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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03718-1
Contig ID Contig-U03718-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03718-1 (Contig-U03718-1Q) /CSM_Contig/Contig-U03718-1Q.Seq.d
GATTATTCAAATTTACCAGTGGATGCACGTTTATCAATTAGTGTCTATAG
TGCAAATGAAACAGTTGATGATGTTGAAGAAATTAAAAATCTTGATGAAG
CAACTAAAAAGTTAACACCAATTGGTTGGATTAATGTTATGATTACTGAT
TTTAAATATCAACTTAGACAAGGTATGGTAGAATTATCGTTATGGCCATC
TGATTTTTCAAATCCACTTGGTACTTGCTCAAATAATCCATCAAGTAGTC
AATCAGTTGGTTTAACATTAGAATTTGAAGAATTTAATTTACCAGTTTTA
TTCCCAAGAAAAACTAAATTCTCTACAAGTGTCTCAGTTATTGAACAACC
ACCAACCAATATAAATTCAAATGAAATGAGAGAATTCTTTGAGCAAATTA
CAGCATTAGACCCATTATCAGATTTAAAACAAGAGAAATATAATCAACTT
TGGACTTTAAGACATTATTCAATTTTATTCCCACAAGTTTTACCAAGATT
AATGTTAAGTGTACCATGGACTCAAGCAACCTGCAGTAGATGAAGCAATT
TCATTACTTGATAGATGGCCAAAACTTAAACCTTATGAATCATTGGAATT
ATTGGATGCAAAACATGCAA
Gap no gap
Contig length 620
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1149266
End point 1149886
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03718
List of clone(s) 

est1=SFK353F,1,621
Translated Amino Acid sequence 
DYSNLPVDARLSISVYSANETVDDVEEIKNLDEATKKLTPIGWINVMITDFKYQLRQGMV
ELSLWPSDFSNPLGTCSNNPSSSQSVGLTLEFEEFNLPVLFPRKTKFSTSVSVIEQPPTN
INSNEMREFFEQITALDPLSDLKQEKYNQLWTLRHYSILFPQVLPRLMLSVPWTQATCSR
*snfit**makt*tl*iigiigcktc
Translated Amino Acid sequence (All Frames) 
Frame A:
DYSNLPVDARLSISVYSANETVDDVEEIKNLDEATKKLTPIGWINVMITDFKYQLRQGMV
ELSLWPSDFSNPLGTCSNNPSSSQSVGLTLEFEEFNLPVLFPRKTKFSTSVSVIEQPPTN
INSNEMREFFEQITALDPLSDLKQEKYNQLWTLRHYSILFPQVLPRLMLSVPWTQATCSR
*snfit**makt*tl*iigiigcktc


Frame B:
iiqiyqwmhvyqlvsivqmkqlmmlkklkilmkqlks*hqlvglml*llilninldkvw*
nyryghlifqihlvlaqiihqvvnqlv*h*nlknliyqfysqeklnslqvsqllnnhqpi
*iqmk*enslsklqh*thyqi*nkrniinfgl*diiqfyshkfyqd*c*vyhglkqpavd
eaislldrwpklkpyeslelldakha


Frame C:
lfkftsgctfin*cl*ck*ns**c*rn*ks**sn*kvntnwld*cydy*f*ist*trygr
iivmai*ffkstwyllk*sik*siswfniri*ri*ftsfipkkn*ilykclsy*tttnqy
kfk*neril*anysirpiirfktrei*stldfktlfnfiptsftkinvkctmdssnlq*m
kqfhylidgqnlnlmnhwnywmqnmq
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03718-1 (Contig-U03718-1Q)
/CSM_Contig/Contig-U03718-1Q.Seq.d
         (620 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03718-1 (Contig-U03718-1Q) /CSM_Contig/Conti...  1229  0.0
Contig-U04479-1 (Contig-U04479-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13109-1 (Contig-U13109-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12908-1 (Contig-U12908-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U12680-1 (Contig-U12680-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11642-1 (Contig-U11642-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11132-1 (Contig-U11132-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10839-1 (Contig-U10839-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U04090-1 (Contig-U04090-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14731-1 (Contig-U14731-1Q) /CSM_Contig/Conti...    32  0.68

>Contig-U03718-1 (Contig-U03718-1Q) /CSM_Contig/Contig-U03718-1Q.Seq.d
          Length = 620

