medicago truncatula clone mth2-135c7, complete se... 46 2.6 1 (AC105260) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 2.6 1 (AC098598) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 2.6 1 (EA704561) Sequence 83440 from patent US 7365185. 46 2.6 1 (AL589986) Human DNA sequence from clone RP11-107M16 on chro... 46 2.6 1 (CU856478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.6 1 (AC193097) Homo sapiens chromosome 1 clone WI2-1737E5, *** S... 46 2.6 1 (AC188374) Macaca mulatta chromosome UNK clone CH250-9H12, W... 46 2.6 1 (AC184419) Strongylocentrotus purpuratus clone R3-3089B19, W... 46 2.6 1 (AC179667) Strongylocentrotus purpuratus clone R3-1024B17, W... 46 2.6 1 (AZ543220) ENTEX61TF Entamoeba histolytica Sheared DNA Entam... 46 2.6 1 (AZ539141) ENTGG39TR Entamoeba histolytica Sheared DNA Entam... 46 2.6 1 (AZ538937) ENTGI06TF Entamoeba histolytica Sheared DNA Entam... 46 2.6 1 (EI509627) MUGQ_CH252P520B08T7_GL507_032 CHORI-252 Vervet Mo... 46 2.6 1 (DX557610) GH_MBb0032J03r GH_MBb Gossypium hirsutum genomic ... 46 2.6 1 (DE368943) Bombyx mori genomic DNA, BAC clone:BET_625_B10. 46 2.6 1 (CT543160) A BAC library has been constructed from cultivar ... 46 2.6 1 (EC824727) SME00003899 esmbsro2 Sawyeria marylandensis cDNA,... 46 2.6 1 (CV861312) gonad_EST08788 Embryonic gonad cDNA Library Gallu... 46 2.6 1 (AM774597) Clostridium sp. partial ORF for putative 23S rRNA... 46 2.6 1 (AJ843212) Clostridium sp. RKD ORF1 for hypothetical protein... 46 2.6 1 (AE015927) Clostridium tetani E88, complete genome. 46 2.6 1 (AC194503) Colobus guereza clone CH272-204K16, WORKING DRAFT... 38 2.7 6 (EU556754) Tetranychus urticae strain BR-VL mitochondrion, c... 30 2.7 6 (EU345430) Tetranychus urticae mitochondrion, complete genome. 30 2.7 6 (CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 2.9 18 (DU384876) 1098313108864 CHORI-243 Ovis aries genomic clone ... 40 3.0 2 (AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 34 3.2 9 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 30 3.4 11 (AY863213) Smittium culisetae mitochondrion, complete genome. 38 3.5 6 (CT737415) Pig DNA sequence from clone CH242-158E1 on chromo... 38 3.8 5 (CT025864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.9 5 (AC173837) Strongylocentrotus purpuratus clone R3-3006C23, W... 34 4.2 6 (AC128640) Homo sapiens clone RP11-333D8, *** SEQUENCING IN ... 36 4.5 9 (AC162260) Bos taurus clone CH240-100K18, WORKING DRAFT SEQU... 32 4.8 2 (AM815811) Nicotiana tabacum EST, clone nt002169016. 42 5.1 2 (CU466504) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.2 5 (CU915742) S.lycopersicum DNA sequence from clone LE_HBa-107... 38 5.4 4 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 32 5.6 11 (AL844509) Plasmodium falciparum chromosome 13. 34 5.7 16 (CP000728) Clostridium botulinum F str. Langeland, complete ... 36 5.7 16 (AC106735) Homo sapiens chromosome 5 clone CTD-2380K8, WORKI... 34 6.1 6 (AC172084) Bos taurus clone CH240-305P14, WORKING DRAFT SEQU... 38 6.1 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 6.1 16 (AC188937) Canis Familiaris chromosome 5, clone XX-508J10, c... 34 6.3 5 (AC188629) Canis Familiaris, clone XX-224D5, complete sequence. 34 6.3 5 (CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 6.3 19 (BX255931) Zebrafish DNA sequence from clone CH211-195B2 in ... 36 6.3 7 (EH011324) USDA-FP_184335 Lysiphlebus testaceipes adult whol... 34 6.5 2 (EJ173967) 1092344093432 Global-Ocean-Sampling_GS-27-01-01-1... 32 6.6 2 (CL580563) OB__Ba0040N13.r OB__Ba Oryza brachyantha genomic ... 32 6.6 2 (CL599775) OB__Ba0066B10.r OB__Ba Oryza brachyantha genomic ... 32 6.6 2 (AC020294) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 6.7 2 (EJ261204) 1095349040444 Global-Ocean-Sampling_GS-27-01-01-1... 38 6.9 2 (BX927228) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 7.2 7 (AM640088) Entamoeba dispar GSS, clone dispar71g10.p1k. 38 7.4 2 (EH014960) USDA-FP_187608 Lysiphlebus testaceipes adult whol... 34 7.5 2 (DU391657) 1098268381841 CHORI-243 Ovis aries genomic clone ... 34 7.5 2 (FP102871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 7.5 8 (AC106821) Homo sapiens chromosome 5 clone RP11-730N24, comp... 32 7.6 8 (EJ343079) 1092963528777 Global-Ocean-Sampling_GS-28-01-01-1... 36 7.8 2 (EJ511774) 1095407096558 Global-Ocean-Sampling_GS-28-01-01-1... 36 7.8 2 (EK381960) 1095469465111 Global-Ocean-Sampling_GS-31-01-01-1... 42 8.0 2 (AL591403) Human DNA sequence from clone RP11-108G8 on chrom... 38 8.1 6 (FJ011899) Carpinus orientalis voucher Georgia, Kartli s.n. ... 40 8.1 2 (AC180540) Strongylocentrotus purpuratus clone R3-3098M2, WO... 42 8.2 6 (EJ134448) 1092343587492 Global-Ocean-Sampling_GS-27-01-01-1... 42 8.2 2 (AC016077) Homo sapiens clone RP11-23J22, WORKING DRAFT SEQU... 40 8.3 4 (EE261864) F09_F09ff4c18_pDNRf_514541 Myzus persicae, line F... 30 8.3 3 (EJ340348) 1092963511550 Global-Ocean-Sampling_GS-28-01-01-1... 42 8.4 2 (ER591422) 1093016199417 Global-Ocean-Sampling_GS-36-01-01-2... 42 8.6 2 (AC027157) Homo sapiens chromosome 11, clone RP11-64I17, com... 40 8.7 4 (FJ011905) Carpinus tientaiensis voucher Fu99006 ribosomal p... 40 8.9 2 (AL358275) Human chromosome 14 DNA sequence BAC R-666E17 of ... 40 8.9 6 (AC230382) Bos taurus clone CH240-510J17, WORKING DRAFT SEQU... 38 9.0 9 (CZ982154) 198010 Tomato MboI BAC Library Solanum lycopersic... 38 9.1 2 (ER448941) 1092963841707 Global-Ocean-Sampling_GS-35-01-01-1... 42 9.1 2 (AM637130) Entamoeba dispar GSS, clone dispar43d03.q1k. 34 9.2 3 (AC173028) Bos taurus clone CH240-279G8, WORKING DRAFT SEQUE... 40 9.3 8 (FJ011904) Carpinus sp. Tibet 1942 rpl16 gene, partial seque... 40 9.7 2 (AC190047) Macaca mulatta clone CH250-452F20, WORKING DRAFT ... 44 9.8 4 (AC098951) Rattus norvegicus clone CH230-173E15, WORKING DRA... 44 9.8 3 (CR936974) Zebrafish DNA sequence from clone DKEY-8N23 in li... 36 9.8 7 (CU138505) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.8 5 (FJ011885) Carpinus betulus voucher CS86117 ribosomal protei... 40 9.9 2 (FJ011887) Carpinus betulus voucher H. Sun s.n. ribosomal pr... 40 10.0 2
>(AU060821) Dictyostelium discoideum slug cDNA, clone SLB606. Length = 560
Score = 1110 bits (560), Expect = 0.0 Identities = 560/560 (100%) Strand = Plus / Plus
Query: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60
Query: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120
Query: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180
Query: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240
Query: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300
Query: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360
Query: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420
Query: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480
Query: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540
Query: 541 ttggtggtgttaccagagat 560 |||||||||||||||||||| Sbjct: 541 ttggtggtgttaccagagat 560
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 1,289,698,209 Number of extensions: 87397597 Number of successful extensions: 7534845 Number of sequences better than 10.0: 148 Length of query: 998 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 974 Effective length of database: 99,340,224,878 Effective search space: 96757379031172 Effective search space used: 96757379031172 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |