Contig-U03858-1
Contig ID Contig-U03858-1
Contig update 2002. 9.13
Contig sequence
>Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Contig-U03858-1Q.Seq.d
GCCAATTCCAAAAAAGATTAAATGCTAAATATTTATTGATGAAATCTGAC
CCATACTATTCACAAAAGTATCCAGATAGTAGTTTAAATAATCACCCTTT
TCATCATATAGTATTACCATATAAATTACCAACAGTTTTAGATATAATAC
AAGATAGTTTGGAGAATGTCAAAAATGTTGAATTAAAGGAAGATCAAACA
CCATTGTTTTACAGTTTATGTCATGTTTTGACAGAGTTACCAATAATCGG
TGATAATATATTATTAAAAGCTGGTACACAATATCATTCAAATCTATTCG
TTTCTCCTACAAGCGAAGTACCAAAAATATCAATAACTGAATATTTAACT
AGACTTGTAAAATTCTCACCATGTTCCAAAGAATGTTTCATTATGATTAT
AGTTTATATTGATAGAATTATTTCAAAAACAAATTTTATTATAAATAGTT
TAAATATTCATAGATTATTAATAACTGCAATTATGGTTGCTTCTAAATAT
ATAGATGATATCTTTTATAATAATGAATACTATAGTCATATTGGTGGTGT
TACCAGAGATGAATTAAATAGATTAGAAATTTCATTTTTAAATTTACTAC
AATTCGATCTTTCATGTCCATTACCGGATTACTTGGATTATTTCTCAAAA
TTGGATTCATTTGTTAGTAAATTAAGAAGACAAAATAAAAAAGACTCTGT
CATTAAAATTCATCACCATTCTGTAAATCAACAATATCAACAACAACAAC
AAATGCAAATGCAGCAACAACAACAAATGCAACAACAAATGCAACAACAA
CAATATCAACAACATGCCCAACAACAACAATATCAACAAATTCAATCACC
ACAAAGAGATTCAAGATCAAATATTTCAAAAATAATAAATCCAATTAATG
ATAATAATTCTCCAAGTATGGTAACATCTACAAGAAGAAAATCAATAACA
CAACAACCTCAAACTCAATTTANTCTTCCAAAATGTATTTCTTAAAAA

Gap no gap
Contig length 998
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3296288
End point 3295287
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U03858
List of clone(s)

est1=SLB606E,1,999
Translated Amino Acid sequence
QFQKRLNAKYLLMKSDPYYSQKYPDSSLNNHPFHHIVLPYKLPTVLDIIQDSLENVKNVE
LKEDQTPLFYSLCHVLTELPIIGDNILLKAGTQYHSNLFVSPTSEVPKISITEYLTRLVK
FSPCSKECFIMIIVYIDRIISKTNFIINSLNIHRLLITAIMVASKYIDDIFYNNEYYSHI
GGVTRDELNRLEISFLNLLQFDLSCPLPDYLDYFSKLDSFVSKLRRQNKKDSVIKIHHHS
VNQQYQQQQQMQMQQQQQMQQQMQQQQYQQHAQQQQYQQIQSPQRDSRSNISKIINPIND
NNSPSMVTSTRRKSITQQPQTQFXLPKCIS*k


Translated Amino Acid sequence (All Frames)
Frame A:
anskkd*mlniy**nlthtihksiqivv*iitlfii*yyhinyqqf*i*ykivwrmskml
n*rkikhhcftvyvmf*qsyq*sviiyy*klvhniiqiysfllqakyqkyq*lni*ldl*
nshhvpknvsl*l*filielfqkqill*iv*ifidy**lqlwlllni*misfiimntivi
lvvlpemn*id*kfhf*iyynsifhvhyritwiisqnwihllvn*edkikktlslkfiti
l*inninnnnkckcsnnnkcnnkcnnnninnmpnnnninkfnhhkeiqdqifqk**iqlm
iiilqvw*hlqeenq*hnnlklnlxfqnvflk


Frame B:
pipkkikc*ifidei*pilftkvsr**fk*spfssysiti*itnsfryntr*fgecqkc*
ikgrsntivlqfmscfdrvtnnr**yiikswytisfksirfsykrstkninn*ifn*tck
iltmfqrmfhydysly**nyfknkfyyk*fkys*iinncnygcf*iyr*yll***il*sy
wwcyqr*ik*irnfifkfttirsfmsitgllglflkigfic**ikktk*krlch*nsspf
ckstisttttnanaatttnattnatttisttcptttistnsittkrfkikyfknnksn**
**fskygniykkkinntttsnsixsskmyflk


Frame C:
QFQKRLNAKYLLMKSDPYYSQKYPDSSLNNHPFHHIVLPYKLPTVLDIIQDSLENVKNVE
LKEDQTPLFYSLCHVLTELPIIGDNILLKAGTQYHSNLFVSPTSEVPKISITEYLTRLVK
FSPCSKECFIMIIVYIDRIISKTNFIINSLNIHRLLITAIMVASKYIDDIFYNNEYYSHI
GGVTRDELNRLEISFLNLLQFDLSCPLPDYLDYFSKLDSFVSKLRRQNKKDSVIKIHHHS
VNQQYQQQQQMQMQQQQQMQQQMQQQQYQQHAQQQQYQQIQSPQRDSRSNISKIINPIND
NNSPSMVTSTRRKSITQQPQTQFXLPKCIS*k


