Contig-U00839-1 |
Contig ID |
Contig-U00839-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
136 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
3438619 |
End point |
3438483 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U00839 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.21 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.19 |
Homology vs DNA |
|
protein update |
2009. 7.14 |
Homology vs Protein |
Query= Contig-U00839-1 (Contig-U00839-1Q) /CSM_Contig/Contig-U00839-1Q.Seq.d (136 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AM477397_3(AM477397|pid:none) Vitis vinifera contig VV78X260201.... 41 0.011 (Q54KA7) RecName: Full=Ankyrin repeat, PH and SEC7 domain contai... 41 0.015 CP000849_474(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 40 0.019 T38792(T38792) probable protein transport protein sec7 homolog -... 39 0.043 AE014296_3669(AE014296|pid:none) Drosophila melanogaster chromos... 39 0.073 AY058333_1(AY058333|pid:none) Drosophila melanogaster GH10594 fu... 39 0.073 BT016033_1(BT016033|pid:none) Drosophila melanogaster RE02556 fu... 39 0.073 BT016080_1(BT016080|pid:none) Drosophila melanogaster LP01489 fu... 39 0.073 (Q9Y6D5) RecName: Full=Brefeldin A-inhibited guanine nucleotide-... 38 0.096 AY255526_1(AY255526|pid:none) Rattus norvegicus Brefeldin A-inhi... 38 0.096 AK302526_1(AK302526|pid:none) Homo sapiens cDNA FLJ55398 complet... 38 0.096 BT059417_1(BT059417|pid:none) Salmo salar clone ssal-rgf-541-375... 38 0.12 AB009054_21(AB009054|pid:none) Arabidopsis thaliana genomic DNA,... 38 0.12 AJ235271_145(AJ235271|pid:none) Rickettsia prowazekii strain Mad... 37 0.16 AM270122_6(AM270122|pid:none) Aspergillus niger contig An07c0040... 37 0.21 AE014134_3647(AE014134|pid:none) Drosophila melanogaster chromos... 37 0.28 AE014134_3648(AE014134|pid:none) Drosophila melanogaster chromos... 37 0.28 AE014134_2487(AE014134|pid:none) Drosophila melanogaster chromos... 37 0.28 AL606631_11(AL606631|pid:none) Oryza sativa genomic DNA, chromos... 37 0.28 AK109864_1(AK109864|pid:none) Oryza sativa Japonica Group cDNA c... 37 0.28 (Q15438) RecName: Full=Cytohesin-1; AltName: Full=PH, SEC7 and c... 37 0.28 AF125362_1(AF125362|pid:none) Homo sapiens cytohesin 1 gene, exo... 37 0.28 AE014134_2486(AE014134|pid:none) Drosophila melanogaster chromos... 37 0.28 AF125362_2(AF125362|pid:none) Homo sapiens cytohesin 1 gene, exo... 37 0.28 AM920435_164(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 37 0.28 AY574952_1(AY574952|pid:none) Danio rerio cytohesin 1-like prote... 36 0.36 BT075092_1(BT075092|pid:none) Osmerus mordax clone omor-eva-508-... 36 0.36 BC074395_1(BC074395|pid:none) Xenopus laevis MGC84366 protein, m... 36 0.36 BT059690_1(BT059690|pid:none) Salmo salar clone ssal-rgf-001-101... 36 0.36 AK158216_1(AK158216|pid:none) Mus musculus adult inner ear cDNA,... 36 0.36 BC059497_1(BC059497|pid:none) Danio rerio zgc:73134, mRNA (cDNA ... 36 0.36 AB013464_1(AB013464|pid:none) Mus musculus CLM1-A mRNA for cytoh... 36 0.36 BC026481_1(BC026481|pid:none) Mus musculus IQ motif and Sec7 dom... 36 0.47 AL139396_8(AL139396|pid:none) Human DNA sequence from clone RP11... 36 0.47 AP008208_1129(AP008208|pid:none) Oryza sativa (japonica cultivar... 36 0.47 B87990(B87990) protein Y6B3A.1 [imported] - Caenorhabditis elega... 36 0.47 BC155699_1(BC155699|pid:none) Xenopus tropicalis hypothetical pr... 36 0.47 EU194251_1(EU194251|pid:none) Sus scrofa cytohesin 2 mRNA, compl... 36 0.47 (Q2KI41) RecName: Full=Cytohesin-2; AltName: Full=PH, SEC7 and c... 36 0.47 AB013467_1(AB013467|pid:none) Mus musculus CLM2-A mRNA for cytoh... 36 0.47 AB209573_1(AB209573|pid:none) Homo sapiens mRNA for pleckstrin h... 36 0.47 (Q8R0S2) RecName: Full=IQ motif and SEC7 domain-containing prote... 36 0.47 AM461845_1(AM461845|pid:none) Vitis vinifera contig VV78X136107.... 36 0.47 AP008209_903(AP008209|pid:none) Oryza sativa (japonica cultivar-... 36 0.47 BX571960_5(BX571960|pid:none) Zebrafish DNA sequence from clone ... 36 0.47 AP004789_16(AP004789|pid:none) Oryza sativa Japonica Group genom... 36 0.47 AB275281_1(AB275281|pid:none) Mus musculus mRNA for ARF6 guanine... 36 0.47 CR382125_987(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 36 0.47 (Q5DU25) RecName: Full=IQ motif and SEC7 domain-containing prote... 36 0.47 BC010267_1(BC010267|pid:none) Homo sapiens IQ motif and Sec7 dom... 36 0.47 AB013469_2(AB013469|pid:none) Mus musculus CLM2 gene for cytohes... 36 0.47 AB018306_1(AB018306|pid:none) Homo sapiens mRNA for KIAA0763 pro... 36 0.47 (Q5JU85) RecName: Full=IQ motif and SEC7 domain-containing prote... 36 0.47 AB011094_1(AB011094|pid:none) Homo sapiens mRNA for KIAA0522 pro... 36 0.47 AB383981_1(AB383981|pid:none) Synthetic construct DNA, clone: pF... 36 0.47 AK095232_1(AK095232|pid:none) Homo sapiens cDNA FLJ37913 fis, cl... 36 0.47 U59752_1(U59752|pid:none) Human Sec7p-like protein mRNA, partial... 36 0.47 (O43739) RecName: Full=Cytohesin-3; AltName: Full=PH, SEC7 and c... 35 0.62 AK313728_1(AK313728|pid:none) Homo sapiens cDNA, FLJ94328, highl... 35 0.62 AM989984_65(AM989984|pid:none) Zygosaccharomyces rouxii strain C... 35 0.62 CP000053_585(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 35 0.62 BT021743_1(BT021743|pid:none) Bos taurus pleckstrin homology, Se... 35 0.62 AE017354_1911(AE017354|pid:none) Legionella pneumophila subsp. p... 35 0.62 CR382133_500(CR382133|pid:none) Debaryomyces hansenii strain CBS... 35 0.62 AK168566_1(AK168566|pid:none) Mus musculus 16 days embryo kidney... 35 0.62 (O08967) RecName: Full=Cytohesin-3; AltName: Full=PH, SEC7 and c... 35 0.62 AC004895_1(AC004895|pid:none) Homo sapiens PAC clone RP4-810E6 f... 35 0.62 BC125677_1(BC125677|pid:none) Xenopus tropicalis hypothetical pr... 35 0.62 AL022604_6(AL022604|pid:none) Arabidopsis thaliana DNA chromosom... 35 0.62 (Q80YW0) RecName: Full=Cytohesin-4; AltName: Full=PH, SEC7 and c... 35 0.81 AK304453_1(AK304453|pid:none) Homo sapiens cDNA FLJ54256 complet... 35 0.81 CT005271_254(CT005271|pid:none) Leishmania major strain Friedlin... 35 0.81 AP003539_28(AP003539|pid:none) Oryza sativa Japonica Group genom... 35 0.81 BC018505_1(BC018505|pid:none) Mus musculus cytohesin 4, mRNA (cD... 35 0.81 AK024428_1(AK024428|pid:none) Homo sapiens mRNA for FLJ00017 pro... 35 0.81 AK152306_1(AK152306|pid:none) Mus musculus bone marrow macrophag... 35 0.81 AK315052_1(AK315052|pid:none) Homo sapiens cDNA, FLJ96001, highl... 35 0.81 AP000366_16(AP000366|pid:none) Oryza sativa Japonica Group genom... 35 0.81 Z94160_8(Z94160|pid:none) Human DNA sequence from clone RP1-63G5... 35 0.81 (Q76M68) RecName: Full=IQ motif and SEC7 domain-containing prote... 35 1.1 CR533426_1(CR533426|pid:none) Paramecium tetraurelia, complete g... 35 1.1 CR954204_443(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 35 1.1 AB050522_1(AB050522|pid:none) Macaca fascicularis brain cDNA, cl... 35 1.1 CU928180_587(CU928180|pid:none) Kluyveromyces thermotolerans str... 35 1.1 AC115680_13(AC115680|pid:none) Dictyostelium discoideum chromoso... 35 1.1 AK122446_1(AK122446|pid:none) Mus musculus mRNA for mKIAA1110 pr... 35 1.1 AC079933_9(AC079933|pid:none) Trypanosoma brucei chromosome 4 cl... 35 1.1 CR954217_38(CR954217|pid:none) Ostreococcus tauri strain OTTH059... 35 1.1 AL928990_2(AL928990|pid:none) Zebrafish DNA sequence from clone ... 34 1.4 CP001330_76(CP001330|pid:none) Micromonas sp. RCC299 chromosome ... 34 1.4 AC020622_9(AC020622|pid:none) Sequence of BAC F22M8 from Arabido... 34 1.4 CR954210_109(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 34 1.4 (P39993) RecName: Full=ARF guanine-nucleotide exchange factor 2;... 34 1.4 AL035538_32(AL035538|pid:none) Arabidopsis thaliana DNA chromoso... 34 1.4 (P47102) RecName: Full=ARF guanine-nucleotide exchange factor 1;... 34 1.8 AY144827_1(AY144827|pid:none) Saccharomyces bayanus clone Contig... 34 1.8 CU638743_43(CU638743|pid:none) Podospora anserina genomic DNA ch... 34 1.8 AE016820_224(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 34 1.8 AP007151_372(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 34 1.8 CU928170_387(CU928170|pid:none) Kluyveromyces thermotolerans str... 34 1.8 AE017344_239(AE017344|pid:none) Cryptococcus neoformans var. neo... 34 1.8 CP000502_112(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 34 1.8 CR533425_1(CR533425|pid:none) Paramecium tetraurelia, complete g... 33 2.4 FM992690_450(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 2.4 AK155320_1(AK155320|pid:none) Mus musculus NOD-derived CD11c +ve... 33 3.1 CR533427_1(CR533427|pid:none) Paramecium tetraurelia, complete g... 33 3.1 AK220345_1(AK220345|pid:none) Mus musculus mRNA for mKIAA0522 pr... 33 4.0 AY144825_1(AY144825|pid:none) Saccharomyces bayanus clone Contig... 33 4.0 CR940353_800(CR940353|pid:none) Theileria annulata strain Ankara... 33 4.0 CR628337_1929(CR628337|pid:none) Legionella pneumophila str. Len... 33 4.0 FJ168554_1(FJ168554|pid:none) Bodo saltans clone fosmid 5M18, co... 32 5.2 CR380951_26(CR380951|pid:none) Candida glabrata strain CBS138 ch... 32 5.2 J03918_1(J03918|pid:none) Yeast (S.cerevisaie) Sec7 gene encodin... 32 5.2 AM494957_195(AM494957|pid:none) Leishmania braziliensis chromoso... 32 6.9 CP000596_44(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 ... 32 9.0
>AM477397_3(AM477397|pid:none) Vitis vinifera contig VV78X260201.39, whole genome shotgun sequence. Length = 1366
Score = 41.2 bits (95), Expect = 0.011 Identities = 19/44 (43%), Positives = 30/44 (68%) Frame = +1
Query: 4 FRLVGEAQKVDRLMEVFSKKYFDDNDATESGGTNIXVNKDSVFI 135 FRL GE+QK+ R++E FS++++D + I V+KD+VFI Sbjct: 570 FRLPGESQKIQRILEAFSERFYDQQ------SSEIFVSKDAVFI 607
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 190,823,846 Number of extensions: 2757402 Number of successful extensions: 7713 Number of sequences better than 10.0: 115 Number of HSP's gapped: 7713 Number of HSP's successfully gapped: 115 Length of query: 45 Length of database: 1,051,180,864 Length adjustment: 19 Effective length of query: 26 Effective length of database: 989,686,243 Effective search space: 25731842318 Effective search space used: 25731842318 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 25 (14.2 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |