Contig-U03792-1 |
Contig ID |
Contig-U03792-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
833 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1341596 |
End point |
1341957 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U03792 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 9 |
Homology vs CSM-cDNA |
|
dna update |
2009. 6. 7 |
Homology vs DNA |
Query= Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Contig-U03792-1Q.Seq.d (833 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C25576) Dictyostelium discoideum slug cDNA, clone SLA493. 799 0.0 1 (AU060163) Dictyostelium discoideum slug cDNA, clone SLA493. 646 0.0 2 (DX125484) OG_ABa0153O22.r OG_ABa Oryza granulata genomic cl... 52 0.035 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.051 9 (BU021657) QHE3a12.yg.ab1 QH_EFGHJ sunflower RHA280 Helianth... 40 0.11 2 (AC114106) Rattus norvegicus clone CH230-21N11, *** SEQUENCI... 50 0.14 1 (AC103074) Rattus norvegicus clone CH230-174A13, *** SEQUENC... 50 0.14 1 (AZ691828) ENTHW39TR Entamoeba histolytica Sheared DNA Entam... 38 0.40 2 (AM439697) Vitis vinifera contig VV79X002320.2, whole genome... 48 0.54 1 (AX346056) Sequence 1127 from Patent WO0200928. 48 0.54 1 (AC173770) Bos taurus clone CH240-171K9, WORKING DRAFT SEQUE... 48 0.54 1 (AC164737) Bos taurus clone CH240-141J24, *** SEQUENCING IN ... 48 0.54 1 (ER822476) POTLT45TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.54 1 (EJ001634) 1091120858792 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.54 1 (BZ941114) CH240_91I2.TJ CHORI-240 Bos taurus genomic clone ... 48 0.54 1 (FD566190) RS1EX20JQ RS1(AR) Raphanus sativus var. oleiformi... 48 0.54 1 (DD010735) Diagnosis of known genetic Parameters within the ... 38 1.5 9 (AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 40 1.7 4 (AC166826) Mus musculus BAC clone RP23-370K22 from chromosom... 46 2.2 1 (AC159248) Mus musculus BAC clone RP24-254P11 from chromosom... 46 2.2 1 (AC004155) Mus musculus DNA from BAC 10818 containing the Er... 46 2.2 1 (FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 46 2.2 1 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 46 2.2 1 (AC223736) Bos taurus clone CH240-459B17, WORKING DRAFT SEQU... 46 2.2 1 (EK034567) 1092959419920 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.2 1 (EI488142) PV_GBa0103E14.r PV_GBa Phaseolus vulgaris genomic... 46 2.2 1 (EF963417) Mus musculus C57BL/6N IST12988G8HMF1 gene trap em... 46 2.2 1 (EF804289) Mus musculus C57BL/6N IST11210A3BBF1 gene trap em... 46 2.2 1 (EF766881) Mus musculus C57BL/6N IST10790C6BBF1 gene trap em... 46 2.2 1 (EF760361) Mus musculus C57BL/6N IST10598A4BBF1 gene trap em... 46 2.2 1 (EF755557) Mus musculus C57BL/6N IST10598A4HMF1 gene trap em... 46 2.2 1 (CE149653) tigr-gss-dog-17000371320060 Dog Library Canis lup... 46 2.2 1 (AM569135) Paracentrotus lividus EST, clone MPMGp1173L24114Q... 46 2.2 1 (BJ392310) Dictyostelium discoideum cDNA clone:dds27m04, 5' ... 46 2.2 1 (AA752917) 97AS0651 Rice Immature Seed Lambda ZAPII cDNA Lib... 46 2.2 1 (CR954253) Lactobacillus delbrueckii subsp. bulgaricus ATCC ... 46 2.2 1 (CP000412) Lactobacillus delbrueckii subsp. bulgaricus ATCC ... 46 2.2 1 (AE017308) Mycoplasma mobile 163K complete genome. 46 2.2 1 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 38 2.7 4 (AC189948) Rhesus Macaque BAC CH250-103G2 () complete seque... 42 3.8 2 (AC148703) Macaca mulatta Major Histocompatibility Complex B... 42 3.9 2 (CR376761) Zebrafish DNA sequence from clone DKEY-6F24 in li... 34 4.0 2 (CT737255) Zebrafish DNA sequence from clone DKEY-259G19 in ... 34 4.2 2 (AC148691) Macaca mulatta Major Histocompatibility Complex B... 42 4.4 2 (AC116240) Rattus norvegicus clone CH230-158N11, *** SEQUENC... 44 4.4 2 (AC231156) Bos taurus clone CH240-97C15, WORKING DRAFT SEQUE... 44 4.5 2 (AC119736) Homo sapiens 3 BAC RP11-196G10 (Roswell Park Canc... 40 4.7 4 (BJ352995) Dictyostelium discoideum cDNA clone:dda48j18, 3' ... 34 5.4 2 (EJ732912) 1092960194709 Global-Ocean-Sampling_GS-30-02-01-1... 32 5.5 2 (DU919403) 338965 Tomato EcoRI BAC Library Solanum lycopersi... 