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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U03827-1
Contig ID Contig-U03827-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U03827-1 (Contig-U03827-1Q) /CSM_Contig/Contig-U03827-1Q.Seq.d
CAATAATAAAAAAAAGATGAAATAATGGATAAAACTATTATAAATAAAAG
CAATAAAATGAAAACTTCTTCCACTTCCTCTACTTCTTCTACTTCCACTT
CTTCTACTTCTTCCCTTTTAAATCAACAACCAACACAAGATACACATAAA
TTAAATAATAAAAATTTTAAAACGAATCAAAGGAAAAAAATTGAAGAAGA
GTTGATCGAGCATAATAAACTAAATAACATGTTAAAAGATATATCCAAAA
AGTATGAACATAAAATTCAAATTAAACAAGAATCAATTGTTACCATTGAA
AAGGTTGTCCAATCATTTGTAAAGGTGATTTTAAAGAAAACAAACATTGA
TAATAACACTTTGCAAATCACTG
Gap no gap
Contig length 373
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 374975
End point 375348
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03827
List of clone(s) 

est1=SLA892F,1,374
Translated Amino Acid sequence 
q**KKDEIMDKTIINKSNKMKTSSTSSTSSTSTSSTSSLLNQQPTQDTHKLNNKNFKTNQ
RKKIEEELIEHNKLNNMLKDISKKYEHKIQIKQESIVTIEKVVQSFVKVILKKTNIDNNT
LQIT
Translated Amino Acid sequence (All Frames) 
Frame A:
q**KKDEIMDKTIINKSNKMKTSSTSSTSSTSTSSTSSLLNQQPTQDTHKLNNKNFKTNQ
RKKIEEELIEHNKLNNMLKDISKKYEHKIQIKQESIVTIEKVVQSFVKVILKKTNIDNNT
LQIT


Frame B:
nnkkkmk*wikll*ikaik*kllplplllllplllllpf*innqhkihin*iikilkrik
gkklkks*ssiin*itc*kiypksmnikfklnknqllplkrlsnhl*r*f*rkqtliitl
cksl


Frame C:
iikkr*nng*nyyk*kq*nenffhflyffyfhffyffpfksttntryt*ik**kf*nesk
ekn*rrvdra**tk*hvkryiqkv*t*nsn*trincyh*kgcpiickgdfkenkh***hf
anh
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03827-1 (Contig-U03827-1Q)
/CSM_Contig/Contig-U03827-1Q.Seq.d
         (373 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03827-1 (Contig-U03827-1Q) /CSM_Contig/Conti...   363  e-101
Contig-U01838-1 (Contig-U01838-1Q) /CSM_Contig/Conti...    36  0.026
Contig-U12364-1 (Contig-U12364-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U06667-1 (Contig-U06667-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U06575-1 (Contig-U06575-1Q) /CSM_Contig/Conti...    34  0.10
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U11847-1 (Contig-U11847-1Q) /CSM_Contig/Conti...    32  0.40
Contig-U11070-1 (Contig-U11070-1Q) /CSM_Contig/Conti...    32  0.40

>Contig-U03827-1 (Contig-U03827-1Q) /CSM_Contig/Contig-U03827-1Q.Seq.d
          Length = 373

 Score =  363 bits (183), Expect = e-101
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                       
Query: 191 ttgaagaagagttgatcgagcataataaactaaataacatgttaaaagatatatccaaaa 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttgaagaagagttgatcgagcataataaactaaataacatgttaaaagatatatccaaaa 250

                                                                       
Query: 251 agtatgaacataaaattcaaattaaacaagaatcaattgttaccattgaaaaggttgtcc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agtatgaacataaaattcaaattaaacaagaatcaattgttaccattgaaaaggttgtcc 310

                                                                       
Query: 311 aatcatttgtaaaggtgattttaaagaaaacaaacattgataataacactttgcaaatca 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aatcatttgtaaaggtgattttaaagaaaacaaacattgataataacactttgcaaatca 370

              
Query: 371 ctg 373
           |||
Sbjct: 371 ctg 373


 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 118 ttaaatcaacaaccaacacaagataca 144
           |||||||||||||||||||||||||||
Sbjct: 118 ttaaatcaacaaccaacacaagataca 144


