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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03792-1
Contig ID Contig-U03792-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Contig-U03792-1Q.Seq.d
TTTTTTTTTTTTTTTTTTTTTTGATTTGGATTTTAAGGGTTTTTGGTATG
AGCATATTAAATTGGGTTTTTGTTTGTTTTTTTTTTTTTTTTTTGACGAT
CGTTGTTTAGAATATACAATCTATATGATTTTAAATAAGATTAAATAGTG
CTTTTTTTTTTTTTTTTTTGGAGGTGATTTTGTTGTTGTTATTGTTGTAG
TATTATTCGCATCTTGTTGTTGTGGTTGTTGTTGTGGTTGTTGTTGTGGT
TGTTGTGATGATTCAATAATCATTGGTTCAGTAATATCTTTTATTGGTTG
TGGTTGTGGTTGTTCAATTAAATTTGGTAATTCATTAATTTTTAAAAAAT
TTGGTTCAATATTTTGACCAAGTACTTGATAAGAACCAATTGGTGTATTA
CCAACTATTGGAACATACATATTGTATACGGCAGGTTTAAAGCTTGAAGC
TGGTGAAATCAATACATTTGCATCATCACTAATCGATTTAATGAGAGAGA
ATGAAGTTTTTAAAGATTCTGGTGGTGATTGTACTTTTGGTTGTAAATCA
ATCTTTACATACTTTCTCTTTGGTAATGATTGTTTGGTAGGTCGTTGAGT
GTATTGAGTTGGTTCTAAATAAACATTTTGTTGGATTGGTGAATTACTTG
GAATTACGGCTGGTAAACCATAGAAACGTTGGTTTATTTGCATTTGTGCC
TGTTGTTGTAACATTGCTTGTTGAATCAATTGTTGTTGTTGTTGTACTGC
TGCTGCTTGTTGTTGAGCTGCTTGTTGTTGTGCTGCTGCCGCTTGTTGTG
CTGCATGTTNTGCTGCNTGTTATGCTGCTGCTG
Gap no gap
Contig length 833
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1341596
End point 1341957
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03792
List of clone(s) 

est1=SLA493E,1,834
Translated Amino Acid sequence 
ffffffliwilrvfgmsilnwvfvcfffffltivv*niqsi*f*irlnsaffffflevil
lllll*yyshlvvvvvvvvvvvvvvmiq*slvq*ylllvvvvvvqlnlvih*flknlvqy
fdqvldknqlvyyqllehtycirqv*slklvksihlhhh*si**ermkflkilvvivllv
vnqslhtfslvmivw*VVECIELVLNKHFVGLVNYLELRLVNHRNVGLFAFVPVVVTLLV
ESIVVVVVLLLLVVELLVVVLLPLVVLHVXLXVMLLL
Translated Amino Acid sequence (All Frames) 
Frame A:
fffffff*fgf*gflv*ay*igflfvfffff*rslfriynlydfk*d*ivlfffffwr*f
cccyccsiirilllwlllwlllwll**fnnhwfsnifywlwlwlfn*iw*finf*kiwfn
iltkylirtnwcitnywnihivygrfka*sw*nqyiciitnrfnere*sf*rfww*lyfw
l*inlyilslw**lfgrslsvlswf*inilldw*itwnygw*tietlvylhlclll*hcl
lnqlllllyccclllsclllcccrllccmxccxlccc


Frame B:
fffffffdldfkgfwyehiklgfclffffffddrcleytiymilnkik*cffffffggdf
vvvivvvlfascccgcccgcccgccddsiiigsvisfigcgcgcsikfgnslifkkfgsi
f*pst**epigvlptigtyilytaglkleageintfasslidlmrenevfkdsggdctfg
cksiftyflfgndclvgr*vy*vgsk*tfcwigellgitagkp*krwficicacccniac
*inccccctaaacc*aacccaaaaccaacxaacyaaa


Frame C:
ffffffliwilrvfgmsilnwvfvcfffffltivv*niqsi*f*irlnsaffffflevil
lllll*yyshlvvvvvvvvvvvvvvmiq*slvq*ylllvvvvvvqlnlvih*flknlvqy
fdqvldknqlvyyqllehtycirqv*slklvksihlhhh*si**ermkflkilvvivllv
vnqslhtfslvmivw*VVECIELVLNKHFVGLVNYLELRLVNHRNVGLFAFVPVVVTLLV
ESIVVVVVLLLLVVELLVVVLLPLVVLHVXLXVMLLL
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03792-1 (Contig-U03792-1Q)
/CSM_Contig/Contig-U03792-1Q.Seq.d
         (833 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Conti...   842  0.0
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U11799-1 (Contig-U11799-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09276-1 (Contig-U09276-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14284-1 (Contig-U14284-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13852-1 (Contig-U13852-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13424-1 (Contig-U13424-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U01343-1 (Contig-U01343-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14441-1 (Contig-U14441-1Q) /CSM_Contig/Conti...    38  0.015

>Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Contig-U03792-1Q.Seq.d
          Length = 833

 Score =  842 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus

                                                                       
Query: 257 gatgattcaataatcattggttcagtaatatcttttattggttgtggttgtggttgttca 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gatgattcaataatcattggttcagtaatatcttttattggttgtggttgtggttgttca 316

                                                                       
Query: 317 attaaatttggtaattcattaatttttaaaaaatttggttcaatattttgaccaagtact 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attaaatttggtaattcattaatttttaaaaaatttggttcaatattttgaccaagtact 376

                                                                       
Query: 377 tgataagaaccaattggtgtattaccaactattggaacatacatattgtatacggcaggt 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgataagaaccaattggtgtattaccaactattggaacatacatattgtatacggcaggt 436

                                                                       
Query: 437 ttaaagcttgaagctggtgaaatcaatacatttgcatcatcactaatcgatttaatgaga 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttaaagcttgaagctggtgaaatcaatacatttgcatcatcactaatcgatttaatgaga 496

                                                                       
Query: 497 gagaatgaagtttttaaagattctggtggtgattgtacttttggttgtaaatcaatcttt 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagaatgaagtttttaaagattctggtggtgattgtacttttggttgtaaatcaatcttt 556

                                                                       
Query: 557 acatactttctctttggtaatgattgtttggtaggtcgttgagtgtattgagttggttct 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatactttctctttggtaatgattgtttggtaggtcgttgagtgtattgagttggttct 616

                                                                       
Query: 617 aaataaacattttgttggattggtgaattacttggaattacggctggtaaaccatagaaa 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaataaacattttgttggattggtgaattacttggaattacggctggtaaaccatagaaa 676

                
Query: 677 cgttg 681
           |||||
Sbjct: 677 cgttg 681


 Score =  113 bits (57), Expect = 3e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 95  gacgatcgttgtttagaatatacaatctatatgattttaaataagattaaatagtgc 151
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  gacgatcgttgtttagaatatacaatctatatgattttaaataagattaaatagtgc 151


 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                      
Query: 23 gatttggattttaagggtttttggtatgagcatattaaattggg 66
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 gatttggattttaagggtttttggtatgagcatattaaattggg 66


 Score = 32.2 bits (16), Expect = 0.91
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 295 tggttgtggttgtggttgtt 314
           ||||||| ||||||||||||
Sbjct: 235 tggttgttgttgtggttgtt 254


 Score = 32.2 bits (16), Expect = 0.91
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 295 tggttgtggttgtggttgtt 314
           ||||||| ||||||||||||
Sbjct: 223 tggttgttgttgtggttgtt 242


>Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Contig-U12039-1Q.Seq.d
          Length = 1700

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 292 tattggttgtggttgtggttgtt 314
           |||||||||||||||||||||||
Sbjct: 895 tattggttgtggttgtggttgtt 873


 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 tggttgtggttgtggttgtt 314
           ||||||||||||||||||||
Sbjct: 673 tggttgtggttgtggttgtt 654


 Score = 34.2 bits (17), Expect = 0.23
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 297 gttgtggttgtggttgt 313
           |||||||||||||||||
Sbjct: 677 gttgtggttgtggttgt 661


 Score = 32.2 bits (16), Expect = 0.91
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 295 tggttgtggttgtggttgtt 314
           ||||||||||||| ||||||
Sbjct: 886 tggttgtggttgttgttgtt 867


>Contig-U11799-1 (Contig-U11799-1Q) /CSM_Contig/Contig-U11799-1Q.Seq.d
          Length = 1391

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 294 ttggttgtggttgtggttgtt 314
           |||||||||||||||||||||
Sbjct: 53  ttggttgtggttgtggttgtt 33


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,707
Number of Sequences: 6905
Number of extensions: 11707
Number of successful extensions: 1659
Number of sequences better than 10.0: 215
length of query: 833
length of database: 5,674,871
effective HSP length: 16
effective length of query: 817
effective length of database: 5,564,391
effective search space: 4546107447
effective search space used: 4546107447
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 7
Homology vs DNA 
Query= Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Contig-U03792-1Q.Seq.d
         (833 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C25576) Dictyostelium discoideum slug cDNA, clone SLA493.        799   0.0    1
(AU060163) Dictyostelium discoideum slug cDNA, clone SLA493.      646   0.0    2
(DX125484) OG_ABa0153O22.r OG_ABa Oryza granulata genomic cl...    52   0.035  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   0.051  9
(BU021657) QHE3a12.yg.ab1 QH_EFGHJ sunflower RHA280 Helianth...    40   0.11   2
(AC114106) Rattus norvegicus clone CH230-21N11, *** SEQUENCI...    50   0.14   1
(AC103074) Rattus norvegicus clone CH230-174A13, *** SEQUENC...    50   0.14   1
(AZ691828) ENTHW39TR Entamoeba histolytica Sheared DNA Entam...    38   0.40   2
(AM439697) Vitis vinifera contig VV79X002320.2, whole genome...    48   0.54   1
(AX346056) Sequence 1127 from Patent WO0200928.                    48   0.54   1
(AC173770) Bos taurus clone CH240-171K9, WORKING DRAFT SEQUE...    48   0.54   1
(AC164737) Bos taurus clone CH240-141J24, *** SEQUENCING IN ...    48   0.54   1
(ER822476) POTLT45TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.54   1
(EJ001634) 1091120858792 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.54   1
(BZ941114) CH240_91I2.TJ CHORI-240 Bos taurus genomic clone ...    48   0.54   1
(FD566190) RS1EX20JQ RS1(AR) Raphanus sativus var. oleiformi...    48   0.54   1
(DD010735) Diagnosis of known genetic Parameters within the ...    38   1.5    9
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    40   1.7    4
(AC166826) Mus musculus BAC clone RP23-370K22 from chromosom...    46   2.2    1
(AC159248) Mus musculus BAC clone RP24-254P11 from chromosom...    46   2.2    1
(AC004155) Mus musculus DNA from BAC 10818 containing the Er...    46   2.2    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    46   2.2    1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    46   2.2    1
(AC223736) Bos taurus clone CH240-459B17, WORKING DRAFT SEQU...    46   2.2    1
(EK034567) 1092959419920 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(EI488142) PV_GBa0103E14.r PV_GBa Phaseolus vulgaris genomic...    46   2.2    1
(EF963417) Mus musculus C57BL/6N IST12988G8HMF1 gene trap em...    46   2.2    1
(EF804289) Mus musculus C57BL/6N IST11210A3BBF1 gene trap em...    46   2.2    1
(EF766881) Mus musculus C57BL/6N IST10790C6BBF1 gene trap em...    46   2.2    1
(EF760361) Mus musculus C57BL/6N IST10598A4BBF1 gene trap em...    46   2.2    1
(EF755557) Mus musculus C57BL/6N IST10598A4HMF1 gene trap em...    46   2.2    1
(CE149653) tigr-gss-dog-17000371320060 Dog Library Canis lup...    46   2.2    1
(AM569135) Paracentrotus lividus EST, clone MPMGp1173L24114Q...    46   2.2    1
(BJ392310) Dictyostelium discoideum cDNA clone:dds27m04, 5' ...    46   2.2    1
(AA752917) 97AS0651 Rice Immature Seed Lambda ZAPII cDNA Lib...    46   2.2    1
(CR954253) Lactobacillus delbrueckii subsp. bulgaricus ATCC ...    46   2.2    1
(CP000412) Lactobacillus delbrueckii subsp. bulgaricus ATCC ...    46   2.2    1
(AE017308) Mycoplasma mobile 163K complete genome.                 46   2.2    1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   2.7    4
(AC189948) Rhesus Macaque  BAC CH250-103G2 () complete seque...    42   3.8    2
(AC148703) Macaca mulatta Major Histocompatibility Complex B...    42   3.9    2
(CR376761) Zebrafish DNA sequence from clone DKEY-6F24 in li...    34   4.0    2
(CT737255) Zebrafish DNA sequence from clone DKEY-259G19 in ...    34   4.2    2
(AC148691) Macaca mulatta Major Histocompatibility Complex B...    42   4.4    2
(AC116240) Rattus norvegicus clone CH230-158N11, *** SEQUENC...    44   4.4    2
(AC231156) Bos taurus clone CH240-97C15, WORKING DRAFT SEQUE...    44   4.5    2
(AC119736) Homo sapiens 3 BAC RP11-196G10 (Roswell Park Canc...    40   4.7    4
(BJ352995) Dictyostelium discoideum cDNA clone:dda48j18, 3' ...    34   5.4    2
(EJ732912) 1092960194709 Global-Ocean-Sampling_GS-30-02-01-1...    32   5.5    2
(DU919403) 338965 Tomato EcoRI BAC Library Solanum lycopersi...    38   6.1    2
(AG896660) Oryza sativa Indica Group genomic DNA, BAC end se...    40   6.2    2
(AF303531) Tetrahymena pyriformis CCTepsilon subunit gene, c...    44   6.7    2
(EZ012570) TSA: Acropora millepora SeqIndex14767, mRNA seque...    44   8.5    1
(AC132462) Mus musculus BAC clone RP23-35F22 from chromosome...    44   8.5    1
(AC125038) Mus musculus BAC clone RP23-333P7 from chromosome...    44   8.5    1
(AC124560) Mus musculus BAC clone RP23-166O22 from chromosom...    44   8.5    1
(AC099771) Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP...    44   8.5    1
(Z74154) S.cerevisiae chromosome IV reading frame ORF YDL106c.     44   8.5    1
(X95644) S.cerevisiae DNA fragment of 38.5kb from left arm o...    44   8.5    1
(X54294) S.cerevisiae GRF10 gene (temperature sensitive).          44   8.5    1
(X54293) S.cerevisiae GRF10 gene (wild type).                      44   8.5    1
(X05062) Yeast gene PHO2 for regulatory protein.                   44   8.5    1
(M22259) Yeast (S.cerevisiae) PHO2 protein gene, complete cds.     44   8.5    1
(CT833694) Oryza sativa (indica cultivar-group) cDNA clone:O...    44   8.5    1
(AM480705) Vitis vinifera, whole genome shotgun sequence, co...    44   8.5    1
(AC189261) Brassica rapa subsp. pekinensis clone KBrB021P11,...    44   8.5    1
(DL344746) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       44   8.5    1
(DL338793) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       44   8.5    1
(DJ211195) Method for identification of useful proteins deri...    44   8.5    1
(DJ205242) Method for identification of useful proteins deri...    44   8.5    1
(DJ025872) Genome-wide DNA marker of Saccharomyces cerevisiae.     44   8.5    1
(BD428861) Method and nucleic acids for pharmacogenomic meth...    44   8.5    1
(AX348340) Sequence 35 from Patent WO0202806.                      44   8.5    1
(GC702350) Sequence 17595 from patent US 6812339.                  44   8.5    1
(AR778433) Sequence 255 from patent US 6949356.                    44   8.5    1
(AM494966) Leishmania braziliensis chromosome 29.                  44   8.5    1
(U91327) Human chromosome 12p15 BAC clone CIT987SK-99D8 comp...    44   8.5    1
(EU332842) Homo sapiens fibroblast growth factor receptor su...    44   8.5    1
(AP001867) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    44   8.5    1
(AC122176) Homo sapiens chromosome 3 clone RP11-294O18, comp...    44   8.5    1
(AC097469) Homo sapiens BAC clone RP11-55N4 from 4, complete...    44   8.5    1
(AC093634) Homo sapiens BAC clone RP11-168E14 from 4, comple...    44   8.5    1
(AC018921) Homo sapiens 12 BAC RP11-956E11 (Roswell Park Can...    44   8.5    1
(AC152264) Bos taurus clone CH240-4J21, WORKING DRAFT SEQUEN...    44   8.5    1
(AC135552) Canis lupus familiaris clone RP81-216B4, WORKING ...    44   8.5    1
(AC134484) Rattus norvegicus clone CH230-420G8, *** SEQUENCI...    44   8.5    1
(AC110400) Rattus norvegicus clone CH230-38C6, *** SEQUENCIN...    44   8.5    1
(AC107239) Mus musculus chromosome 5 clone RP23-411N3 map 5,...    44   8.5    1
(AC097035) Rattus norvegicus clone CH230-43C3, *** SEQUENCIN...    44   8.5    1
(FP003582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU928491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU571227) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(AC084189) Homo sapiens clone RP11-570F10, WORKING DRAFT SEQ...    44   8.5    1
(CU466477) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(AC224848) Bos taurus clone CH240-474H20, WORKING DRAFT SEQU...    44   8.5    1
(AC205325) Zea mays chromosome 10 clone CH201-379M6; ZMMBBc0...    44   8.5    1
(AC203032) Zea mays chromosome 10 clone CH201-249H2; ZMMBBc0...    44   8.5    1
(AC192125) Zea mays chromosome 3 clone CH201-29H2; ZMMBBc002...    44   8.5    1
(AC169140) Oryctolagus cuniculus clone LB1-265J1, WORKING DR...    44   8.5    1
(AC009613) Homo sapiens chromosome 4 clone RP11-55N4 map 4, ...    44   8.5    1
(AZ903606) RPCI-24-216M13.TJ RPCI-24 Mus musculus genomic cl...    44   8.5    1
(AZ185836) SP_1006_A1_B05_T7A Strongylocentrotus purpuratus,...    44   8.5    1
(ET968256) CHO_OF469xk13r1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.5    1
(EK478525) 1095469499223 Global-Ocean-Sampling_GS-32-01-01-1...    44   8.5    1
(EJ695784) 1092956017760 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(EJ652547) 1092954005949 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(EJ594636) 1092961072522 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.5    1
(EJ554574) 1092959483946 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.5    1
(DX480460) Cpl22113 Papaya Genomic DNA BAC Library Carica pa...    44   8.5    1
(DU923840) 345270 Tomato EcoRI BAC Library Solanum lycopersi...    44   8.5    1
(CT490508) A BAC library has been constructed from cultivar ...    44   8.5    1
(CL482641) SAIL_363_G08.v1 SAIL Collection Arabidopsis thali...    44   8.5    1
(BZ673164) PUBKW53TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   8.5    1
(BH976796) odj17c03.g1 B.oleracea002 Brassica oleracea genom...    44   8.5    1
(EL737507) Osmo01642 F. cylindrus osmotic stress library Fra...    44   8.5    1
(EH770243) CNSM2862.b1_L19.ab1 CNS(LMS) yellow starthistle C...    44   8.5    1
(EH760541) CNSL6635.b1_F03.ab1 CNS(LMS) yellow starthistle C...    44   8.5    1
(EH727101) CNMM13536.b1_O23.ab1 CNM(LMS) spotted knapweed Ce...    44   8.5    1
(EH720431) CNML6858.b1_D12.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EH719547) CNML6034.b1_C22.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EH719540) CNML6028.b1_G20.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EH718842) CNML5379.b1_E01.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EH715336) CNML1654.b1_L05.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EH713318) CNML1286.b1_L09.ab1 CNM(LMS) spotted knapweed Cen...    44   8.5    1
(EC824904) SME00007735 esmbsro2 Sawyeria marylandensis cDNA,...    44   8.5    1
(CV643053) EST921806 Field isolate cDNA library Plasmodium v...    44   8.5    1
(CT852937) Oryza sativa Indica Group EST sequence:OSIGCRA118...    44   8.5    1
(CN252326) EST018258 Mycelium and yeast cells from Paracocci...    44   8.5    1
(CJ274441) Mus musculus activated spleen cDNA, RIKEN full-le...    44   8.5    1
(H21552) yn77c01.r1 Soares adult brain N2b5HB55Y Homo sapien...    44   8.5    1
(FK143837) XABT176220.b1 Gateway compatible cien cDNA librar...    44   8.5    1
(FF699006) XABT108853.fwd Gateway compatible cien cDNA libra...    44   8.5    1
(FE197983) B233H04 Antarctic fish Dissostichus mawsoni adult...    44   8.5    1
(FD584243) RS3FO78JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    44   8.5    1
(FD580455) RS3FO78TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    44   8.5    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   8.5    1
(CP001291) Cyanothece sp. PCC 7424, complete genome.               44   8.5    1
(CP000728) Clostridium botulinum F str. Langeland, complete ...    44   8.5    1
(AF154011) Streptococcus pneumoniae strain A60-11 surface pr...    44   8.5    1
(DT996775) CNB186-C09.y1d-s SHGC-CNB Gasterosteus aculeatus ...    40   9.3    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   9.7    7

>(C25576) Dictyostelium discoideum slug cDNA, clone SLA493.
          Length = 560

 Score =  799 bits (403), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Plus


Query: 275 ggttcagtaatatcttttattggttgtggttgtggttgttcaattaaatttggtaattca 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggttcagtaatatcttttattggttgtggttgtggttgttcaattaaatttggtaattca 60


Query: 335 ttaatttttaaaaaatttggttcaatattttgaccaagtacttgataagaaccaattggt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttaatttttaaaaaatttggttcaatattttgaccaagtacttgataagaaccaattggt 120


Query: 395 gtattaccaactattggaacatacatattgtatacggcaggtttaaagcttgaagctggt 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtattaccaactattggaacatacatattgtatacggcaggtttaaagcttgaagctggt 180


Query: 455 gaaatcaatacatttgcatcatcactaatcgatttaatgagagagaatgaagtttttaaa 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaatcaatacatttgcatcatcactaatcgatttaatgagagagaatgaagtttttaaa 240


Query: 515 gattctggtggtgattgtacttttggttgtaaatcaatctttacatactttctctttggt 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattctggtggtgattgtacttttggttgtaaatcaatctttacatactttctctttggt 300


Query: 575 aatgattgtttggtaggtcgttgagtgtattgagttggttctaaataaacattttgttgg 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgattgtttggtaggtcgttgagtgtattgagttggttctaaataaacattttgttgg 360


Query: 635 attggtgaattacttggaattacggctggtaaaccatagaaac 677
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attggtgaattacttggaattacggctggtaaaccatagaaac 403

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 657,836,223
Number of extensions: 43695543
Number of successful extensions: 4087171
Number of sequences better than 10.0: 143
Length of query: 833
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 809
Effective length of database: 99,340,224,878
Effective search space: 80366241926302
Effective search space used: 80366241926302
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03792-1 (Contig-U03792-1Q) /CSM_Contig/Contig-U03792-1Q.Seq.d
         (833 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000117_2802(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   3.1
FJ263048_1(FJ263048|pid:none) Nilaparvata lugens ecdysteroid rec...    35   3.1
(Q54DP0) RecName: Full=Uncharacterized protein DDB_G0292106;           34   5.2
CP000879_1456(CP000879|pid:none) Petrotoga mobilis SJ95, complet...    34   5.2
CP000117_163(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    34   6.8
(P62690) RecName: Full=HERV-K_22q11.23 provirus ancestral Gag po...    34   6.8

>CP000117_2802(CP000117|pid:none) Anabaena variabilis ATCC 29413,
           complete genome.
          Length = 256

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 681 QRFYGLPAVIPSNSPIQQNVYLEPTQYTQRPTKQSLPKRK 562
           Q FYG PA++ S + + QN+   PT Y +   K +L K K
Sbjct: 16  QTFYGTPAILSSQNVLSQNLLEYPTLYEEEVIKTALEKYK 55

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 830,461,537
Number of extensions: 14108079
Number of successful extensions: 37025
Number of sequences better than 10.0: 6
Number of HSP's gapped: 36980
Number of HSP's successfully gapped: 6
Length of query: 277
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 150
Effective length of database: 646,092,785
Effective search space: 96913917750
Effective search space used: 96913917750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.04  top: 0.30  tms: 0.20  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03792-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0