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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03777-1
Contig ID Contig-U03777-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Contig-U03777-1Q.Seq.d
AAATAAAAAATAAATAATAAATAAAACCAAATAAATAATATATAAATAAA
AAAATGGAGAATCAATTATTTCAATTAAAATTTACATCAAAACAATTAGA
AAAACAATCAAAGAAATCAGAACAAAGTGAAAAAGCACAAAAGATAAAAT
TAAAGAAAGCAATAGAACAAGGTAATATGGATGGCGCTAGAATATATGCA
CAAAATGCAATTCGTGAAAAGAATCAAAGTTTAAATTATTTACGTTTAGC
TTCAAGAATTGATGCAGTTGCAAGTAGAGTTGAAACTGCAATTCGTATGA
AATCAGTTACAGGTTCAATGGCAAACATTGTTAAATCAATGGAGAAATCA
ATGAGAAATATGGATTTAGAAAAGATTACCCAAGTTATGGATCAATTCGA
AAGACAATTCGAAGATTTAGATGTACAATCAGTTTATGTAGAGAATGCAA
TGAATCAAACTACTACACTTTCAACTCCAGCCGATCAAGTAGACCTTTTA
ATTTCACAAGTTGCCGATGAACATGGTTTAAATGTTGGTATGCAAATGGG
TTCAGCACCTTCCGAAAAAGTACAACAAGGTGAAACCGATGAATTAACCG
AAAGATTAAATAGATTAAAACAAAAAAATTAATTTTATTTCAATAAATAA
AAA
Gap no gap
Contig length 653
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1653565
End point 1652912
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U03777
List of clone(s) 

est1=VSF742Z,1,565
est2=SLA257Z,79,654
Translated Amino Acid sequence 
iknk**ikpnk*YINKKMENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMD
GARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNM
DLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGM
QMGSAPSEKVQQGETDELTERLNRLKQKN*fyfnk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
k*kinnk*nqinni*ikkwrinyfn*nlhqnn*knnqrnqnkvkkhkr*n*rkq*nkviw
maleymhkmqfvkrikv*iiyv*lqelmqlqvelklqfv*nqlqvqwqtllnqwrnq*ei
wi*krlpklwinskdnski*mynqfm*rmq*ikllhfqlqpik*tf*fhklpmnmv*mlv
ckwvqhlpkkynkvkpmn*pkd*id*nkkinfisink


Frame B:
nkk*iinktk*iiyk*kngesiisikiyiktirktikeirtk*kstkdkikesnrtr*yg
wr*nictkcns*keskfklftfsfkn*csck*s*ncnsyeisyrfngkhc*ingeineky
gfrkdypsygsirktirrfrctislcrecnesnyytfnssrssrpfnftscr*twfkcwy
angfstfrksttr*nr*inrkik*iktkklilfq*ik


Frame C:
iknk**ikpnk*YINKKMENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMD
GARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNM
DLEKITQVMDQFERQFEDLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGM
QMGSAPSEKVQQGETDELTERLNRLKQKN*fyfnk*k
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03777-1 (Contig-U03777-1Q)
/CSM_Contig/Contig-U03777-1Q.Seq.d
         (653 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Conti...   957  0.0
Contig-U13296-1 (Contig-U13296-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U10806-1 (Contig-U10806-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U05930-1 (Contig-U05930-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14735-1 (Contig-U14735-1Q) /CSM_Contig/Conti...    32  0.71
Contig-U14515-1 (Contig-U14515-1Q) /CSM_Contig/Conti...    32  0.71
Contig-U12918-1 (Contig-U12918-1Q) /CSM_Contig/Conti...    32  0.71
Contig-U12702-1 (Contig-U12702-1Q) /CSM_Contig/Conti...    32  0.71
Contig-U12682-1 (Contig-U12682-1Q) /CSM_Contig/Conti...    32  0.71

>Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Contig-U03777-1Q.Seq.d
          Length = 653

 Score =  957 bits (483), Expect = 0.0
 Identities = 497/504 (98%)
 Strand = Plus / Plus

                                                                       
Query: 150 ttaaagaaagcaatagaacaaggtaatatggatggcgctagaatatatgcacaaaatgca 209
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ttaaagaaagcaatagaacaaggtaatatggatggcgctagaatatatgcacaaaatgca 209

                                                                       
Query: 210 attcgtgaaaagaatcaaagtttaaattatttacgtttagcttcaagaattgatgcagtt 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attcgtgaaaagaatcaaagtttaaattatttacgtttagcttcaagaattgatgcagtt 269

                                                                       
Query: 270 gcaagtagagttgaaactgcaattcgtatgaaatcagttacaggttcaatggcaaacatt 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcaagtagagttgaaactgcaattcgtatgaaatcagttacaggttcaatggcaaacatt 329

