Contig-U03703-1
Contig ID Contig-U03703-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03703-1 (Contig-U03703-1Q) /CSM_Contig/Contig-U03703-1Q.Seq.d
CCTACTGGAAAAACAAAATACACACTCACACGCTCGCACCACCATATAAA
TTTATTTATATTTTATAATATAAAAAACTCAACTGAATAATTTCACCACA
CACCTTCACATATTTAAACTGCATAATAAATTATATTAATAAAAAAAAA

Gap no gap
Contig length 149
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1227098
End point 1227238
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U03703
List of clone(s)

est1=SFK161F,1,150
est2=SFK113F,9,150
Translated Amino Acid sequence
PTGKTKYTLTRSHHHINLFIFYNIKNSTE*fhhtpshi*ta**iilikk


Translated Amino Acid sequence (All Frames)
Frame A:
PTGKTKYTLTRSHHHINLFIFYNIKNSTE*fhhtpshi*ta**iilikk


Frame B:
llekqnthshartti*iylyfii*ktqlnnftthlhifklhnkly**kk


Frame C:
ywknkihthtlappykfiyil*ykkln*iisphtftylnciinyinkkk


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03703-1 (Contig-U03703-1Q)
/CSM_Contig/Contig-U03703-1Q.Seq.d
(149 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03703-1 (Contig-U03703-1Q) /CSM_Contig/Conti... 278 2e-75
Contig-U10462-1 (Contig-U10462-1Q) /CSM_Contig/Conti... 36 0.010
Contig-U05164-1 (Contig-U05164-1Q) /CSM_Contig/Conti... 36 0.010
Contig-U03282-1 (Contig-U03282-1Q) /CSM_Contig/Conti... 36 0.010
Contig-U13958-1 (Contig-U13958-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U11265-1 (Contig-U11265-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U05464-1 (Contig-U05464-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U04927-1 (Contig-U04927-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti... 34 0.038

>Contig-U03703-1 (Contig-U03703-1Q) /CSM_Contig/Contig-U03703-1Q.Seq.d
Length = 149

Score = 278 bits (140), Expect = 2e-75
Identities = 140/140 (100%)
Strand = Plus / Plus


Query: 1 cctactggaaaaacaaaatacacactcacacgctcgcaccaccatataaatttatttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctactggaaaaacaaaatacacactcacacgctcgcaccaccatataaatttatttata 60


Query: 61 ttttataatataaaaaactcaactgaataatttcaccacacaccttcacatatttaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttataatataaaaaactcaactgaataatttcaccacacaccttcacatatttaaact 120


Query: 121 gcataataaattatattaat 140
||||||||||||||||||||
Sbjct: 121 gcataataaattatattaat 140


>Contig-U10462-1 (Contig-U10462-1Q) /CSM_Contig/Contig-U10462-1Q.Seq.d
Length = 141

Score = 36.2 bits (18), Expect = 0.010
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 42 ccatataaatttatttat 59
||||||||||||||||||
Sbjct: 24 ccatataaatttatttat 41


>Contig-U05164-1 (Contig-U05164-1Q) /CSM_Contig/Contig-U05164-1Q.Seq.d
Length = 450

Score = 36.2 bits (18), Expect = 0.010
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 14 caaaatacacactcacac 31
||||||||||||||||||
Sbjct: 300 caaaatacacactcacac 317


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4868
Number of Sequences: 6905
Number of extensions: 4868
Number of successful extensions: 1816
Number of sequences better than 10.0: 645
length of query: 149
length of database: 5,674,871
effective HSP length: 15
effective length of query: 134
effective length of database: 5,571,296
effective search space: 746553664
effective search space used: 746553664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2009. 6. 5
Homology vs DNA
Query= Contig-U03703-1 (Contig-U03703-1Q) /CSM_Contig/Contig-U03703-1Q.Seq.d
(149 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ390221) Dictyostelium discoideum cDNA clone:dds21i15, 5' ... 278 5e-71 1
(BJ390078) Dictyostelium discoideum cDNA clone:dds21i03, 5' ... 262 3e-66 1
(CG747942) P041-3-G01.ya Ppa EcoRI BAC Library Pristionchus ... 34 0.002 3
(BX537335) Zebrafish DNA sequence from clone DKEYP-84G9 in l... 52 0.005 1
(BX322531) Zebrafish DNA sequence from clone CH211-279A13 in... 52 0.005 1
(AL928728) Zebrafish DNA sequence from clone CH211-212E24. 52 0.005 1
(CZ935441) 254543 Tomato EcoRI BAC Library Solanum lycopersi... 52 0.005 1
(AC131720) Mus musculus BAC clone RP23-137I3 from chromosome... 38 0.010 3
(L36887) Saccharomyces cerevisiae mitochondrion transfer RNA... 44 0.012 3
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 44 0.013 2
(EV813106) 030207FAAD006573HT (FAAD) Epiphyas postvittana ma... 42 0.019 2
(AC160121) Mus musculus BAC clone RP23-402P14 from chromosom... 50 0.022 1
(AC155302) Mus musculus BAC clone RP24-227A11 from chromosom... 50 0.022 1
(DQ496171) Zygozyma oligophaga strain CBS 7107 small subunit... 50 0.022 1
(AC232445) Brassica rapa subsp. pekinensis clone KBrB006F18,... 50 0.022 1
(AZ419994) 1M0196B17R Mouse 10kb plasmid UUGC1M library Mus ... 50 0.022 1
(AG526033) Mus musculus molossinus DNA, clone:MSMg01-434I02.... 32 0.025 3
(EF050183) Theridiinae sp. 101A 16S ribosomal RNA gene, part... 36 0.027 2
(EV803509) 010322FABA001448HT (FABA) Epiphyas postvittana 3r... 42 0.028 2
(EV812865) 030121FAAD006176HT (FAAD) Epiphyas postvittana ma... 42 0.029 2
(AC221357) Bos taurus clone CH240-404G4, WORKING DRAFT SEQUE... 40 0.029 2
(EV809930) 030115FAAD002417HT (FAAD) Epiphyas postvittana ma... 42 0.030 2
(EV803387) 010322FABA001198HT (FABA) Epiphyas postvittana 3r... 42 0.031 2
(EV804602) 010529FABA003750HT (FABA) Epiphyas postvittana 3r... 42 0.031 2
(EV803388) 010322FABA001199HT (FABA) Epiphyas postvittana 3r... 42 0.032 2
(EV810425) 030116FAAD002202HT (FAAD) Epiphyas postvittana ma... 42 0.032 2
(EV804369) 010528FABA005637HT (FABA) Epiphyas postvittana 3r... 42 0.032 2
(EV811627) 030120FAAD004457HT (FAAD) Epiphyas postvittana ma... 42 0.033 2
(EV804750) 010529FABA005892HT (FABA) Epiphyas postvittana 3r... 42 0.033 2
(EV806332) 010529FABA003551HT (FABA) Epiphyas postvittana 3r... 42 0.034 2
(EV804636) 010529FABA004238HT (FABA) Epiphyas postvittana 3r... 42 0.035 2
(EV812581) 030121FAAD005758HT (FAAD) Epiphyas postvittana ma... 42 0.035 2
(EV812512) 030121FAAD005669HT (FAAD) Epiphyas postvittana ma... 42 0.035 2
(EV804196) 010526FABA003627HT (FABA) Epiphyas postvittana 3r... 42 0.037 2
(EV811408) 030117FAAD004165HT (FAAD) Epiphyas postvittana ma... 42 0.037 2
(EV810158) 030115FAAD002752HT (FAAD) Epiphyas postvittana ma... 42 0.038 2
(EV809860) 021212FAAD001876HT (FAAD) Epiphyas postvittana ma... 42 0.038 2
(EV812083) 030120FAAD005091HT (FAAD) Epiphyas postvittana ma... 42 0.039 2
(EV804791) 010529FABA005956HT (FABA) Epiphyas postvittana 3r... 42 0.039 2
(FF333152) 280451309 Pea aphid whole body normalized full le... 38 0.042 2
(L36890) Saccharomyces cerevisiae mitochondrion transfer RNA... 36 0.044 3
(CO930994) AGENCOURT_30564829 NIH_ZGC_19 Danio rerio cDNA cl... 36 0.044 2
(DQ377079) Ophyra aenescens isolate Oa01Ssp tRNA-Met gene, p... 42 0.046 2
(DJ386681) Diagnosis of Diseases Associated with Metastasis. 36 0.046 4
(AX348827) Sequence 285 from Patent WO0202807. 36 0.046 4
(AX281477) Sequence 141 from Patent WO0177376. 36 0.046 4
(AX344893) Sequence 318 from Patent WO0200927. 32 0.048 4
(EU569764) Phthonandria atrilineata mitochondrion, complete ... 44 0.049 2
(CU179656) Zebrafish DNA sequence from clone CH211-204J14. 46 0.050 5
(EU877950) Sphaerius sp. BT0074 mitochondrion, complete genome. 42 0.054 3
(AY341443) Phaseolus vulgaris cultivar Sprite BAC 78L17, par... 34 0.055 2
(AC162197) Bos taurus clone CH240-115D11, WORKING DRAFT SEQU... 40 0.057 5
(EY112974) CAZI8115.fwd CAZI Artemisia annua normalized leaf... 34 0.067 2
(EI473342) PV_GBa0082M20.f PV_GBa Phaseolus vulgaris genomic... 32 0.077 3
(DB911357) Idiosepius paradoxus cDNA, clone:Ip_aB_002_B17, 5... 38 0.084 2
(CR394543) Zebrafish DNA sequence from clone DKEY-26A2 in li... 48 0.086 1
(BX927292) Zebrafish DNA sequence from clone CH211-197O22 in... 48 0.086 1
(AC154911) Mus musculus BAC clone RP23-25I3 from chromosome ... 48 0.086 1
(AC140347) Mus musculus BAC clone RP23-233K3 from chromosome... 48 0.086 1
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 48 0.086 1
(AC007559) Homo sapiens BAC clone RP11-364J6 from 2, complet... 48 0.086 1
(AL137126) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.086 1
(AC217247) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 48 0.086 1
(BH034995) RPCI-24-369G8.TJ RPCI-24 Mus musculus genomic clo... 48 0.086 1
(DX535181) GH_MBb0042C04r GH_MBb Gossypium hirsutum genomic ... 48 0.086 1
(CJ367501) Molgula tectiformis cDNA, gastrula/neurula clone:... 48 0.086 1
(CD390192) AGENCOURT_14346104 NIH_MGC_173 Homo sapiens cDNA ... 48 0.086 1
(FM237993) Mycosphaerella graminicola EST, clone 22946. 48 0.086 1
(AZ131173) OSJNBb0105M23f CUGI Rice BAC Library (EcoRI) Oryz... 36 0.11 3
(BZ523921) BOKAE60TF BO_10_15_KB_nuc Brassica oleracea genom... 40 0.12 2
(BX502569) Homo sapiens mRNA; EST DKFZp779N0369_r1 (from cl... 42 0.12 2
(AC166581) Bos taurus clone CH240-76J4, WORKING DRAFT SEQUEN... 34 0.15 4
(EI423805) PV_GBa0013C16.r PV_GBa Phaseolus vulgaris genomic... 32 0.17 3
(AM470870) Vitis vinifera contig VV78X003863.7, whole genome... 36 0.19 2
(AC109802) Canis lupus familiaris clone RP81-271O24, WORKING... 38 0.19 3
(CU442741) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.20 2
(CU861578) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.20 2
(AL356580) Human DNA sequence from clone RP11-383H17 on chro... 36 0.20 2
(DX558389) GH_MBb0021L06f GH_MBb Gossypium hirsutum genomic ... 36 0.21 2
(AE001410) Plasmodium falciparum 3D7 chromosome 2 section 47... 36 0.21 3
(EY792929) CR05-C3-700-148-E01-CT.F Mandarin fruit, developm... 28 0.22 3
(AC165114) Bos taurus clone CH240-162A9, WORKING DRAFT SEQUE... 42 0.23 5
(AY947398) Aedes aegypti haplotype 1 tRNA-Ile gene, partial ... 38 0.24 2
(AY947399) Aedes aegypti haplotype 19 tRNA-Ile gene, partial... 38 0.24 2
(AY356401) Aedes aegypti AT-rich direct repeat and tRNA-Ile ... 38 0.25 2
(CT331272) Sus scrofa genomic clone CH242-387E1, genomic sur... 32 0.25 2
(BX323868) Zebrafish DNA sequence from clone CH211-276H18 in... 32 0.25 6
(EI920211) VUH2-49P9TR VUUBBa (VUH2) Vigna unguiculata genom... 36 0.26 2
(DN656330) CEC22-E04.x1d-t SHGC-CEC Gasterosteus aculeatus c... 40 0.26 2
(CG757678) P053-1-B05.zb Ppa EcoRI BAC Library Pristionchus ... 44 0.29 2
(V00693) cap-oxi1 genes of yeast mitochondrion. 44 0.29 2
(AC005780) Homo sapiens chromosome 19, cosmid F23049, comple... 42 0.33 3
(AM483157) Vitis vinifera, whole genome shotgun sequence, co... 42 0.33 2
(AC123735) Mus musculus chromosome 15, clone RP23-478A10, co... 40 0.34 4
(BX936345) Zebrafish DNA sequence from clone DKEY-118M15 in ... 46 0.34 1
(AL929404) Mouse DNA sequence from clone RP23-71H9 on chromo... 46 0.34 1
(AY863212) Rhizopus oryzae mitochondrion, complete genome. 46 0.34 1
(AM448209) Vitis vinifera contig VV78X037765.16, whole genom... 46 0.34 1
(AY573104) Piophila nigriceps 12S ribosomal RNA gene, partia... 46 0.34 1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 46 0.34 1
(AC162546) Bos taurus clone CH240-122I19, WORKING DRAFT SEQU... 46 0.34 1
(AC152681) Bos taurus clone CH240-10O23, WORKING DRAFT SEQUE... 46 0.34 1
(AC134469) Mus musculus chromosome UNK clone RP23-107C23, WO... 46 0.34 1
(AC123500) Rattus norvegicus clone CH230-118H3, WORKING DRAF... 46 0.34 1
(AC097288) Rattus norvegicus clone CH230-28A10, WORKING DRAF... 46 0.34 1
(AC095732) Rattus norvegicus clone CH230-9A18, *** SEQUENCIN... 46 0.34 1
(AC219959) Bos taurus clone CH240-318A12, WORKING DRAFT SEQU... 46 0.34 1
(AC182949) Bos taurus clone CH240-279N19, WORKING DRAFT SEQU... 46 0.34 1
(AC175486) Bos taurus clone CH240-210G24, WORKING DRAFT SEQU... 46 0.34 1
(BH463471) BOGYZ47TR BOGY Brassica oleracea genomic clone BO... 46 0.34 1
(FH833735) OSB_1255001xl01f1.ab1 OSB_1255 Nicotiana tabacum ... 46 0.34 1
(FH832831) OSB_1255004xj22f1.ab1 OSB_1255 Nicotiana tabacum ... 46 0.34 1
(FH825884) OSB_1251006xb24r1.ab1 OSB_1251 Nicotiana tabacum ... 46 0.34 1
(FH825743) OSB_1251006xb01f1.ab1 OSB_1251 Nicotiana tabacum ... 46 0.34 1
(FH825328) OSB_1251007xf19f1.ab1 OSB_1251 Nicotiana tabacum ... 46 0.34 1
(FH824681) OSB_1251005xk04r1.ab1 OSB_1251 Nicotiana tabacum ... 46 0.34 1
(FH184473) CHO_OF3426xj08f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 0.34 1
(ET072034) QM0AAA6BE04RM1 CCL1 Citrus clementina genomic clo... 46 0.34 1
(DH447533) Macropus eugenii DNA with T7 primer, fosmid clone... 46 0.34 1
(AG711420) Macaca fuscata fuscata DNA, clone: MSB2-157F07_F,... 46 0.34 1
(BZ397094) EINBT14TR EI_10_12_KB Entamoeba invadens genomic ... 46 0.34 1
(BZ396027) EINBY76TF EI_10_12_KB Entamoeba invadens genomic ... 46 0.34 1
(AG038760) Pan troglodytes DNA, clone: PTB-015K14.R. 46 0.34 1
(CJ453922) Macaca fascicularis mRNA, clone: QflA-19641, 5' e... 46 0.34 1
(BB982751) Bombyx mori mRNA, EST clone:ovS3011A12r, 3' end s... 46 0.34 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 46 0.34 1
(DX547029) GH_MBb0090D01f GH_MBb Gossypium hirsutum genomic ... 30 0.37 3
(AL645770) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 0.37 3
(CR847891) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.40 5
(DR411773) gPGC_EST01615 Embryonic gonadal PGC cDNA Library ... 32 0.41 3
(DX583697) MUGQ_CH252P053G22T7_AV1046_089 CHORI-252 Vervet M... 34 0.42 3
(AX392733) Sequence 23 from Patent WO0212526. 32 0.43 5
(AR707080) Sequence 23 from patent US 6933145. 32 0.43 5
(U87145) Toxoplasma gondii chloroplast, complete genome. 34 0.43 5
(EU124736) Solanum lycopersicum chromosome 3 clone C03HBa014... 34 0.44 4
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.48 6
(AC100708) Mus musculus chromosome 10, clone RP23-169I18, co... 44 0.48 2
(CT030141) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.51 6
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 34 0.51 4
(EI478384) PV_GBa0089P01.r PV_GBa Phaseolus vulgaris genomic... 32 0.52 3
(EV812118) 030120FAAD005142HT (FAAD) Epiphyas postvittana ma... 42 0.57 2
(AM432305) Vitis vinifera contig VV78X237792.9, whole genome... 32 0.58 3
(EX613268) 255383050 Pea aphid whole body normalized full le... 36 0.58 2
(CL865677) t4m03be.f1 TAMBT Bos taurus genomic clone t4m03be... 36 0.59 2
(FM223295) Mycosphaerella graminicola EST, clone 08248. 42 0.59 2
(ED746053) GM_WBb0110C24.f GM_WBb Glycine max genomic clone ... 40 0.60 2
(B12681) F27D1-Sp6.1 IGF Arabidopsis thaliana genomic clone ... 34 0.61 2
(CL491655) SAIL_559_D09.v3 SAIL Collection Arabidopsis thali... 34 0.62 2
(FP067402) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.63 3
(FI162468) MUGQ_CH252P007G16T7_CH0264_058 CHORI-252 Vervet M... 34 0.66 3
(EK323726) 1095462437889 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.67 2
(DQ102703) Coreana raphaelis mitochondrion, complete genome. 40 0.69 3
(CL485944) SAIL_425_F09.v1 SAIL Collection Arabidopsis thali... 30 0.71 3
(AC164008) Mus musculus chromosome 1, clone RP23-311L17, com... 36 0.71 8
(CQ579092) Sequence 6850 from Patent WO0171042. 38 0.72 2
(X01872) Yeast mitochondrial ori(o) repeat unit of petite mu... 36 0.72 2
(AM461985) Vitis vinifera contig VV78X042574.25, whole genom... 34 0.73 3
(AC209516) Solanum tuberosum chromosome 6 clone RHPOTKEY051B... 36 0.74 2
(AC021685) Homo sapiens clone RP11-15I13, WORKING DRAFT SEQU... 34 0.75 6
(AC234477) Tupaia belangeri clone CH275-21H2, WORKING DRAFT ... 38 0.77 3
(CW938410) TcB18.1_H04_SP6 Tribolium BAC library Tribolium c... 36 0.77 2
(FB571361) Sequence 228 from Patent EP1865317. 34 0.78 6
(FB571305) Sequence 172 from Patent EP1865317. 34 0.78 6
(AM466516) Vitis vinifera contig VV78X259626.9, whole genome... 32 0.78 2
(BX284684) Zebrafish DNA sequence from clone DKEY-14I10 in l... 34 0.79 6
(BD428967) Method and nucleic acids for pharmacogenomic meth... 28 0.79 5
(AX348446) Sequence 141 from Patent WO0202806. 28 0.79 5
(AX339178) Sequence 45 from Patent WO0176451. 28 0.79 5
(AM428914) Vitis vinifera contig VV78X204420.3, whole genome... 38 0.80 3
(BX284622) Zebrafish DNA sequence from clone DKEY-174P10 in ... 38 0.83 5
(CL139092) ISB1-111O22_T7.1 ISB1 Xenopus (Silurana) tropical... 32 0.85 3
(X95276) Plasmodium falciparum complete gene map of plastid-... 32 0.88 4
(FP236365) Brassica rapa subsp. pekinensis clone KBrH107N02,... 32 0.88 5
(EY735496) CS00-C3-704-090-B05-CT.F Sweet orange fruit, deve... 34 0.93 2
(EI931026) VUH2-89O22TV VUUBBa (VUH2) Vigna unguiculata geno... 34 0.94 2
(AY712586) Zaluzianskya microsiphon rpl16 gene, intron; chlo... 32 0.94 2
(EF662603) Uncultured bacterium clone GASP-MA1W1_A12 16S rib... 36 0.94 2
(CU459094) Zebrafish DNA sequence from clone CH73-106K19 in ... 42 0.94 3
(EI490309) PV_GBa0106D16.f PV_GBa Phaseolus vulgaris genomic... 34 0.95 2
(FB509360) Sequence 955 from Patent EP1961827. 40 0.99 2
(FB509124) Sequence 719 from Patent EP1961827. 40 0.99 2
(DL200104) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 40 0.99 2
(DL199868) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 40 0.99 2
(CS250650) Sequence 194 from Patent WO2005123945. 40 0.99 2
(CS250568) Sequence 112 from Patent WO2005123945. 40 0.99 2
(EH185427) EC01_d_3142 EC01 Eragrostis curvula cDNA, mRNA se... 42 1.0 2
(FP236587) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 4
(AG318977) Mus musculus molossinus DNA, clone:MSMg01-104F10.... 32 1.1 3
(CR847865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.1 5
(AC171320) Mus musculus chromosome 5 clone RP23-184D20 map 5... 40 1.1 5
(AC219735) Bos taurus clone CH240-324N1, WORKING DRAFT SEQUE... 44 1.1 4
(CS374676) Sequence 779 from Patent WO2006034879. 28 1.2 4
(CS374404) Sequence 507 from Patent WO2006034879. 28 1.2 4
(AL807244) Zebrafish DNA sequence from clone CH211-215I13 in... 38 1.2 5
(FP016230) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.2 6
(CT573206) Zebrafish DNA sequence from clone CH73-343K13 in ... 34 1.2 4
(AY325300) Paramecium primaurelia strain 156 chromosome frag... 38 1.2 3
(CR956360) Pig DNA sequence from clone CH242-245E12 on chrom... 42 1.2 3
(AX345977) Sequence 1048 from Patent WO0200928. 34 1.2 3
(BX004780) Zebrafish DNA sequence from clone CH211-202P1 in ... 40 1.2 3
(M11449) Yeast mitochondrial ori2-ori7 region DNA with putat... 34 1.2 3
(CQ607169) Sequence 34927 from Patent WO0171042. 38 1.2 2
(AC104507) Drosophila melanogaster 3L BAC RP98-26J11 (Roswel... 38 1.2 6
(AL954656) Zebrafish DNA sequence from clone CH211-67N10 in ... 36 1.2 4
(AM435006) Vitis vinifera contig VV78X267748.3, whole genome... 28 1.3 4
(AC141401) Homo sapiens chromosome 16 clone RP11-1000N11, WO... 42 1.3 3
(DX528800) GH_MBb0037D16f GH_MBb Gossypium hirsutum genomic ... 34 1.3 3
(FP015887) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.3 4
(AF241282) Euglena sanguinea photosystem II protein K (psbK)... 32 1.3 3
(CU928303) Zebrafish DNA sequence from clone CH73-187I15 in ... 44 1.3 1
(BX511240) Zebrafish DNA sequence from clone CH211-113H10. 44 1.3 1
(BX248089) Zebrafish DNA sequence from clone DKEY-21K10 in l... 44 1.3 1
(AL831758) Zebrafish DNA sequence from clone BUSM1-139E12 in... 44 1.3 1
(AL662880) Zebrafish DNA sequence from clone BUSM1-182N13 in... 44 1.3 1
(AL662878) Zebrafish DNA sequence from clone BUSM1-65I4 in l... 44 1.3 1
(AF512525) Danio rerio cardiac troponin T (tnnt2) gene, comp... 44 1.3 1
(AC160825) Xenopus (Silurana) tropicalis clone ISB1-168O21, ... 44 1.3 1
(AL929449) Mouse DNA sequence from clone RP23-279D23 on chro... 44 1.3 1
(AC164623) Mus musculus 10 BAC RP24-401L24 (Roswell Park Can... 44 1.3 1
(AC158342) Mus musculus chromosome 1, clone RP23-12H12, comp... 44 1.3 1
(AC151293) Mus musculus BAC clone RP23-128F3 from chromosome... 44 1.3 1
(AC141644) Mus musculus BAC clone RP23-115F21 from chromosom... 44 1.3 1
(AC134788) Mus musculus chromosome 1, clone RP24-482A14, com... 44 1.3 1
(AC102115) Mus musculus chromosome 3, clone RP23-145A18, com... 44 1.3 1
(CT025633) Pan troglodytes chromosome X clone RP43-007L03 ma... 44 1.3 1
(AC206064) Pongo abelii BAC clone CH276-502K14 from chromoso... 44 1.3 1
(AC146382) Pan troglodytes BAC clone RP43-112E23 from chromo... 44 1.3 1
(AC144510) Pan troglodytes BAC clone RP43-18C13 from chromos... 44 1.3 1
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 44 1.3 1
(AY712590) Zaluzianskya angustifolia rpl16 gene, intron; chl... 44 1.3 1
(AY712589) Zaluzianskya angustifolia rpl16 gene, intron; chl... 44 1.3 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 1.3 1
(AP003627) Oryza sativa Japonica Group genomic DNA, chromoso... 44 1.3 1
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 44 1.3 1
(GC696505) Sequence 11749 from patent US 6812339. 44 1.3 1
(EA699194) Sequence 78073 from patent US 7365185. 44 1.3 1
(EA676468) Sequence 55347 from patent US 7365185. 44 1.3 1
(EA669493) Sequence 48372 from patent US 7365185. 44 1.3 1
(EA669492) Sequence 48371 from patent US 7365185. 44 1.3 1
(DD010736) Diagnosis of known genetic Parameters within the ... 44 1.3 1
(AX344570) Sequence 21 from Patent WO0200932. 44 1.3 1
(AX323717) Sequence 205 from Patent WO0192565. 44 1.3 1
(GM996065) Sequence 205 from Patent EP2014776. 44 1.3 1
(GC697790) Sequence 13035 from patent US 6812339. 44 1.3 1
(EU494031) Drosophila nebulosa voucher 107549 NADH dehydroge... 44 1.3 1
(AY242996) Antheraea pernyi mitochondrion, complete genome. 44 1.3 1
(AY008388) Urostyla grandis micronuclear type II DNA polymer... 44 1.3 1
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 44 1.3 1
(AE001384) Plasmodium falciparum 3D7 chromosome 2 section 21... 44 1.3 1
(AC007086) Drosophila melanogaster, chromosome 2R, region 45... 44 1.3 1
(AC006472) Drosophila melanogaster, chromosome 2R, region 45... 44 1.3 1
(Z94801) Human DNA sequence from PAC 465G10 on chromosome X ... 44 1.3 1
(AL645821) Human DNA sequence from clone RP3-465G10 on chrom... 44 1.3 1
(AL627310) Human DNA sequence from clone RP11-199P24 on chro... 44 1.3 1
(AC119039) Homo sapiens 3 BAC RP11-735B13 (Roswell Park Canc... 44 1.3 1
(AC093799) Homo sapiens BAC clone RP11-307C18 from 7, comple... 44 1.3 1
(AC004841) Homo sapiens PAC clone RP4-607J23 from 7q21.2-q31... 44 1.3 1
(AC160718) Bos taurus clone CH240-86H23, WORKING DRAFT SEQUE... 44 1.3 1
(AC139195) Mus musculus chromosome UNK clone RP23-388P21, WO... 44 1.3 1
(AC128336) Rattus norvegicus clone CH230-49H4, *** SEQUENCIN... 44 1.3 1
(AC101478) Mus musculus clone RP23-187P19, LOW-PASS SEQUENCE... 44 1.3 1
(AC099195) Rattus norvegicus clone CH230-187H23, *** SEQUENC... 44 1.3 1
(CU929752) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.3 1
(CU929572) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.3 1
(CU928262) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.3 1
(CU856220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.3 1
(AC026103) Homo sapiens chromosome 3 clone RP11-910P1, WORKI... 44 1.3 1
(CU013547) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 1.3 1
(CR940348) Theileria annulata genomic DNA chromosome 2. 44 1.3 1
(CR352219) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.3 1
(BX569791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.3 1
(BX276116) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 44 1.3 1
(BX119989) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.3 1
(AL844507) Plasmodium falciparum chromosome 8. 44 1.3 1
(AC231150) Bos taurus clone CH240-96G12, WORKING DRAFT SEQUE... 44 1.3 1
(AC224047) Bos taurus clone CH240-451M17, WORKING DRAFT SEQU... 44 1.3 1
(AC217864) Nomascus leucogenys leucogenys clone CH271-212O22... 44 1.3 1
(AC210632) Oryza glaberrima clone OG_BBa0013J16, *** SEQUENC... 44 1.3 1
(AC206923) Pongo abelii chromosome UNKNOWN clone CH276-449D5... 44 1.3 1
(AC205283) Zea mays chromosome 1 clone CH201-163K6; ZMMBBc01... 44 1.3 1
(AC198584) Spermophilus tridecemlineatus clone VMRC20-667M19... 44 1.3 1
(AC196606) Muntiacus reevesi clone CH245-59H16, WORKING DRAF... 44 1.3 1
(AC191325) Zea mays chromosome 2 clone CH201-265D18; ZMMBBc0... 44 1.3 1
(AC190347) Muntiacus muntjak vaginalis clone CH244-219O24, W... 44 1.3 1
(AC169398) Bos taurus clone CH240-262F2, WORKING DRAFT SEQUE... 44 1.3 1
(AC167226) Bos taurus clone CH240-175D18, WORKING DRAFT SEQU... 44 1.3 1
(AC025551) Homo sapiens chromosome 3 clone RP11-482K2, WORKI... 44 1.3 1
(BH037540) RPCI-24-225A12.TJ RPCI-24 Mus musculus genomic cl... 44 1.3 1
(AZ950305) 2M0214N17F Mouse 10kb plasmid UUGC2M library Mus ... 44 1.3 1
(FI415281) CH322-143J06.y CHORI-322 Drosophila melanogaster ... 44 1.3 1
(FH324879) CHO_OF4547xl20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.3 1
(ET897580) CHO_OF386xj03f1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.3 1
(EK177004) 1095458101778 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.3 1
(AL745168) Danio rerio genomic clone DKEY-6G11, genomic surv... 44 1.3 1
(AL738952) Danio rerio genomic clone DKEY-6J24, genomic surv... 44 1.3 1
(EI998398) SB_BBc288-P14.F SB_BBc Sorghum bicolor genomic 5'... 44 1.3 1
(EI372190) POTDL88TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 1.3 1
(EI369659) POTCM47TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 1.3 1
(EI368974) POTDL64TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 1.3 1
(EI336434) GM_WBc0078I03.r GM_WBc Glycine max genomic clone ... 44 1.3 1
(EI330997) GM_WBc0070H23.f GM_WBc Glycine max genomic clone ... 44 1.3 1
(ED617992) GM_WBa0011J04.r GM_WBa Glycine max genomic clone ... 44 1.3 1
(CZ681525) OM__Ba0240H16.r OM__Ba Oryza minuta genomic clone... 44 1.3 1
(CZ533273) SRAA-aac84c01.g1 Strongyloides ratti whole genome... 44 1.3 1
(CZ303614) ZMMBF0080J16r ZMMBF Zea mays genomic clone ZMMBF0... 44 1.3 1
(CW826815) Ynhw10096 HW-YUBAC Bos taurus genomic clone HW-YU... 44 1.3 1
(CR209936) Reverse strand read from insert in 5'HPRT inserti... 44 1.3 1
(CR055142) Reverse strand read from insert in 5'HPRT inserti... 44 1.3 1
(CL304005) ZMMBBb0093O06f ZMMBBb (HindIII) Zea mays subsp. m... 44 1.3 1
(CG817603) SOYDA20TH LargeInsertSoybeanGenLib Glycine max ge... 44 1.3 1
(CG431709) Bg146-T7 Glomus intraradices Bgl II library (in p... 44 1.3 1
(BZ364240) id97a05.g1 WGS-ZmaysF (JM107 adapted methyl filte... 44 1.3 1
(BH692113) BOMNQ76TF BO_2_3_KB Brassica oleracea genomic clo... 44 1.3 1
(AG361201) Mus musculus molossinus DNA, clone:MSMg01-161O19.... 44 1.3 1
(AG264646) Lotus japonicus DNA, clone:LjT60p21_sfi. 44 1.3 1
(AG177256) Pan troglodytes DNA, clone: RP43-048N23.T7. 44 1.3 1
(EL915087) INIT2_86_D09.g1_A006 G5 trophont cDNA (INIT2) Ich... 44 1.3 1
(EL914078) INIT2_69_F03.b1_A006 G5 trophont cDNA (INIT2) Ich... 44 1.3 1
(EL911854) INIT2_48_B01.g1_A006 G5 trophont cDNA (INIT2) Ich... 44 1.3 1
(EL503399) G10_PFLAB1-LARGE-PLATE7B.AB1 Blood stage Plasmodi... 44 1.3 1
(EL501232) 064_PFLAB1-S-PLATE6B.AB1 Blood stage Plasmodium f... 44 1.3 1
(EL498880) PFLAB1-M_F3_-P8A_D09_07.AB1 Blood stage Plasmodiu... 44 1.3 1
(EC212540) 323828 CK01 Drosophila melanogaster cDNA clone 73... 44 1.3 1
(EB826661) 1082648 KZ01 Plodia interpunctella cDNA clone 551... 44 1.3 1
(EB824506) 1089307 CC04 Plodia interpunctella cDNA clone 568... 44 1.3 1
(EB824445) 1109790 CC04 Plodia interpunctella cDNA clone 572... 44 1.3 1
(DY982964) CLSS5270.b1_K22.ab1 CLS(LMS) lettuce sativa Lactu... 44 1.3 1
(DB781263) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB780336) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB778043) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB777139) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB773267) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB770637) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB770077) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB768568) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB768494) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB768153) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(DB762612) Apis mellifera head cDNA, RIKEN full-length enric... 44 1.3 1
(CU601279) Theobroma cacao, mRNA sequence (KZ0AAG4YM22FM1). 44 1.3 1
(CT599123) Danio rerio EST, clone ZF_mu_18m11 5'. 44 1.3 1
(CO299193) EK174731.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 44 1.3 1
(CO276701) EK121854.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 44 1.3 1
(CO276698) EK121851.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 44 1.3 1
(CO271490) EK103627.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 44 1.3 1
(AJ935890) Theileria annulata EST, clone ta0069E09_b. 44 1.3 1
(AJ935586) Theileria annulata EST, clone ta0089H08_b. 44 1.3 1
(AJ934880) Theileria annulata EST, clone ta0028E07_b. 44 1.3 1
(AJ933307) Theileria annulata EST, clone ta0047A02_b. 44 1.3 1
(AJ930651) Theileria annulata EST, clone ta0047C10_b. 44 1.3 1
(BX602281) Anopheles gambiae EST, clone AGCA735TR. 44 1.3 1
(BU007965) QGH6A13.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ... 44 1.3 1
(BQ980258) QGE10I24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 44 1.3 1
(BQ874174) QGI4J18.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 44 1.3 1
(BQ860773) QGC16K09.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 44 1.3 1
(BQ845208) QGA16B14.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 44 1.3 1
(BP647374) Arabidopsis thaliana cDNA clone:RAFL19-75-E15, 3'... 44 1.3 1
(BM274534) PfESToaa47a06.y1 Plasmodium falciparum 3D7 gameto... 44 1.3 1
(BI630166) RH59150.5prime RH Drosophila melanogaster normali... 44 1.3 1
(BI612987) RH42027.5prime RH Drosophila melanogaster normali... 44 1.3 1
(AA698283) HL04211.5prime HL Drosophila melanogaster head Bl... 44 1.3 1
(BG036380) 602326688F1 NIH_MGC_91 Homo sapiens cDNA clone IM... 44 1.3 1
(GE403941) 293791810 Nasonia vitripennis Female Pupae Nasoni... 44 1.3 1
(GE400073) 293785875 Nasonia vitripennis Female Pupae Nasoni... 44 1.3 1
(GE355501) 291520217 Nasonia vitripennis Male Pupae Nasonia ... 44 1.3 1
(FG083651) UI-FF-IH0-abe-j-08-0-UI.r1 Ceratitis capitata adu... 44 1.3 1
(FG080177) UI-FF-IH0-aat-n-16-0-UI.r1 Ceratitis capitata adu... 44 1.3 1
(FG080136) UI-FF-IH0-aat-f-10-0-UI.r1 Ceratitis capitata adu... 44 1.3 1
(FD428354) Atr01b_55_B06_C010.b1 FGP Male Amborella trichopo... 44 1.3 1
(EV424959) 210735624 NVP Nasonia vitripennis cDNA clone 211A... 44 1.3 1
(ES634693) NVPAV62TR NVPA Nasonia vitripennis cDNA, mRNA seq... 44 1.3 1
(CP000885) Clostridium phytofermentans ISDg, complete genome. 44 1.3 1
(CP000312) Clostridium perfringens SM101, complete genome. 44 1.3 1
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 44 1.3 1
(AM942759) Proteus mirabilis strain HI4320, complete genome. 44 1.3 1
(AE017197) Rickettsia typhi str. Wilmington complete genome. 44 1.3 1
(AX458543) Sequence 89 from Patent WO0246454. 30 1.3 5
(AY248988) Arisaema ciliatum trnL gene, partial sequence; ch... 28 1.3 3
(AY279124) Arisaema formosanum chloroplast tRNA-Leu (trnL) g... 28 1.3 3
(AC105793) Rattus norvegicus clone CH230-253E22, WORKING DRA... 34 1.4 3
(BB981891) Plasmodium berghei str. ANKA cDNA clone: OK012203... 26 1.4 4
(BX072568) Zebrafish DNA sequence from clone DKEY-238I7 in l... 32 1.4 7
(AP006161) Oryza sativa Japonica Group genomic DNA, chromoso... 38 1.4 2
(AC224067) Bos taurus clone CH240-450M4, WORKING DRAFT SEQUE... 34 1.5 5
(AM638900) Entamoeba dispar GSS, clone dispar58g11.q1k. 32 1.5 3
(FH239972) CHO_OF3104xj04f1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 1.5 3
(AC220807) Bos taurus clone CH240-345D7, WORKING DRAFT SEQUE... 40 1.5 2
(AC226849) Tupaia belangeri clone CH275-109P3, WORKING DRAFT... 34 1.6 5
(AC014988) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 1.6 4
(AC224802) Bos taurus clone CH240-475N20, WORKING DRAFT SEQU... 34 1.6 5
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 34 1.6 4
(AX344709) Sequence 134 from Patent WO0200927. 34 1.7 3
(AC120620) Rattus norvegicus clone CH230-43J20, *** SEQUENCI... 40 1.7 3
(CR376852) Zebrafish DNA sequence from clone CH211-181B18 in... 36 1.7 5
(DN332129) LIB3184-028-P2-K1-C6 LIB3184 Canis lupus familiar... 34 1.7 2
(BZ947138) CH240_112I5.TJ CHORI-240 Bos taurus genomic clone... 36 1.7 2
(X05177) Drosophila funebris ubx (Ultrabithorax) gene 5' reg... 30 1.7 3
(BZ216295) CH230-466L2.TV CHORI-230 Segment 2 Rattus norvegi... 38 1.8 2
(AC107449) Rattus norvegicus clone CH230-228H16, *** SEQUENC... 36 1.8 3
(AX356498) Sequence 132 from Patent WO0181622. 34 1.8 2
(FP102341) H.melpomene DNA sequence from clone AEHM-31J7. 32 1.8 4
(AC007834) Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cancer... 40 1.8 4
(CT030725) Mouse DNA sequence from clone RP24-281O2 on chrom... 38 1.8 3
(FP102951) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.9 4
(EV415691) 210746674 NGP Nasonia giraulti cDNA clone 174A15 ... 40 2.0 2
(AC008364) Drosophila melanogaster, chromosome 3R, region 92... 34 2.0 5
(EC824783) SME00001442 esmbsro2 Sawyeria marylandensis cDNA,... 40 2.0 2
(CR965759) mth4-5E24FM1 BAC end, cultivar Jemalong A17 of Me... 30 2.0 3
(AC139708) Medicago truncatula clone mth2-9f16, complete seq... 34 2.1 5
(CF455876) AGENCOURT_15376969 Lupski_anterior_horn Homo sapi... 36 2.1 2
(BX901920) Zebrafish DNA sequence from clone CH211-184M19 in... 32 2.1 6
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 42 2.1 8
(AC010059) Drosophila melanogaster 3L BAC RP98-17A14 (Roswel... 38 2.2 5
(AP009096) Marchantia polymorpha genomic DNA, chromosome Y, ... 32 2.2 2
(X52177) Plasmodium falciparum circular DNA rpoB and rpoC ge... 34 2.2 3
(AC011149) Homo sapiens clone 3_L_16, LOW-PASS SEQUENCE SAMP... 38 2.3 2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 32 2.3 5
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 2.3 7
(DH443324) Macropus eugenii DNA with T7 primer, fosmid clone... 34 2.3 2
(AX347003) Sequence 2074 from Patent WO0200928. 32 2.3 3
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2.3 5
(AC004320) Drosophila melanogaster (P1 DS07424 (D214)) DNA s... 42 2.4 2
(BK006337) TPA_exp: Drosophila persimilis mitochondrion, com... 42 2.4 2
(AC023479) Homo sapiens chromosome 3 clone RP11-363J19 map 3... 36 2.4 4
(AC220774) Bos taurus clone CH240-346L14, WORKING DRAFT SEQU... 36 2.4 5
(AP002450) Homo sapiens genomic DNA, chromosome 18q22 clone:... 40 2.4 6
(CU685479) Crassostrea gigas gills subtracted library, sensi... 40 2.4 2
(EU286785) Manduca sexta mitochondrion, complete genome. 40 2.5 3
(CU914145) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.5 5
(CO389521) AGENCOURT_26625198 NIH_MGC_253 Rattus norvegicus ... 40 2.5 2
(CU856173) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.5 5
(AX344574) Sequence 25 from Patent WO0200932. 34 2.5 2
(AZ530884) ENTCE69TR Entamoeba histolytica Sheared DNA Entam... 38 2.6 2
(AC152343) Bos taurus clone CH240-1K8, WORKING DRAFT SEQUENC... 32 2.6 2
(AC192611) Pan troglodytes BAC clone CH251-35A4 from chromos... 32 2.6 2
(CU104697) Zebrafish DNA sequence from clone CH211-234A4 in ... 36 2.6 5
(AC208298) Glycine tomentella clone gtt1-204p21, WORKING DRA... 34 2.6 2
(AC022281) Homo sapiens chromosome 10 clone RP11-10E13, WORK... 32 2.6 2
(AX346170) Sequence 1241 from Patent WO0200928. 38 2.6 3
(AX356454) Sequence 88 from Patent WO0181622. 32 2.6 3
(AX279998) Sequence 20 from Patent WO0177378. 32 2.6 3
(AC122151) Macaca mulatta clone CH250-492A14, complete seque... 32 2.6 2
(AX344551) Sequence 2 from Patent WO0200932. 32 2.6 7
(AC189244) Brassica rapa subsp. pekinensis clone KBrB017F11,... 34 2.6 2
(AC123963) Macaca mulatta clone CH250-246J11, complete seque... 32 2.7 2
(AC175088) Glycine tomentella clone gtt1-30c23, WORKING DRAF... 34 2.7 2
(AC014222) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 2.7 2
(GC700984) Sequence 16229 from patent US 6812339. 34 2.7 2
(AC232565) Brassica rapa subsp. pekinensis clone KBrH095F22,... 34 2.7 2
(FP102796) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 30 2.7 5
(FP102736) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.8 4
(AP010787) Solanum lycopersicum DNA, chromosome 8, clone: C0... 32 2.8 2
(AC116540) Drosophila melanogaster clone RP98-20J5, WORKING ... 38 2.8 5
(CU638699) Zebrafish DNA sequence from clone CH1073-232N15 i... 34 2.8 4
(AX458610) Sequence 156 from Patent WO0246454. 34 2.9 3
(CL077343) CH216-144L8_Sp6.1 CH216 Xenopus (Silurana) tropic... 36 2.9 2
(CU481368) Zebrafish DNA sequence from clone CH1073-174O23 i... 34 2.9 2
(EU746614) Nasonia giraulti strain RV2 12S ribosomal RNA gen... 42 2.9 2
(AC132379) Mus musculus BAC clone RP23-412C9 from chromosome... 32 3.0 5
(CU681835) H.melpomene DNA sequence from clone AEHM-21P16. 32 3.0 6
(AC098461) Rattus norvegicus clone CH230-2F17, WORKING DRAFT... 36 3.0 6
(CU693457) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 3.0 4
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 36 3.0 6
(AC118893) Rattus norvegicus clone CH230-492M9, WORKING DRAF... 38 3.1 3
(AC123368) Rattus norvegicus clone CH230-506E3, *** SEQUENCI... 34 3.2 3
(AL929365) Plasmodium falciparum chromosome 13, unmapped con... 34 3.2 3
(AC193804) Heliconius erato clone BBAM-38A20, WORKING DRAFT ... 40 3.3 4
(AF467676) Acidiella circumvaga isolate AcidCirc-1 16S ribos... 34 3.3 2
(BD452721) Diagnosis of Diseases Associated with tumor suppr... 38 3.3 3
(AX251200) Sequence 168 from Patent WO0168912. 38 3.3 3
(CS604482) Sequence 3468 from Patent WO2007039234. 34 3.3 2
(CS602834) Sequence 1820 from Patent WO2007039234. 34 3.3 2
(AF467677) Acidiella circumvaga isolate AcidCirc-2 16S ribos... 34 3.3 2
(CZ620415) OM__Ba0150N19.f OM__Ba Oryza minuta genomic clone... 34 3.4 2
(DB756868) Apis mellifera head cDNA, RIKEN full-length enric... 32 3.4 3
(AJ925855) Theileria annulata EST, clone tam009a05_q1k. 32 3.4 2
(AX346402) Sequence 1473 from Patent WO0200928. 34 3.4 3
(CU469550) Medicago truncatula chromosome 5 clone mth4-43k19... 36 3.4 3
(AG401377) Mus musculus molossinus DNA, clone:MSMg01-235P17.... 32 3.4 2
(DX533870) GH_MBb0079J07r GH_MBb Gossypium hirsutum genomic ... 36 3.4 2
(BX470185) Zebrafish DNA sequence from clone CH211-222D3 in ... 36 3.5 5
(CT550208) A BAC library has been constructed from cultivar ... 34 3.5 2
(CZ541987) SRAA-aad41e01.g1 Strongyloides ratti whole genome... 34 3.5 2
(BX293997) Zebrafish DNA sequence from clone DKEY-15L7 in li... 32 3.5 8
(DR080201) RTFEPL1_21_C02.b1_A029 Roots plus added iron Pinu... 32 3.5 2
(DX561591) GH_MBb0065D22f GH_MBb Gossypium hirsutum genomic ... 34 3.5 2
(AM932356) Typhonium giganteum plastid partial tRNA-Leu gene... 34 3.5 2
(EV839724) TT1EQ25TV Tetrahymena thermophila SB210 cDNA libr... 32 3.5 2
(CF474795) RTWW2_8_D08.b1_A021 Well-watered loblolly pine ro... 32 3.5 2
(CZ901090) gz31b06.x1.b.screen Soybean methylation filtered ... 32 3.5 2
(CA302194) taa11d09.y1 Hydra cDNA library Hydra magnipapilla... 32 3.5 2
(AY249013) Typhonium giganteum trnL gene, partial sequence; ... 34 3.6 2
(AX346500) Sequence 1571 from Patent WO0200928. 38 3.6 2
(CS468878) Sequence 69 from Patent EP1748080. 42 3.6 6
(CS468877) Sequence 68 from Patent EP1748080. 42 3.6 6
(CS419355) Sequence 69 from Patent WO2006094836. 42 3.6 6
(CS419354) Sequence 68 from Patent WO2006094836. 42 3.6 6
(DX552159) GH_MBb0042M09r GH_MBb Gossypium hirsutum genomic ... 40 3.6 2
(AC024081) Arabidopsis thaliana chromosome III P1 MJK13 geno... 36 3.6 3
(AB022218) Arabidopsis thaliana genomic DNA, chromosome 3, P... 36 3.6 3
(AE016821) Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 36 3.6 2

>(BJ390221) Dictyostelium discoideum cDNA clone:dds21i15, 5' end,
single read.
Length = 150

Score = 278 bits (140), Expect = 5e-71
Identities = 140/140 (100%)
Strand = Plus / Plus


Query: 1 cctactggaaaaacaaaatacacactcacacgctcgcaccaccatataaatttatttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctactggaaaaacaaaatacacactcacacgctcgcaccaccatataaatttatttata 60


Query: 61 ttttataatataaaaaactcaactgaataatttcaccacacaccttcacatatttaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttataatataaaaaactcaactgaataatttcaccacacaccttcacatatttaaact 120


Query: 121 gcataataaattatattaat 140
||||||||||||||||||||
Sbjct: 121 gcataataaattatattaat 140

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 276,966,188
Number of extensions: 22024441
Number of successful extensions: 7292775
Number of sequences better than 10.0: 1178
Length of query: 149
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 127
Effective length of database: 99,544,435,898
Effective search space: 12642143359046
Effective search space used: 12642143359046
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03703-1 (Contig-U03703-1Q) /CSM_Contig/Contig-U03703-1Q.Seq.d
(149 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 249,188,861
Number of extensions: 4783924
Number of successful extensions: 4241
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4240
Number of HSP's successfully gapped: 0
Length of query: 49
Length of database: 1,061,185,681
Length adjustment: 22
Effective length of query: 27
Effective length of database: 989,279,825
Effective search space: 26710555275
Effective search space used: 26710555275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.84 gvh: 0.11 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall

>> prediction for Contig-U03703-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0