38 6.1 2 (AG896660) Oryza sativa Indica Group genomic DNA, BAC end se... 40 6.2 2 (AF303531) Tetrahymena pyriformis CCTepsilon subunit gene, c... 44 6.7 2 (EZ012570) TSA: Acropora millepora SeqIndex14767, mRNA seque... 44 8.5 1 (AC132462) Mus musculus BAC clone RP23-35F22 from chromosome... 44 8.5 1 (AC125038) Mus musculus BAC clone RP23-333P7 from chromosome... 44 8.5 1 (AC124560) Mus musculus BAC clone RP23-166O22 from chromosom... 44 8.5 1 (AC099771) Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP... 44 8.5 1 (Z74154) S.cerevisiae chromosome IV reading frame ORF YDL106c. 44 8.5 1 (X95644) S.cerevisiae DNA fragment of 38.5kb from left arm o... 44 8.5 1 (X54294) S.cerevisiae GRF10 gene (temperature sensitive). 44 8.5 1 (X54293) S.cerevisiae GRF10 gene (wild type). 44 8.5 1 (X05062) Yeast gene PHO2 for regulatory protein. 44 8.5 1 (M22259) Yeast (S.cerevisiae) PHO2 protein gene, complete cds. 44 8.5 1 (CT833694) Oryza sativa (indica cultivar-group) cDNA clone:O... 44 8.5 1 (AM480705) Vitis vinifera, whole genome shotgun sequence, co... 44 8.5 1 (AC189261) Brassica rapa subsp. pekinensis clone KBrB021P11,... 44 8.5 1 (DL344746) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 44 8.5 1 (DL338793) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 44 8.5 1 (DJ211195) Method for identification of useful proteins deri... 44 8.5 1 (DJ205242) Method for identification of useful proteins deri... 44 8.5 1 (DJ025872) Genome-wide DNA marker of Saccharomyces cerevisiae. 44 8.5 1 (BD428861) Method and nucleic acids for pharmacogenomic meth... 44 8.5 1 (AX348340) Sequence 35 from Patent WO0202806. 44 8.5 1 (GC702350) Sequence 17595 from patent US 6812339. 44 8.5 1 (AR778433) Sequence 255 from patent US 6949356. 44 8.5 1 (AM494966) Leishmania braziliensis chromosome 29. 44 8.5 1 (U91327) Human chromosome 12p15 BAC clone CIT987SK-99D8 comp... 44 8.5 1 (EU332842) Homo sapiens fibroblast growth factor receptor su... 44 8.5 1 (AP001867) Homo sapiens genomic DNA, chromosome 4q22-q24, cl... 44 8.5 1 (AC122176) Homo sapiens chromosome 3 clone RP11-294O18, comp... 44 8.5 1 (AC097469) Homo sapiens BAC clone RP11-55N4 from 4, complete... 44 8.5 1 (AC093634) Homo sapiens BAC clone RP11-168E14 from 4, comple... 44 8.5 1 (AC018921) Homo sapiens 12 BAC RP11-956E11 (Roswell Park Can... 44 8.5 1 (AC152264) Bos taurus clone CH240-4J21, WORKING DRAFT SEQUEN... 44 8.5 1 (AC135552) Canis lupus familiaris clone RP81-216B4, WORKING ... 44 8.5 1 (AC134484) Rattus norvegicus clone CH230-420G8, *** SEQUENCI... 44 8.5 1 (AC110400) Rattus norvegicus clone CH230-38C6, *** SEQUENCIN... 44 8.5 1 (AC107239) Mus musculus chromosome 5 clone RP23-411N3 map 5,... 44 8.5 1 (AC097035) Rattus norvegicus clone CH230-43C3, *** SEQUENCIN... 44 8.5 1 (FP003582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1 (CU928491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1 (CU571227) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1 (AC084189) Homo sapiens clone RP11-570F10, WORKING DRAFT SEQ... 44 8.5 1 (CU466477) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.5 1 (AC224848) Bos taurus clone CH240-474H20, WORKING DRAFT SEQU... 44 8.5 1 (AC205325) Zea mays chromosome 10 clone CH201-379M6; ZMMBBc0... 44 8.5 1 (AC203032) Zea mays chromosome 10 clone CH201-249H2; ZMMBBc0... 44 8.5 1 (AC192125) Zea mays chromosome 3 clone CH201-29H2; ZMMBBc002... 44 8.5 1 (AC169140) Oryctolagus cuniculus clone LB1-265J1, WORKING DR... 44 8.5 1 (AC009613) Homo sapiens chromosome 4 clone RP11-55N4 map 4, ... 44 8.5 1 (AZ903606) RPCI-24-216M13.TJ RPCI-24 Mus musculus genomic cl... 44 8.5 1 (AZ185836) SP_1006_A1_B05_T7A Strongylocentrotus purpuratus,... 44 8.5 1 (ET968256) CHO_OF469xk13r1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.5 1 (EK478525) 1095469499223 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.5 1 (EJ695784) 1092956017760 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1 (EJ652547) 1092954005949 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.5 1 (EJ594636) 1092961072522 Global-Ocean-Sampling_GS-29-01-01-1... 44 8.5 1 (EJ554574) 1092959483946 Global-Ocean-Sampling_GS-29-01-01-1... 44 8.5 1 (DX480460) Cpl22113 Papaya Genomic DNA BAC Library Carica pa... 44 8.5 1 (DU923840) 345270 Tomato EcoRI BAC Library Solanum lycopersi... 