                                                                       
Query: 330 gttaaatcaatggagaaatcaatgagaaatatggatttagaaaagattacccaagttatg 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gttaaatcaatggagaaatcaatgagaaatatggatttagaaaagattacccaagttatg 389

                                                                       
Query: 390 gatcaattcgaaagacaattcgaagatttagatgtacaatcagtttatgtagagaatgca 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gatcaattcgaaagacaattcgaagatttagatgtacaatcagtttatgtagagaatgca 449

                                                                       
Query: 450 atgaatcaaactactacactttcaactccagccgatcaagtagaccttttaatttcacaa 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atgaatcaaactactacactttcaactccagccgatcaagtagaccttttaatttcacaa 509

                                                                       
Query: 510 gttgccgatgaacatggtttaaatgttggtatgcaaatgggttcagcaccttccgaaaaa 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gttgccgatgaacatggtttaaatgttggtatgcaaatgggttcagcaccttccgaaaaa 569

                                                                       
Query: 570 gtacaacaaggtgaaaccgatgaattaaccgaaagattaaatagattaaaacnnnnnnnt 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 570 gtacaacaaggtgaaaccgatgaattaaccgaaagattaaatagattaaaacaaaaaaat 629

                                   
Query: 630 taattttatttcaataaataaaaa 653
           ||||||||||||||||||||||||
Sbjct: 630 taattttatttcaataaataaaaa 653


 Score = 61.9 bits (31), Expect = 8e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 55 tggagaatcaattatttcaattaaaatttac 85
          |||||||||||||||||||||||||||||||
Sbjct: 55 tggagaatcaattatttcaattaaaatttac 85


>Contig-U13296-1 (Contig-U13296-1Q) /CSM_Contig/Contig-U13296-1Q.Seq.d
          Length = 604

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 524 tggtttaaatgttggta 540
           |||||||||||||||||
Sbjct: 267 tggtttaaatgttggta 283


>Contig-U10806-1 (Contig-U10806-1Q) /CSM_Contig/Contig-U10806-1Q.Seq.d
          Length = 1315

 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 631  aattttatttcaataaa 647
            |||||||||||||||||
Sbjct: 1200 aattttatttcaataaa 1216


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8779
Number of Sequences: 6905
Number of extensions: 8779
Number of successful extensions: 761
Number of sequences better than 10.0: 80
length of query: 653
length of database: 5,674,871
effective HSP length: 16
effective length of query: 637
effective length of database: 5,564,391
effective search space: 3544517067
effective search space used: 3544517067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 7
Homology vs DNA 
Query= Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Contig-U03777-1Q.Seq.d
         (653 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY484465) Dictyostelium discoideum kinesin family member 12...   892   0.0    2
(AF081802) Dictyostelium discoideum developmental protein DG...   892   0.0    2
(C25550) Dictyostelium discoideum slug cDNA, clone SLA257.        892   0.0    2
(AU265716) Dictyostelium discoideum vegetative cDNA clone:VS...   779   0.0    1
(AU037406) Dictyostelium discoideum slug cDNA, clone SSD596.      117   4e-31  2
(CB284867) DF1684 Dermatophagoides farinae cDNA library Derm...    64   2e-11  2
(EL577848) Physarum00786 Physarum polycephalum starvation st...    66   2e-06  1
(CB284164) DF0887 Dermatophagoides farinae cDNA library Derm...    64   7e-06  1
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    48   2e-05  2
(EL741937) LV0233070 Taenia solium UNAM-cd2_larva Taenia sol...    46   3e-05  2
(EL742321) LV0240016 Taenia solium UNAM-cd2_larva Taenia sol...    46   3e-05  2
(EL748013) LV0332035 Taenia solium UNAM-cd2_larva Taenia sol...    46   3e-05  2
(EL743142) LV0252043 Taenia solium UNAM-cd2_larva Taenia sol...    46   3e-05  2
(EC745387) PSE00005041 rw_mgpallid Polysphondylium pallidum ...    60   1e-04  1
(AL112613) Botrytis cinerea strain T4 cDNA library.                54   3e-04  2
(AL111027) Botrytis cinerea strain T4 cDNA library.                54   3e-04  2
(EB804511) 3476_D15 Botrytis cinerea expressed sequence tags...    54   0.007  1
(AC167995) Bos taurus clone CH240-202P11, WORKING DRAFT SEQU...    50   0.11   1
(EL742117) LV0237005 Taenia solium UNAM-cd2_larva Taenia sol...    46   0.19   2
(ES397092) MUT06-L07.x1d-t SHGC-MUT Mytilus californianus cD...    46   0.33   2
(AX348523) Sequence 31 from Patent WO0202809.                      48   0.42   1
(AX346294) Sequence 1365 from Patent WO0200928.                    48   0.42   1
(CR940348) Theileria annulata genomic DNA chromosome 2.            46   1.7    1
(EK250345) 1095460276953 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.7    1
(DT583336) wmi03-4ms1-a01 Wmi03 Welwitschia mirabilis cDNA c...    46   1.7    1
(CO746860) tah95e09.y1 Hydra EST UCI 5 Hydra magnipapillata ...    46   1.7    1
(CD645646) SSPG604 SS pectin Sclerotinia sclerotiorum cDNA s...    46   1.7    1
(CB282440) BT0413 Blomia tropicalis cDNA library Blomia trop...    46   1.7    1
(GH707324) Ap-BrOvp-V-F12 Ap-BrOvp Acyrthosiphon pisum cDNA ...    46   1.7    1
(BB367599) Mus musculus 16 days embryo head cDNA, RIKEN full...    46   1.7    1
(BQ767594) EBro08_SQ009_G12_R root, 3 week, drought-stressed...    34   3.0    2
(AC187078) Zea mays chromosome 8 clone CH201-209C18; ZMMBBc0...    36   3.2    4
(AC159487) Bos taurus clone CH240-75J18, WORKING DRAFT SEQUE...    44   3.3    4
(AC225490) Medicago truncatula clone mth2-3k13, WORKING DRAF...    34   3.3    5
(FK733177) av01037j23r1.1 Symbiotic sea anemone (Anemonia vi...    42   3.3    2
(EK187384) 1095460006441 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.3    2
(EK230386) 1095460177292 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.3    2
(GE320211) OXBB-aaa41f06.b1 Oxytricha_pSMART_OXBB Sterkiella...    34   4.4    2
(AC121870) Mus musculus chromosome 9 clone RP24-121D5, compl...    44   6.6    1
(AM461693) Vitis vinifera contig VV78X185357.4, whole genome...    44   6.6    1
(DD349238) Novel nucleic acid sequences and proteins of tumo...    44   6.6    1
(AX951695) Sequence 12 from Patent WO03093310.                     44   6.6    1
(AC105422) Homo sapiens BAC clone RP11-707O8 from 2, complet...    44   6.6    1
(AC092615) Homo sapiens BAC clone RP11-204D19 from 2, comple...    44   6.6    1
(AC016721) Homo sapiens BAC clone RP11-327J6 from 2, complet...    44   6.6    1
(AC116619) Homo sapiens chromosome UNK clone RP11-144O24, **...    44   6.6    1
(AC193495) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   6.6    1
(AC170842) Bos taurus clone CH240-261J10, WORKING DRAFT SEQU...    44   6.6    1
(ER882133) MUGQ_CH252P274D09T7_CN577_045 CHORI-252 Vervet Mo...    44   6.6    1
(ER621902) 1093017436522 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.6    1
(ER472108) 1092963965700 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.6    1
(EK389939) 1095469497446 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.6    1
(EK355028) 1095468492698 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.6    1
(EK126211) 1092984401060 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.6    1
(EK106824) 1092963058401 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.6    1
(ED994950) MUGQ_CH252P160D07Sp6_CN189_030 CHORI-252 Vervet M...    44   6.6    1
(CL552161) OB__Ba0094H17.f OB__Ba Oryza brachyantha genomic ...    44   6.6    1
(EC981139) WIN1111.C21_P15 Muscat Hamburg pre-veraison berry...    44   6.6    1
(AV675170) Ciona intestinalis cDNA clone:citb11g15 : 5' end,...    44   6.6    1
(CV221943) Le_mx0_54e03_SP6 Little Skate Multiple Tissues, N...    44   6.6    1
(CV067353) Le_mx0_32e05_SP6 Little Skate Multiple Tissues, N...    44   6.6    1
(BY951209) Physcomitrella patens subsp. patens cDNA clone: P...    44   6.6    1
(BW484042) Ciona intestinalis cDNA, clone:cima034n14, 5'end,...    44   6.6    1
(BW478938) Ciona intestinalis cDNA, clone:cima019l12, 5'end,...    44   6.6    1
(BW351291) Ciona intestinalis cDNA, clone:ciem848b14, 5'end,...    44   6.6    1
(BW343752) Ciona intestinalis cDNA, clone:ciem825h14, 5'end,...    44   6.6    1
(BW333779) Ciona intestinalis cDNA, clone:cidg846d01, 5'end,...    44   6.6    1
(BW329754) Ciona intestinalis cDNA, clone:cidg834i17, 5'end,...    44   6.6    1
(BW314857) Ciona intestinalis cDNA, clone:ciht039p10, 5' end...    44   6.6    1
(BW306489) Ciona intestinalis cDNA, clone:ciht013l09, 5' end...    44   6.6    1
(BW264789) Ciona intestinalis cDNA, clone:cign039f14, 5' end...    44   6.6    1
(BW253968) Ciona intestinalis cDNA, clone:citb098e04, 5' end...    44   6.6    1
(BW215008) Ciona intestinalis cDNA, clone:cieg078h12, 5' end...    44   6.6    1
(BW106575) Ciona intestinalis cDNA, clone:rcicl038m23, 3' en...    44   6.6    1
(BW054445) Ciona intestinalis cDNA, clone:cibd080h16, 5' end...    44   6.6    1
(BW044083) Ciona intestinalis cDNA, clone:cibd054j03, 5' end...    44   6.6    1
(BW041187) Ciona intestinalis cDNA, clone:cibd045n07, 5' end...    44   6.6    1
(BW031080) Ciona intestinalis cDNA, clone:cibd017d17, 5' end...    44   6.6    1
(BP007723) Ciona intestinalis cDNA, clone:ciad45i23, 5' end,...    44   6.6    1
(BP006088) Ciona intestinalis cDNA, clone:ciad39o14, 5' end,...    44   6.6    1
(BM960566) cihA6M11S Ascidian hemocytes cDNA library Ciona i...    44   6.6    1
(GE766549) LE_MX1_43H05_SP6 Skate Multiple Tissues, Normaliz...    44   6.6    1
(GE765548) LE_MX1_30G02_SP6 Skate Multiple Tissues, Normaliz...    44   6.6    1
(FK192032) XABT205956.b1 Gateway compatible cien cDNA librar...    44   6.6    1
(FF997446) CBWU113916.b1 Yutaka Satou unpublished cDNA libra...    44   6.6    1
(FF987561) CBWU99511.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF965847) CBWU90634.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF964521) CBWU89828.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF963851) CBWU89410.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF950740) CBWU80981.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF922990) CBWU63014.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF891392) CBWU27615.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF885495) CBWU23726.b1 Yutaka Satou unpublished cDNA librar...    44   6.6    1
(FF855012) CBWU5072.b1 Yutaka Satou unpublished cDNA library...    44   6.6    1
(FF739796) XABT51932.fwd Gateway compatible cien cDNA librar...    44   6.6    1
(FF720093) XABT37531.fwd Gateway compatible cien cDNA librar...    44   6.6    1
(FE422560) CBTX3394.fwd CBTX_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE422559) CBTX3394.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE421427) CBTX2577.fwd CBTX_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE421426) CBTX2577.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE407059) CBTT5107.fwd CBTT_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE402809) CBTS4208.fwd CBTS_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE402808) CBTS4208.rev CBTS_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE398480) CBTS1429.fwd CBTS_Daphnia_pulex_Chosen_One_Librar...    44   6.6    1
(FE284186) CANH2294.fwd CANH_Daphnia_pulex_Log50_Library_21 ...    44   6.6    1
(EX162526) MW_DP0521 Dermatophagoides pteronyssinus cDNA lib...    44   6.6    1
(EX162508) MW_DP0501 Dermatophagoides pteronyssinus cDNA lib...    44   6.6    1
(EX162128) MW_DP0047 Dermatophagoides pteronyssinus cDNA lib...    44   6.6    1
(AV980978) Ciona intestinalis cDNA, clone:cicl43d24, 5' end,...    44   6.6    1
(AV971449) Ciona intestinalis cDNA, clone:cieg18b03, 5' end,...    44   6.6    1
(AV954058) Ciona intestinalis cDNA, clone:cicl10e17, 5' end,...    44   6.6    1
(AV950945) Ciona intestinalis cDNA, clone:cicl05i03, 5' end,...    44   6.6    1
(AV867991) Ciona intestinalis cDNA, clone:rcieg53m07, 3' end...    44   6.6    1
(AV867791) Ciona intestinalis cDNA, clone:rcieg53a09, 3' end...    44   6.6    1
(CP000269) Janthinobacterium sp. Marseille, complete genome.       44   6.6    1
(AC222897) Bos taurus clone CH240-435B20, WORKING DRAFT SEQU...    40   6.6    3
(CT030701) Mouse DNA sequence from clone RP23-51A2 on chromo...    42   6.9    4
(CT686613) Danio rerio EST, clone ZF_mu_152n19 5'.                 40   7.2    2
(CT689214) Danio rerio EST, clone ZF_mu_152m19 3'.                 40   7.5    2
(CT686614) Danio rerio EST, clone ZF_mu_152n19 3'.                 40   7.5    2
(AG940154) Drosophila ananassae DNA, clone: DNB1-012A20.F.fa...    34   9.0    2
(AG943182) Drosophila ananassae DNA, clone: DNB1-017F13.F.fa...    34   9.1    2
(CU633335) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.8    2

>(AY484465) Dictyostelium discoideum kinesin family member 12 gene,
            complete cds.
          Length = 6808

 Score =  892 bits (450), Expect(2) = 0.0
 Identities = 450/450 (100%)
 Strand = Plus / Minus


Query: 172  gtaatatggatggcgctagaatatatgcacaaaatgcaattcgtgaaaagaatcaaagtt 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5637 gtaatatggatggcgctagaatatatgcacaaaatgcaattcgtgaaaagaatcaaagtt 5578


Query: 232  taaattatttacgtttagcttcaagaattgatgcagttgcaagtagagttgaaactgcaa 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5577 taaattatttacgtttagcttcaagaattgatgcagttgcaagtagagttgaaactgcaa 5518


Query: 292  ttcgtatgaaatcagttacaggttcaatggcaaacattgttaaatcaatggagaaatcaa 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 ttcgtatgaaatcagttacaggttcaatggcaaacattgttaaatcaatggagaaatcaa 5458


Query: 352  tgagaaatatggatttagaaaagattacccaagttatggatcaattcgaaagacaattcg 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 tgagaaatatggatttagaaaagattacccaagttatggatcaattcgaaagacaattcg 5398


Query: 412  aagatttagatgtacaatcagtttatgtagagaatgcaatgaatcaaactactacacttt 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5397 aagatttagatgtacaatcagtttatgtagagaatgcaatgaatcaaactactacacttt 5338


Query: 472  caactccagccgatcaagtagaccttttaatttcacaagttgccgatgaacatggtttaa 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5337 caactccagccgatcaagtagaccttttaatttcacaagttgccgatgaacatggtttaa 5278


Query: 532  atgttggtatgcaaatgggttcagcaccttccgaaaaagtacaacaaggtgaaaccgatg 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277 atgttggtatgcaaatgggttcagcaccttccgaaaaagtacaacaaggtgaaaccgatg 5218


Query: 592  aattaaccgaaagattaaatagattaaaac 621
            ||||||||||||||||||||||||||||||
Sbjct: 5217 aattaaccgaaagattaaatagattaaaac 5188

 Score = 50.1 bits (25), Expect(2) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 629  ttaattttatttcaataaataaaaa 653
            |||||||||||||||||||||||||
Sbjct: 5180 ttaattttatttcaataaataaaaa 5156

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 587,253,808
Number of extensions: 36903143
Number of successful extensions: 2684033
Number of sequences better than 10.0: 124
Length of query: 653
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 629
Effective length of database: 99,340,224,878
Effective search space: 62485001448262
Effective search space used: 62485001448262
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03777-1 (Contig-U03777-1Q) /CSM_Contig/Contig-U03777-1Q.Seq.d
         (653 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O96552) RecName: Full=Charged multivesicular body protein 1; Al...   312   6e-84
DQ311345_1(DQ311345|pid:none) Bombyx mori chromatin modifying pr...   186   5e-46
AE017341_438(AE017341|pid:none) Cryptococcus neoformans var. neo...   181   1e-44
(Q5ZKX1) RecName: Full=Charged multivesicular body protein 1b; A...   177   2e-43
AK014091_1(AK014091|pid:none) Mus musculus 13 days embryo head c...   175   1e-42
(Q7LBR1) RecName: Full=Charged multivesicular body protein 1b; A...   174   2e-42
(Q99LU0) RecName: Full=Charged multivesicular body protein 1b-1;...   174   2e-42
AF281064_1(AF281064|pid:none) Homo sapiens CHMP1.5 mRNA, complet...   174   2e-42
BC168175_1(BC168175|pid:none) Rattus norvegicus chromatin modify...   174   2e-42
AE014296_3224(AE014296|pid:none) Drosophila melanogaster chromos...   173   5e-42
BT075842_1(BT075842|pid:none) Caligus rogercresseyi clone crog-e...   172   6e-42
BT074735_1(BT074735|pid:none) Osmerus mordax clone omor-rgc-501-...   172   8e-42
(Q7ZVB1) RecName: Full=Charged multivesicular body protein 1b; A...   172   8e-42
BT057167_1(BT057167|pid:none) Salmo salar clone ssal-rgb2-640-12...   170   4e-41
(Q6DF27) RecName: Full=Charged multivesicular body protein 1b; A...   169   7e-41
AK167614_1(AK167614|pid:none) Mus musculus 13 days pregnant adul...   169   7e-41
BT056837_1(BT056837|pid:none) Salmo salar clone ssal-eve-562-216...   169   7e-41
BT073648_1(BT073648|pid:none) Oncorhynchus mykiss clone omyk-evn...   167   2e-40
FM992692_262(FM992692|pid:none) Candida dubliniensis CD36 chromo...   166   7e-40
AK118350_1(AK118350|pid:none) Arabidopsis thaliana At1g17730 mRN...   165   1e-39
CR382139_212(CR382139|pid:none) Debaryomyces hansenii strain CBS...   164   2e-39
CR382129_389(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   164   3e-39
AY084868_1(AY084868|pid:none) Arabidopsis thaliana clone 119909 ...   163   4e-39
AY217740_1(AY217740|pid:none) Nicotiana benthamiana putative dev...   163   5e-39
BT007553_1(BT007553|pid:none) Synthetic construct Homo sapiens p...   162   6e-39
(Q5R605) RecName: Full=Charged multivesicular body protein 1a; A...   162   6e-39
EF082581_1(EF082581|pid:none) Picea sitchensis clone WS0297_J10 ...   162   6e-39
BC168427_1(BC168427|pid:none) Xenopus tropicalis cDNA clone MGC:...   162   8e-39
AM494971_438(AM494971|pid:none) Leishmania braziliensis chromoso...   162   8e-39
(Q6NUD8) RecName: Full=Charged multivesicular body protein 1a; A...   162   8e-39
BT074798_1(BT074798|pid:none) Osmerus mordax clone omor-eva-505-...   161   1e-38
(Q6PHF0) RecName: Full=Charged multivesicular body protein 1a; A...   161   1e-38
AM502253_452(AM502253|pid:none) Leishmania infantum chromosome 35.    160   4e-38
BT051673_1(BT051673|pid:none) Medicago truncatula clone MTYF5_F6...   159   5e-38
BC067665_1(BC067665|pid:none) Danio rerio chromatin modifying pr...   158   1e-37
EU096087_1(EU096087|pid:none) Hordeum vulgare subsp. vulgare SAL...   156   6e-37
AK061733_1(AK061733|pid:none) Oryza sativa Japonica Group cDNA c...   156   6e-37
AY243475_1(AY243475|pid:none) Zea mays superal1 (Sal1) mRNA, com...   155   1e-36
CP001576_212(CP001576|pid:none) Micromonas sp. RCC299 chromosome...   154   3e-36
EU961781_1(EU961781|pid:none) Zea mays clone 238223 charged mult...   154   3e-36
AM931535_1(AM931535|pid:none) Hordeum vulgare partial sal1 gene ...   152   6e-36
AF106583_3(AF106583|pid:none) Caenorhabditis elegans cosmid F23C...   152   8e-36
AM931536_1(AM931536|pid:none) Hordeum vulgare subsp. vulgare par...   151   1e-35
FN392319_936(FN392319|pid:none) Pichia pastoris GS115 chromosome...   150   4e-35
FN357440_32(FN357440|pid:none) Schistosoma mansoni genome sequen...   149   5e-35
DQ480534_1(DQ480534|pid:none) Schistosoma mansoni vacuolar assem...   147   2e-34
(P69771) RecName: Full=Vacuolar protein-sorting-associated prote...   138   2e-31
S78566(S78566)FTI1 protein - yeast (Saccharomyces cerevisiae)         138   2e-31
CR380958_129(CR380958|pid:none) Candida glabrata strain CBS138 c...   137   3e-31
AE016819_301(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   135   1e-30
CR382126_920(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   134   2e-30
CU928176_159(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   134   3e-30
CU928169_660(CU928169|pid:none) Kluyveromyces thermotolerans str...   133   4e-30
CT005270_227(CT005270|pid:none) Leishmania major strain Friedlin...   132   7e-30
AY223428_1(AY223428|pid:none) Schistosoma japonicum clone ZZZ394...   132   1e-29
AY813638_1(AY813638|pid:none) Schistosoma japonicum SJCHGC01919 ...   131   2e-29
FN319193_1(FN319193|pid:none) Schistosoma japonicum isolate Anhu...   131   2e-29
AK302055_1(AK302055|pid:none) Homo sapiens cDNA FLJ57657 complet...   122   1e-26
BT046538_1(BT046538|pid:none) Salmo salar clone ssal-eve-552-214...   109   6e-23
AY811600_1(AY811600|pid:none) Schistosoma japonicum SJCHGC02210 ...   107   4e-22
AY814098_1(AY814098|pid:none) Schistosoma japonicum SJCHGC06933 ...   103   4e-21
AY223258_1(AY223258|pid:none) Schistosoma japonicum clone ZZD443...   100   6e-20
AE014297_4075(AE014297|pid:none) Drosophila melanogaster chromos...    84   5e-15
AJ628544_1(AJ628544|pid:none) Arabidopsis thaliana partial At2g0...    81   2e-14
CR940347_795(CR940347|pid:none) Theileria annulata strain Ankara...    81   3e-14
BT057370_1(BT057370|pid:none) Salmo salar clone ssal-evd-571-229...    80   4e-14
D84478(D84478)hypothetical protein At2g06530 [imported] - Arabid...    80   7e-14
(Q701F9) RecName: Full=Vacuolar protein sorting-associated prote...    80   7e-14
AY088685_1(AY088685|pid:none) Arabidopsis thaliana clone 91878 m...    80   7e-14
AJ628449_1(AJ628449|pid:none) Arabidopsis thaliana partial At2g0...    80   7e-14
BT073784_1(BT073784|pid:none) Oncorhynchus mykiss clone omyk-evo...    80   7e-14
AJ628535_1(AJ628535|pid:none) Arabidopsis thaliana partial At2g0...    80   7e-14
BT078425_1(BT078425|pid:none) Lepeophtheirus salmonis Pacific fo...    79   9e-14
BT078268_1(BT078268|pid:none) Lepeophtheirus salmonis Pacific fo...    79   1e-13
AM425689_1(AM425689|pid:none) Vitis vinifera contig VV78X267041....    79   2e-13
BT075992_1(BT075992|pid:none) Caligus rogercresseyi clone crog-e...    77   3e-13
AY890758_1(AY890758|pid:none) Synthetic construct Homo sapiens c...    76   8e-13
(Q9DB34) RecName: Full=Charged multivesicular body protein 2a; A...    76   8e-13
BT065136_1(BT065136|pid:none) Zea mays full-length cDNA clone ZM...    76   1e-12
(Q7ZW25) RecName: Full=Charged multivesicular body protein 2a; A...    76   1e-12
BT081330_1(BT081330|pid:none) Caligus clemensi clone ccle-evs-50...    76   1e-12
BC152230_1(BC152230|pid:none) Danio rerio putative breast adenoc...    75   1e-12
BC102258_1(BC102258|pid:none) Bos taurus chromatin modifying pro...    75   2e-12
(Q6DFS6) RecName: Full=Charged multivesicular body protein 2a; A...    75   2e-12
BT076646_1(BT076646|pid:none) Caligus rogercresseyi clone crog-e...    75   2e-12
BT081097_1(BT081097|pid:none) Caligus clemensi clone ccle-evs-51...    75   2e-12
(Q5ZHN1) RecName: Full=Charged multivesicular body protein 2a; A...    72   2e-11
CR954212_192(CR954212|pid:none) Ostreococcus tauri strain OTTH05...    71   3e-11
AY811506_1(AY811506|pid:none) Schistosoma japonicum clone SJCHGC...    69   9e-11
AK339864_1(AK339864|pid:none) Acyrthosiphon pisum ACYPI008820 mR...    69   2e-10
AY811527_1(AY811527|pid:none) Schistosoma japonicum clone SJCHGC...    66   1e-09
CP001574_554(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    65   2e-09
FN392321_1191(FN392321|pid:none) Pichia pastoris GS115 chromosom...    65   2e-09
Z81029_5(Z81029|pid:none) Caenorhabditis elegans Cosmid C01A2, c...    64   3e-09
CR382137_536(CR382137|pid:none) Debaryomyces hansenii strain CBS...    61   3e-08
AY814107_1(AY814107|pid:none) Schistosoma japonicum SJCHGC01479 ...    59   1e-07
FN315163_1(FN315163|pid:none) Schistosoma japonicum isolate Anhu...    59   1e-07
AM269949_13(AM269949|pid:none) Aspergillus niger contig An01c002...    57   4e-07
FN315164_1(FN315164|pid:none) Schistosoma japonicum isolate Anhu...    57   5e-07
FN320300_1(FN320300|pid:none) Schistosoma japonicum isolate Anhu...    57   5e-07
EU977074_1(EU977074|pid:none) Zea mays clone 998291 hypothetical...    48   3e-04
BC010000_1(BC010000|pid:none) Homo sapiens chromatin modifying p...    48   3e-04
T18795(T18795)hypothetical protein C01A2.4 - Caenorhabditis eleg...    47   6e-04
EU637017_24(EU637017|pid:none) Adineta vaga glycoprotein gene, p...    46   0.001
CR380958_67(CR380958|pid:none) Candida glabrata strain CBS138 ch...    45   0.002
FN320302_1(FN320302|pid:none) Schistosoma japonicum isolate Anhu...    44   0.003
(P36129) RecName: Full=Putative uncharacterized protein OPI8;  &...    44   0.004
BT075857_1(BT075857|pid:none) Caligus rogercresseyi clone crog-e...    44   0.005
(P36095) RecName: Full=Vacuolar protein-sorting-associated prote...    44   0.005
BT077464_1(BT077464|pid:none) Lepeophtheirus salmonis Pacific fo...    42   0.012
AX885468_1(AX885468|pid:none) Sequence 1331 from Patent EP1033401.     41   0.036
AX885470_1(AX885470|pid:none) Sequence 1333 from Patent EP1033401.     41   0.036
BT075788_1(BT075788|pid:none) Caligus rogercresseyi clone crog-e...    39   0.10
FN392319_331(FN392319|pid:none) Pichia pastoris GS115 chromosome...    38   0.30
CP001359_73(CP001359|pid:none) Anaeromyxobacter dehalogenans 2CP...    36   0.88
CP001131_63(CP001131|pid:none) Anaeromyxobacter sp. K, complete ...    36   0.88
AM295250_2201(AM295250|pid:none) Staphylococcus carnosus subsp. ...    36   0.88
CP000612_1015(CP000612|pid:none) Desulfotomaculum reducens MI-1,...    35   1.5
AE017356_184(AE017356|pid:none) Cryptococcus neoformans var. neo...    35   2.0
(Q6CJL0) RecName: Full=Vacuolar-sorting protein SNF7; AltName: F...    35   2.0
AF302466_2(AF302466|pid:none) Pasteurella multocida P1234 region...    34   3.3
FJ218593_1(FJ218593|pid:none) Drosophila melanogaster strain MW3...    34   3.3
CP000496_7(CP000496|pid:none) Pichia stipitis CBS 6054 chromosom...    34   3.3
CP000283_2721(CP000283|pid:none) Rhodopseudomonas palustris BisB...    34   3.3
FJ218599_1(FJ218599|pid:none) Drosophila melanogaster strain MW6...    34   3.3
FJ218580_1(FJ218580|pid:none) Drosophila melanogaster strain NC3...    34   4.3
AK300017_1(AK300017|pid:none) Homo sapiens cDNA FLJ59418 complet...    33   5.7
CP000377_1270(CP000377|pid:none) Silicibacter sp. TM1040, comple...    33   5.7
CP001110_2658(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    33   5.7
FJ218597_1(FJ218597|pid:none) Drosophila melanogaster strain MW5...    33   7.4
FJ218598_1(FJ218598|pid:none) Drosophila melanogaster strain MW6...    33   7.4
FJ218577_1(FJ218577|pid:none) Drosophila melanogaster strain MW2...    33   7.4
FJ218592_1(FJ218592|pid:none) Drosophila melanogaster strain NC3...    33   7.4
(Q09822) RecName: Full=Cell division control protein 15;  &CU329...    33   7.4
AY129432_1(AY129432|pid:none) Drosophila melanogaster GM04379 fu...    33   7.4
AE015927_1542(AE015927|pid:none) Clostridium tetani E88, complet...    33   7.4
AM270325_12(AM270325|pid:none) Aspergillus niger contig An14c018...    33   9.7

>(O96552) RecName: Full=Charged multivesicular body protein 1;
           AltName: Full=Vacuolar protein-sorting-associated
           protein 46; AltName: Full=Developmental gene 1118
           protein;  &AF081802_1(AF081802|pid:none)
          Length = 192

 Score =  312 bits (799), Expect = 6e-84
 Identities = 167/188 (88%), Positives = 167/188 (88%)
 Frame = +3

Query: 54  MENQLFQLKFTXXXXXXXXXXXXXXXXXXXXXLKKAIEQGNMDGARIYAQNAIREKNQSL 233
           MENQLFQLKFT                     LKKAIEQGNMDGARIYAQNAIREKNQSL
Sbjct: 1   MENQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSL 60

Query: 234 NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 413
           NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE
Sbjct: 61  NYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFE 120

Query: 414 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE 593
           DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE
Sbjct: 121 DLDVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGETDE 180

Query: 594 LTERLNRL 617
           LTERLNRL
Sbjct: 181 LTERLNRL 188

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 696,917,737
Number of extensions: 10899726
Number of successful extensions: 32751
Number of sequences better than 10.0: 137
Number of HSP's gapped: 32661
Number of HSP's successfully gapped: 137
Length of query: 217
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 94
Effective length of database: 659,166,577
Effective search space: 61961658238
Effective search space used: 61961658238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.66  gvh: 0.22  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.08
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U03777-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0