Contig-U03720-1
Contig ID Contig-U03720-1
Contig update 2002. 9.13
Contig sequence
>Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Contig-U03720-1Q.Seq.d
TTTTTTTTTTTTTACTTGTTAATTTGAATTTTATTTATTTTTATTTTTGT
TTTTATTTTTATTTTTATTTTTATTTTTATTTAATTTTTTTTTTTTTTTT
TTCTTATTTTTAATATTACAATTTAAAAAATATACCCATCCATATCTTCA
TAACTTAAAAAATTATTTTCTTGTTCTTCTTTTTCTTCTTTTTCTTCTTC
TTCTTCTTTTTGAGAATTAATTAAAATATTTTTAAAAAACCAATCAATTT
TATAATATTCCCAAGGATCATCTTGTTCAGTATTTTTACTTGGTTTTTGA
TAATTGATATTTGGGAAAACATTATACACAAAAAATAAGAAATTTGAAGT
TTTTGAAATTGTTGGTAATATAACTTCAAATGATTGATCTTTATCAAGTT
CAAGTTCTAATGCTAAATCATATCTAAGATAATTAAATACTTCCAAACAA
CCAGTTTCCAATGCACAATATAACCATACTGATTGAGGTTTTTCATCATC
ATCATCATCTAAACCTGTACCTATACCACCACCACTACTTGAACGTTTAA
GTTTAAAAATTTGAGGATACTTTTCATGAATTAATTTAATTGCAGGTAAA
TGTGAACCTTTAATCAACTCATTAATTATAAATATAATAATCTTTTCTGT
TGTTAAAATTTTAAGATTACAACTACTATTACTACCACCACCACCACTAC
TAAATTGATTTAAAAGTAATTCTAATAATCCTAAAATGAAATCCATTGGG
GCAATTCTAAATTCT

Gap no gap
Contig length 765
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 222715
End point 221949
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U03720
List of clone(s)

est1=SSA450F,1,354
est2=SFK385F,113,767
Translated Amino Acid sequence
fffftc*FEFYLFLFLFLFLFLFLFLFNFFFFFFLFLILQFKKYTHPYLHNLKNYFLVLL
FLLFLLLLLFEN*lkyf*ktnqfynipkdhlvqyfylvfdn*ylgkhytqkirnlkflkl
lvi*lqmidlyqvqvlmlnhi*dn*ilpnnqfpmhnitilievfhhhhhlnlylyhhhyl
nv*v*kfedtfheli*lqvnvnl*sth*l*i**sflllkf*dynyyyyhhhhy*idlkvi
liilk*nplgqf*i


Translated Amino Acid sequence (All Frames)
Frame A:
ffffylli*ilfififvfififififi*fffffflifniti*kiypsiss*lkklfscss
fssfsssssf*elikiflknqsil*ysqgsscsvfllgf**lifgktlytknkkfevfei
vgnitsnd*slsssssnaksylr*lntskqpvsnaqynhtd*gfsssssskpvpipppll
erlslki*gyfs*inliagkceplinsliiniiifsvvkilrlqllllpppplln*fksn
snnpkmksigailns


Frame B:
fffftc*FEFYLFLFLFLFLFLFLFLFNFFFFFFLFLILQFKKYTHPYLHNLKNYFLVLL
FLLFLLLLLFEN*lkyf*ktnqfynipkdhlvqyfylvfdn*ylgkhytqkirnlkflkl
lvi*lqmidlyqvqvlmlnhi*dn*ilpnnqfpmhnitilievfhhhhhlnlylyhhhyl
nv*v*kfedtfheli*lqvnvnl*sth*l*i**sflllkf*dynyyyyhhhhy*idlkvi
liilk*nplgqf*i


Frame C:
fffllvnlnfiyfyfcfyfyfyfyfylifffffsyf*yynlknipihifit*kiiflfff
ffffffffflrin*nifkkpinfiifpriilfsiftwfliidiweniihkk*ei*sf*nc
w*ynfk*lifikfkf*c*iiskiikyfqttsfqcti*py*lrffiiiii*tctyttttt*
tfkfknlrilfmn*fncr*m*tfnqlinykynnlfcc*nfkitttitttttttkli*k*f
**s*neihwgnskf


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03720-1 (Contig-U03720-1Q)
/CSM_Contig/Contig-U03720-1Q.Seq.d
(765 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Conti... 557 e-159
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti... 52 9e-07
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti... 50 4e-06
Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Conti... 50 4e-06
Contig-U12502-1 (Contig-U12502-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U03798-1 (Contig-U03798-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti... 42 9e-04
Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti... 42 9e-04

>Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Contig-U03720-1Q.Seq.d
Length = 765

Score = 557 bits (281), Expect = e-159
Identities = 281/281 (100%)
Strand = Plus / Plus


Query: 212 gagaattaattaaaatatttttaaaaaaccaatcaattttataatattcccaaggatcat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gagaattaattaaaatatttttaaaaaaccaatcaattttataatattcccaaggatcat 271


Query: 272 cttgttcagtatttttacttggtttttgataattgatatttgggaaaacattatacacaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttgttcagtatttttacttggtttttgataattgatatttgggaaaacattatacacaa 331


Query: 332 aaaataagaaatttgaagtttttgaaattgttggtaatataacttcaaatgattgatctt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaataagaaatttgaagtttttgaaattgttggtaatataacttcaaatgattgatctt 391


Query: 392 tatcaagttcaagttctaatgctaaatcatatctaagataattaaatacttccaaacaac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tatcaagttcaagttctaatgctaaatcatatctaagataattaaatacttccaaacaac 451


Query: 452 cagtttccaatgcacaatataaccatactgattgaggtttt 492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cagtttccaatgcacaatataaccatactgattgaggtttt 492


Score = 507 bits (256), Expect = e-144
Identities = 256/256 (100%)
Strand = Plus / Plus


Query: 510 taaacctgtacctataccaccaccactacttgaacgtttaagtttaaaaatttgaggata 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taaacctgtacctataccaccaccactacttgaacgtttaagtttaaaaatttgaggata 569


Query: 570 cttttcatgaattaatttaattgcaggtaaatgtgaacctttaatcaactcattaattat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cttttcatgaattaatttaattgcaggtaaatgtgaacctttaatcaactcattaattat 629


Query: 630 aaatataataatcttttctgttgttaaaattttaagattacaactactattactaccacc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaatataataatcttttctgttgttaaaattttaagattacaactactattactaccacc 689


Query: 690 accaccactactaaattgatttaaaagtaattctaataatcctaaaatgaaatccattgg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 accaccactactaaattgatttaaaagtaattctaataatcctaaaatgaaatccattgg 749


Query: 750 ggcaattctaaattct 765
||||||||||||||||
Sbjct: 750 ggcaattctaaattct 765


Score = 107 bits (54), Expect = 2e-23
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 112 aatattacaatttaaaaaatatacccatccatatcttcataacttaaaaaatta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aatattacaatttaaaaaatatacccatccatatcttcataacttaaaaaatta 165


>Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Contig-U00078-1Q.Seq.d
Length = 1340

Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Plus


Query: 672 actactattactaccaccaccaccactactaaat 705
||||||| ||||||||||||||||||||| ||||
Sbjct: 806 actactactactaccaccaccaccactacaaaat 839


Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 680 tactaccaccaccaccactactaa 703
|||||||||||||||||| |||||
Sbjct: 726 tactaccaccaccaccaccactaa 749


Score = 34.2 bits (17), Expect = 0.21
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 675 actattactaccaccaccaccacta 699
|||| ||| ||||||||||||||||
Sbjct: 724 actactaccaccaccaccaccacta 748


Score = 34.2 bits (17), Expect = 0.21
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 674 tactattactaccaccaccaccactacta 702
||||| |||||| ||||||||||| ||||
Sbjct: 805 tactactactactaccaccaccaccacta 833


>Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Contig-U12467-1Q.Seq.d
Length = 1279

Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus


Query: 674 tactattactaccaccaccaccactacta 702
|||||||||||| ||||||||||||||||
Sbjct: 818 tactattactactaccaccaccactacta 790


Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 672 actactattactaccac 688
|||||||||||||||||
Sbjct: 796 actactattactaccac 780


Score = 32.2 bits (16), Expect = 0.84
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 524 taccaccaccactact 539
||||||||||||||||
Sbjct: 806 taccaccaccactact 791


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,527
Number of Sequences: 6905
Number of extensions: 19527
Number of successful extensions: 3010
Number of sequences better than 10.0: 413
length of query: 765
length of database: 5,674,871
effective HSP length: 16
effective length of query: 749
effective length of database: 5,564,391
effective search space: 4167728859
effective search space used: 4167728859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 6
Homology vs DNA
Query= Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Contig-U03720-1Q.Seq.d
(765 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ... 557 0.0 3
(BJ390288) Dictyostelium discoideum cDNA clone:dds21j21, 5' ... 557 0.0 3
(AU072642) Dictyostelium discoideum slug cDNA, clone SSA450. 281 5e-95 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 9e-06 14
(GC700729) Sequence 15974 from patent US 6812339. 50 1e-04 2
(AC011357) Homo sapiens chromosome 5 clone CTC-362D12, compl... 50 1e-04 2
(CZ463797) MCF754h19TR Human MCF7 breast cancer cell line li... 50 1e-04 2
(FD834577) CBGZ35483.fwd CBGZ Volvox carteri f. nagariensis ... 60 1e-04 1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 46 2e-04 9
(DH495703) Monosiga ovata DNA, fosmid clone: MOF-059O17, gen... 50 2e-04 2
(AQ155933) HS_3197_B1_D10_T7 CIT Approved Human Genomic Sper... 54 3e-04 2
(DH479879) Monosiga ovata DNA, fosmid clone: MOF-032E11, gen... 52 4e-04 2
(AC096253) Rattus norvegicus clone CH230-88E1, *** SEQUENCIN... 54 4e-04 2
(AP009662) Lotus japonicus genomic DNA, chromosome 2, clone:... 58 5e-04 1
(AF006483) Phaffia rhodozyma glyceraldehyde-3-phosphate dehy... 58 5e-04 1
(FD827518) CBGZ25264.rev CBGZ Volvox carteri f. nagariensis ... 58 5e-04 1
(DH505345) Monosiga ovata DNA, fosmid clone: MOF-076G19, gen... 46 6e-04 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 46 6e-04 14
(EF069401) Batrachochytrium dendrobatidis strain JP005 varia... 48 8e-04 2
(DE863075) Macropus eugenii DNA, BAC clone: MEB1-030F15_R, 3... 46 8e-04 3
(AC006705) Caenorhabditis elegans clone Y108G3c, *** SEQUENC... 38 0.001 9
(DH489849) Monosiga ovata DNA, fosmid clone: MOF-049G18, gen... 50 0.001 2
(AC099369) Rattus norvegicus clone CH230-99L16, WORKING DRAF... 50 0.001 2
(AC184611) Strongylocentrotus purpuratus clone R3-3085G2, WO... 46 0.002 2
(EY297425) CAWX13358.fwd CAWX Helobdella robusta Primary Ear... 48 0.002 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.002 16
(AR547026) Sequence 2157 from patent US 6747137. 56 0.002 1
(AC110402) Rattus norvegicus clone CH230-44K24, *** SEQUENCI... 56 0.002 1
(GE802111) EST_scau_evk_892976 scauevk mixed_tissue Sebastes... 46 0.003 2
(BJ342956) Dictyostelium discoideum cDNA clone:dda15f18, 3' ... 52 0.004 2
(DH491176) Monosiga ovata DNA, fosmid clone: MOF-051L13, gen... 52 0.004 2
(AC213013) Populus trichocarpa clone POP018-B03, complete se... 46 0.004 4
(CP000993) Borrelia recurrentis A1, complete genome. 34 0.004 17
(DC467267) Monosiga ovata cDNA, clone: MOC-025B12, 5'end. 46 0.005 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 50 0.005 11
(DH503802) Monosiga ovata DNA, fosmid clone: MOF-073N16, gen... 52 0.005 2
(AC126624) Rattus norvegicus clone CH230-78D18, *** SEQUENCI... 44 0.005 2
(AC094661) Rattus norvegicus clone CH230-5C1, *** SEQUENCING... 44 0.006 2
(AC094927) Rattus norvegicus clone CH230-6B23, WORKING DRAFT... 44 0.006 2
(EY334001) CAWY6064.rev CAWY Helobdella robusta Subtracted E... 46 0.006 2
(CU861474) Zebrafish DNA sequence from clone CH73-129N15 in ... 38 0.006 2
(ED148183) AUAC-aag11g07.b1 Ascaris suum whole genome shotgu... 48 0.006 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.006 12
(ED561794) MUGQ_CH252P142B04T7_CN145_016 CHORI-252 Vervet Mo... 50 0.007 2
(ED560084) MUGQ_CH252P137H10T7_CN136_041 CHORI-252 Vervet Mo... 50 0.007 2
(ET032643) MUGQ_CH252P334D24T7_GL534_094 CHORI-252 Vervet Mo... 50 0.007 2
(BX606936) Anopheles gambiae EST, clone AGCBS63TR. 40 0.007 2
(AJ005426) Lysiphlebus fabarum mitochondrial DNA for tRNA-Va... 34 0.007 5
(AC177640) Strongylocentrotus purpuratus clone R3-1020F19, W... 54 0.007 4
(DQ993217) Haliotis midae microsatellite HmLCS18 sequence. 48 0.008 2
(CR751563) Zebrafish DNA sequence from clone CH211-203C10 in... 54 0.008 1
(AL935062) Zebrafish DNA sequence from clone CH211-231F23 in... 54 0.008 1
(AC122789) Mus musculus chromosome 5, clone RP24-258A20, com... 54 0.008 1
(AC024610) Homo sapiens chromosome 17, clone RP11-17M24, com... 54 0.008 1
(AC129862) Rattus norvegicus clone CH230-97O6, *** SEQUENCIN... 54 0.008 1
(AC128909) Rattus norvegicus clone CH230-321C12, WORKING DRA... 54 0.008 1
(AC123400) Rattus norvegicus clone CH230-404I15, *** SEQUENC... 54 0.008 1
(AC117146) Rattus norvegicus clone CH230-210O2, WORKING DRAF... 54 0.008 1
(AC117048) Rattus norvegicus clone CH230-390M23, *** SEQUENC... 54 0.008 1
(AC104289) Rattus norvegicus clone CH230-124G1, WORKING DRAF... 54 0.008 1
(AC098662) Rattus norvegicus clone CH230-118I1, *** SEQUENCI... 54 0.008 1
(CR749744) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 54 0.008 1
(AC225677) Macropus eugenii clone ME_KBa-72B1, WORKING DRAFT... 54 0.008 1
(AC201508) Strongylocentrotus purpuratus clone R3-3082B23, W... 54 0.008 1
(AC181907) Strongylocentrotus purpuratus clone R3-1012P21, W... 54 0.008 1
(AC181164) Strongylocentrotus purpuratus clone R3-16B13, WOR... 54 0.008 1
(AC181066) Strongylocentrotus purpuratus clone R3-3050C22, W... 54 0.008 1
(AC180779) Strongylocentrotus purpuratus clone R3-3076A23, W... 54 0.008 1
(AC180766) Strongylocentrotus purpuratus clone R3-3081H11, W... 54 0.008 1
(AC180600) Strongylocentrotus purpuratus clone R3-3092L18, W... 54 0.008 1
(AC179773) Strongylocentrotus purpuratus clone R3-1016E11, W... 54 0.008 1
(AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W... 54 0.008 1
(AC178973) Strongylocentrotus purpuratus clone R3-3122B2, WO... 54 0.008 1
(AC178823) Strongylocentrotus purpuratus clone R3-23A16, WOR... 54 0.008 1
(AC177076) Strongylocentrotus purpuratus clone R3-4004L10, W... 54 0.008 1
(AC176068) Strongylocentrotus purpuratus clone R3-1F21, WORK... 54 0.008 1
(AC169191) Mus musculus chromosome 5 clone RP23-267N12 map 5... 54 0.008 1
(AC016118) Homo sapiens clone RP11-27L10, WORKING DRAFT SEQU... 54 0.008 1
(DH476186) Monosiga ovata DNA, fosmid clone: MOF-025L19, gen... 54 0.008 1
(DE913147) Macropus eugenii DNA, BAC clone: MEB1-097F09_F, 5... 54 0.008 1
(CK425000) AUF_IpSto_13_b23 Stomach cDNA library Ictalurus p... 54 0.008 1
(FG477641) 020916KALA012397HT (KALA) Dormant kiwifruit buds ... 54 0.008 1
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 48 0.009 4
(AC233483) Solanum tuberosum strain Diploid genotype RH89-03... 38 0.010 11
(EH217067) USDA-FP_179865 WHMH (pink hibiscus mealybug) Maco... 44 0.010 2
(GH254527) EST_eluc_evq_1013422 elucevq mixed_tissue Esox lu... 46 0.014 2
(DE221803) Trifolium pratense DNA, clone:RCG13118. 44 0.016 2
(AC178061) Strongylocentrotus purpuratus clone R3-3056L18, W... 46 0.016 5
(AM461145) Vitis vinifera contig VV78X006294.11, whole genom... 48 0.017 3
(AM434872) Vitis vinifera contig VV78X047051.9, whole genome... 46 0.017 3
(AC181922) Strongylocentrotus purpuratus clone R3-1009M22, W... 36 0.018 5
(CB157369) K-EST0216483 L17N670205n1 Homo sapiens cDNA clone... 40 0.018 2
(EY334002) CAWY6064.fwd CAWY Helobdella robusta Subtracted E... 46 0.020 2
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING... 46 0.020 2
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 46 0.020 2
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 46 0.020 2
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 46 0.020 2
(AC113755) Rattus norvegicus clone CH230-193C1, *** SEQUENCI... 52 0.021 2
(GN007803) Sequence 244 from Patent EP2014669. 42 0.021 2
(DC487280) Monosiga ovata cDNA, clone: MOC-054B13, 5'end. 44 0.021 2
(AC005969) Homo sapiens chromosome 17, clone hRPK.215_P_18, ... 42 0.021 2
(DH495425) Monosiga ovata DNA, fosmid clone: MOF-059G19, gen... 46 0.022 2
(EH014617) USDA-FP_187299 Lysiphlebus testaceipes adult whol... 42 0.022 2
(AU061815) Dictyostelium discoideum slug cDNA, clone SLG210. 36 0.022 3
(GH254528) EST_eluc_evq_1013038 elucevq mixed_tissue Esox lu... 46 0.023 2
(DH474878) Monosiga ovata DNA, fosmid clone: MOF-023H19, gen... 46 0.024 2
(EY316330) CAWX26559.fwd CAWX Helobdella robusta Primary Ear... 46 0.024 2
(AC158519) Mus musculus BAC clone RP24-87O4 from chromosome ... 52 0.024 4
(AF312895) Phytophthora cinnamomi clone f21 microsatellite s... 44 0.024 2
(CD511670) AGENCOURT_14361091 NIH_MGC_187 Homo sapiens cDNA ... 40 0.024 2
(DE941155) Macropus eugenii DNA, BAC clone: MEB1-135K03_R, 3... 46 0.025 2
(ER167909) 1095522192189 Global-Ocean-Sampling_GS-33-01-01-1... 44 0.025 2
(CZ175390) MIAA-7N14c.b1 Meloidogyne incognita BAC end seque... 40 0.025 3
(FB571382) Sequence 249 from Patent EP1865317. 36 0.025 8
(BX350236) human full-length cDNA 3-PRIME end of clone CS0DI... 40 0.026 2
(DE219146) Trifolium pratense DNA, clone:RCG10018. 44 0.027 2
(BG542432) 602569505F1 NIH_MGC_77 Homo sapiens cDNA clone IM... 40 0.027 2
(AC008070) Homo sapiens BAC clone RP11-368J13 from 2, comple... 46 0.028 4
(DE220550) Trifolium pratense DNA, clone:RCG11654. 44 0.030 2
(CU539059) Zebrafish DNA sequence from clone CH1073-386G6 in... 52 0.032 1
(AC114699) Rattus norvegicus 19 BAC CH230-235A3 (Children's ... 52 0.032 1
(AC216593) Populus trichocarpa clone POP016-L16, complete se... 52 0.032 1
(AR548304) Sequence 3435 from patent US 6747137. 52 0.032 1
(AM886444) Sipunculus nudus partial Hr gene for hemerythrin,... 52 0.032 1
(AB009080) Dictyostelium discoideum gene for TRFA, complete ... 52 0.032 1
(AC129051) Rattus norvegicus clone CH230-89P7, *** SEQUENCIN... 52 0.032 1
(AC098493) Rattus norvegicus clone CH230-20E13, WORKING DRAF... 52 0.032 1
(AC095303) Rattus norvegicus clone CH230-36O20, WORKING DRAF... 52 0.032 1
(CU539058) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.032 1
(CU234161) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.032 1
(CU041310) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.032 1
(AC184350) Strongylocentrotus purpuratus clone R3-3111D12, W... 52 0.032 1
(AC178867) Strongylocentrotus purpuratus clone R3-26P12, WOR... 52 0.032 1
(AC177739) Strongylocentrotus purpuratus clone R3-1008H3, WO... 52 0.032 1
(DE917976) Macropus eugenii DNA, BAC clone: MEB1-103P18_F, 5... 52 0.032 1
(DE865192) Macropus eugenii DNA, BAC clone: MEB1-033C11_F, 5... 52 0.032 1
(CE727025) tigr-gss-dog-17000315265835 Dog Library Canis lup... 52 0.032 1
(EG645719) gmapov_0002c14.pDNRm13r.scf Gadus morhua ovary li... 52 0.032 1
(EG601801) EMBRYOF101109N19 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr... 52 0.032 1
(EG031797) UI-EH-IJ0-abj-f-05-0-UI.s1 UI-EH-IJ0 Emiliania hu... 52 0.032 1
(CV022859) Rasgscb0446 Salivary Gland 4th instar 3rd period ... 52 0.032 1
(CK813625) Rasgsc3435 Salivary Gland 4th instar 3rd period (... 52 0.032 1
(CK811885) Rasgsc7951 Salivary Gland 4th instar 3rd period (... 52 0.032 1
(BM111883) EST559419 potato roots Solanum tuberosum cDNA clo... 52 0.032 1
(BJ340617) Dictyostelium discoideum cDNA clone:dda3e05, 3' e... 52 0.032 1
(GO063680) EST_ssal_rgh_1083228 ssalrgh mixed_tissue full-le... 52 0.032 1
(DE219495) Trifolium pratense DNA, clone:RCG10419. 44 0.035 2
(DE222207) Trifolium pratense DNA, clone:RCG13627. 44 0.035 2
(AR547390) Sequence 2521 from patent US 6747137. 44 0.035 3
(AC131123) Rattus norvegicus clone CH230-5C18, WORKING DRAFT... 46 0.038 7
(EY332325) CAWY4783.fwd CAWY Helobdella robusta Subtracted E... 42 0.046 2
(DE238617) Trifolium pratense DNA, clone:RCG36170. 44 0.046 2
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 38 0.047 15
(Y13975) Candida albicans PLC1 gene. 44 0.048 3
(DE238587) Trifolium pratense DNA, clone:RCG36121. 44 0.050 2
(AY588380) Humulus lupulus clone HlCAG6 microsatellite seque... 44 0.052 2
(CR925795) Zebrafish DNA sequence from clone DKEY-25C9 in li... 50 0.053 6
(AC181074) Strongylocentrotus purpuratus clone R3-3047N01, W... 46 0.056 7
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.056 8
(DE221789) Trifolium pratense DNA, clone:RCG13104. 44 0.057 2
(DE238170) Trifolium pratense DNA, clone:RCG34661. 44 0.057 2
(BC028935) Homo sapiens chromosome 3 open reading frame 64, ... 40 0.058 2
(DE236563) Trifolium pratense DNA, clone:RCG32026. 44 0.060 2
(DE219693) Trifolium pratense DNA, clone:RCG10647. 44 0.063 2
(AY013583) Haliotis kamtschatkana clone Hka85 microsatellite... 44 0.064 2
(BD158253) Primer for synthesizing full-length cDNA and use ... 40 0.064 2
(AX880204) Sequence 15109 from Patent EP1074617. 40 0.064 2
(GM048552) Sequence 388 from Patent WO2007026255. 40 0.064 2
(AK023140) Homo sapiens cDNA FLJ13078 fis, clone NT2RP3002002. 40 0.064 2
(CE602964) tigr-gss-dog-17000366690968 Dog Library Canis lup... 44 0.065 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.067 11
(BX247899) Zebrafish DNA sequence from clone CH211-229B6 in ... 46 0.072 5
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 0.075 14
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 44 0.075 2
(AC137680) Mus musculus chromosome 13, clone RP23-454P19, co... 48 0.075 2
(AK123213) Homo sapiens cDNA FLJ41219 fis, clone BRAMY2000893. 40 0.075 2
(AC168386) Strongylocentrotus purpuratus clone R3-4013A3, WO... 50 0.077 5
(AC178450) Strongylocentrotus purpuratus clone R3-3039F18, W... 48 0.078 2
(AC179364) Strongylocentrotus purpuratus clone R3-1102B4, WO... 40 0.078 2
(AC181403) Strongylocentrotus purpuratus clone R3-4M17, WORK... 40 0.078 2
(AC006808) Caenorhabditis elegans cosmid Y58G8A, complete se... 38 0.080 4
(AL833467) Homo sapiens mRNA; cDNA DKFZp686H0517 (from clone... 40 0.080 2
(EC168658) MNE00001808 Monosiga ovata Non-normalized Monosig... 42 0.080 2
(AC161248) Mus musculus BAC clone RP24-530L5 from chromosome... 40 0.081 5
(AC023122) Homo sapiens BAC clone RP11-297L21 from 3, comple... 44 0.083 6
(EY361758) CAWZ7895.rev CAWZ Helobdella robusta Primary Late... 42 0.083 2
(CS468878) Sequence 69 from Patent EP1748080. 38 0.085 10
(CS468877) Sequence 68 from Patent EP1748080. 38 0.085 10
(CS419355) Sequence 69 from Patent WO2006094836. 38 0.085 10
(CS419354) Sequence 68 from Patent WO2006094836. 38 0.085 10
(EY310704) CAWX23066.rev CAWX Helobdella robusta Primary Ear... 42 0.085 2
(DH469390) Monosiga ovata DNA, fosmid clone: MOF-014B01, gen... 44 0.086 2
(DC462719) Monosiga ovata cDNA, clone: MOC-018H16, 5'end. 42 0.087 2
(FH364915) CHO_OF4478xk04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 0.091 2
(FH425701) CHO_OF4303xl19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.094 2
(DH495319) Monosiga ovata DNA, fosmid clone: MOF-059D18, gen... 44 0.094 2
(AF268059) Candidatus Carsonella ruddii natural-host Arytain... 42 0.095 3
(FH425777) CHO_OF4303xl19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.098 2
(AX746774) Sequence 299 from Patent EP1308459. 40 0.10 2
(AR717799) Sequence 299 from patent US 6943241. 40 0.10 2
(AK091089) Homo sapiens cDNA FLJ33770 fis, clone BRHIP200035... 40 0.10 2
(DE854410) Macropus eugenii DNA, BAC clone: MEB1-018L18_F, 5... 46 0.10 2
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ... 34 0.10 8
(DL209456) Full length cDNA. 40 0.10 2
(DD036164) Full length cDNA. 40 0.10 2
(CQ843247) Sequence 1894 from Patent EP1440981. 40 0.10 2
(AK126187) Homo sapiens cDNA FLJ44199 fis, clone THYMU3000655. 40 0.10 2
(BX640821) Homo sapiens mRNA; cDNA DKFZp686M05189 (from clon... 40 0.10 2
(AE001426) Plasmodium falciparum 3D7 chromosome 2 section 63... 40 0.11 3
(BC060887) Homo sapiens chromosome 3 open reading frame 64, ... 40 0.11 2
(AL110479) Caenorhabditis elegans YAC Y105C5B. 38 0.12 8
(AB253466) Chlamys farreri DNA, microsatellite sequence, clo... 46 0.12 3
(BX648818) Homo sapiens mRNA; cDNA DKFZp313E1820 (from clone... 40 0.12 2
(EA737889) Sequence 9335 from patent US 7368527. 40 0.12 2
(EA737888) Sequence 9334 from patent US 7368527. 40 0.12 2
(DT994212) CNB171-E02.y1d-s SHGC-CNB Gasterosteus aculeatus ... 34 0.13 3
(AY160102) Dictyostelium discoideum nucleotide exchange fact... 44 0.13 3
(CR392347) Zebrafish DNA sequence from clone DKEY-37G12 in l... 50 0.13 1
(BX908786) Zebrafish DNA sequence from clone CH211-13O8 in l... 50 0.13 1
(BX470221) Zebrafish DNA sequence from clone CH211-86K6 in l... 50 0.13 1
(AL935329) Zebrafish DNA sequence from clone CH211-253P2 in ... 50 0.13 1
(CT030195) Mouse DNA sequence from clone RP23-191J8 on chrom... 50 0.13 1
(AC126677) Mus musculus BAC clone RP24-156D14 from chromosom... 50 0.13 1
(AC124471) Mus musculus BAC clone RP24-79D7 from 12, complet... 50 0.13 1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple... 50 0.13 1
(AC113495) Mus musculus chromosome 9, clone RP23-361O11, com... 50 0.13 1
(AC102643) Mus musculus chromosome 8, clone RP23-304B22, com... 50 0.13 1
(AC097832) Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 50 0.13 1
(AC193620) Pan troglodytes BAC clone CH251-267P16 from chrom... 50 0.13 1
(Y08366) Xanthophyllomyces dendrorhous gpd gene. 50 0.13 1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 50 0.13 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 50 0.13 1
(EF069399) Batrachochytrium dendrobatidis strain JAM059 vari... 50 0.13 1
(CT571263) Medicago truncatula chromosome 5 clone mte1-7c20,... 50 0.13 1
(AP007164) Aspergillus oryzae RIB40 genomic DNA, SC111. 50 0.13 1
(AC174287) Medicago truncatula clone mth2-32a8, complete seq... 50 0.13 1
(EA115582) Sequence 11 from patent US 7205123. 50 0.13 1
(EA115581) Sequence 9 from patent US 7205123. 50 0.13 1
(CS279233) Sequence 11 from Patent EP1640456. 50 0.13 1
(CS279231) Sequence 9 from Patent EP1640456. 50 0.13 1
(A63886) Sequence 11 from Patent WO9723633. 50 0.13 1
(A63884) Sequence 9 from Patent WO9723633. 50 0.13 1
(AR366153) Sequence 11 from patent US 6329141. 50 0.13 1
(AR366152) Sequence 9 from patent US 6329141. 50 0.13 1
(AF216808) Homo sapiens chromosome 8 clone RP5-826O12, GS1-1... 50 0.13 1
(AC174047) Homo sapiens chromosome 2 clone WI2-2257M9, compl... 50 0.13 1
(AC093015) Homo sapiens 12q BAC RP11-534K23 (Roswell Park Ca... 50 0.13 1
(AC013302) Homo sapiens chromosome , clone RP11-3P9, complet... 50 0.13 1
(AC007262) Homo sapiens chromosome 14 clone containing gene ... 50 0.13 1
(AC162085) Bos taurus clone CH240-109P6, WORKING DRAFT SEQUE... 50 0.13 1
(AC139595) Rattus norvegicus clone CH230-36J10, WORKING DRAF... 50 0.13 1
(AC135751) Rattus norvegicus clone CH230-82A16, WORKING DRAF... 50 0.13 1
(AC129984) Homo sapiens chromosome 8 clone RP1-124D8 map 8, ... 50 0.13 1
(AC127845) Rattus norvegicus clone CH230-208E9, WORKING DRAF... 50 0.13 1
(AC126641) Rattus norvegicus clone CH230-119F19, *** SEQUENC... 50 0.13 1
(AC126591) Rattus norvegicus clone CH230-224C4, WORKING DRAF... 50 0.13 1
(AC120938) Rattus norvegicus clone CH230-24H24, *** SEQUENCI... 50 0.13 1
(AC108904) Felis catus clone RP86-80B9, WORKING DRAFT SEQUEN... 50 0.13 1
(AC097100) Rattus norvegicus clone CH230-11K16, *** SEQUENCI... 50 0.13 1
(AC096117) Rattus norvegicus clone CH230-10P18, *** SEQUENCI... 50 0.13 1
(FP236444) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.13 1
(CU656003) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.13 1
(CU582812) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.13 1
(AC090705) Homo sapiens chromosome 8 clone RP5-826O12 map 8,... 50 0.13 1
(AC084129) Homo sapiens chromosome 8 clone CTD-3165J18 map 8... 50 0.13 1
(CU468997) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.13 1
(CU463217) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.13 1
(CR762446) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.13 1
(AC232673) Lama pacos clone CH246-364B8, WORKING DRAFT SEQUE... 50 0.13 1
(AC221091) Bos taurus clone CH240-392N5, WORKING DRAFT SEQUE... 50 0.13 1
(AC200918) Strongylocentrotus purpuratus clone R3-1009A20, W... 50 0.13 1
(AC192827) Pan troglodytes chromosome X clone CH251-584H17, ... 50 0.13 1
(AC184667) Strongylocentrotus purpuratus clone R3-3016G22, W... 50 0.13 1
(AC181925) Strongylocentrotus purpuratus clone R3-1009K09, W... 50 0.13 1
(AC181125) Strongylocentrotus purpuratus clone R3-16I2, WORK... 50 0.13 1
(AC179368) Strongylocentrotus purpuratus clone R3-1101P9, WO... 50 0.13 1
(AC179233) Strongylocentrotus purpuratus clone R3-1106L24, W... 50 0.13 1
(AC178476) Strongylocentrotus purpuratus clone R3-3039C18, W... 50 0.13 1
(AC176559) Strongylocentrotus purpuratus clone R3-3076H3, WO... 50 0.13 1
(AC175917) Strongylocentrotus purpuratus clone R3-12M2, WORK... 50 0.13 1
(AC168375) Strongylocentrotus purpuratus clone R3-4013G22, W... 50 0.13 1
(AC168367) Strongylocentrotus purpuratus clone R3-4013M15, W... 50 0.13 1
(AC168352) Strongylocentrotus purpuratus clone R3-56K4, WORK... 50 0.13 1
(AC021383) Homo sapiens clone RP11-26O20, WORKING DRAFT SEQU... 50 0.13 1
(AC016340) Homo sapiens chromosome 15 clone RP11-113C11 map ... 50 0.13 1
(AC016275) Homo sapiens clone RP11-20J10, WORKING DRAFT SEQU... 50 0.13 1
(EK133596) 1093011413994 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.13 1
(AQ112319) CIT-HSP-2371P10.TF CIT-HSP Homo sapiens genomic c... 50 0.13 1
(DX548189) GH_MBb0065K20f GH_MBb Gossypium hirsutum genomic ... 50 0.13 1
(DU393607) 1098397073483 CHORI-243 Ovis aries genomic clone ... 50 0.13 1
(DH492858) Monosiga ovata DNA, fosmid clone: MOF-054L22, gen... 50 0.13 1
(DH472403) Monosiga ovata DNA, fosmid clone: MOF-019D09, gen... 50 0.13 1
(DE973523) Macropus eugenii DNA, BAC clone: MEB1-179I20_F, 5... 50 0.13 1
(BZ134514) CH230-431L7.TJ CHORI-230 Segment 2 Rattus norvegi... 50 0.13 1
(DW265759) UI-S-GN1-abu-a-14-0-UI.s1 UI-S-GN1 Euprymna scolo... 50 0.13 1
(CV022730) Rasgscb0317 Salivary Gland 4th instar 3rd period ... 50 0.13 1
(CK814956) Rasgsc5803 Salivary Gland 4th instar 3rd period (... 50 0.13 1
(BM586765) 17000687319869 A.Gam.ad.cDNA.blood1 Anopheles gam... 50 0.13 1
(BJ440314) Dictyostelium discoideum cDNA clone:ddv43f08, 3' ... 50 0.13 1
(BJ406759) Dictyostelium discoideum cDNA clone:dds36h11, 3' ... 50 0.13 1
(BJ406028) Dictyostelium discoideum cDNA clone:dds33l20, 3' ... 50 0.13 1
(BJ405585) Dictyostelium discoideum cDNA clone:dds32n06, 3' ... 50 0.13 1
(BJ403370) Dictyostelium discoideum cDNA clone:dds24m19, 3' ... 50 0.13 1
(BJ356076) Dictyostelium discoideum cDNA clone:dda59m03, 3' ... 50 0.13 1
(BJ350528) Dictyostelium discoideum cDNA clone:dda40l05, 3' ... 50 0.13 1
(FE808874) CCAG28261.b1 CCAG Petrolisthes cinctipes heart, g... 50 0.13 1
(EY359617) CAWZ6586.fwd CAWZ Helobdella robusta Primary Late... 50 0.13 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 46 0.13 9
(BD428950) Method and nucleic acids for pharmacogenomic meth... 32 0.13 4
(AX348429) Sequence 124 from Patent WO0202806. 32 0.13 4
(AC232559) Brassica rapa subsp. pekinensis clone KBrH038M21,... 44 0.13 3
(EV782089) HA_MX1_17c05_SP6 Lobster Multiple Tissues, Normal... 40 0.13 2
(AC188119) Trichinella spiralis chromosome UNK clone TS195-1... 38 0.15 6
(AF098989) Caenorhabditis elegans cosmid F47G6, complete seq... 40 0.15 4
(EG551016) MM01G16_RP Sugar Beet germination cDNA library Be... 32 0.15 4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.16 16
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 34 0.16 16
(EF069400) Batrachochytrium dendrobatidis strain JAM059 vari... 40 0.16 2
(AL844506) Plasmodium falciparum chromosome 7. 36 0.17 12
(CV022534) Rasgscb0119 Salivary Gland 4th instar 3rd period ... 44 0.17 2
(BD460591) Diagnosis of Diseases Associated with Cell Cycle. 36 0.18 5
(BD452513) Diagnosis of Diseases Associated with Cell Cycle. 36 0.18 5
(AX348892) Sequence 350 from Patent WO0202807. 36 0.18 5
(AX252127) Sequence 388 from Patent WO0168911. 36 0.18 5
(CR753897) Zebrafish DNA sequence from clone CH211-219A15 in... 44 0.19 6
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 42 0.20 8
(AC179430) Strongylocentrotus purpuratus clone R3-62L13, WOR... 38 0.20 4
(EY298073) CAWX13710.rev CAWX Helobdella robusta Primary Ear... 44 0.21 2
(EU478964) Perisoreus infaustus microsatellite SJ091 sequence. 46 0.21 2
(AC182656) Populus trichocarpa clone Pop1-122F12, complete s... 34 0.22 6
(DQ191761) Monosiga ovata Hoglet (hoglet) mRNA, complete cds. 42 0.22 2
(DX263733) OR_ABa0156P13.r OR_ABa Oryza ridleyi genomic clon... 36 0.23 2
(CU467598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.23 6
(AC025676) Homo sapiens chromosome 5 clone RP11-549K20 map 5... 40 0.25 5
(CU468516) Wallaby DNA sequence from clone MEKBa-266M20AB. 46 0.25 3
(AU060202) Dictyostelium discoideum slug cDNA, clone SLA569. 44 0.25 2
(AC181652) Strongylocentrotus purpuratus clone R3-10K16, WOR... 38 0.25 7
(BM162173) EST564696 PyBS Plasmodium yoelii yoelii cDNA clon... 44 0.25 2
(BM166357) EST568880 PyBS Plasmodium yoelii yoelii cDNA clon... 44 0.26 2
(EF171191) Sus scrofa clone KVL15099 microsatellite sequence. 40 0.26 2
(CZ801077) OC__Ba0172I18.r OC__Ba Oryza coarctata genomic cl... 42 0.26 2
(DH571117) Rattus norvegicus DNA, BAC clone: RNB1-086J07, 3'... 42 0.27 2
(DC233632) Plasmodium berghei strain ANKA cDNA clone:SG02821... 38 0.28 2
(AC124879) Rattus norvegicus clone CH230-29P13, WORKING DRAF... 38 0.28 2
(EC167429) MNE00003314 Monosiga ovata Non-normalized Monosig... 42 0.28 2
(AC129816) Rattus norvegicus clone CH230-22B3, WORKING DRAFT... 38 0.28 2
(AC115419) Rattus norvegicus clone CH230-112P18, WORKING DRA... 38 0.28 2
(DH502747) Monosiga ovata DNA, fosmid clone: MOF-072B11, gen... 44 0.28 2
(CR381577) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 0.28 2
(BX005347) Zebrafish DNA sequence from clone DKEY-199K9 in l... 38 0.28 2
(AC232077) Solanum tuberosum chromosome 1 clone RH095H15, **... 38 0.29 2
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 0.29 10
(AC201528) Strongylocentrotus purpuratus clone R3-3090B7, WO... 44 0.29 2
(AX344565) Sequence 16 from Patent WO0200932. 34 0.29 12
(AC201329) Strongylocentrotus purpuratus clone R3-16M4, WORK... 48 0.29 2
(FE744577) CAYC2415.g1 CAYC Petrolisthes cinctipes heart, ne... 42 0.30 2
(AC209584) Solanum lycopersicum DNA sequence from clone LE_H... 38 0.30 6
(BM160541) EST563064 PyBS Plasmodium yoelii yoelii cDNA clon... 44 0.30 2
(EY330703) CAWY3674.rev CAWY Helobdella robusta Subtracted E... 40 0.30 2
(AC016316) Homo sapiens clone RP11-28K18, WORKING DRAFT SEQU... 40 0.30 4
(AC176001) Strongylocentrotus purpuratus clone R3-17L22, WOR... 46 0.31 4
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK... 48 0.31 4
(DE908283) Macropus eugenii DNA, BAC clone: MEB1-090N01_F, 5... 44 0.31 2
(DQ832718) Phytophthora ramorum mitochondrion, complete genome. 44 0.32 5
(FH931882) CHO_NF2029xb18f1.ab1 CHO_NF2 Nicotiana tabacum ge... 46 0.32 2
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr... 44 0.32 5
(AC159867) Bos taurus clone CH240-71K2, WORKING DRAFT SEQUEN... 34 0.32 5
(EC825660) SME00001222 esmbsro2 Sawyeria marylandensis cDNA,... 42 0.32 2
(CK813218) Rasgsc2583 Salivary Gland 4th instar 3rd period (... 44 0.33 2
(AM427503) Vitis vinifera contig VV78X117425.5, whole genome... 34 0.33 5
(DH507154) Monosiga ovata DNA, fosmid clone: MOF-079F22, gen... 42 0.33 2
(AL645783) Mouse DNA sequence from clone RP23-459H16 on chro... 46 0.34 3
(AC217643) Populus trichocarpa clone POP035-K18, complete se... 34 0.34 8
(EJ183140) 1092344136121 Global-Ocean-Sampling_GS-27-01-01-1... 46 0.35 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 0.35 6
(AM461563) Vitis vinifera contig VV78X189112.3, whole genome... 36 0.36 3
(EY331495) CAWY4206.fwd CAWY Helobdella robusta Subtracted E... 38 0.37 2
(EE660209) CHES9278.b1_K15.ab1 CHE(LMS) serpentine sunflower... 38 0.37 2
(EY331494) CAWY4206.rev CAWY Helobdella robusta Subtracted E... 38 0.37 2
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 32 0.38 7
(FK718072) pl_073-G2 Ilyanassa (snail) 0-48h Ilyanassa obsol... 42 0.38 2
(AC112257) Mus musculus BAC clone RP23-43A18 from 16, comple... 40 0.39 6
(AC177047) Strongylocentrotus purpuratus clone R3-38P16, WOR... 46 0.40 5
(FB744742) Sequence 65 from Patent WO2008011620. 34 0.41 8
(FB332203) Sequence 10 from Patent WO2007115213. 34 0.41 8
(CS448326) Sequence 10 from Patent WO2006117381. 34 0.41 8
(GM987246) Sequence 10 from Patent EP2009115. 34 0.41 8
(GM841799) Sequence 122 from Patent WO2008122447. 34 0.41 8
(AC104926) Mus musculus clone RP24-573F21, WORKING DRAFT SEQ... 44 0.42 4
(FB676006) Sequence 9 from Patent WO2007118704. 34 0.43 8
(AL833806) Mouse DNA sequence from clone RP23-425H11 on chro... 44 0.44 3
(AC171651) Macaca mulatta clone CH250-61I10, WORKING DRAFT S... 44 0.44 4
(AC176837) Strongylocentrotus purpuratus clone R3-3120B11, W... 44 0.44 8
(ER403038) 1095351037527 Global-Ocean-Sampling_GS-34-01-01-1... 36 0.45 3
(FK915759) EST_lsal_evj_932297 lsalevj mixed_tissue_mixed_st... 44 0.45 2
(BX323995) Zebrafish DNA sequence from clone RP71-86K19 in l... 36 0.48 6
(CR376733) Zebrafish DNA sequence from clone DKEY-189O24 in ... 48 0.50 1
(CR361549) Zebrafish DNA sequence from clone CH211-241I6 in ... 48 0.50 1
(BX537162) Zebrafish DNA sequence from clone DKEY-9A20 in li... 48 0.50 1
(AU048002) Rattus norvegicus, OTSUKA clone, 519c06, microsat... 48 0.50 1
(AL773549) Mouse DNA sequence from clone RP23-183A1 on chrom... 48 0.50 1
(AC164572) Mus musculus 6 BAC RP24-89J17 (Roswell Park Cance... 48 0.50 1
(AC163331) Mus musculus chromosome 5, clone RP23-50G20, comp... 48 0.50 1
(AC154731) Mus musculus BAC clone RP23-121M22 from chromosom... 48 0.50 1
(AC138358) Mus musculus chromosome 1, clone RP24-147G10, com... 48 0.50 1
(AC120002) Mus musculus chromosome 12, clone RP24-147D14, co... 48 0.50 1
(AC116892) Mus musculus chromosome 8, clone RP24-529J16, com... 48 0.50 1
(AC115299) Mus musculus BAC clone RP23-444O19 from 13, compl... 48 0.50 1
(AC201952) Rhesus Macaque BAC CH250-240E16 () complete sequ... 48 0.50 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 48 0.50 1
(CU640366) Podospora anserina genomic DNA chromosome 2, supe... 48 0.50 1
(AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005. 48 0.50 1
(DJ402737) Methods and nucleic acids for analyses of colo re... 48 0.50 1
(DJ402665) Methods and nucleic acids for analyses of colo re... 48 0.50 1
(DJ060365) Method and nucleic acids for the improved treatme... 48 0.50 1
(CS124712) Sequence 398 from Patent WO2005059172. 48 0.50 1
(AC078907) Homo sapiens chromosome 17, clone RP11-160L11, co... 48 0.50 1
(AC161803) Mus musculus chromosome 5 clone RP23-450K3 map 5,... 48 0.50 1
(AC161110) Mus musculus chromosome 5 clone wi1-1660F20 map 5... 48 0.50 1
(AC135646) Rattus norvegicus clone CH230-273H21, *** SEQUENC... 48 0.50 1
(AC133056) Rattus norvegicus clone CH230-25D4, WORKING DRAFT... 48 0.50 1
(AC128902) Rattus norvegicus clone CH230-296O18, WORKING DRA... 48 0.50 1
(AC127128) Rattus norvegicus clone CH230-134E5, *** SEQUENCI... 48 0.50 1
(AC114393) Rattus norvegicus clone CH230-122P20, *** SEQUENC... 48 0.50 1
(AC112569) Rattus norvegicus clone CH230-60I19, WORKING DRAF... 48 0.50 1
(AC110516) Mus musculus clone RP23-203M17, WORKING DRAFT SEQ... 48 0.50 1
(AC107474) Rattus norvegicus clone CH230-112C3, WORKING DRAF... 48 0.50 1
(AC107351) Rattus norvegicus clone CH230-92G10, WORKING DRAF... 48 0.50 1
(AC106294) Rattus norvegicus clone CH230-76O10, WORKING DRAF... 48 0.50 1
(AC106260) Rattus norvegicus clone CH230-66N17, *** SEQUENCI... 48 0.50 1
(AC106163) Rattus norvegicus clone CH230-56H9, WORKING DRAFT... 48 0.50 1
(CU928037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CU855979) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CU633709) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(AC090611) Homo sapiens chromosome 17 clone RP11-516G2 map 1... 48 0.50 1
(CU466939) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CU466262) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.50 1
(CU407235) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CT954285) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CT827825) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.50 1
(CR376768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.50 1
(BX000350) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.50 1
(AL356138) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.50 1
(AC181162) Strongylocentrotus purpuratus clone R3-16C12, WOR... 48 0.50 1
(AC181133) Strongylocentrotus purpuratus clone R3-3037E15, W... 48 0.50 1
(AC180841) Strongylocentrotus purpuratus clone R3-3069P16, W... 48 0.50 1
(AC180235) Strongylocentrotus purpuratus clone R3-36L07, WOR... 48 0.50 1
(AC180029) Strongylocentrotus purpuratus clone R3-23N1, WORK... 48 0.50 1
(AC178568) Strongylocentrotus purpuratus clone R3-3025P19, W... 48 0.50 1
(AC178472) Strongylocentrotus purpuratus clone R3-3035A8, WO... 48 0.50 1
(AC176941) Strongylocentrotus purpuratus clone R3-33M4, WORK... 48 0.50 1
(AC175947) Strongylocentrotus purpuratus clone R3-17C6, WORK... 48 0.50 1
(AC168814) Strongylocentrotus purpuratus clone R3-13G18, WOR... 48 0.50 1
(AC168618) Strongylocentrotus purpuratus clone R3-3046F23, W... 48 0.50 1
(AZ319172) 1M0038H07R Mouse 10kb plasmid UUGC1M library Mus ... 48 0.50 1
(AZ272052) RPCI-23-158I14.TJ RPCI-23 Mus musculus genomic cl... 48 0.50 1
(EK388479) 1095469492078 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.50 1
(EK364439) 1095469390968 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.50 1
(DU884707) 399804 Tomato HindIII BAC Library Solanum lycoper... 48 0.50 1
(DU021443) 1069 Tomato HindIII BAC Library Solanum lycopersi... 48 0.50 1
(CR222304) Reverse strand read from insert in 5'HPRT inserti... 48 0.50 1
(BX126388) Danio rerio genomic clone DKEY-77A17, genomic sur... 48 0.50 1
(AG369784) Mus musculus molossinus DNA, clone:MSMg01-174I01.... 48 0.50 1
(CK815653) Rasgsc7326 Salivary Gland 4th instar 3rd period (... 48 0.50 1
(CD120865) ME1-0064T-L191-G05-U.B ME1-0064 Schistosoma manso... 48 0.50 1
(CD120849) ME1-0064T-L191-E03-U.B ME1-0064 Schistosoma manso... 48 0.50 1
(BM649334) 17000687368683 A.Gam.ad.cDNA1 Anopheles gambiae c... 48 0.50 1
(BM618651) 17000687439321 A.Gam.ad.cDNA1 Anopheles gambiae c... 48 0.50 1
(FG585637) TpNBL014264 Trichinella pseudospiralis new born l... 48 0.50 1
(EY251493) CATY8105.fwd CATY Aspergillus niger fungal filame... 48 0.50 1
(EY243820) CATY3950.fwd CATY Aspergillus niger fungal filame... 48 0.50 1
(EY238990) CATY1356.fwd CATY Aspergillus niger fungal filame... 48 0.50 1
(EX738464) rznsaa0_004114.y1 Gadus morhua stem cell library ... 48 0.50 1
(DL005693) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 36 0.51 5
(CS459618) Sequence 99 from Patent WO2006117596. 36 0.51 5
(AC226831) Medicago truncatula chromosome 2 clone mth2-64k18... 40 0.57 4
(AC184427) Strongylocentrotus purpuratus clone R3-3078O6, WO... 46 0.57 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.58 9
(ER420367) 1092963699615 Global-Ocean-Sampling_GS-35-01-01-1... 36 0.59 3
(CS374552) Sequence 655 from Patent WO2006034879. 46 0.61 2
(AC168406) Strongylocentrotus purpuratus clone R3-4002G5, WO... 38 0.62 4
(AC214254) Heliconius erato clone BBAM-19O6, WORKING DRAFT S... 36 0.62 8
(AL731846) Sminthopsis DNA sequence from clone XX-38L18. 40 0.62 4
(AC178408) Strongylocentrotus purpuratus clone R3-3112E9, WO... 46 0.62 5
(AL078595) Human DNA sequence from clone RP3-399J4 on chromo... 36 0.62 7
(AK278037) Gryllus bimaculatus mRNA, GBcontig24898. 38 0.63 2
(AF024654) Dictyostelium discoideum hybrid histidine kinase ... 40 0.63 4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 44 0.63 9
(AC217788) Solanum lycopersicum chromosome 9 clone C09HBa017... 46 0.63 4
(BD453067) Diagnosis of Diseases Associated with tumor suppr... 32 0.64 7
(AX251546) Sequence 514 from Patent WO0168912. 32 0.64 7
(AC221666) Bos taurus clone CH240-389H11, WORKING DRAFT SEQU... 42 0.64 5
(DH462889) Monosiga ovata DNA, fosmid clone: MOF-002I14, gen... 40 0.65 2
(AX345093) Sequence 164 from Patent WO0200928. 32 0.66 6
(AM456788) Vitis vinifera contig VV78X104670.13, whole genom... 38 0.66 4
(DH473627) Monosiga ovata DNA, fosmid clone: MOF-021F05, gen... 38 0.71 2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 34 0.71 6
(DH464450) Monosiga ovata DNA, fosmid clone: MOF-005B22, gen... 40 0.72 2
(AC181229) Strongylocentrotus purpuratus clone R3-115L20, WO... 46 0.74 5
(DH477507) Monosiga ovata DNA, fosmid clone: MOF-028B05, gen... 40 0.76 2

>(AF057019) Dictyostelium discoideum interaptin (abpD) gene,
complete cds.
Length = 8574

Score = 557 bits (281), Expect(3) = 0.0
Identities = 281/281 (100%)
Strand = Plus / Minus


Query: 212 gagaattaattaaaatatttttaaaaaaccaatcaattttataatattcccaaggatcat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gagaattaattaaaatatttttaaaaaaccaatcaattttataatattcccaaggatcat 934


Query: 272 cttgttcagtatttttacttggtttttgataattgatatttgggaaaacattatacacaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 cttgttcagtatttttacttggtttttgataattgatatttgggaaaacattatacacaa 874


Query: 332 aaaataagaaatttgaagtttttgaaattgttggtaatataacttcaaatgattgatctt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaaataagaaatttgaagtttttgaaattgttggtaatataacttcaaatgattgatctt 814


Query: 392 tatcaagttcaagttctaatgctaaatcatatctaagataattaaatacttccaaacaac 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tatcaagttcaagttctaatgctaaatcatatctaagataattaaatacttccaaacaac 754


Query: 452 cagtttccaatgcacaatataaccatactgattgaggtttt 492
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cagtttccaatgcacaatataaccatactgattgaggtttt 713

Score = 507 bits (256), Expect(3) = 0.0
Identities = 256/256 (100%)
Strand = Plus / Minus


Query: 510 taaacctgtacctataccaccaccactacttgaacgtttaagtttaaaaatttgaggata 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taaacctgtacctataccaccaccactacttgaacgtttaagtttaaaaatttgaggata 636


Query: 570 cttttcatgaattaatttaattgcaggtaaatgtgaacctttaatcaactcattaattat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cttttcatgaattaatttaattgcaggtaaatgtgaacctttaatcaactcattaattat 576


Query: 630 aaatataataatcttttctgttgttaaaattttaagattacaactactattactaccacc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaatataataatcttttctgttgttaaaattttaagattacaactactattactaccacc 516


Query: 690 accaccactactaaattgatttaaaagtaattctaataatcctaaaatgaaatccattgg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 accaccactactaaattgatttaaaagtaattctaataatcctaaaatgaaatccattgg 456


Query: 750 ggcaattctaaattct 765
||||||||||||||||
Sbjct: 455 ggcaattctaaattct 440

Score = 107 bits (54), Expect(3) = 0.0
Identities = 54/54 (100%)
Strand = Plus / Minus


Query: 112 aatattacaatttaaaaaatatacccatccatatcttcataacttaaaaaatta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 aatattacaatttaaaaaatatacccatccatatcttcataacttaaaaaatta 1040

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 995,129,182
Number of extensions: 77015317
Number of successful extensions: 8203063
Number of sequences better than 10.0: 4791
Length of query: 765
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 741
Effective length of database: 99,340,224,878
Effective search space: 73611106634598
Effective search space used: 73611106634598
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Contig-U03720-1Q.Seq.d
(765 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM920436_2040(AM920436|pid:none) Penicillium chrysogenum Wiscons... 36 1.2
DQ493616_1(DQ493616|pid:none) Trypanosoma cruzi strain CL Brener... 33 7.6

>AM920436_2040(AM920436|pid:none) Penicillium chrysogenum Wisconsin
54-1255 complete genome, contig Pc00c21.
Length = 746

Score = 36.2 bits (82), Expect = 1.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2

Query: 404 LELDKDQSFEVILPTISKTSNFLFFVYNVFPNINYQKPSKNTEQDDPWEYYKID 243
L L +D ++ +L N + FV+ V PN+N+ P + DP YK+D
Sbjct: 660 LNLPEDSNWPAVLFIAEDARNAVLFVFQVAPNVNHSWPRIKLQGLDPQASYKVD 713

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 689,210,263
Number of extensions: 8714255
Number of successful extensions: 18206
Number of sequences better than 10.0: 2
Number of HSP's gapped: 18205
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 129
Effective length of database: 649,361,233
Effective search space: 83767599057
Effective search space used: 83767599057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.70 alm: 0.13 top: 0.80 tms: 0.20 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

32.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: nuclear
12.0 %: vacuolar
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U03720-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0