 Score = 1229 bits (620), Expect = 0.0
 Identities = 620/620 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattattcaaatttaccagtggatgcacgtttatcaattagtgtctatagtgcaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattattcaaatttaccagtggatgcacgtttatcaattagtgtctatagtgcaaatgaa 60

                                                                       
Query: 61  acagttgatgatgttgaagaaattaaaaatcttgatgaagcaactaaaaagttaacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acagttgatgatgttgaagaaattaaaaatcttgatgaagcaactaaaaagttaacacca 120

                                                                       
Query: 121 attggttggattaatgttatgattactgattttaaatatcaacttagacaaggtatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggttggattaatgttatgattactgattttaaatatcaacttagacaaggtatggta 180

                                                                       
Query: 181 gaattatcgttatggccatctgatttttcaaatccacttggtacttgctcaaataatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaattatcgttatggccatctgatttttcaaatccacttggtacttgctcaaataatcca 240

                                                                       
Query: 241 tcaagtagtcaatcagttggtttaacattagaatttgaagaatttaatttaccagtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaagtagtcaatcagttggtttaacattagaatttgaagaatttaatttaccagtttta 300

                                                                       
Query: 301 ttcccaagaaaaactaaattctctacaagtgtctcagttattgaacaaccaccaaccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcccaagaaaaactaaattctctacaagtgtctcagttattgaacaaccaccaaccaat 360

                                                                       
Query: 361 ataaattcaaatgaaatgagagaattctttgagcaaattacagcattagacccattatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataaattcaaatgaaatgagagaattctttgagcaaattacagcattagacccattatca 420

                                                                       
Query: 421 gatttaaaacaagagaaatataatcaactttggactttaagacattattcaattttattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatttaaaacaagagaaatataatcaactttggactttaagacattattcaattttattc 480

                                                                       
Query: 481 ccacaagttttaccaagattaatgttaagtgtaccatggactcaagcaacctgcagtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccacaagttttaccaagattaatgttaagtgtaccatggactcaagcaacctgcagtaga 540

                                                                       
Query: 541 tgaagcaatttcattacttgatagatggccaaaacttaaaccttatgaatcattggaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgaagcaatttcattacttgatagatggccaaaacttaaaccttatgaatcattggaatt 600

                               
Query: 601 attggatgcaaaacatgcaa 620
           ||||||||||||||||||||
Sbjct: 601 attggatgcaaaacatgcaa 620


>Contig-U04479-1 (Contig-U04479-1Q) /CSM_Contig/Contig-U04479-1Q.Seq.d
          Length = 456

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 attatcagatttaaaacaag 433
           ||||||||||||||||||||
Sbjct: 59  attatcagatttaaaacaag 78


>Contig-U13109-1 (Contig-U13109-1Q) /CSM_Contig/Contig-U13109-1Q.Seq.d
          Length = 639

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 63 agttgatgatgttgaagaa 81
          |||||||||||||||||||
Sbjct: 91 agttgatgatgttgaagaa 73


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,166
Number of Sequences: 6905
Number of extensions: 10166
Number of successful extensions: 1217
Number of sequences better than 10.0: 125
length of query: 620
length of database: 5,674,871
effective HSP length: 16
effective length of query: 604
effective length of database: 5,564,391
effective search space: 3360892164
effective search space used: 3360892164
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 6
Homology vs DNA 
Query= Contig-U03718-1 (Contig-U03718-1Q) /CSM_Contig/Contig-U03718-1Q.Seq.d
         (620 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390224) Dictyostelium discoideum cDNA clone:dds21j13, 5' ...  1229   0.0    1
(U23476) Dictyostelium discoideum phosphatidylinositol-4,5-d...  1051   0.0    2
(EK287237) 1095462317094 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.026  1
(CT030643) Mouse DNA sequence from clone RP23-348M4 on chrom...    50   0.093  4
(AL807393) Mouse DNA sequence from clone RP23-142A9 on chrom...    50   0.10   1
(AC124354) Mus musculus BAC clone RP24-481K12 from 12, compl...    50   0.10   1
(AC100896) Mus musculus clone RP23-69I10, LOW-PASS SEQUENCE ...    50   0.10   1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    50   0.10   1
(AE017308) Mycoplasma mobile 163K complete genome.                 38   0.14   12
(AC155282) Medicago truncatula chromosome 2 clone mth2-63e12...    48   0.40   1
(AC233159) Medicago truncatula clone mth2-124m24, WORKING DR...    48   0.40   1
(EC910608) gmnbbr_0012i12.pDNRm13r Gadus morhua brain librar...    48   0.40   1
(AP010537) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   0.63   4
(AC233494) Solanum tuberosum chromosome 5 clone RH126H02, co...    34   0.85   7
(CK405976) AUF_IfSpn_234_o22 Ictalurus furcatus spleen cDNA ...    42   1.3    2
(AC147618) Mus musculus chromosome 19 clone RP24-245M20, com...    46   1.6    1
(AC141437) Mus musculus BAC clone RP23-283O7 from chromosome...    46   1.6    1
(AZ730360) RPCI-24-65H15.TJ RPCI-24 Mus musculus genomic clo...    46   1.6    1
(FH173142) CHO_OF3391xd07r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.6    1
(ET964954) CHO_OF420xa24r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.6    1
(EJ753392) 1092963053284 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.6    1
(EF924300) Mus musculus C57BL/6N IST12405G1HMF1 gene trap em...    46   1.6    1
(EF918006) Mus musculus C57BL/6N IST12405G1BBF1 gene trap em...    46   1.6    1
(DU720503) pyo59d02.b1 VT847 Caenorhabditis briggsae genomic...    46   1.6    1
(DU601924) OO__Ba0099F22.f OO__Ba Oryza officinalis genomic ...    46   1.6    1
(BI737222) 603358270F1 NIH_MGC_94 Mus musculus cDNA clone IM...    46   1.6    1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    46   1.6    1
(AC145513) Medicago truncatula chromosome 8 clone mth2-26m10...    38   1.6    5
(EC819892) SME00005306 esmbsro2 Sawyeria marylandensis cDNA,...    38   1.8    2
(BQ097060) IfHdk00829 Ictalurus furcatus head kidney cDNA li...    42   2.1    2
(AP010336) Lotus japonicus genomic DNA, chromosome 2, clone:...    32   2.2    5
(CD147115) ML1-0002T-M115-B08-U.G ML1-0002 Schistosoma manso...    40   2.3    2
(ER545114) 1093016163826 Global-Ocean-Sampling_GS-35-01-01-1...    42   2.8    2
(AL772140) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   2.8    7
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   2.8    6
(CU928943) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.0    2
(CU856413) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.1    2
(AM759808) Ephydatia muelleri EST, 5' end sequence, clone IL...    42   3.1    2
(EK308145) 1095462387665 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.7    3
(CE513845) tigr-gss-dog-17000327396304 Dog Library Canis lup...    34   4.2    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   4.4    7
(AL356117) Human DNA sequence from clone RP11-258G21 on chro...    32   5.4    7
(X92179) S.tuberosum mRNA for alcohol dehydrogenase.               44   6.3    1
(AM477183) Vitis vinifera contig VV78X063319.43, whole genom...    44   6.3    1
(AL391710) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    44   6.3    1
(AC212301) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    44   6.3    1
(AC194694) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    44   6.3    1
(AC023064) Arabidopsis thaliana chromosome 1 BAC F12A4 genom...    44   6.3    1
(AR779162) Sequence 2 from patent US 6949694.                      44   6.3    1
(U04712) Caenorhabditis elegans N2 alternatively spliced (un...    44   6.3    1
(AF106590) Caenorhabditis elegans cosmid F08B6, complete seq...    44   6.3    1
(AC006203) Homo sapiens chromosome 18, clone hRPK.453_M_1, c...    44   6.3    1
(FP085587) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(CU582831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(CU463274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(AC223069) Bos taurus clone CH240-430K12, WORKING DRAFT SEQU...    44   6.3    1
(AC167106) Sorex araneus clone SA_Ba-359B10, WORKING DRAFT S...    44   6.3    1
(FI020391) CHO_OF6927xm13r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.3    1
(FI020314) CHO_OF6927xm13f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.3    1
(FH602316) CHO_OF4644xo06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.3    1
(FH170652) CHO_OF3385xf01f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.3    1
(ER470487) 1092963951094 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.3    1
(ER438483) 1092963804853 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.3    1
(EJ986158) 1093023012482 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ975438) 1093022114627 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ889279) 1093018433669 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ863783) 1093018235139 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.3    1
(EJ548401) 1092959421510 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.3    1
(EJ533056) 1092955242172 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.3    1
(EJ529466) 1092955212056 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.3    1
(EJ521641) 1092955146834 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.3    1
(EJ496525) 1095403578167 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.3    1
(EJ433582) 1093015268493 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.3    1
(EJ407356) 1093012106307 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.3    1
(EJ282802) 1095368001263 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.3    1
(EJ230209) 1092402575836 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.3    1
(EJ126374) 1092343395330 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.3    1
(EI790553) CHORI518016M10TR BAC library from the breast cell...    44   6.3    1
(DU698313) Bst030843 lambda03 Boechera stricta genomic clone...    44   6.3    1
(DE199211) Branchiostoma floridae DNA, clone: CH302-083_N07_...    44   6.3    1
(CC819391) 1O0006N02F Oxytricha plasmid UUGC1O library Sterk...    44   6.3    1
(CC816592) 1O0002I07F Oxytricha plasmid UUGC1O library Sterk...    44   6.3    1
(AU208961) Caenorhabditis elegans cDNA clone:yk1000e10 : 5' ...    44   6.3    1
(AU208570) Caenorhabditis elegans cDNA clone:yk895g04 : 5' e...    44   6.3    1
(CU623683) Theobroma cacao, mRNA sequence (KZ0ABE11YO01FM1).       44   6.3    1
(CU620101) Theobroma cacao, mRNA sequence (KZ0AAA2YP05FM1).        44   6.3    1
(CU522259) Theobroma cacao, mRNA sequence (KZ0ACAM1YL03FM1).       44   6.3    1
(CU512094) Theobroma cacao, mRNA sequence (KZ0ACN3YG12FM1).        44   6.3    1
(CN956824) 4324_50012_33 Fundulus Heteroclitus Heart Fundulu...    44   6.3    1
(CK582239) IST_WI5_40351 AD-wrmcDNA library Caenorhabditis e...    44   6.3    1
(CK582236) IST_WI5_40347 AD-wrmcDNA library Caenorhabditis e...    44   6.3    1
(CK577651) IST_WI5_17736 AD-wrmcDNA library Caenorhabditis e...    44   6.3    1
(CK577644) IST_WI5_17728 AD-wrmcDNA library Caenorhabditis e...    44   6.3    1
(CK577617) IST_WI5_17614 AD-wrmcDNA library Caenorhabditis e...    44   6.3    1
(CB391561) OSTF153F2_2 AD-wrmcDNA Caenorhabditis elegans cDN...    44   6.3    1
(CB391528) OSTF153F2_1 AD-wrmcDNA Caenorhabditis elegans cDN...    44   6.3    1
(CB102482) MWV_SQ009@F9 AD-wrmcDNA Caenorhabditis elegans cD...    44   6.3    1
(BM170665) EST573188 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.3    1
(BM159243) EST561766 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.3    1
(BJ770003) Caenorhabditis elegans cDNA clone:yk1701a07 : 5' ...    44   6.3    1
(BJ758593) Caenorhabditis elegans cDNA clone:yk1516d03 : 5' ...    44   6.3    1
(BJ126182) Caenorhabditis elegans cDNA clone:yk1332b05 : 5' ...    44   6.3    1
(AA859002) UI-R-A0-bi-c-09-0-UI.s1 UI-R-A0 Rattus norvegicus...    44   6.3    1
(FG152479) AGN_RNC108xl20f1.ab1 AGN_RNC Nicotiana tabacum cD...    44   6.3    1
(Z33005) M.capricolum DNA for CONTIG MC002.                        44   6.3    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   6.3    1
(AM481871) Vitis vinifera contig VV78X021580.27, whole genom...    36   8.5    4

>(BJ390224) Dictyostelium discoideum cDNA clone:dds21j13, 5' end,
           single read.
          Length = 621

 Score = 1229 bits (620), Expect = 0.0
 Identities = 620/620 (100%)
 Strand = Plus / Plus


Query: 1   gattattcaaatttaccagtggatgcacgtttatcaattagtgtctatagtgcaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattattcaaatttaccagtggatgcacgtttatcaattagtgtctatagtgcaaatgaa 60


Query: 61  acagttgatgatgttgaagaaattaaaaatcttgatgaagcaactaaaaagttaacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acagttgatgatgttgaagaaattaaaaatcttgatgaagcaactaaaaagttaacacca 120


Query: 121 attggttggattaatgttatgattactgattttaaatatcaacttagacaaggtatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggttggattaatgttatgattactgattttaaatatcaacttagacaaggtatggta 180


Query: 181 gaattatcgttatggccatctgatttttcaaatccacttggtacttgctcaaataatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaattatcgttatggccatctgatttttcaaatccacttggtacttgctcaaataatcca 240


Query: 241 tcaagtagtcaatcagttggtttaacattagaatttgaagaatttaatttaccagtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaagtagtcaatcagttggtttaacattagaatttgaagaatttaatttaccagtttta 300


Query: 301 ttcccaagaaaaactaaattctctacaagtgtctcagttattgaacaaccaccaaccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcccaagaaaaactaaattctctacaagtgtctcagttattgaacaaccaccaaccaat 360


Query: 361 ataaattcaaatgaaatgagagaattctttgagcaaattacagcattagacccattatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataaattcaaatgaaatgagagaattctttgagcaaattacagcattagacccattatca 420


Query: 421 gatttaaaacaagagaaatataatcaactttggactttaagacattattcaattttattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatttaaaacaagagaaatataatcaactttggactttaagacattattcaattttattc 480


Query: 481 ccacaagttttaccaagattaatgttaagtgtaccatggactcaagcaacctgcagtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccacaagttttaccaagattaatgttaagtgtaccatggactcaagcaacctgcagtaga 540


Query: 541 tgaagcaatttcattacttgatagatggccaaaacttaaaccttatgaatcattggaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgaagcaatttcattacttgatagatggccaaaacttaaaccttatgaatcattggaatt 600


Query: 601 attggatgcaaaacatgcaa 620
           ||||||||||||||||||||
Sbjct: 601 attggatgcaaaacatgcaa 620

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 828,657,611
Number of extensions: 49933695
Number of successful extensions: 4080606
Number of sequences better than 10.0: 107
Length of query: 620
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 597
Effective length of database: 99,442,330,388
Effective search space: 59367071241636
Effective search space used: 59367071241636
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03718-1 (Contig-U03718-1Q) /CSM_Contig/Contig-U03718-1Q.Seq.d
         (620 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54673) RecName: Full=Phosphatidylinositol 3-kinase 1;         ...   358   e-110
AY335688_1(AY335688|pid:none) Synthetic construct Homo sapiens p...    89   2e-19
CR858361_1(CR858361|pid:none) Pongo abelii mRNA; cDNA DKFZp459O2...    89   2e-19
(Q9Z1L0) RecName: Full=Phosphatidylinositol-4,5-bisphosphate 3-k...    87   5e-19
AK154106_1(AK154106|pid:none) Mus musculus NOD-derived CD11c +ve...    86   2e-18
BC089038_1(BC089038|pid:none) Mus musculus phosphatidylinositol ...    85   2e-17
(P42337) RecName: Full=Phosphatidylinositol-4,5-bisphosphate 3-k...    84   3e-17
(P42336) RecName: Full=Phosphatidylinositol-4,5-bisphosphate 3-k...    84   3e-17
AY335705_1(AY335705|pid:none) Synthetic construct Homo sapiens p...    84   3e-17
AK292940_1(AK292940|pid:none) Homo sapiens cDNA FLJ75190 complet...    84   3e-17
BC158187_1(BC158187|pid:none) Xenopus tropicalis hypothetical pr...    83   5e-17
AF001076_1(AF001076|pid:none) Gallus gallus phosphoinositide 3-k...    83   6e-17
AF204924_1(AF204924|pid:none) Xenopus laevis phosphoinositide 3 ...    79   8e-16
BC122988_1(BC122988|pid:none) Xenopus tropicalis phosphoinositid...    79   2e-15
(P54674) RecName: Full=Phosphatidylinositol 3-kinase 2;         ...    71   4e-14
BC054896_1(BC054896|pid:none) Danio rerio phosphoinositide-3-kin...    71   7e-14
AF532989_1(AF532989|pid:none) Mus musculus phosphoinositide 3 ki...    67   2e-11
AK303425_1(AK303425|pid:none) Homo sapiens cDNA FLJ51430 complet...    67   2e-11
AK171025_1(AK171025|pid:none) Mus musculus NOD-derived CD11c +ve...    67   4e-11
DQ263596_1(DQ263596|pid:none) Homo sapiens phosphoinositide-3-ki...    66   4e-11
(O00329) RecName: Full=Phosphatidylinositol-4,5-bisphosphate 3-k...    66   4e-11
AX287052_1(AX287052|pid:none) Sequence 1 from Patent WO0181346. ...    66   4e-11
AK314191_1(AK314191|pid:none) Homo sapiens cDNA, FLJ94916, highl...    66   4e-11
BC150297_1(BC150297|pid:none) Homo sapiens phosphoinositide-3-ki...    66   4e-11
(P54675) RecName: Full=Phosphatidylinositol 3-kinase 3;         ...    59   5e-11
AC116305_49(AC116305|pid:none) Dictyostelium discoideum chromoso...    59   5e-11
BC144264_1(BC144264|pid:none) Homo sapiens phosphoinositide-3-ki...    65   5e-11
AL607078_4(AL607078|pid:none) Mouse DNA sequence from clone RP23...    65   8e-11
AK172222_1(AK172222|pid:none) Mus musculus activated spleen cDNA...    65   2e-10
AB208835_1(AB208835|pid:none) Homo sapiens mRNA for phosphoinosi...    63   2e-10
BC057425_1(BC057425|pid:none) Danio rerio zgc:77033, mRNA (cDNA ...    65   1e-09
AX327655_1(AX327655|pid:none) Sequence 9 from Patent WO0185986. ...    63   6e-09
AF327656_1(AF327656|pid:none) Homo sapiens phosphoinositide-3-ki...    63   6e-09
AY888076_1(AY888076|pid:none) Synthetic construct Homo sapiens c...    63   6e-09
AM502232_2(AM502232|pid:none) Leishmania infantum chromosome 14.       53   7e-09
EF043821_1(EF043821|pid:none) Synthetic construct clone ATCC 103...    61   2e-08
AK137470_1(AK137470|pid:none) Mus musculus adult male bone cDNA,...    61   2e-08
AK132553_1(AK132553|pid:none) Mus musculus 0 day neonate head cD...    61   2e-08
(Q9JHG7) RecName: Full=Phosphatidylinositol-4,5-bisphosphate 3-k...    61   2e-08
AF208345_1(AF208345|pid:none) Mus musculus phosphatidylinositol ...    61   2e-08
BC149468_1(BC149468|pid:none) Bos taurus phosphoinositide-3-kina...    60   5e-08
AK292684_1(AK292684|pid:none) Homo sapiens cDNA FLJ77260 complet...    60   5e-08
AK293754_1(AK293754|pid:none) Homo sapiens cDNA FLJ57102 complet...    49   1e-07
AK294416_1(AK294416|pid:none) Homo sapiens cDNA FLJ53905 complet...    45   1e-06
A89694_1(A89694|pid:none) Sequence 1 from Patent WO9832864.  &Y1...    44   2e-06
(Q61194) RecName: Full=Phosphatidylinositol-4-phosphate 3-kinase...    42   3e-06
T42642(T42642) phosphoinositide 3-kinase (EC 2.7.1.-) - mouse  &...    42   3e-06
U55772_1(U55772|pid:none) Mus musculus p170 phosphatidylinositol...    42   3e-06
AK150649_1(AK150649|pid:none) Mus musculus bone marrow macrophag...    54   3e-06
AK151482_1(AK151482|pid:none) Mus musculus bone marrow macrophag...    54   3e-06
AL691449_4(AL691449|pid:none) Human DNA sequence from clone RP11...    52   1e-05
(P0C5E7) RecName: Full=Phosphatidylinositol 3-kinase age-1;     ...    49   1e-04
FN357724_13(FN357724|pid:none) Schistosoma mansoni genome sequen...    40   0.041
T13801(T13801;T13351) phosphoinositide 3-kinase (EC 2.7.-.-) - f...    40   0.054
U52192_1(U52192|pid:none) Drosophila melanogaster phosphoinositi...    40   0.054
T52538(T52538;PC4002) 1-phosphatidylinositol 3-kinase (EC 2.7.1....    32   0.082
(P50520) RecName: Full=Phosphatidylinositol 3-kinase vps34;     ...    32   0.11
BC168571_1(BC168571|pid:none) Xenopus tropicalis phosphoinositid...    34   0.13
S71792(S71792;T31476;T18707)phosphatidylinositol-3-OH kinase AGE...    38   0.20
AL110499_1(AL110499|pid:none) Caenorhabditis elegans YAC Y62F5A,...    38   0.20
JC5500(JC5500) phosphoinositide 3-kinase (EC 2.7.1.-) - human  &...    38   0.27
Y13892_1(Y13892|pid:none) Homo sapiens mRNA for PI-3 kinase.           38   0.27
AB210006_1(AB210006|pid:none) Homo sapiens mRNA for PIK3C2B vari...    38   0.27
EU334166_1(EU334166|pid:none) Gallus gallus gallus clone GGA38_G...    36   0.77
CP000962_1520(CP000962|pid:none) Clostridium botulinum A3 str. L...    35   1.3
FN357583_17(FN357583|pid:none) Schistosoma mansoni genome sequen...    35   2.2
CP001083_1450(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   3.8
CP000412_1224(CP000412|pid:none) Lactobacillus delbrueckii subsp...    33   5.0
CP000939_1444(CP000939|pid:none) Clostridium botulinum B1 str. O...    33   5.0
CP000728_1410(CP000728|pid:none) Clostridium botulinum F str. La...    33   5.0
BA000026_447(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   5.0
AM412317_1420(AM412317|pid:none) Clostridium botulinum A str. AT...    33   5.0
DQ267496_8(DQ267496|pid:none) Uncultured delta proteobacterium D...    33   5.0
AP007167_364(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...    31   6.0
L10990_3(L10990|pid:none) Caenorhabditis elegans cosmid C30A5, c...    33   6.5
L10990_4(L10990|pid:none) Caenorhabditis elegans cosmid C30A5, c...    33   6.5
AJ414167_1(AJ414167|pid:none) Nicotiana tabacum ORF1, ORF2, ORF3...    33   8.5
AK165855_1(AK165855|pid:none) Mus musculus lung RCB-0558 LLC cDN...    33   8.5
AJ249130_2(AJ249130|pid:none) Rhizobium meliloti rkpY gene and p...    33   8.5
AM849044_5(AM849044|pid:none) Sinorhizobium meliloti plasmid pRm...    33   8.5
AJ238747_1(AJ238747|pid:none) Nicotiana tabacum pararetrovirus-l...    33   8.5

>(P54673) RecName: Full=Phosphatidylinositol 3-kinase 1;
            Short=PtdIns-3-kinase;          Short=PI3-kinase;
             Short=PI3K;          EC=2.7.1.137;
          Length = 1571

 Score =  358 bits (920), Expect(2) = e-110
 Identities = 177/177 (100%), Positives = 177/177 (100%)
 Frame = +1

Query: 1    DYSNLPVDARLSISVYSANETVDDVEEIKNLDEATKKLTPIGWINVMITDFKYQLRQGMV 180
            DYSNLPVDARLSISVYSANETVDDVEEIKNLDEATKKLTPIGWINVMITDFKYQLRQGMV
Sbjct: 925  DYSNLPVDARLSISVYSANETVDDVEEIKNLDEATKKLTPIGWINVMITDFKYQLRQGMV 984

Query: 181  ELSLWPSDFSNPLGTCSNNPSSSQSVGLTLEFEEFNLPVLFPRKTKFSTSVSVIEQPPTN 360
            ELSLWPSDFSNPLGTCSNNPSSSQSVGLTLEFEEFNLPVLFPRKTKFSTSVSVIEQPPTN
Sbjct: 985  ELSLWPSDFSNPLGTCSNNPSSSQSVGLTLEFEEFNLPVLFPRKTKFSTSVSVIEQPPTN 1044

Query: 361  INSNEMREFFEQITALDPLSDLKQEKYNQLWTLRHYSILFPQVLPRLMLSVPWTQAT 531
            INSNEMREFFEQITALDPLSDLKQEKYNQLWTLRHYSILFPQVLPRLMLSVPWTQAT
Sbjct: 1045 INSNEMREFFEQITALDPLSDLKQEKYNQLWTLRHYSILFPQVLPRLMLSVPWTQAT 1101

 Score = 62.0 bits (149), Expect(2) = e-110
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +2

Query: 533  AVDEAISLLDRWPKLKPYESLELLDAKHA 619
            AVDEAISLLDRWPKLKPYESLELLDAKHA
Sbjct: 1102 AVDEAISLLDRWPKLKPYESLELLDAKHA 1130

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 921,224,745
Number of extensions: 17115152
Number of successful extensions: 45378
Number of sequences better than 10.0: 81
Number of HSP's gapped: 45303
Number of HSP's successfully gapped: 123
Length of query: 206
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 83
Effective length of database: 659,166,577
Effective search space: 54710825891
Effective search space used: 54710825891
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03718-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0