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03858-1 (Contig-U03858-1Q)
/CSM_Contig/Contig-U03858-1Q.Seq.d
(998 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Conti... 1461 0.0
Contig-U05105-1 (Contig-U05105-1Q) /CSM_Contig/Conti... 72 1e-12
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U09968-1 (Contig-U09968-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12195-1 (Contig-U12195-1Q) /CSM_Contig/Conti... 36 0.070
Contig-U11734-1 (Contig-U11734-1Q) /CSM_Contig/Conti... 36 0.070
Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Conti... 36 0.070
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti... 36 0.070
Contig-U08587-1 (Contig-U08587-1Q) /CSM_Contig/Conti... 36 0.070

>Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Contig-U03858-1Q.Seq.d
Length = 998

Score = 1461 bits (737), Expect = 0.0
Identities = 737/737 (100%)
Strand = Plus / Plus


Query: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60


Query: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120


Query: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180


Query: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240


Query: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300


Query: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360


Query: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420


Query: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480


Query: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540


Query: 541 ttggtggtgttaccagagatgaattaaatagattagaaatttcatttttaaatttactac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtggtgttaccagagatgaattaaatagattagaaatttcatttttaaatttactac 600


Query: 601 aattcgatctttcatgtccattaccggattacttggattatttctcaaaattggattcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aattcgatctttcatgtccattaccggattacttggattatttctcaaaattggattcat 660


Query: 661 ttgttagtaaattaagaagacaaaataaaaaagactctgtcattaaaattcatcaccatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgttagtaaattaagaagacaaaataaaaaagactctgtcattaaaattcatcaccatt 720


Query: 721 ctgtaaatcaacaatat 737
|||||||||||||||||
Sbjct: 721 ctgtaaatcaacaatat 737


Score = 280 bits (141), Expect = 3e-75
Identities = 144/144 (100%)
Strand = Plus / Plus


Query: 855 agagattcaagatcaaatatttcaaaaataataaatccaattaatgataataattctcca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 agagattcaagatcaaatatttcaaaaataataaatccaattaatgataataattctcca 914


Query: 915 agtatggtaacatctacaagaagaaaatcaataacacaacaacctcaaactcaatttant 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agtatggtaacatctacaagaagaaaatcaataacacaacaacctcaaactcaatttant 974


Query: 975 cttccaaaatgtatttcttaaaaa 998
||||||||||||||||||||||||
Sbjct: 975 cttccaaaatgtatttcttaaaaa 998


>Contig-U05105-1 (Contig-U05105-1Q) /CSM_Contig/Contig-U05105-1Q.Seq.d
Length = 585

Score = 71.9 bits (36), Expect = 1e-12
Identities = 126/156 (80%)
Strand = Plus / Plus


Query: 369 ccatgttccaaagaatgtttcattatgattatagtttatattgatagaattatttcaaaa 428
|||||||| |||||||||||||| || || || | |||||||||||| | ||| ||||
Sbjct: 11 ccatgttcaaaagaatgtttcatcattatattaatgtatattgatagattaattcaaaaa 70


Query: 429 acaaattttattataaatagtttaaatattcatagattattaataactgcaattatggtt 488
| |||||| ||| ||||||||| ||||| |||||| | ||||| || || |||||
Sbjct: 71 agaaatttcattgtaaatagttataatatccatagaattttaatcacctgtgttttggtt 130


Query: 489 gcttctaaatatatagatgatatcttttataataat 524
||| | |||||| |||||||||| ||||||||||||
Sbjct: 131 gctgcaaaatatttagatgatattttttataataat 166


>Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Contig-U12780-1Q.Seq.d
Length = 617

Score = 38.2 bits (19), Expect = 0.018
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 255 aatatattattaaaagctggtac 277
||||| |||||||||||||||||
Sbjct: 398 aatattttattaaaagctggtac 420


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,042
Number of Sequences: 6905
Number of extensions: 23042
Number of successful extensions: 2237
Number of sequences better than 10.0: 215
length of query: 998
length of database: 5,674,871
effective HSP length: 16
effective length of query: 982
effective length of database: 5,564,391
effective search space: 5464231962
effective search space used: 5464231962
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 8
Homology vs DNA
Query= Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Contig-U03858-1Q.Seq.d
(998 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060821) Dictyostelium discoideum slug cDNA, clone SLB606. 1110 0.0 1
(AU033912) Dictyostelium discoideum slug cDNA, clone SLB606. 505 0.0 2
(AU072878) Dictyostelium discoideum slug cDNA, clone SSF294. 56 1e-12 2
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 58 3e-09 5
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.002 17
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 36 0.002 17
(AL035476) Plasmodium falciparum MAL4P3. 36 0.003 13
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.012 10
(EJ338128) 1092963494653 Global-Ocean-Sampling_GS-28-01-01-1... 30 0.029 4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.041 13
(FH003897) CHO_OF204xe11f2.ab1 CHO_OF Nicotiana tabacum geno... 42 0.069 3
(FH362198) CHO_OF4694xg05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.077 3
(AX346604) Sequence 1675 from Patent WO0200928. 38 0.088 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.095 17
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.14 11
(AC119775) Rattus norvegicus clone CH230-464J18, WORKING DRA... 50 0.17 1
(AC114095) Rattus norvegicus clone CH230-93A11, *** SEQUENCI... 50 0.17 1
(CF150798) AGENCOURT_14927547 NICHD_XGC_Emb8 Xenopus (Silura... 50 0.17 1
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.17 14
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.18 10
(CP001319) Borrelia garinii Far04 plasmid Far04_cp26, comple... 40 0.26 3
(EU545552) Clostridium perfringens chromosomal partitioning ... 46 0.30 3
(AC169029) Dasypus novemcinctus clone VMRC5-183P8, WORKING D... 36 0.39 7
(AX392737) Sequence 27 from Patent WO0212526. 42 0.54 5
(AR707084) Sequence 27 from patent US 6933145. 42 0.54 5
(AG908612) Oryza sativa Indica Group genomic DNA, BAC end se... 46 0.65 2
(AL513468) Mouse DNA sequence from clone RP23-104I6 on chrom... 48 0.66 1
(AC104901) Mus musculus chromosome 1, clone RP24-404L18, com... 48 0.66 1
(AC123266) Rattus norvegicus clone CH230-289N9, *** SEQUENCI... 48 0.66 1
(ER607767) 1093016287725 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.66 1
(EJ509546) 1095407053576 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.66 1
(EJ112407) 1092343160065 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.66 1
(CU624348) Theobroma cacao, mRNA sequence (KZ0ABE15YA22FM1). 48 0.66 1
(FJ011906) Carpinus tschonoskii voucher Fu99003 ribosomal pr... 40 0.73 2
(AJ927825) Theileria annulata EST, clone tam027c09_q1k. 38 0.79 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.80 12
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 34 0.84 11
(CF980029) rg84b10.y1 Meloidogyne hapla female SL1 pGEM Melo... 38 0.96 2
(AC218969) Macaca mulatta BAC CH250-550C4 (Children's Hospi... 46 1.0 5
(EA621363) Sequence 242 from patent US 7365185. 46 1.0 2
(AC169641) Bos taurus clone CH240-223J17, WORKING DRAFT SEQU... 36 1.2 6
(CU467856) Zebrafish DNA sequence from clone CH73-187P21 in ... 38 1.2 4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 30 1.3 14
(AC165193) Eulemur macaco macaco clone CH273-193D9, complete... 44 1.5 3
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 34 1.6 7
(AC201298) Strongylocentrotus purpuratus clone R3-16H4, WORK... 40 1.7 5
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 1.8 9
(AX392733) Sequence 23 from Patent WO0212526. 42 1.9 6
(AR707080) Sequence 23 from patent US 6933145. 42 1.9 6
(CP000976) Borrelia duttonii Ly, complete genome. 38 1.9 17
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 34 1.9 16
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 34 2.0 10
(EJ417535) 1093012195408 Global-Ocean-Sampling_GS-28-01-01-1... 40 2.0 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 2.0 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 2.3 14
(CU582789) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.5 5
(CU462839) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.5 3
(AC113383) Homo sapiens chromosome 5 clone RP11-336F20, comp... 40 2.6 5
(CU694444) Zebrafish DNA sequence from clone CH73-282A8 in l... 46 2.6 1
(AC117816) Mus musculus chromosome 19, clone RP24-573C13, co... 46 2.6 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.6 1
(AC147538) Medicago truncatula clone mth2-135c7, complete se... 46 2.6 1
(AC105260) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 2.6 1
(AC098598) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 2.6 1
(EA704561) Sequence 83440 from patent US 7365185. 46 2.6 1
(AL589986) Human DNA sequence from clone RP11-107M16 on chro... 46 2.6 1
(CU856478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.6 1
(AC193097) Homo sapiens chromosome 1 clone WI2-1737E5, *** S... 46 2.6 1
(AC188374) Macaca mulatta chromosome UNK clone CH250-9H12, W... 46 2.6 1
(AC184419) Strongylocentrotus purpuratus clone R3-3089B19, W... 46 2.6 1
(AC179667) Strongylocentrotus purpuratus clone R3-1024B17, W... 46 2.6 1
(AZ543220) ENTEX61TF Entamoeba histolytica Sheared DNA Entam... 46 2.6 1
(AZ539141) ENTGG39TR Entamoeba histolytica Sheared DNA Entam... 46 2.6 1
(AZ538937) ENTGI06TF Entamoeba histolytica Sheared DNA Entam... 46 2.6 1
(EI509627) MUGQ_CH252P520B08T7_GL507_032 CHORI-252 Vervet Mo... 46 2.6 1
(DX557610) GH_MBb0032J03r GH_MBb Gossypium hirsutum genomic ... 46 2.6 1
(DE368943) Bombyx mori genomic DNA, BAC clone:BET_625_B10. 46 2.6 1
(CT543160) A BAC library has been constructed from cultivar ... 46 2.6 1
(EC824727) SME00003899 esmbsro2 Sawyeria marylandensis cDNA,... 46 2.6 1
(CV861312) gonad_EST08788 Embryonic gonad cDNA Library Gallu... 46 2.6 1
(AM774597) Clostridium sp. partial ORF for putative 23S rRNA... 46 2.6 1
(AJ843212) Clostridium sp. RKD ORF1 for hypothetical protein... 46 2.6 1
(AE015927) Clostridium tetani E88, complete genome. 46 2.6 1
(AC194503) Colobus guereza clone CH272-204K16, WORKING DRAFT... 38 2.7 6
(EU556754) Tetranychus urticae strain BR-VL mitochondrion, c... 30 2.7 6
(EU345430) Tetranychus urticae mitochondrion, complete genome. 30 2.7 6
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 2.9 18
(DU384876) 1098313108864 CHORI-243 Ovis aries genomic clone ... 40 3.0 2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 34 3.2 9
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 30 3.4 11
(AY863213) Smittium culisetae mitochondrion, complete genome. 38 3.5 6
(CT737415) Pig DNA sequence from clone CH242-158E1 on chromo... 38 3.8 5
(CT025864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.9 5
(AC173837) Strongylocentrotus purpuratus clone R3-3006C23, W... 34 4.2 6
(AC128640) Homo sapiens clone RP11-333D8, *** SEQUENCING IN ... 36 4.5 9
(AC162260) Bos taurus clone CH240-100K18, WORKING DRAFT SEQU... 32 4.8 2
(AM815811) Nicotiana tabacum EST, clone nt002169016. 42 5.1 2
(CU466504) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 5.2 5
(CU915742) S.lycopersicum DNA sequence from clone LE_HBa-107... 38 5.4 4
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 32 5.6 11
(AL844509) Plasmodium falciparum chromosome 13. 34 5.7 16
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 5.7 16
(AC106735) Homo sapiens chromosome 5 clone CTD-2380K8, WORKI... 34 6.1 6
(AC172084) Bos taurus clone CH240-305P14, WORKING DRAFT SEQU... 38 6.1 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 6.1 16
(AC188937) Canis Familiaris chromosome 5, clone XX-508J10, c... 34 6.3 5
(AC188629) Canis Familiaris, clone XX-224D5, complete sequence. 34 6.3 5
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 6.3 19
(BX255931) Zebrafish DNA sequence from clone CH211-195B2 in ... 36 6.3 7
(EH011324) USDA-FP_184335 Lysiphlebus testaceipes adult whol... 34 6.5 2
(EJ173967) 1092344093432 Global-Ocean-Sampling_GS-27-01-01-1... 32 6.6 2
(CL580563) OB__Ba0040N13.r OB__Ba Oryza brachyantha genomic ... 32 6.6 2
(CL599775) OB__Ba0066B10.r OB__Ba Oryza brachyantha genomic ... 32 6.6 2
(AC020294) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 6.7 2
(EJ261204) 1095349040444 Global-Ocean-Sampling_GS-27-01-01-1... 38 6.9 2
(BX927228) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 7.2 7
(AM640088) Entamoeba dispar GSS, clone dispar71g10.p1k. 38 7.4 2
(EH014960) USDA-FP_187608 Lysiphlebus testaceipes adult whol... 34 7.5 2
(DU391657) 1098268381841 CHORI-243 Ovis aries genomic clone ... 34 7.5 2
(FP102871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 7.5 8
(AC106821) Homo sapiens chromosome 5 clone RP11-730N24, comp... 32 7.6 8
(EJ343079) 1092963528777 Global-Ocean-Sampling_GS-28-01-01-1... 36 7.8 2
(EJ511774) 1095407096558 Global-Ocean-Sampling_GS-28-01-01-1... 36 7.8 2
(EK381960) 1095469465111 Global-Ocean-Sampling_GS-31-01-01-1... 42 8.0 2
(AL591403) Human DNA sequence from clone RP11-108G8 on chrom... 38 8.1 6
(FJ011899) Carpinus orientalis voucher Georgia, Kartli s.n. ... 40 8.1 2
(AC180540) Strongylocentrotus purpuratus clone R3-3098M2, WO... 42 8.2 6
(EJ134448) 1092343587492 Global-Ocean-Sampling_GS-27-01-01-1... 42 8.2 2
(AC016077) Homo sapiens clone RP11-23J22, WORKING DRAFT SEQU... 40 8.3 4
(EE261864) F09_F09ff4c18_pDNRf_514541 Myzus persicae, line F... 30 8.3 3
(EJ340348) 1092963511550 Global-Ocean-Sampling_GS-28-01-01-1... 42 8.4 2
(ER591422) 1093016199417 Global-Ocean-Sampling_GS-36-01-01-2... 42 8.6 2
(AC027157) Homo sapiens chromosome 11, clone RP11-64I17, com... 40 8.7 4
(FJ011905) Carpinus tientaiensis voucher Fu99006 ribosomal p... 40 8.9 2
(AL358275) Human chromosome 14 DNA sequence BAC R-666E17 of ... 40 8.9 6
(AC230382) Bos taurus clone CH240-510J17, WORKING DRAFT SEQU... 38 9.0 9
(CZ982154) 198010 Tomato MboI BAC Library Solanum lycopersic... 38 9.1 2
(ER448941) 1092963841707 Global-Ocean-Sampling_GS-35-01-01-1... 42 9.1 2
(AM637130) Entamoeba dispar GSS, clone dispar43d03.q1k. 34 9.2 3
(AC173028) Bos taurus clone CH240-279G8, WORKING DRAFT SEQUE... 40 9.3 8
(FJ011904) Carpinus sp. Tibet 1942 rpl16 gene, partial seque... 40 9.7 2
(AC190047) Macaca mulatta clone CH250-452F20, WORKING DRAFT ... 44 9.8 4
(AC098951) Rattus norvegicus clone CH230-173E15, WORKING DRA... 44 9.8 3
(CR936974) Zebrafish DNA sequence from clone DKEY-8N23 in li... 36 9.8 7
(CU138505) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.8 5
(FJ011885) Carpinus betulus voucher CS86117 ribosomal protei... 40 9.9 2
(FJ011887) Carpinus betulus voucher H. Sun s.n. ribosomal pr... 40 10.0 2

>(AU060821) Dictyostelium discoideum slug cDNA, clone SLB606.
Length = 560

Score = 1110 bits (560), Expect = 0.0
Identities = 560/560 (100%)
Strand = Plus / Plus


Query: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaattccaaaaaagattaaatgctaaatatttattgatgaaatctgacccatactatt 60


Query: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaaaagtatccagatagtagtttaaataatcacccttttcatcatatagtattaccat 120


Query: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataaattaccaacagttttagatataatacaagatagtttggagaatgtcaaaaatgttg 180


Query: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattaaaggaagatcaaacaccattgttttacagtttatgtcatgttttgacagagttac 240


Query: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caataatcggtgataatatattattaaaagctggtacacaatatcattcaaatctattcg 300


Query: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctcctacaagcgaagtaccaaaaatatcaataactgaatatttaactagacttgtaa 360


Query: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattctcaccatgttccaaagaatgtttcattatgattatagtttatattgatagaatta 420


Query: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttcaaaaacaaattttattataaatagtttaaatattcatagattattaataactgcaa 480


Query: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttatggttgcttctaaatatatagatgatatcttttataataatgaatactatagtcata 540


Query: 541 ttggtggtgttaccagagat 560
||||||||||||||||||||
Sbjct: 541 ttggtggtgttaccagagat 560

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,289,698,209
Number of extensions: 87397597
Number of successful extensions: 7534845
Number of sequences better than 10.0: 148
Length of query: 998
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 974
Effective length of database: 99,340,224,878
Effective search space: 96757379031172
Effective search space used: 96757379031172
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Contig-U03858-1Q.Seq.d
(998 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM910992_144(AM910992|pid:none) Plasmodium knowlesi strain H chr... 118 3e-25
CP001142_399(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 116 1e-24
BT052159_1(BT052159|pid:none) Medicago truncatula clone MTYF9_FA... 112 2e-23
EF144431_1(EF144431|pid:none) Populus trichocarpa clone PX0019_G... 112 2e-23
AJ416697_1(AJ416697|pid:none) Plasmodium falciparum cyc-3 gene f... 112 2e-23
(Q9FKF6) RecName: Full=Cyclin-U4-3; Short=CycU4;3; AltN... 112 3e-23
AX027424_1(AX027424|pid:none) Sequence 35 from Patent WO0036124. 112 3e-23
(Q9LY16) RecName: Full=Cyclin-U4-2; Short=CycU4;2; AltN... 110 1e-22
(O80513) RecName: Full=Cyclin-U4-1; Short=CycU4;1; AltN... 109 2e-22
(Q8LB60) RecName: Full=Cyclin-U3-1; Short=CycU3;1; AltN... 107 5e-22
AY087409_1(AY087409|pid:none) Arabidopsis thaliana clone 35075 m... 107 5e-22
AX027392_1(AX027392|pid:none) Sequence 3 from Patent WO0036124. 107 5e-22
CR940353_287(CR940353|pid:none) Theileria annulata strain Ankara... 107 8e-22
AX027426_1(AX027426|pid:none) Sequence 37 from Patent WO0036124. 106 1e-21
AF237587_1(AF237587|pid:none) Trypanosoma cruzi cyclin 6 (cyc6) ... 105 3e-21
EU964858_1(EU964858|pid:none) Zea mays clone 282139 PREG-like pr... 104 4e-21
(Q75HV0) RecName: Full=Cyclin-P3-1; Short=CycP3;1; &AC... 103 1e-20
EU036411_1(EU036411|pid:none) Glycine soja clone SN207.p2 putati... 102 2e-20
(O42979) RecName: Full=PHO85 cyclin-like protein C20F10.10; &AL... 101 5e-20
BT052559_1(BT052559|pid:none) Medicago truncatula clone MTYFD_FE... 100 8e-20
FN392319_1010(FN392319|pid:none) Pichia pastoris GS115 chromosom... 100 8e-20
CT005269_87(CT005269|pid:none) Leishmania major strain Friedlin,... 100 1e-19
EF657230_7(EF657230|pid:none) Cucumis melo clone BAC 13J4, compl... 100 1e-19
AM502250_123(AM502250|pid:none) Leishmania infantum chromosome 32. 100 1e-19
CR382136_620(CR382136|pid:none) Debaryomyces hansenii strain CBS... 99 2e-19
AL606728_8(AL606728|pid:none) Oryza sativa genomic DNA, chromoso... 97 7e-19
FM992688_633(FM992688|pid:none) Candida dubliniensis CD36 chromo... 97 9e-19
AJ307662_4(AJ307662|pid:none) Oryza sativa genomic DNA fragment,... 96 1e-18
AK108827_1(AK108827|pid:none) Oryza sativa Japonica Group cDNA c... 96 1e-18
(Q9M205) RecName: Full=Cyclin-U2-2; Short=CycU2;2; AltN... 94 7e-18
(P40186) RecName: Full=PHO85 cyclin-7; AltName: Full=PHO85-assoc... 94 7e-18
(Q9SHD3) RecName: Full=Cyclin-U2-1; Short=CycU2;1; AltN... 93 2e-17
CR380959_538(CR380959|pid:none) Candida glabrata strain CBS138 c... 91 8e-17
AP005311_3(AP005311|pid:none) Oryza sativa Japonica Group genomi... 90 1e-16
CU638743_551(CU638743|pid:none) Podospora anserina genomic DNA c... 89 2e-16
DQ487557_1(DQ487557|pid:none) Arabidopsis thaliana clone 0000003... 87 7e-16
AM502248_413(AM502248|pid:none) Leishmania infantum chromosome 30. 87 7e-16
AY590766_1(AY590766|pid:none) Emericella nidulans PHO80-like cyc... 82 4e-14
AM502223_72(AM502223|pid:none) Leishmania infantum chromosome 5. 82 4e-14
CR382130_861(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 81 5e-14
(Q0J9W0) RecName: Full=Cyclin-P1-1; Short=CycP1;1; &AL... 81 5e-14
AJ496543_1(AJ496543|pid:none) Trypanosoma brucei CYC7 gene for c... 81 6e-14
AC008146_14(AC008146|pid:none) Trypanosoma brucei chromosome 6 c... 81 6e-14
CT005244_72(CT005244|pid:none) Leishmania major strain Friedlin,... 81 6e-14
AM494942_89(AM494942|pid:none) Leishmania braziliensis chromosom... 80 1e-13
EU951809_1(EU951809|pid:none) Zea mays clone 1060979 nuc-1 negat... 79 2e-13
(Q7FAT5) RecName: Full=Cyclin-P2-1; Short=CycP2;1; &AK... 79 3e-13
EU962837_1(EU962837|pid:none) Zea mays clone 245908 unknown mRNA. 79 3e-13
DQ160060_1(DQ160060|pid:none) Taraxacum officinale TO51-3 (To51-... 78 5e-13
AF237588_1(AF237588|pid:none) Trypanosoma cruzi cyclin 4 (cyc4) ... 77 7e-13
CP000497_278(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 76 2e-12
BX284753_14(BX284753|pid:none) Neurospora crassa DNA linkage gro... 75 4e-12
FN392322_936(FN392322|pid:none) Pichia pastoris GS115 chromosome... 74 8e-12
CU633871_22(CU633871|pid:none) Podospora anserina genomic DNA ch... 73 1e-11
CR380951_103(CR380951|pid:none) Candida glabrata strain CBS138 c... 72 2e-11
CT005263_188(CT005263|pid:none) Leishmania major strain Friedlin... 72 2e-11
AP007171_790(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 72 2e-11
AM502242_126(AM502242|pid:none) Leishmania infantum chromosome 24. 72 2e-11
CU928167_461(CU928167|pid:none) Kluyveromyces thermotolerans str... 72 3e-11
CU928175_311(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 72 4e-11
EF494634_1(EF494634|pid:none) Ustilago maydis alternative cyclin... 71 5e-11
X07464_1(X07464|pid:none) Yeast PHO80 gene for trans-acting fact... 70 9e-11
AE016828_1284(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 70 9e-11
AP007167_571(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 70 1e-10
CP001019_481(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com... 70 1e-10
AY157029_1(AY157029|pid:none) Trypanosoma brucei putative G1 cyc... 69 3e-10
AJ505557_1(AJ505557|pid:none) Trypanosoma brucei partial CYC4 ge... 69 3e-10
AE016816_206(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 69 3e-10
AM920436_908(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 68 4e-10
AM055942_25(AM055942|pid:none) Toxoplasma gondii RH, genomic DNA... 68 4e-10
AC116100_4(AC116100|pid:none) Dictyostelium discoideum chromosom... 68 4e-10
CR382131_812(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 67 7e-10
AF429969_1(AF429969|pid:none) Homo sapiens cyclin-box carrying p... 66 2e-09
BC149897_1(BC149897|pid:none) Bos taurus cyclin Y, mRNA (cDNA cl... 66 2e-09
(Q96P45) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote... 66 2e-09
AB072785_1(AB072785|pid:none) Macaca fascicularis testis cDNA cl... 64 8e-09
AK303283_1(AK303283|pid:none) Homo sapiens cDNA FLJ54216 complet... 64 8e-09
BC035524_1(BC035524|pid:none) Mus musculus RIKEN cDNA 5730405I09... 64 8e-09
(Q8BGU5) RecName: Full=Cyclin-Y; AltName: Full=Cyclin fold prote... 64 8e-09
AF465728_1(AF465728|pid:none) Homo sapiens cyclin fold protein 1... 64 8e-09
AK057280_1(AK057280|pid:none) Homo sapiens cDNA FLJ32718 fis, cl... 64 1e-08
BT088136_1(BT088136|pid:none) Zea mays full-length cDNA clone ZM... 64 1e-08
BT059267_1(BT059267|pid:none) Salmo salar clone ssal-rgf-537-296... 64 1e-08
AF413522_1(AF413522|pid:none) Homo sapiens cyclin-box carrying p... 63 2e-08
BC161467_1(BC161467|pid:none) Xenopus tropicalis hypothetical pr... 62 3e-08
AM494961_195(AM494961|pid:none) Leishmania braziliensis chromoso... 62 3e-08
AC096772_1(AC096772|pid:none) Homo sapiens BAC clone RP11-801F7 ... 62 3e-08
BC067253_1(BC067253|pid:none) Homo sapiens hypothetical protein ... 62 3e-08
(Q08CI4) RecName: Full=Cyclin-Y-like protein 1; &BC124226_1(BC1... 62 4e-08
(Q6NRF4) RecName: Full=Cyclin-Y-like protein 1-B; &BC070798_1(B... 62 4e-08
CT005263_187(CT005263|pid:none) Leishmania major strain Friedlin... 62 4e-08
(Q28EL0) RecName: Full=Cyclin-Y-like protein 1; &CR848188_1(CR8... 62 4e-08
AK017493_1(AK017493|pid:none) Mus musculus 8 days embryo whole b... 61 5e-08
BT080395_1(BT080395|pid:none) Caligus clemensi clone ccle-evs-50... 58 5e-07
FN357307_58(FN357307|pid:none) Schistosoma mansoni genome sequen... 58 6e-07
(P34624) RecName: Full=Uncharacterized cyclin-like protein ZK353... 56 2e-06
S44654(S44654)ZK353.1 protein - Caenorhabditis elegans 56 2e-06
CR382139_77(CR382139|pid:none) Debaryomyces hansenii strain CBS7... 55 3e-06
EF494636_1(EF494636|pid:none) Ustilago maydis alternative cyclin... 55 3e-06
AC159405_15(AC159405|pid:none) Trypanosoma brucei chromosome 8 c... 55 3e-06
(Q5U5D0) Cyclin-Y-like protein 1-A. &BC084754_1(BC084754|pid:no... 55 3e-06
AM270166_36(AM270166|pid:none) Aspergillus niger contig An08c011... 55 4e-06
AP007154_322(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 54 7e-06
AM920427_1528(AM920427|pid:none) Penicillium chrysogenum Wiscons... 53 2e-05
BT055594_1(BT055594|pid:none) Zea mays full-length cDNA clone ZM... 52 2e-05
AP008210_1975(AP008210|pid:none) Oryza sativa (japonica cultivar... 52 3e-05
EU975382_1(EU975382|pid:none) Zea mays clone 489225 unknown mRNA. 52 3e-05
CR382139_609(CR382139|pid:none) Debaryomyces hansenii strain CBS... 52 4e-05
CP000733_1288(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 51 6e-05
(Q4R871) Cyclin-Y-like protein 2. &AB168587_1(AB168587|pid:none) 51 7e-05
AL391099_1(AL391099|pid:none) Human DNA sequence from clone RP11... 50 9e-05
(Q5T2Q4) RecName: Full=Cyclin-Y-like protein 2; 50 9e-05
BC044514_1(BC044514|pid:none) Danio rerio c2orf24 homolog (H. sa... 47 8e-04
AJ496593_1(AJ496593|pid:none) Trypanosoma brucei CYC5 gene for c... 47 0.001
AY157030_1(AY157030|pid:none) Trypanosoma brucei putative G1 cyc... 47 0.001
AE017351_140(AE017351|pid:none) Cryptococcus neoformans var. neo... 47 0.001
BX004814_2(BX004814|pid:none) Zebrafish DNA sequence from clone ... 47 0.001
CR380954_389(CR380954|pid:none) Candida glabrata strain CBS138 c... 47 0.001
AY340664_1(AY340664|pid:none) Cryptococcus neoformans var. neofo... 47 0.001
CU928181_285(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 46 0.002
EF494633_1(EF494633|pid:none) Ustilago maydis alternative cyclin... 46 0.002
AB174189_1(AB174189|pid:none) Macaca fascicularis brain cDNA clo... 46 0.002
(Q6P7B2) RecName: Full=Uncharacterized protein C2orf24 homolog; ... 46 0.002
AB372545_1(AB372545|pid:none) Vitis hybrid cultivar Tamnara mRNA... 46 0.002
AK145962_1(AK145962|pid:none) Mus musculus 14 days pregnant adul... 45 0.003
AM270366_7(AM270366|pid:none) Aspergillus niger contig An16c0140... 45 0.003
AM494970_82(AM494970|pid:none) Leishmania braziliensis chromosom... 45 0.003
(Q9FVX0) RecName: Full=Cyclin-A1-2; AltName: Full=G2/mitotic-spe... 45 0.004
CR940348_224(CR940348|pid:none) Theileria annulata strain Ankara... 45 0.004
A96803(A96803) probable mitotic cyclin a2-type [imported] - Arab... 45 0.004
AF151815_1(AF151815|pid:none) Homo sapiens CGI-57 protein mRNA, ... 45 0.005
AY007160_1(AY007160|pid:none) Homo sapiens clone CDABP0125 mRNA ... 45 0.005
CR382122_81(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 45 0.005
(Q9BV87) RecName: Full=Uncharacterized protein C2orf24; &AK3149... 45 0.005
AK159252_1(AK159252|pid:none) Mus musculus osteoclast-like cell ... 45 0.005
EU692911_1(EU692911|pid:none) Caenorhabditis brenneri clone 2A12... 44 0.009
(Q5ZJH7) RecName: Full=Uncharacterized protein C2orf24 homolog; ... 44 0.011
AE016819_121(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 43 0.015
AY693227_1(AY693227|pid:none) Saccharomyces cerevisiae clone FLH... 43 0.015
AM502251_81(AM502251|pid:none) Leishmania infantum chromosome 33. 43 0.015
(Q08966) RecName: Full=PHO85 cyclin-8; &S65238(S65238) &Z73575_... 43 0.015
(Q5E9J2) RecName: Full=Uncharacterized protein C2orf24 homolog; ... 43 0.020
CU633872_97(CU633872|pid:none) Podospora anserina genomic DNA ch... 43 0.020
BC113239_1(BC113239|pid:none) Bos taurus chromosome 2 open readi... 43 0.020
AP007155_464(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.020
FN392322_182(FN392322|pid:none) Pichia pastoris GS115 chromosome... 42 0.026
FJ705251_1(FJ705251|pid:none) Scylla paramamosain cyclin B mRNA,... 42 0.026
AM269957_2(AM269957|pid:none) Aspergillus niger contig An01c0100... 42 0.026
EF494635_1(EF494635|pid:none) Ustilago maydis alternative cyclin... 42 0.026
EF494638_1(EF494638|pid:none) Ustilago maydis alternative cyclin... 42 0.044
FM992690_258(FM992690|pid:none) Candida dubliniensis CD36 chromo... 42 0.044
(P36630) RecName: Full=G2/mitotic-specific cyclin cig2; &AL5125... 41 0.057
BC013714_1(BC013714|pid:none) Mus musculus RIKEN cDNA 1810031K17... 41 0.057
A48100(A48100) B-type cyclin, Cig2 - fission yeast (Schizosaccha... 41 0.057
BX649605_70(BX649605|pid:none) Aspergillus fumigatus BAC pilot p... 41 0.057
HB439555_1(HB439555|pid:none) Sequence 2373 from Patent WO200907... 41 0.074
BC092314_1(BC092314|pid:none) Xenopus laevis hypothetical protei... 41 0.074
BC061409_1(BC061409|pid:none) Xenopus tropicalis hypothetical pr... 40 0.097
AE017341_18(AE017341|pid:none) Cryptococcus neoformans var. neof... 40 0.13
AE017341_19(AE017341|pid:none) Cryptococcus neoformans var. neof... 40 0.13
AM270349_7(AM270349|pid:none) Aspergillus niger contig An15c0220... 40 0.13
CU928180_610(CU928180|pid:none) Kluyveromyces thermotolerans str... 40 0.17
AP007150_417(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 39 0.22
CR380956_265(CR380956|pid:none) Candida glabrata strain CBS138 c... 39 0.22
CP001230_993(CP001230|pid:none) Persephonella marina EX-H1, comp... 39 0.28
AL021176_2(AL021176|pid:none) Caenorhabditis elegans YAC Y43E12A... 39 0.28
AC006666_1(AC006666|pid:none) Caenorhabditis elegans fosmid H31G... 39 0.28
CR382137_554(CR382137|pid:none) Debaryomyces hansenii strain CBS... 39 0.37
EU939758_1(EU939758|pid:none) Saccoglossus kowalevskii cyclin D ... 38 0.48
CU633899_320(CU633899|pid:none) Podospora anserina genomic DNA c... 38 0.48
FN392320_104(FN392320|pid:none) Pichia pastoris GS115 chromosome... 37 0.82
FM992692_305(FM992692|pid:none) Candida dubliniensis CD36 chromo... 37 0.82
AE017347_205(AE017347|pid:none) Cryptococcus neoformans var. neo... 37 0.82
AL121720_2(AL121720|pid:none) S.pombe chromosome III cosmid c4E9. 37 0.82
(P24871) RecName: Full=G2/mitotic-specific cyclin-4; &B60048(B6... 37 1.1
FN357383_1(FN357383|pid:none) Schistosoma mansoni genome sequenc... 37 1.1
AM920437_2442(AM920437|pid:none) Penicillium chrysogenum Wiscons... 36 1.8
(Q12477) RecName: Full=PHO85 cyclin-9; &AY557655_1(AY557655|pid... 36 1.8
HB439537_1(HB439537|pid:none) Sequence 2355 from Patent WO200907... 36 1.8
CR382125_576(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 36 1.8
AE017341_412(AE017341|pid:none) Cryptococcus neoformans var. neo... 36 2.4
T32491(T32491)hypothetical protein F09G2.2 - Caenorhabditis eleg... 36 2.4
M68881_1(M68881|pid:none) S.pombe cigl+ gene, complete cds. 35 3.1
CP001576_27(CP001576|pid:none) Micromonas sp. RCC299 chromosome ... 35 3.1
CU928165_58(CU928165|pid:none) Kluyveromyces thermotolerans stra... 35 3.1
CP000931_2614(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 35 3.1
AF250284_260(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 35 3.1
CU928180_66(CU928180|pid:none) Kluyveromyces thermotolerans stra... 35 4.1
(P37883) RecName: Full=G2/mitotic-specific cyclin-B2; &D17294_1... 35 5.3
HB446786_1(HB446786|pid:none) Sequence 209 from Patent EP2078753... 35 5.3
AM920437_530(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 35 5.3
AK076122_1(AK076122|pid:none) Mus musculus 10, 11 days embryo wh... 35 5.3
AM920436_191(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 35 5.3
BX950229_330(BX950229|pid:none) Methanococcus maripaludis strain... 34 7.0
S67670(S67670;C39977) hypothetical protein YDL127w - yeast (Sacc... 34 7.0
(P25693) RecName: Full=PHO85 cyclin-2; AltName: Full=G1/S-specif... 34 7.0
AM910995_236(AM910995|pid:none) Plasmodium knowlesi strain H chr... 34 7.0
DQ296192_1(DQ296192|pid:none) Brassica rapa clone 136 cyclin-dep... 34 7.0
D82349_1(D82349|pid:none) Adiantum capillus-veneris mRNA for cyc... 34 9.1
AB183429_1(AB183429|pid:none) Anguilla japonica mRNA for cyclin ... 34 9.1

>AM910992_144(AM910992|pid:none) Plasmodium knowlesi strain H
chromosome 10, complete genome.
Length = 250

Score = 118 bits (296), Expect = 3e-25
Identities = 61/167 (36%), Positives = 108/167 (64%), Gaps = 6/167 (3%)
Frame = +3

Query: 228 LTELPIIGDNIL-LKAG----TQYHSNLFVSPTSEVPKISITEYLTRLVKFSPCSKECFI 392
++ LPI+ +N++ + G T +H+ S+VP ISI Y+ R+ K++ CS ECF+
Sbjct: 18 ISYLPIVLENMIKINRGNGKITSFHA-------SKVPDISIKNYVERIGKYTGCSNECFV 70

Query: 393 MIIVYIDRIIS-KTNFIINSLNIHRLLITAIMVASKYIDDIFYNNEYYSHIGGVTRDELN 569
++++Y+DRI+ T+ ++ L IHRLLITAIM+A+K+ DD++Y+N +Y+ +GGV+ +E+N
Sbjct: 71 LLMIYLDRIVKINTDITLSLLCIHRLLITAIMIAAKFFDDLYYSNAFYAKVGGVSTEEIN 130

Query: 570 RLEISFLNLLQFDLSCPLPDYLDYFSKLDSFVSKLRRQNKKDSVIKI 710
+LE +FL+L+ ++L +Y Y + V + R+ D + I
Sbjct: 131 KLEGTFLHLIDYNLFVSSEEYNLYRHSISLAVERYLRRTHVDGKVGI 177

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,118,037,157
Number of extensions: 18070698
Number of successful extensions: 46581
Number of sequences better than 10.0: 200
Number of HSP's gapped: 46494
Number of HSP's successfully gapped: 204
Length of query: 332
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 203
Effective length of database: 639,555,889
Effective search space: 129829845467
Effective search space used: 129829845467
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.66 gvh: 0.33 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U03858-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0