44 8.5 1 (CT490508) A BAC library has been constructed from cultivar ... 44 8.5 1 (CL482641) SAIL_363_G08.v1 SAIL Collection Arabidopsis thali... 44 8.5 1 (BZ673164) PUBKW53TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 8.5 1 (BH976796) odj17c03.g1 B.oleracea002 Brassica oleracea genom... 44 8.5 1 (EL737507) Osmo01642 F. cylindrus osmotic stress library Fra... 44 8.5 1 (EH770243) CNSM2862.b1_L19.ab1 CNS(LMS) yellow starthistle C... 44 8.5 1 (EH760541) CNSL6635.b1_F03.ab1 CNS(LMS) yellow starthistle C... 44 8.5 1 (EH727101) CNMM13536.b1_O23.ab1 CNM(LMS) spotted knapweed Ce... 44 8.5 1 (EH720431) CNML6858.b1_D12.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EH719547) CNML6034.b1_C22.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EH719540) CNML6028.b1_G20.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EH718842) CNML5379.b1_E01.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EH715336) CNML1654.b1_L05.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EH713318) CNML1286.b1_L09.ab1 CNM(LMS) spotted knapweed Cen... 44 8.5 1 (EC824904) SME00007735 esmbsro2 Sawyeria marylandensis cDNA,... 44 8.5 1 (CV643053) EST921806 Field isolate cDNA library Plasmodium v... 44 8.5 1 (CT852937) Oryza sativa Indica Group EST sequence:OSIGCRA118... 44 8.5 1 (CN252326) EST018258 Mycelium and yeast cells from Paracocci... 44 8.5 1 (CJ274441) Mus musculus activated spleen cDNA, RIKEN full-le... 44 8.5 1 (H21552) yn77c01.r1 Soares adult brain N2b5HB55Y Homo sapien... 44 8.5 1 (FK143837) XABT176220.b1 Gateway compatible cien cDNA librar... 44 8.5 1 (FF699006) XABT108853.fwd Gateway compatible cien cDNA libra... 44 8.5 1 (FE197983) B233H04 Antarctic fish Dissostichus mawsoni adult... 44 8.5 1 (FD584243) RS3FO78JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ... 44 8.5 1 (FD580455) RS3FO78TF RS3(RT) Raphanus sativus cDNA 5', mRNA ... 44 8.5 1 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 44 8.5 1 (CP001291) Cyanothece sp. PCC 7424, complete genome. 44 8.5 1 (CP000728) Clostridium botulinum F str. Langeland, complete ... 44 8.5 1 (AF154011) Streptococcus pneumoniae strain A60-11 surface pr... 44 8.5 1 (DT996775) CNB186-C09.y1d-s SHGC-CNB Gasterosteus aculeatus ... 40 9.3 2 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 9.7 7
>(C25576) Dictyostelium discoideum slug cDNA, clone SLA493. Length = 560
Score = 799 bits (403), Expect = 0.0 Identities = 403/403 (100%) Strand = Plus / Plus
Query: 275 ggttcagtaatatcttttattggttgtggttgtggttgttcaattaaatttggtaattca 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggttcagtaatatcttttattggttgtggttgtggttgttcaattaaatttggtaattca 60
Query: 335 ttaatttttaaaaaatttggttcaatattttgaccaagtacttgataagaaccaattggt 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttaatttttaaaaaatttggttcaatattttgaccaagtacttgataagaaccaattggt 120
Query: 395 gtattaccaactattggaacatacatattgtatacggcaggtttaaagcttgaagctggt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gtattaccaactattggaacatacatattgtatacggcaggtttaaagcttgaagctggt 180
Query: 455 gaaatcaatacatttgcatcatcactaatcgatttaatgagagagaatgaagtttttaaa 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gaaatcaatacatttgcatcatcactaatcgatttaatgagagagaatgaagtttttaaa 240
Query: 515 gattctggtggtgattgtacttttggttgtaaatcaatctttacatactttctctttggt 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gattctggtggtgattgtacttttggttgtaaatcaatctttacatactttctctttggt 300
Query: 575 aatgattgtttggtaggtcgttgagtgtattgagttggttctaaataaacattttgttgg 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aatgattgtttggtaggtcgttgagtgtattgagttggttctaaataaacattttgttgg 360
Query: 635 attggtgaattacttggaattacggctggtaaaccatagaaac 677 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 attggtgaattacttggaattacggctggtaaaccatagaaac 403
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 657,836,223 Number of extensions: 43695543 Number of successful extensions: 4087171 Number of sequences better than 10.0: 143 Length of query: 833 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 809 Effective length of database: 99,340,224,878 Effective search space: 80366241926302 Effective search space used: 80366241926302 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |