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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03721-1
Contig ID Contig-U03721-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U03721-1 (Contig-U03721-1Q) /CSM_Contig/Contig-U03721-1Q.Seq.d
ATTTATTTTTTTGTAAAATATATAAATACATACAAAAAAAAGAAAAAAAA
ATTCCCCCCCNTTNAANNTTTTTTTNTNTTTGGAAAAAANNTTTNTTTTT
AAAAAAAAA
Gap no gap
Contig length 109
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U03721
List of clone(s) 

est1=SFK413F,1,110
Translated Amino Acid sequence 
LFFCKIYKYIQKKEKKIPPXXXFFXXWKKXXFLKK
Translated Amino Acid sequence (All Frames) 
Frame A:
iyffvkyintykkkkkkfppxxxffxfgkxxxf*kk


Frame B:
fifl*ni*ihtkkrkknsppxxxfxxlekxfxfkkk


Frame C:
LFFCKIYKYIQKKEKKIPPXXXFFXXWKKXXFLKK
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03721-1 (Contig-U03721-1Q)
/CSM_Contig/Contig-U03721-1Q.Seq.d
         (109 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03721-1 (Contig-U03721-1Q) /CSM_Contig/Conti...    66  8e-12
Contig-U14725-1 (Contig-U14725-1Q) /CSM_Contig/Conti...    36  0.007
Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Conti...    34  0.027
Contig-U03509-1 (Contig-U03509-1Q) /CSM_Contig/Conti...    34  0.027
Contig-U01385-1 (Contig-U01385-1Q) /CSM_Contig/Conti...    34  0.027
Contig-U13601-1 (Contig-U13601-1Q) /CSM_Contig/Conti...    32  0.11
Contig-U04680-1 (Contig-U04680-1Q) /CSM_Contig/Conti...    32  0.11
Contig-U02050-1 (Contig-U02050-1Q) /CSM_Contig/Conti...    32  0.11
Contig-U14680-1 (Contig-U14680-1Q) /CSM_Contig/Conti...    30  0.42
Contig-U01813-1 (Contig-U01813-1Q) /CSM_Contig/Conti...    26  6.6

>Contig-U03721-1 (Contig-U03721-1Q) /CSM_Contig/Contig-U03721-1Q.Seq.d
          Length = 109

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 1  atttatttttttgtaaaatatataaatacatac 33
          |||||||||||||||||||||||||||||||||
Sbjct: 1  atttatttttttgtaaaatatataaatacatac 33


>Contig-U14725-1 (Contig-U14725-1Q) /CSM_Contig/Contig-U14725-1Q.Seq.d
          Length = 769

 Score = 36.2 bits (18), Expect = 0.007
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                    
Query: 2  tttatttttttgtaaaatatataaat 27
          ||||||||||| | ||||||||||||
Sbjct: 44 tttattttttttttaaatatataaat 69


>Contig-U09581-1 (Contig-U09581-1Q) /CSM_Contig/Contig-U09581-1Q.Seq.d
          Length = 1245

 Score = 34.2 bits (17), Expect = 0.027
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 11  ttgtaaaatatataaat 27
           |||||||||||||||||
Sbjct: 491 ttgtaaaatatataaat 507


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4378
Number of Sequences: 6905
Number of extensions: 4378
Number of successful extensions: 1061
Number of sequences better than 10.0: 285
length of query: 109
length of database: 5,674,871
effective HSP length: 14
effective length of query: 95
effective length of database: 5,578,201
effective search space: 529929095
effective search space used: 529929095
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2009. 6. 6
Homology vs DNA 
Query= Contig-U03721-1 (Contig-U03721-1Q) /CSM_Contig/Contig-U03721-1Q.Seq.d
         (109 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390085) Dictyostelium discoideum cDNA clone:dds21j04, 5' ...    66   2e-07  1
(AF238873) Homo sapiens clone GLSH-6 similar to gliadin gene...    50   0.015  1
(AC093227) Homo sapiens chromosome 19 clone CTD-2528L19, com...    50   0.015  1
(AC007676) Homo sapiens, clone RP11-9B17, complete sequence.       50   0.015  1
(AC141841) Apis mellifera clone CH224-4A4, WORKING DRAFT SEQ...    48   0.059  1
(ET077561) QM0AAB5BF01FM1 CCER1 Citrus clementina genomic cl...    48   0.059  1
(AC146485) Xenopus (Silurana) tropicalis clone CH216-8M11, c...    32   0.14   2
(EF085645) Picea sitchensis clone WS02710_M02 unknown mRNA.        46   0.23   1
(AC149650) Bos taurus clone CH240-68J23, WORKING DRAFT SEQUE...    46   0.23   1
(AC218722) Bos taurus clone CH240-296K10, WORKING DRAFT SEQU...    46   0.23   1
(FI126872) MUGQ_CH252P504E13T7_CH0223_059 CHORI-252 Vervet M...    46   0.23   1
(ET952132) CHO_OF557xj24f1.ab1 CHO_OF Nicotiana tabacum geno...    46   0.23   1
(ET211606) MUGQ_CH252P412F03Sp6_CP787_012 CHORI-252 Vervet M...    46   0.23   1
(BZ483006) BONNO30TF BO_1.6_2_KB_tot Brassica oleracea genom...    46   0.23   1
(DR580186) WS00754.C21_B04 WS-PS-N-A-8 Picea glauca cDNA clo...    46   0.23   1
(DR538403) WS0276.B21_N16 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR538398) WS0276.B21_N11 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR534096) WS02742.C21_F05 SS-IL-A-FL-14 Picea sitchensis cD...    46   0.23   1
(DR532151) WS02737.C21_I11 SS-IL-A-FL-14 Picea sitchensis cD...    46   0.23   1
(DR529042) WS02729.C21_H14 SS-IL-A-FL-14 Picea sitchensis cD...    46   0.23   1
(DR522080) WS02710.C21_M02 SS-IL-A-FL-14 Picea sitchensis cD...    46   0.23   1
(DR521878) WS02710.C21_D04 SS-IL-A-FL-14 Picea sitchensis cD...    46   0.23   1
(DR520374) WS0276.BR_N16 SS-IL-A-FL-14 Picea sitchensis cDNA...    46   0.23   1
(DR520369) WS0276.BR_N11 SS-IL-A-FL-14 Picea sitchensis cDNA...    46   0.23   1
(DR516046) WS02742.CR_F05 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR513979) WS02737.CR_I11 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR510813) WS02729.CR_H14 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR504381) WS02710.CR_M02 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(DR504204) WS02710.CR_D04 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(CO230007) WS00110.B21_K04 WS-ES-A-1 Picea glauca cDNA clone...    46   0.23   1
(CA997664) rf99g06.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(CA997437) rg17b05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(CA997350) rg15e02.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(CA996765) rg02h01.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BU095235) rf63g06.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BU094820) rf54f03.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BU094585) rf70d09.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BU094393) rf68a03.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BQ837717) rf29h06.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   0.23   1
(BM952108) rc55d05.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM901886) rc49g11.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM901550) rc46b04.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM901549) rc46b03.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM901316) rc27e08.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM901291) rc27c06.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM900506) rc38d07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    46   0.23   1
(BM891264) sam24h08.y1 Gm-c1068 Glycine max cDNA clone SOYBE...    46   0.23   1
(BI426607) sag05c10.y1 Gm-c1080 Glycine max cDNA clone GENOM...    46   0.23   1
(FF448114) G178P60094RG4.T0 Acorn worm gastrula/neurula pCMV...    46   0.23   1
(FD732341) WS03817.C21.1_H07 SS-B-23 Picea sitchensis cDNA c...    46   0.23   1
(ES865960) WS02793.CR_P19 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(ES865626) WS02793.CR_A22 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(ES865453) WS02792.CR_J11 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(ES856849) WS02770.CR_C10 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(ES854251) WS02761.CR_E13 SS-IL-A-FL-14 Picea sitchensis cDN...    46   0.23   1
(CR753862) Zebrafish DNA sequence from clone DKEY-165L22 in ...    42   0.24   2
(AM480294) Vitis vinifera, whole genome shotgun sequence, co...    40   0.41   2
(AC010199) Homo sapiens clone RP11-587P7, WORKING DRAFT SEQU...    36   0.50   2
(AL731555) Human DNA sequence from clone RP11-157J13 on chro...    36   0.50   2
(AC087586) Homo sapiens chromosome 12 clone RP11-544L1, WORK...    36   0.52   2
(EU221639) Agrostemma githago ribosomal protein S4 (rps4) ge...    32   0.61   2
(CU151884) Zebrafish DNA sequence from clone CH211-196H1.          44   0.92   1
(CU138537) Zebrafish DNA sequence from clone DKEY-126N10.          44   0.92   1
(BX511129) Zebrafish DNA sequence from clone RP71-68N21 in l...    44   0.92   1
(AL035475) Plasmodium falciparum MAL4P2.                           44   0.92   1
(CT027983) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.92   1
(AC199814) Zea mays chromosome 10 clone CH201-141J16; ZMMBBc...    44   0.92   1
(AC193389) Zea mays chromosome 10 clone ZMMBBb-511E22; ZMMBB...    44   0.92   1
(EK392367) 1095469506708 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.92   1
(ED674862) GM_WBb0005A19.r GM_WBb Glycine max genomic clone ...    44   0.92   1
(EE143825) SiJWH05BDB2 Lausanne fire ant library Solenopsis ...    44   0.92   1
(EE136523) SiJWB12BAB Lausanne fire ant library Solenopsis i...    44   0.92   1
(AM986291) Dicentrarchus labrax EST, 5'-end sequence, clone ...    44   0.92   1
(CV699203) SJS_043_71.T7 SJS Schistosoma japonicum cDNA, mRN...    44   0.92   1
(CV697957) SJS_035_06.T7 SJS Schistosoma japonicum cDNA, mRN...    44   0.92   1
(CV694830) SJS_015_25.T7 SJS Schistosoma japonicum cDNA, mRN...    44   0.92   1
(BU725470) SJMCEE02 SJM Schistosoma japonicum cDNA, mRNA seq...    44   0.92   1
(BU094885) rf55d06.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    44   0.92   1
(EX398147) GQ03412.B7_E04 GQ034 - Needles - Mid-season Picea...    44   0.92   1
(BX784029) Zebrafish DNA sequence from clone DKEY-21H14 in l...    42   0.95   2
(BX640463) Zebrafish DNA sequence from clone DKEY-29P10 in l...    32   1.8    2
(AC114748) Homo sapiens BAC clone RP11-164A18 from 2, comple...    34   1.9    2
(AC074000) Homo sapiens BAC clone CTD-2023N18 from 7, comple...    38   2.3    2
(AC233452) Solanum tuberosum chromosome 1 clone RH089J24, **...    40   2.4    2
(W32102) zb97a04.r1 Soares_parathyroid_tumor_NbHPA Homo sapi...    34   2.5    2
(AC187379) Pan troglodytes BAC clone CH251-371A19 from chrom...    38   2.6    2
(CU929729) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.9    2
(AC145868) Pan troglodytes BAC clone RP43-39F11 from chromos...    38   3.3    2
(EH118964) Plt-16-M13R_H06_48 MS EST Hem Manduca sexta cDNA,...    36   3.6    2
(CU929113) Zebrafish DNA sequence from clone ZFOS-254H3 in l...    42   3.6    1
(CR925792) Zebrafish DNA sequence from clone DKEY-255G15 in ...    42   3.6    1
(CR847533) Zebrafish DNA sequence from clone DKEY-15G24 in l...    42   3.6    1
(BX511003) Zebrafish DNA sequence from clone CH211-69F16 in ...    42   3.6    1
(BC115313) Danio rerio zgc:136889, mRNA (cDNA clone MGC:1368...    42   3.6    1
(AL954666) Zebrafish DNA sequence from clone CH211-81I19 in ...    42   3.6    1
(AM444510) Vitis vinifera contig VV78X046250.16, whole genom...    42   3.6    1
(AL161505) Arabidopsis thaliana DNA chromosome 4, contig fra...    42   3.6    1
(AL138639) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    42   3.6    1
(AF147262) Arabidopsis thaliana BAC F28D6.                         42   3.6    1
(AC186643) Medicago truncatula chromosome 2 BAC clone mth2-5...    42   3.6    1
(AC173287) Medicago truncatula chromosome 2 BAC clone mte1-5...    42   3.6    1
(AC149426) Populus trichocarpa clone Pop1-053A03, complete s...    42   3.6    1
(AC149425) Populus trichocarpa clone Pop1-041F22, complete s...    42   3.6    1
(AC149424) Populus trichocarpa clone Pop1-011N15, complete s...    42   3.6    1
(AC149295) Populus trichocarpa clone Pop1-008L01, complete s...    42   3.6    1
(AC146756) Medicago truncatula clone mth2-15l17, complete se...    42   3.6    1
(AB024033) Arabidopsis thaliana genomic DNA, chromosome 3, P...    42   3.6    1
(DD000866) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH...    42   3.6    1
(AX059551) Sequence 284 from Patent WO0055325.                     42   3.6    1
(AR777057) Sequence 212 from patent US 6972197.                    42   3.6    1
(M63845) Hyalophora cecropia cecropin A gene, complete cds.        42   3.6    1
(M63844) Hyalophora cecropia transposon mariner-like preproc...    42   3.6    1
(AC161998) Bos taurus clone CH240-108H5, WORKING DRAFT SEQUE...    42   3.6    1
(AC137260) Rattus norvegicus clone CH230-unknown, WORKING DR...    42   3.6    1
(AC136553) Rattus norvegicus clone CH230-146A4, WORKING DRAF...    42   3.6    1
(AC113644) Rattus norvegicus clone CH230-36H3, *** SEQUENCIN...    42   3.6    1
(AC111521) Rattus norvegicus clone CH230-143E8, *** SEQUENCI...    42   3.6    1
(AC110467) Rattus norvegicus clone CH230-320D17, *** SEQUENC...    42   3.6    1
(CU856382) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.6    1
(CU406958) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.6    1
(CT573281) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   3.6    1
(AC232570) Brassica rapa subsp. pekinensis clone KBrH129I15,...    42   3.6    1
(AC232474) Brassica rapa subsp. pekinensis clone KBrB027P21,...    42   3.6    1
(AC219888) Bos taurus clone CH240-319G7, WORKING DRAFT SEQUE...    42   3.6    1
(AC217757) Procavia capensis clone CH280-123J13, WORKING DRA...    42   3.6    1
(AC209810) Zea mays chromosome 3 clone CH201-251A12; ZMMBBc0...    42   3.6    1
(AC189612) Brassica rapa subsp. pekinensis clone KBrH070D09,...    42   3.6    1
(AC179476) Strongylocentrotus purpuratus clone R3-63L7, WORK...    42   3.6    1
(AC179457) Strongylocentrotus purpuratus clone R3-63G17, WOR...    42   3.6    1
(AC176559) Strongylocentrotus purpuratus clone R3-3076H3, WO...    42   3.6    1
(AC168394) Strongylocentrotus purpuratus clone R3-4002N21, W...    42   3.6    1
(AC168097) Bos taurus clone CH240-209P15, WORKING DRAFT SEQU...    42   3.6    1
(FI031544) CHO_OF6945xl14r1.ab1 CHO_OF6 Nicotiana tabacum ge...    42   3.6    1
(FH174355) CHO_OF3397xb09f1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   3.6    1
(EJ432555) 1093015263862 Global-Ocean-Sampling_GS-28-01-01-1...    42   3.6    1
(EJ341205) 1092963517464 Global-Ocean-Sampling_GS-28-01-01-1...    42   3.6    1
(DX030393) KBrB026O07R KBrB, Brassica rapa BamHI BAC library...    42   3.6    1
(DE571656) Bombyx mori genomic DNA, Fosmid clone:GBMFno217_b...    42   3.6    1
(CE201355) tigr-gss-dog-17000372229792 Dog Library Canis lup...    42   3.6    1
(CC704637) OG0EB54TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   3.6    1
(BZ170325) CH230-320D17.TV CHORI-230 Segment 2 Rattus norveg...    42   3.6    1
(BX164730) Danio rerio genomic clone DKEY-155G1, genomic sur...    42   3.6    1
(BH954275) odi84e07.g1 B.oleracea002 Brassica oleracea genom...    42   3.6    1
(ES371556) Tra_Embryo_3-1_G09 Guppy pDNR_LIB Tranquille Embr...    42   3.6    1
(EL915716) INIT2_94_D04.g2_A006 G5 trophont cDNA (INIT2) Ich...    42   3.6    1
(EC276543) AGENCOURT_81585555 NICHD_XGC_limb_m Xenopus laevi...    42   3.6    1
(CN585994) USDA-FP_129066 Acyrthosiphon pisum, Pea Aphid Acy...    42   3.6    1
(GE450221) 294586518 Nasonia vitripennis Adult Female Nasoni...    42   3.6    1
(GE376700) 292317249 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(GE373126) 292308623 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(GE362978) 292286492 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(GE356444) 292265799 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(GE354563) 289182124 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(GE353428) 289165400 Nasonia vitripennis Male Pupae Nasonia ...    42   3.6    1
(FG542739) NADI-aaa55c03.b1 Rhodnius_prolixus_EST_NADI_5th_i...    42   3.6    1
(FG316679) gmnlem_0018j20.sp6 Gadus morhua embryo library Ga...    42   3.6    1
(FF639501) G825P59FG6.T0 Acorn worm normalized gastrula pExp...    42   3.6    1
(EX473113) NADI-aaa17h07.b1 Rhodnius_prolixus_EST_NADI_5th_i...    42   3.6    1
(EX472902) NADI-aaa17h07.g1 Rhodnius_prolixus_EST_NADI_5th_i...    42   3.6    1
(EW769356) ST020024B20H01 Normalized and subtracted western ...    42   3.6    1
(EV383678) EST_oner_rge_734721 onerrge mixed_tissue Oncorhyn...    42   3.6    1
(AW280190) fj52b11.x1 zebrafish adult brain Danio rerio cDNA...    42   3.6    1
(AB093146) Neocalanus tonsus mitochondrial srRNA, ND6, COI, ...    38   4.9    2
(AC009797) Homo sapiens chromosome 11 clone 216_I_08 map 11,...    34   5.2    2
(CU104677) CH251-551O18, complete sequence.                        32   6.6    2
(AC068210) Homo sapiens chromosome 4 clone RP11-392C23 map 4...    32   6.7    2
(AL953904) Zebrafish DNA sequence from clone CH211-266I6.          32   6.7    2
(AL591378) Human DNA sequence from clone RP11-64P15 on chrom...    32   6.7    2
(AC021598) Homo sapiens clone RP11-184D4, WORKING DRAFT SEQU...    32   6.7    2
(AC189204) Brassica rapa subsp. pekinensis clone KBrB006J12,...    32   6.7    2
(AL672263) Mouse DNA sequence from clone RP23-479M21 on chro...    32   6.8    2
(AC068334) Homo sapiens chromosome 4 clone RP11-317G10 map 4...    32   6.8    2
(AC172191) Spermophilus tridecemlineatus, clone XX-28677057F...    32   7.4    2
(AM438538) Vitis vinifera, whole genome shotgun sequence, co...    32   7.4    2
(EL500255) 018_PFLAB1-M-P27B.AB1 Blood stage Plasmodium falc...    36   7.6    2
(CU915533) Zebrafish DNA sequence from clone CH1073-297J22 i...    32   7.6    2
(BI814919) PfESToaa08a05.y1 Plasmodium falciparum 3D7 asexua...    36   8.2    2
(AP005716) Homo sapiens genomic DNA, chromosome 8q23, clone:...    34   9.1    2
(BX470221) Zebrafish DNA sequence from clone CH211-86K6 in l...    34   9.3    2
(AC068413) Homo sapiens chromosome 8, clone RP11-273I9, comp...    34   9.4    2
(FP102016) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   9.4    2
(EF142858) Plasmodium reichenowi reticulocyte binding-like p...    32   9.4    2
(CT019606) KBrH126E24 genomic clone, KBrH (HindIII) BAC libr...    32   9.5    2
(EY124972) NADL-aaa18a05.b1 Rhodnius_prolixus_EST_NADL_RpcDN...    30   9.6    2
(BX321879) Zebrafish DNA sequence from clone CH211-147M4 in ...    38   9.7    2
(AL929522) Zebrafish DNA sequence from clone CH211-157B19 in...    40   9.8    2
(ES086454) 114818_2217_1719 Arabidopsis ovule high throughpu...    30   9.8    2

>(BJ390085) Dictyostelium discoideum cDNA clone:dds21j04, 5' end,
          single read.
          Length = 110

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 33/33 (100%)
 Strand = Plus / Plus


Query: 1  atttatttttttgtaaaatatataaatacatac 33
          |||||||||||||||||||||||||||||||||
Sbjct: 1  atttatttttttgtaaaatatataaatacatac 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 107,841,190
Number of extensions: 11301424
Number of successful extensions: 3554160
Number of sequences better than 10.0: 190
Length of query: 109
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 87
Effective length of database: 99,544,435,898
Effective search space: 8660365923126
Effective search space used: 8660365923126
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03721-1 (Contig-U03721-1Q) /CSM_Contig/Contig-U03721-1Q.Seq.d
         (109 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 101,871,612
Number of extensions: 2471005
Number of successful extensions: 1182
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 0
Length of query: 36
Length of database: 1,061,185,681
Length adjustment: 10
Effective length of query: 26
Effective length of database: 1,028,501,201
Effective search space: 26741031226
Effective search space used: 26741031226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)
PSORT 

 psg: 0.29  gvh: 0.30  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U03721-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0