>Contig-U01838-1 (Contig-U01838-1Q) /CSM_Contig/Contig-U01838-1Q.Seq.d
          Length = 588

 Score = 36.2 bits (18), Expect = 0.026
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 306 tgtccaatcatttgtaaa 323
           ||||||||||||||||||
Sbjct: 220 tgtccaatcatttgtaaa 203


>Contig-U12364-1 (Contig-U12364-1Q) /CSM_Contig/Contig-U12364-1Q.Seq.d
          Length = 1245

 Score = 34.2 bits (17), Expect = 0.10
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 238 gatatatccaaaaagta 254
           |||||||||||||||||
Sbjct: 495 gatatatccaaaaagta 511


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3898
Number of Sequences: 6905
Number of extensions: 3898
Number of successful extensions: 440
Number of sequences better than 10.0: 129
length of query: 373
length of database: 5,674,871
effective HSP length: 16
effective length of query: 357
effective length of database: 5,564,391
effective search space: 1986487587
effective search space used: 1986487587
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6. 7
Homology vs DNA 
Query= Contig-U03827-1 (Contig-U03827-1Q) /CSM_Contig/Contig-U03827-1Q.Seq.d
         (373 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060295) Dictyostelium discoideum slug cDNA, clone SLA892.      361   e-105  2
(BX813317) Mouse DNA sequence from clone RP24-297H17 on chro...    50   0.060  1
(AC211593) Pongo abelii chromosome UNKNOWN clone CH276-471F1...    50   0.060  1
(AL772164) Mouse DNA sequence from clone RP23-400H4 on chrom...    48   0.24   1
(CP001205) Borrelia burgdorferi ZS7, complete genome.              48   0.24   1
(AE000783) Borrelia burgdorferi B31, complete genome.              48   0.24   1
(AC125971) Rattus norvegicus clone CH230-143A11, *** SEQUENC...    36   0.59   3
(AC176842) Strongylocentrotus purpuratus clone R3-3120E13, W...    46   0.70   2
(DR544740) WS01045.B21_D24 SS-R-N-A-11 Picea sitchensis cDNA...    46   0.93   1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    40   1.0    6
(EJ827572) 1093017567476 Global-Ocean-Sampling_GS-30-02-01-1...    38   1.2    2
(AE017308) Mycoplasma mobile 163K complete genome.                 32   1.7    2
(AC146681) Medicago truncatula clone mth2-77o10, complete se...    32   1.9    2
(DB822971) Nilaparvata lugens mRNA, EST clone:NLAC0830, 5' e...    34   2.5    2
(CU074421) Zebrafish DNA sequence from clone DKEY-172O7 in l...    38   3.4    2
(AC119805) Mus musculus chromosome 16, clone RP23-144H22, co...    44   3.7    1
(AM432849) Vitis vinifera contig VV78X200552.10, whole genom...    44   3.7    1
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    44   3.7    1
(AC156203) Bos taurus clone CH240-39G21, WORKING DRAFT SEQUE...    44   3.7    1
(AC079637) Mus musculus clone RP23-185M20, WORKING DRAFT SEQ...    44   3.7    1
(ED938854) OA_CBa0118J12.r OA_CBa Oryza australiensis genomi...    44   3.7    1
(ED780114) GM_WBb0158N16.f GM_WBb Glycine max genomic clone ...    44   3.7    1
(CU079394) Equus caballus GSS, BAC clone CH241-173K23, SP6 e...    44   3.7    1
(CR916593) Sus scrofa BES.                                         44   3.7    1
(AG328726) Mus musculus molossinus DNA, clone:MSMg01-117K10....    44   3.7    1
(GO197490) CAGB16699.fwd CAGB Alvinella pompejana Normalized...    44   3.7    1
(GO193405) CAGB14047.rev CAGB Alvinella pompejana Normalized...    44   3.7    1
(GO146617) CAGA32215.fwd CAGA Alvinella pompejana Normalized...    44   3.7    1
(GO146616) CAGA32215.rev CAGA Alvinella pompejana Normalized...    44   3.7    1
(GO138211) CAGA27904.rev CAGA Alvinella pompejana Normalized...    44   3.7    1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         44   3.7    1
(AK288314) Oryza sativa Japonica Group cDNA, clone: J090021E...    34   4.3    2
(AC014533) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   9.2    2

>(AU060295) Dictyostelium discoideum slug cDNA, clone SLA892.
          Length = 374

 Score =  361 bits (182), Expect(2) = e-105
 Identities = 182/182 (100%)
 Strand = Plus / Plus


Query: 192 tgaagaagagttgatcgagcataataaactaaataacatgttaaaagatatatccaaaaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgaagaagagttgatcgagcataataaactaaataacatgttaaaagatatatccaaaaa 251


Query: 252 gtatgaacataaaattcaaattaaacaagaatcaattgttaccattgaaaaggttgtcca 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtatgaacataaaattcaaattaaacaagaatcaattgttaccattgaaaaggttgtcca 311


Query: 312 atcatttgtaaaggtgattttaaagaaaacaaacattgataataacactttgcaaatcac 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atcatttgtaaaggtgattttaaagaaaacaaacattgataataacactttgcaaatcac 371


Query: 372 tg 373
           ||
Sbjct: 372 tg 373

 Score = 58.0 bits (29), Expect(2) = e-105
 Identities = 29/29 (100%)
 Strand = Plus / Plus


Query: 118 ttaaatcaacaaccaacacaagatacaca 146
           |||||||||||||||||||||||||||||
Sbjct: 118 ttaaatcaacaaccaacacaagatacaca 146

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 313,271,870
Number of extensions: 20133367
Number of successful extensions: 1710214
Number of sequences better than 10.0: 34
Length of query: 373
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 350
Effective length of database: 99,442,330,388
Effective search space: 34804815635800
Effective search space used: 34804815635800
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03827-1 (Contig-U03827-1Q) /CSM_Contig/Contig-U03827-1Q.Seq.d
         (373 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09839_1(U09839|pid:none) Plasmodium falciparum 3D7 sequestrin m...    39   0.044
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   0.22
AE014187_22(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.37
CP001581_638(CP001581|pid:none) Clostridium botulinum A2 str. Ky...    36   0.37
CR932234_1(CR932234|pid:none) Structural maintenance of chromoso...    36   0.48
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF...    36   0.48
AE014185_35(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.48
AM412317_607(AM412317|pid:none) Clostridium botulinum A str. ATC...    36   0.48
CP000728_603(CP000728|pid:none) Clostridium botulinum F str. Lan...    36   0.48
(P08799) RecName: Full=Myosin-2 heavy chain; AltName: Full=Myosi...    35   0.63
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.63
CP000727_580(CP000727|pid:none) Clostridium botulinum A str. Hal...    35   0.63
CR380958_523(CR380958|pid:none) Candida glabrata strain CBS138 c...    35   0.63
A26655(A26655;A24728;S00250) myosin heavy chain [similarity] - s...    35   0.63
CP000721_1668(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    35   0.63
AP006852_67(AP006852|pid:none) Candida albicans genomic DNA, chr...    35   0.82
AL844504_183(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.82
AL844504_47(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.1
CP001279_1394(CP001279|pid:none) Nautilia profundicola AmH, comp...    35   1.1
AL929351_47(AL929351|pid:none) Plasmodium falciparum strain 3D7,...    35   1.1
FN357526_12(FN357526|pid:none) Schistosoma mansoni genome sequen...    35   1.1
CP001080_1428(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    35   1.1
CP000879_361(CP000879|pid:none) Petrotoga mobilis SJ95, complete...    34   1.4
EF568108_62(EF568108|pid:none) Glossina pallidipes salivary glan...    34   1.8
(A2BYY9) RecName: Full=Ribosome maturation factor rimM;  &CP0005...    34   1.8
(Q5HPA2) RecName: Full=Extracellular matrix-binding protein ebh;...    34   1.8
(Q8CP76) RecName: Full=Extracellular matrix-binding protein ebh;...    34   1.8
CP000102_209(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   1.8
AL844508_33(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    34   1.8
CP000029_988(CP000029|pid:none) Staphylococcus epidermidis RP62A...    34   1.8
AL929355_32(AL929355|pid:none) Plasmodium falciparum strain 3D7,...    34   1.8
AF419250_1(AF419250|pid:none) Mus musculus class I MHC receptor ...    34   1.8
AE015927_481(AE015927|pid:none) Clostridium tetani E88, complete...    34   1.8
AM422018_68(AM422018|pid:none) Candidatus Phytoplasma australien...    34   1.8
T33795(T33795)hypothetical protein Y73C8C.8 - Caenorhabditis ele...    34   1.8
AF288381_1(AF288381|pid:none) Mus musculus lectin-related NK cel...    34   1.8
AF444273_1(AF444273|pid:none) Mus musculus truncated class I MHC...    34   1.8
AF101318_6(AF101318|pid:none) Caenorhabditis elegans cosmid Y73C...    34   1.8
BC073482_1(BC073482|pid:none) Xenopus laevis hypothetical protei...    33   2.4
BC066673_1(BC066673|pid:none) Danio rerio zgc:65888, mRNA (cDNA ...    33   2.4
AJ421617_1(AJ421617|pid:none) Priapulus caudatus mRNA for cytopl...    33   2.4
AE017197_457(AE017197|pid:none) Rickettsia typhi str. Wilmington...    33   2.4
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    33   2.4
CP000263_214(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin...    33   2.4
(Q54SY5) RecName: Full=Putative uncharacterized protein DDB_G028...    33   2.4
FJ406771_1(FJ406771|pid:none) Plasmodium reichenowi isolate CDC-...    33   2.4
AE001437_1240(AE001437|pid:none) Clostridium acetobutylicum ATCC...    33   2.4
(A8MPV3) RecName: Full=Putative uncharacterized protein ENSP0000...    33   2.4
(P41184) RecName: Full=DNA-directed RNA polymerase subunit beta;...    33   2.4
AM910988_4(AM910988|pid:none) Plasmodium knowlesi strain H chrom...    33   3.1
FN392322_165(FN392322|pid:none) Pichia pastoris GS115 chromosome...    33   3.1
(Q54VC4) RecName: Full=Activating signal cointegrator 1 complex ...    33   3.1
AM411378_2(AM411378|pid:none) Oikopleura dioica lmn gene for lam...    33   3.1
(P47615) RecName: Full=Threonyl-tRNA synthetase;          EC=6.1...    33   3.1
CP001230_1815(CP001230|pid:none) Persephonella marina EX-H1, com...    33   3.1
AE001362_59(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    33   3.1
AE016795_14(AE016795|pid:none) Vibrio vulnificus CMCP6 chromosom...    33   4.1
(Q55EZ4) RecName: Full=Integrator complex subunit 3 homolog;           33   4.1
AE014188_252(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.1
CP000096_1317(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    33   4.1
AM910995_453(AM910995|pid:none) Plasmodium knowlesi strain H chr...    33   4.1
CP000061_409(CP000061|pid:none) Aster yellows witches'-broom phy...    33   4.1
(P44601) RecName: Full=Heme/hemopexin transporter protein huxB; ...    32   5.3
AE002133_9(AE002133|pid:none) Ureaplasma parvum serovar 3 str. A...    32   5.3
AM910991_203(AM910991|pid:none) Plasmodium knowlesi strain H chr...    32   5.3
(P45356) RecName: Full=Heme/hemopexin transporter protein huxB; ...    32   5.3
AF320125_1(AF320125|pid:none) Xenopus laevis ataxia telangiectas...    32   5.3
(Q9DE14) RecName: Full=Serine/threonine-protein kinase atr;     ...    32   5.3
(Q0I5B7) RecName: Full=DNA-directed RNA polymerase subunit beta;...    32   5.3
AY882989_1(AY882989|pid:none) Xenopus laevis protein kinase (ATR...    32   5.3
(A5UH20) RecName: Full=DNA-directed RNA polymerase subunit beta;...    32   5.3
(Q55G20) RecName: Full=Putative uncharacterized protein DDB_G026...    32   5.3
CP001453_14(CP001453|pid:none) Borrelia burgdorferi WI91-23 plas...    32   5.3
AM910990_94(AM910990|pid:none) Plasmodium knowlesi strain H chro...    32   5.3
AM180355_2163(AM180355|pid:none) Clostridium difficile 630 compl...    32   5.3
AF223644_1(AF223644|pid:none) Xenopus laevis Atr protein (Atr) m...    32   5.3
AF536754_3(AF536754|pid:none) Haemophilus influenzae strain HI13...    32   5.3
CP000053_1141(CP000053|pid:none) Rickettsia felis URRWXCal2, com...    32   5.3
CR548612_182(CR548612|pid:none) Paramecium tetraurelia macronucl...    32   5.3
AF536755_3(AF536755|pid:none) Haemophilus influenzae strain HI68...    32   5.3
CP000672_662(CP000672|pid:none) Haemophilus influenzae PittGG, c...    32   5.3
AE001362_90(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    32   5.3
CP001270_29(CP001270|pid:none) Borrelia burgdorferi 156a plasmid...    32   5.3
(P43738) RecName: Full=DNA-directed RNA polymerase subunit beta;...    32   6.9
(A5U9X8) RecName: Full=DNA-directed RNA polymerase subunit beta;...    32   6.9
CP001279_257(CP001279|pid:none) Nautilia profundicola AmH, compl...    32   6.9
FM992695_853(FM992695|pid:none) Candida dubliniensis CD36 chromo...    32   6.9
CP000241_1130(CP000241|pid:none) Helicobacter pylori HPAG1, comp...    32   6.9
AF250284_244(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    32   6.9
(P41832) RecName: Full=Protein BNI1; AltName: Full=Synthetic let...    32   6.9
CP000721_2246(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   6.9
CT573073_79(CT573073|pid:none) Kuenenia stuttgartiensis genome f...    32   6.9
L31766_1(L31766|pid:none) Saccharomyces cerevisiae synthetic let...    32   6.9
AL008970_27(AL008970|pid:none) Plasmodium falciparum MAL3P4.  &A...    32   6.9
CP000939_2712(CP000939|pid:none) Clostridium botulinum B1 str. O...    32   9.1
A45813(A45813) T-cell surface glycoprotein YE1/48 - mouse  &M258...    32   9.1
CP000083_4489(CP000083|pid:none) Colwellia psychrerythraea 34H, ...    32   9.1
AL844509_187(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.1
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    32   9.1
AL844503_64(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    32   9.1
CP000361_967(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    32   9.1
AC116979_42(AC116979|pid:none) Dictyostelium discoideum chromoso...    32   9.1
AL929220_10(AL929220|pid:none) Zebrafish DNA sequence from clone...    32   9.1
BX571790_2(BX571790|pid:none) Zebrafish DNA sequence from clone ...    32   9.1
CP000501_380(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    32   9.1
AF146571_1(AF146571|pid:none) Mus musculus lectin-related NK cel...    32   9.1
CP000123_227(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    32   9.1
AM910995_449(AM910995|pid:none) Plasmodium knowlesi strain H chr...    32   9.1
CR382139_646(CR382139|pid:none) Debaryomyces hansenii strain CBS...    32   9.1
AF374001_1(AF374001|pid:none) Mus musculus strain NZW/LacJ natur...    32   9.1

>U09839_1(U09839|pid:none) Plasmodium falciparum 3D7 sequestrin
           mRNA, partial cds.
          Length = 652

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
 Frame = +1

Query: 10  KKDEIMDKTIINKSNKMKXXXXXXXXXXXXXXXXXLLNQQPTQDTHKLNNKNFKTNQRKK 189
           +KD I+ + I N+SN+                     N    +D + LNNK+   N  +
Sbjct: 383 EKDNIIHRNIKNESNQKNKKENVNVFIIHDNNDSNNNNNNNNRDVNNLNNKHTNNNYNEN 442

Query: 190 IEEELIEHNKLNNMLKDISKKYEHKIQIKQESIVTIEKV-VQSFVKVILKKTNIDNNTLQ 366
           +E EL+    + N+ KD   K E  I    + I   + V V + V  +  K   DN  +Q
Sbjct: 443 VEVELV----VRNLDKDKGAKIEDIIDYFNKEIKKDKNVNVSNIVNFLNSKVGKDNTPIQ 498

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 372,003,939
Number of extensions: 6305032
Number of successful extensions: 29705
Number of sequences better than 10.0: 110
Number of HSP's gapped: 29580
Number of HSP's successfully gapped: 111
Length of query: 124
Length of database: 1,061,185,681
Length adjustment: 90
Effective length of query: 34
Effective length of database: 767,025,361
Effective search space: 26078862274
Effective search space used: 26078862274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.56  gvh: 0.50  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03827-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0