Contig-U03667-1
Contig ID Contig-U03667-1
Contig update 2002. 9.13
Contig sequence
>Contig-U03667-1 (Contig-U03667-1Q) /CSM_Contig/Contig-U03667-1Q.Seq.d
ATTAGAAATTTTACATTTTTTAATTAGATCACAATCTCCTACTATATGTC
TATTTTAAAAAATAATAATAATTTCATTAATAAGATATTAAAAAAACATT
ATTTAAAAAGAATATATATATACATACAAAACAAAACCTTTATCAGTCAT
CTTTGAAAAATTTAAATAACCAATAGATGGATCAACAGTAAAACCAATTC
CATCTATAAGTAAATAGTCAAGTTTAAATCTTGAAATTAATGATTGTTGT
AATGTGAATTTTTGAATTGTTGCTTCTTTACCAGAGTTTATGAATTGGAT
TTCCATTGCATTGACTCTTTTATACCAATCTTGATTAATTGAATCTATTG
AAAAATTCTTGTAACCTTTTTGAGACATTTCATTATGAATTTGAAAATTT
ATTAATTCTAAATTTGGGAATAAATCCATTGATGGTACATTTGTATCAAT
ATGATTGAGTGATAAACTCAATGTATTTATATATGTATTTATTTTTGTTA
GTTTTGGATATTTAAAACCAGGTAATGTTTTTTTAACAATTATTCTATTA
ATAACTCCCTCAAACCAAATTGAACTTAATGGCACAGAAATTGAATTAAA
TTGANCAGTTTTC

Gap no gap
Contig length 613
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2437131
End point 2437744
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03667
List of clone(s)

est1=SFJ273Z,1,614
Translated Amino Acid sequence
leilhflirsqspticlf*kiiiisliry*knii*keyiytyktkplsvifekfk*pidg
stvkpipsisk*sslnleindccnvnf*ivaslpefmnwisialtllyqs*liesiekfl
*pf*disl*i*kfinskfgnksidgtfvsi*LSDKLNVFIYVFIFVSFGYLKPGNVFLTI
ILLITPSNQIELNGTEIELN*xvf


Translated Amino Acid sequence (All Frames)
Frame A:
irnftffn*itisyymsilknnnnfinkilkkhylkriyiyiqnktfishl*ki*itnrw
insktnsiyk*ivkfks*n**ll*ceflnccfftrvyeldfhcidsfipilin*iy*kil
vtflrhfimnlkiy*f*iwe*ih*wyicinmie**tqciyiciyfc*fwifktr*cffnn
ysinnslkpn*t*whrn*iklxsf


Frame B:
leilhflirsqspticlf*kiiiisliry*knii*keyiytyktkplsvifekfk*pidg
stvkpipsisk*sslnleindccnvnf*ivaslpefmnwisialtllyqs*liesiekfl
*pf*disl*i*kfinskfgnksidgtfvsi*LSDKLNVFIYVFIFVSFGYLKPGNVFLTI
ILLITPSNQIELNGTEIELN*xvf


Frame C:
*kfyif*ldhnlllyvyfkk***fh**dikktlfkkniyihtkqnlyqsslknlnnq*md
qq*nqfhl*vnsqv*ilklmivvm*ifellllyqsl*igfplh*lfytnld*lnllknsc
nlfetfhyefenllilnlginplmvhlyqyd*vinsmylymylfllvldi*nqvmff*ql
fy**lpqtklnlmaqkln*ixqf


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03667-1 (Contig-U03667-1Q)
/CSM_Contig/Contig-U03667-1Q.Seq.d
(613 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03667-1 (Contig-U03667-1Q) /CSM_Contig/Conti... 1126 0.0
Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U07109-1 (Contig-U07109-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U06294-1 (Contig-U06294-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U04680-1 (Contig-U04680-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U02098-1 (Contig-U02098-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U14352-1 (Contig-U14352-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U10675-1 (Contig-U10675-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U09473-1 (Contig-U09473-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U03667-1 (Contig-U03667-1Q) /CSM_Contig/Contig-U03667-1Q.Seq.d
Length = 613

Score = 1126 bits (568), Expect = 0.0
Identities = 599/613 (97%)
Strand = Plus / Plus


Query: 1 attagaaattttacattttttaattagatcacaatctcctactatatgtctattttaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attagaaattttacattttttaattagatcacaatctcctactatatgtctattttaaaa 60


Query: 61 aataataataatttcattaataagatattnnnnnnncattatttaaaaagaatatatata 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 aataataataatttcattaataagatattaaaaaaacattatttaaaaagaatatatata 120


Query: 121 tacatacaaaacaaaacctttatcagtcatctttgaaaaatttaaataaccaatagatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacatacaaaacaaaacctttatcagtcatctttgaaaaatttaaataaccaatagatgg 180


Query: 181 atcaacagtaaaaccaattccatctataagtaaatagtcaagtttaaatcttgaaattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcaacagtaaaaccaattccatctataagtaaatagtcaagtttaaatcttgaaattaa 240


Query: 241 tgattgttgtaatgtgaatttttgaattgttgcttctttaccagagtttatgaattggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgattgttgtaatgtgaatttttgaattgttgcttctttaccagagtttatgaattggat 300


Query: 301 ttccattgcattgactcttttataccaatcttgattaattgaatctattgaaaaattctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccattgcattgactcttttataccaatcttgattaattgaatctattgaaaaattctt 360


Query: 361 gtaacctttttgagacatttcattatgaatttgaaaatttattaattctaaatttgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtaacctttttgagacatttcattatgaatttgaaaatttattaattctaaatttgggaa 420


Query: 421 taaatccattgatggtacatttgtatcaatatgattgagtgataaactcaatgtatttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaatccattgatggtacatttgtatcaatatgattgagtgataaactcaatgtatttat 480


Query: 481 atatgtatttatttttgttagttttggatatttaaaaccaggtaatgnnnnnnnaacaat 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 atatgtatttatttttgttagttttggatatttaaaaccaggtaatgtttttttaacaat 540


Query: 541 tattctattaataactccctcaaaccaaattgaacttaatggcacagaaattgaattaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tattctattaataactccctcaaaccaaattgaacttaatggcacagaaattgaattaaa 600


Query: 601 ttgancagttttc 613
|||||||||||||
Sbjct: 601 ttgancagttttc 613


>Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Contig-U11867-1Q.Seq.d
Length = 2567

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 53 ttttaaaaaataataataattt 74
||||||||||||||||||||||
Sbjct: 219 ttttaaaaaataataataattt 240


>Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Contig-U02520-1Q.Seq.d
Length = 1247

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 475 atttatatatgtatttattttt 496
||||||||||||||||||||||
Sbjct: 1152 atttatatatgtatttattttt 1173


Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 98 attatttaaaaagaa 112
|||||||||||||||
Sbjct: 136 attatttaaaaagaa 150


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,472
Number of Sequences: 6905
Number of extensions: 30472
Number of successful extensions: 4385
Number of sequences better than 10.0: 819
length of query: 613
length of database: 5,674,871
effective HSP length: 16
effective length of query: 597
effective length of database: 5,564,391
effective search space: 3321941427
effective search space used: 3321941427
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 5
Homology vs DNA
Query= Contig-U03667-1 (Contig-U03667-1Q) /CSM_Contig/Contig-U03667-1Q.Seq.d
(613 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ401889) Dictyostelium discoideum cDNA clone:dds19a20, 3' ... 775 0.0 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 775 0.0 3
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.016 11
(AC127834) Rattus norvegicus clone CH230-310P20, WORKING DRA... 52 0.025 1
(AC118907) Rattus norvegicus clone CH230-202H16, *** SEQUENC... 52 0.025 1
(AC113732) Rattus norvegicus clone CH230-210M17, WORKING DRA... 52 0.025 1
(AC097283) Rattus norvegicus clone CH230-167D17, WORKING DRA... 52 0.025 1
(CU024885) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.025 1
(AC180194) Strongylocentrotus purpuratus clone R3-3I3, WORKI... 52 0.025 1
(AC178840) Strongylocentrotus purpuratus clone R3-26B22, WOR... 52 0.025 1
(AC189272) Brassica rapa subsp. pekinensis clone KBrB023N04,... 36 0.035 7
(AC156365) Bos taurus clone RP42-18L9, complete sequence. 46 0.041 4
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 44 0.054 5
(AF352790) Chrysomya putoria mitochondrion, complete genome. 34 0.063 5
(AM444900) Vitis vinifera, whole genome shotgun sequence, co... 38 0.068 2
(U52852) Homo sapiens TS PST1 (STP1) gene, complete cds. 34 0.071 2
(EJ838783) 1093017816949 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.078 2
(EJ852205) 1093017895523 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.078 2
(CT539067) A BAC library has been constructed from cultivar ... 38 0.079 2
(DX449743) BE2009_C20_R IASMA L2 HindIII BAC library Vitis v... 38 0.079 2
(CU781771) A BAC library has been constructed from PN40024 g... 38 0.080 2
(FJ497007) Latimeria menadoensis HoxC gene cluster, complete... 50 0.10 1
(BX470100) Zebrafish DNA sequence from clone DKEY-239K7 in l... 50 0.10 1
(AL929229) Zebrafish DNA sequence from clone CH211-1E14 in l... 50 0.10 1
(AC161594) Mus musculus BAC clone RP24-153G11 from chromosom... 50 0.10 1
(AC126642) Rattus norvegicus clone CH230-172F17, *** SEQUENC... 50 0.10 1
(AC094976) Rattus norvegicus clone CH230-6M11, *** SEQUENCIN... 50 0.10 1
(AC094536) Rattus norvegicus clone CH230-4H23, *** SEQUENCIN... 50 0.10 1
(BX470165) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.10 1
(AC093476) Mus musculus chromosome 6, clone RP23-55C15, comp... 44 0.15 4
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 0.16 7
(AM442626) Vitis vinifera contig VV78X227824.4, whole genome... 40 0.17 2
(CU928775) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.20 4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.24 9
(ED618704) GM_WBa0012K03.f GM_WBa Glycine max genomic clone ... 44 0.25 2
(AL034488) Caenorhabditis elegans YAC Y54G11A. 40 0.25 6
(AM426062) Vitis vinifera contig VV78X254225.10, whole genom... 48 0.26 2
(CR381635) Zebrafish DNA sequence from clone DKEY-171C9 in l... 40 0.27 7
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.31 8
(AC181365) Strongylocentrotus purpuratus clone R3-3040O01, W... 48 0.39 2
(CT027758) Zebrafish DNA sequence from clone CH211-184P2 in ... 48 0.40 1
(CR846081) Zebrafish DNA sequence from clone CH211-241C4. 48 0.40 1
(CR318620) Zebrafish DNA sequence from clone DKEY-88N2 in li... 48 0.40 1
(AL732510) Zebrafish DNA sequence from clone RP71-39A15 in l... 48 0.40 1
(CT025686) Mouse DNA sequence from clone RP24-273I13 on chro... 48 0.40 1
(AL844487) Mouse DNA sequence from clone RP23-162L23 on chro... 48 0.40 1
(AL645603) Mouse DNA sequence from clone RP23-299L18 on chro... 48 0.40 1
(AL589879) Mouse DNA sequence from clone RP23-38E20 on chrom... 48 0.40 1
(AC108806) Mus musculus chromosome 14, clone RP23-246G7, com... 48 0.40 1
(EA771733) Sequence 17 from patent US 7381808. 48 0.40 1
(DD080727) Method and nucleic acids for the differentiation ... 48 0.40 1
(BD354234) Method of screening for INK4 family gene expressi... 48 0.40 1
(AX659046) Sequence 17 from Patent WO02103041. 48 0.40 1
(AX657772) Sequence 17 from Patent WO02103042. 48 0.40 1
(AX349105) Sequence 31 from Patent WO0202808. 48 0.40 1
(AX347384) Sequence 31 from Patent WO0200705. 48 0.40 1
(AX345472) Sequence 543 from Patent WO0200928. 48 0.40 1
(GC700261) Sequence 15506 from patent US 6812339. 48 0.40 1
(AC011475) Homo sapiens chromosome 19 clone CTC-539A10, comp... 48 0.40 1
(AC010090) Homo sapiens BAC clone RP11-294G19 from 2, comple... 48 0.40 1
(AB074969) Homo sapiens p19INK4d gene for cyclin-dependent k... 48 0.40 1
(AC160556) Mus musculus chromosome 1 clone RP23-436C5 map 1,... 48 0.40 1
(AC160521) Papio hamadryas clone RP41-6H9, WORKING DRAFT SEQ... 48 0.40 1
(AC160520) Papio hamadryas clone RP41-415A9, WORKING DRAFT S... 48 0.40 1
(AC139994) Mus musculus chromosome 14 clone RP23-38F20 map 1... 48 0.40 1
(AC133668) Rattus norvegicus clone CH230-154O7, *** SEQUENCI... 48 0.40 1
(AC111329) Rattus norvegicus clone CH230-342G6, WORKING DRAF... 48 0.40 1
(AC095182) Rattus norvegicus clone CH230-9D1, *** SEQUENCING... 48 0.40 1
(FP102355) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1
(CU984597) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.40 1
(AC230804) Bos taurus clone CH240-498N17, WORKING DRAFT SEQU... 48 0.40 1
(AC174781) Strongylocentrotus purpuratus clone R3-3112P16, W... 48 0.40 1
(AC173732) Strongylocentrotus purpuratus clone R3-3001E14, W... 48 0.40 1
(AZ732331) RPCI-24-131C21.TV RPCI-24 Mus musculus genomic cl... 48 0.40 1
(EF969445) Mus musculus C57BL/6N IST13071B12HMF1 gene trap e... 48 0.40 1
(EF884320) Mus musculus C57BL/6N IST12069F9BBF1 gene trap em... 48 0.40 1
(EF882208) Mus musculus C57BL/6N IST12069F9HMF1 gene trap em... 48 0.40 1
(CT521577) A BAC library has been constructed from cultivar ... 48 0.40 1
(AG621196) Macaca fuscata fuscata DNA, clone: MSB2-014B17_R,... 48 0.40 1
(BY565814) Mus musculus activated spleen cDNA, RIKEN full-le... 48 0.40 1
(AC100844) Homo sapiens chromosome 18, clone RP11-659F24, co... 42 0.44 3
(CR450815) Zebrafish DNA sequence from clone CH211-39F2 in l... 40 0.47 3
(CU855957) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.49 4
(AC215395) Solanum lycopersicum chromosome 2 clone C02HBa014... 34 0.51 6
(AX510145) Sequence 4840 from Patent WO0216655. 36 0.52 2
(EA333227) Sequence 5719 from patent US 7306913. 40 0.62 6
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 30 0.62 18
(CU929722) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.64 6
(DQ029097) Haematobia irritans irritans mitochondrion, compl... 36 0.65 4
(AC017775) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 32 0.68 3
(BX664745) Zebrafish DNA sequence from clone DKEY-242A8 in l... 36 0.72 8
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 34 0.73 2
(CT817803) Zebrafish DNA sequence from clone DKEY-114G13 in ... 44 0.79 3
(AC162147) Loxodonta africana clone VMRC15-70H1, WORKING DRA... 36 0.85 2
(ED317648) AUAC-aaa20d09.g1 Ascaris suum whole genome shotgu... 34 0.85 3
(BX255936) Zebrafish DNA sequence from clone CH211-113K19 in... 32 0.87 2
(AC122030) Mus musculus BAC clone RP24-401B24 from chromosom... 38 0.93 3
(EK296011) 1095462347555 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.96 2
(AC140317) Mus musculus BAC clone RP23-396O18 from chromosom... 40 0.98 4
(ER610078) 1093016303107 Global-Ocean-Sampling_GS-36-01-01-2... 38 0.99 2
(AC147600) Homo sapiens chromosome 5 clone RP11-1327J15, WOR... 44 0.99 5
(EJ725376) 1092959495616 Global-Ocean-Sampling_GS-30-02-01-1... 38 1.00 2
(AX344613) Sequence 38 from Patent WO0200927. 34 1.00 2
(AL928837) Zebrafish DNA sequence from clone CH211-105F16. 32 1.0 8
(CD509800) CDA98-C07.y1d-s SHGC-CDA Gasterosteus aculeatus c... 32 1.1 2
(AE017308) Mycoplasma mobile 163K complete genome. 36 1.1 13
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1. 32 1.1 10
(FH566711) CHO_OF4877xc20f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.1 2
(AL772144) Zebrafish DNA sequence from clone CH211-164J3 in ... 34 1.1 8
(BG522210) 19-49 Stevia field grown leaf cDNA Stevia rebaudi... 36 1.1 2
(BJ388980) Dictyostelium discoideum cDNA clone:dds17b03, 5' ... 36 1.1 2
(AC012843) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 1.1 2
(CR931797) Zebrafish DNA sequence from clone CH211-87D5 in l... 36 1.3 4
(CU464119) Zebrafish DNA sequence from clone CH73-271G12 in ... 38 1.4 5
(AC146633) Mus musculus BAC clone RP24-483C21 from chromosom... 40 1.4 5
(BX005044) Zebrafish DNA sequence from clone DKEY-7L6 in lin... 38 1.4 5
(CU695183) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.4 7
(BX470150) Zebrafish DNA sequence from clone DKEY-164K14 in ... 42 1.5 6
(EA687333) Sequence 66212 from patent US 7365185. 38 1.5 3
(AC216982) Bos taurus Y Chr BAC CH240-336L2 (Children's Hosp... 46 1.5 3
(CR383667) Zebrafish DNA sequence from clone CH211-229P19 in... 44 1.6 2
(AC199300) Spermophilus tridecemlineatus clone VMRC20-512K17... 46 1.6 2
(CT573211) Zebrafish DNA sequence from clone DKEYP-91C12 in ... 44 1.6 3
(AC151332) Xenopus (Silurana) tropicalis clone ISB-315C6, co... 38 1.6 4
(CU207409) Zebrafish DNA sequence from clone CH73-212J7 in l... 46 1.6 1
(CR925792) Zebrafish DNA sequence from clone DKEY-255G15 in ... 46 1.6 1
(BX649250) Zebrafish DNA sequence from clone DKEY-53B2 in li... 46 1.6 1
(AL954666) Zebrafish DNA sequence from clone CH211-81I19 in ... 46 1.6 1
(AL953844) Zebrafish DNA sequence from clone DKEY-29G23 in l... 46 1.6 1
(G09290) human STS CHLC.GTAT1E10.P8045 clone GTAT1E10, seque... 46 1.6 1
(AB140950) Homo sapiens DNA, STS on chromosome 9, D9S0400i, ... 46 1.6 1
(AC189955) Pan troglodytes chromosome X clone CH251-73A23 ma... 46 1.6 1
(AC182645) Pan troglodytes BAC clone CH251-7F19 from chromos... 46 1.6 1
(AC161010) Pan troglodytes BAC clone CH251-501B6 from chromo... 46 1.6 1
(AB011480) Arabidopsis thaliana genomic DNA, chromosome 5, P... 46 1.6 1
(DL241608) ARTIFICIAL CHROMOSOMES, USES THEREOF AND METHODS ... 46 1.6 1
(DL175253) ARTIFICIAL CHROMOSOMES, USES THEREOF AND METHODS ... 46 1.6 1
(DJ462791) Method for analysing genome using microsatellite ... 46 1.6 1
(DI004863) Materials and methods for identifying and analyzi... 46 1.6 1
(DD280641) ARTIFICIAL CHROMOSOMES, USES THEREOF AND METHODS ... 46 1.6 1
(DD210146) Methods of Diagnosis of Cancer, Compositions and ... 46 1.6 1
(CS449444) Sequence 140 from Patent EP1721977. 46 1.6 1
(CS359683) Sequence 22 from Patent WO2006075084. 46 1.6 1
(BD314098) Epithelial cell growth inhibitors. 46 1.6 1
(BD130096) Material and method for specifying and analyzing ... 46 1.6 1
(AX664499) Sequence 73 from Patent WO02059370. 46 1.6 1
(AX063697) Sequence 7 from Patent WO0078955. 46 1.6 1
(AR715409) Sequence 7 from patent US 6939714. 46 1.6 1
(AR565214) Sequence 40 from patent US 6767703. 46 1.6 1
(AR545932) Sequence 1063 from patent US 6747137. 46 1.6 1
(AR153990) Sequence 40 from patent US 6238863. 46 1.6 1
(AC232941) Bos taurus Y Chr NOVECTOR CH240-255J15 (Children'... 46 1.6 1
(AC226425) Bos taurus Y Chr BAC CH240-462O9 (Children's Hosp... 46 1.6 1
(AC215666) Bos taurus Y Chr BAC CH240-80M8 (Children's Hospi... 46 1.6 1
(AC213441) Bos taurus Y Chr BAC CH240-14B16 (Children's Hosp... 46 1.6 1
(AC170103) Bos taurus Y Chr BAC CH240-244O21 (Children's Hos... 46 1.6 1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 46 1.6 1
(U13369) Human ribosomal DNA complete repeating unit. 46 1.6 1
(M25718) Human rDNA and 4 Alu repeats. 46 1.6 1
(DQ496102) Homo sapiens iron-responsive element binding prot... 46 1.6 1
(BX648897) Homo sapiens genomic DNA; cDNA DKFZp686G0429 (fro... 46 1.6 1
(AL592188) Human DNA sequence from clone RP11-337M7 on chrom... 46 1.6 1
(AL354795) Human DNA sequence from clone RP11-174B4 on chrom... 46 1.6 1
(AL353644) Human DNA sequence from clone RP11-164K15 on chro... 46 1.6 1
(AL139233) Human DNA sequence from clone RP1-44A19 on chromo... 46 1.6 1
(AL133344) Human DNA sequence from clone RP5-1158H2 on chrom... 46 1.6 1
(AL121790) Human chromosome 14 DNA sequence BAC R-356O9 of l... 46 1.6 1
(AF220038) Homo sapiens tripartite motif protein TRIM9 isofo... 46 1.6 1
(AF220037) Homo sapiens tripartite motif protein TRIM9 isofo... 46 1.6 1
(AF220036) Homo sapiens tripartite motif protein TRIM9 isofo... 46 1.6 1
(AC133920) Homo sapiens chromosome 16 clone RP11-413O9, comp... 46 1.6 1
(AC117432) Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer... 46 1.6 1
(AC116491) Homo sapiens chromosome 17, clone CTD-3089B9, com... 46 1.6 1
(AC110921) Homo sapiens chromosome 17, clone CTD-2653B5, com... 46 1.6 1
(AC099327) Homo sapiens chromosome 3 clone RP11-51O17, compl... 46 1.6 1
(AC090200) Homo sapiens chromosome 8, clone RP11-628E19, com... 46 1.6 1
(AC027228) Homo sapiens chromosome 15, clone RP11-650L12, co... 46 1.6 1
(AC018719) Homo sapiens BAC clone RP11-573N21 from Xq23, com... 46 1.6 1
(AC007448) Homo sapiens chromosome 17, clone RP11-401F2, com... 46 1.6 1
(AC007110) Homo sapiens chromosome 6, clone hRPK.472_J_18, c... 46 1.6 1
(AC161989) Bos taurus clone CH240-105N11, WORKING DRAFT SEQU... 46 1.6 1
(AC161698) Bos taurus clone CH240-108C2, WORKING DRAFT SEQUE... 46 1.6 1
(AC160428) Bos taurus clone CH240-90N16, WORKING DRAFT SEQUE... 46 1.6 1
(AC160310) Bos taurus clone CH240-81K12, WORKING DRAFT SEQUE... 46 1.6 1
(AC159764) Bos taurus clone CH240-80E14, WORKING DRAFT SEQUE... 46 1.6 1
(AC159116) Bos taurus clone CH240-45M23, WORKING DRAFT SEQUE... 46 1.6 1
(AC159056) Bos taurus clone CH240-63D24, WORKING DRAFT SEQUE... 46 1.6 1
(AC156717) Bos taurus clone CH240-55B24, WORKING DRAFT SEQUE... 46 1.6 1
(AC156667) Bos taurus clone CH240-60M23, WORKING DRAFT SEQUE... 46 1.6 1
(AC156480) Bos taurus clone CH240-52F23, WORKING DRAFT SEQUE... 46 1.6 1
(AC156461) Bos taurus clone CH240-60A7, WORKING DRAFT SEQUEN... 46 1.6 1
(AC156319) Bos taurus clone CH240-51E3, WORKING DRAFT SEQUEN... 46 1.6 1
(AC156136) Bos taurus clone CH240-39F20, *** SEQUENCING IN P... 46 1.6 1
(AC156096) Bos taurus clone CH240-49L3, WORKING DRAFT SEQUEN... 46 1.6 1
(AC155129) Bos taurus clone CH240-43B22, WORKING DRAFT SEQUE... 46 1.6 1
(AC155069) Bos taurus clone CH240-20B3, WORKING DRAFT SEQUEN... 46 1.6 1
(AC153703) Bos taurus clone CH240-28O16, WORKING DRAFT SEQUE... 46 1.6 1
(AC151181) Bos taurus clone CH240-431C22, WORKING DRAFT SEQU... 46 1.6 1
(AC149458) Papio anubis clone RP41-397H7, WORKING DRAFT SEQU... 46 1.6 1
(AC145969) Pan troglodytes chromosome UNK clone RP43-12J14, ... 46 1.6 1
(AC143327) Homo sapiens chromosome 16 clone RP11-904P17, WOR... 46 1.6 1
(AC141300) Homo sapiens chromosome 16 clone RP11-69H20, WORK... 46 1.6 1
(AC141245) Homo sapiens chromosome 16 clone RP11-1149O10, WO... 46 1.6 1
(AC139770) Homo sapiens chromosome 16 clone CTD-2222N21, WOR... 46 1.6 1
(AC136614) Homo sapiens chromosome 16 clone RP11-370N13, WOR... 46 1.6 1
(AC134223) Rattus norvegicus clone CH230-10C12, *** SEQUENCI... 46 1.6 1
(AC127053) Rattus norvegicus clone CH230-11G17, WORKING DRAF... 46 1.6 1
(AC125730) Rattus norvegicus clone CH230-4L1, WORKING DRAFT ... 46 1.6 1
(AC097171) Rattus norvegicus clone CH230-1O19, *** SEQUENCIN... 46 1.6 1
(AC096183) Rattus norvegicus clone CH230-31P21, *** SEQUENCI... 46 1.6 1
(AC094819) Rattus norvegicus clone CH230-5J12, WORKING DRAFT... 46 1.6 1
(FP236378) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236353) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236352) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236317) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236314) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236254) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(FP236247) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(CU861534) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU633165) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CU469447) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(AC091632) Homo sapiens chromosome UL clone RP11-589N14, ***... 46 1.6 1
(AC091599) Homo sapiens chromosome UL clone RP11-318I5, *** ... 46 1.6 1
(AC090708) Homo sapiens chromosome UL clone RP11-154B16, ***... 46 1.6 1
(AC068881) Homo sapiens chromosome 2 clone RP11-372E22 map 2... 46 1.6 1
(AC068192) Homo sapiens clone RP11-591P9, WORKING DRAFT SEQU... 46 1.6 1
(CU468054) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(CT573281) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(CT476836) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(CR753794) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(CR381542) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.6 1
(BX545908) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(AL645762) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(AL590990) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(AL355134) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.6 1
(AL158197) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.6 1
(AL135879) Human chromosome 14 DNA sequence *** IN PROGRESS ... 46 1.6 1
(AF254980) Homo sapiens chromosome 8 map 8q clone RP11-628E1... 46 1.6 1
(AC232306) Homo sapiens chromosome UNKNOWN clone ABC7-420548... 46 1.6 1
(AC231275) Homo sapiens chromosome UNKNOWN clone ABC12-46987... 46 1.6 1
(AC230738) Bos taurus clone CH240-500J24, WORKING DRAFT SEQU... 46 1.6 1
(AC230606) Bos taurus clone CH240-503L16, WORKING DRAFT SEQU... 46 1.6 1
(AC230434) Bos taurus clone CH240-509E20, WORKING DRAFT SEQU... 46 1.6 1
(AC224777) Bos taurus clone CH240-476P16, WORKING DRAFT SEQU... 46 1.6 1
(AC224363) Bos taurus clone CH240-486J9, WORKING DRAFT SEQUE... 46 1.6 1
(AC223547) Bos taurus clone CH240-466K3, WORKING DRAFT SEQUE... 46 1.6 1
(AC223545) Bos taurus clone CH240-466J10, WORKING DRAFT SEQU... 46 1.6 1
(AC223150) Bos taurus clone CH240-428I8, WORKING DRAFT SEQUE... 46 1.6 1
(AC222330) Bos taurus clone CH240-415D20, WORKING DRAFT SEQU... 46 1.6 1
(AC221753) Bos taurus clone CH240-386D9, WORKING DRAFT SEQUE... 46 1.6 1
(AC221575) Bos taurus clone CH240-391G19, WORKING DRAFT SEQU... 46 1.6 1
(AC221308) Bos taurus clone CH240-403B6, WORKING DRAFT SEQUE... 46 1.6 1
(AC221275) Bos taurus clone CH240-401P14, WORKING DRAFT SEQU... 46 1.6 1
(AC220081) Bos taurus clone CH240-361P10, WORKING DRAFT SEQU... 46 1.6 1
(AC220045) Bos taurus clone CH240-315D10, WORKING DRAFT SEQU... 46 1.6 1
(AC219972) Bos taurus clone CH240-317J18, WORKING DRAFT SEQU... 46 1.6 1
(AC219900) Bos taurus clone CH240-318L5, WORKING DRAFT SEQUE... 46 1.6 1
(AC219892) Bos taurus clone CH240-319H4, WORKING DRAFT SEQUE... 46 1.6 1
(AC219495) Bos taurus clone CH240-332J14, WORKING DRAFT SEQU... 46 1.6 1
(AC218664) Bos taurus clone CH240-297P3, WORKING DRAFT SEQUE... 46 1.6 1
(AC214571) Bos taurus clone CH240-113A7, WORKING DRAFT SEQUE... 46 1.6 1
(AC203142) Spermophilus tridecemlineatus clone VMRC20-578E12... 46 1.6 1
(AC197319) Ornithorhynchus anatinus clone OA_Bb-349F22, WORK... 46 1.6 1
(AC189827) Aotus nancymaae clone CH258-405P17, WORKING DRAFT... 46 1.6 1
(AC184999) Bos taurus clone CH240-273I18, WORKING DRAFT SEQU... 46 1.6 1
(AC184920) Bos taurus clone CH240-200I15, WORKING DRAFT SEQU... 46 1.6 1
(AC182924) Bos taurus clone CH240-281J3, WORKING DRAFT SEQUE... 46 1.6 1
(AC174604) Bos taurus clone CH240-379P23, WORKING DRAFT SEQU... 46 1.6 1
(AC173545) Bos taurus clone CH240-90H21, WORKING DRAFT SEQUE... 46 1.6 1
(AC172802) Bos taurus clone CH240-280A8, WORKING DRAFT SEQUE... 46 1.6 1
(AC171232) Bos taurus clone CH240-275N15, WORKING DRAFT SEQU... 46 1.6 1
(AC170951) Bos taurus clone CH240-263D15, WORKING DRAFT SEQU... 46 1.6 1
(AC170793) Bos taurus clone CH240-236G1, WORKING DRAFT SEQUE... 46 1.6 1
(AC170791) Bos taurus clone CH240-240C21, WORKING DRAFT SEQU... 46 1.6 1
(AC170528) Bos taurus clone CH240-238G4, WORKING DRAFT SEQUE... 46 1.6 1
(AC170526) Bos taurus clone CH240-219N5, WORKING DRAFT SEQUE... 46 1.6 1
(AC170130) Bos taurus clone CH240-214I15, WORKING DRAFT SEQU... 46 1.6 1
(AC170013) Bos taurus clone CH240-235O14, WORKING DRAFT SEQU... 46 1.6 1
(AC169757) Bos taurus clone CH240-217J7, WORKING DRAFT SEQUE... 46 1.6 1
(AC168933) Bos taurus clone CH240-186C21, WORKING DRAFT SEQU... 46 1.6 1
(AC168085) Bos taurus clone CH240-159O21, WORKING DRAFT SEQU... 46 1.6 1
(AC167674) Bos taurus clone CH240-196I16, WORKING DRAFT SEQU... 46 1.6 1
(AC166296) Bos taurus clone CH240-43M1, WORKING DRAFT SEQUEN... 46 1.6 1
(AC166266) Bos taurus clone CH240-172B15, WORKING DRAFT SEQU... 46 1.6 1
(AC165843) Bos taurus clone CH240-130F6, WORKING DRAFT SEQUE... 46 1.6 1
(AC165488) Bos taurus clone CH240-172L1, WORKING DRAFT SEQUE... 46 1.6 1
(AC164022) Bos taurus clone CH240-142D18, *** SEQUENCING IN ... 46 1.6 1
(AC163556) Bos taurus clone CH240-136E23, *** SEQUENCING IN ... 46 1.6 1
(AC163060) Bos taurus clone CH240-117J22, WORKING DRAFT SEQU... 46 1.6 1
(AC162968) Bos taurus clone CH240-127J11, WORKING DRAFT SEQU... 46 1.6 1
(AC025630) Homo sapiens chromosome 2 clone RP11-383E11 map 2... 46 1.6 1
(AC023572) Homo sapiens chromosome 13 clone RP11-308I10 map ... 46 1.6 1
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 46 1.6 1
(AZ521966) 200PbF01 Pb MBN #21 Plasmodium berghei genomic 3'... 46 1.6 1
(AY759598) CH250-170c19 TJ Macaca mulatta genomic DNA Macaca... 46 1.6 1
(AQ530026) RPCI-11-348P2.TJ RPCI-11 Homo sapiens genomic clo... 46 1.6 1
(FI185246) Moalic-PERV_PK15-49-Mse-HEK_293-D15 Moalic_PERV_P... 46 1.6 1
(ET019076) MUGQ_CH252P325G06Sp6_CP608_025 CHORI-252 Vervet M... 46 1.6 1
(DX595093) Ciuffi-HIVchimera-HeLa-HIVmIN-AC166-5H04.rev HIVm... 46 1.6 1
(DX595092) Ciuffi-HIVchimera-HeLa-HIVmIN-AC166-5H04.fwd HIVm... 46 1.6 1
(DU371605) 1098268353418 CHORI-243 Ovis aries genomic clone ... 46 1.6 1
(DU278492) 1098448098258 CHORI-243 Ovis aries genomic clone ... 46 1.6 1
(DH388990) Oryzias latipes Fosmid clone:GOLWFno784_b24, forw... 46 1.6 1
(DH266655) Oryzias latipes Fosmid clone:GOLWFno594_f22, reve... 46 1.6 1
(DH036037) Oryzias latipes Fosmid clone:GOLWFno67_j10, forwa... 46 1.6 1
(CZ963682) 161892 Tomato MboI BAC Library Solanum lycopersic... 46 1.6 1
(CT172655) Sus scrofa genomic clone PigE-135J18, genomic sur... 46 1.6 1
(CR868459) Sus scrofa BES. 46 1.6 1
(CC213127) CH261-187O9_Sp6.1 CH261 Gallus gallus genomic clo... 46 1.6 1
(BZ943375) CH240_81K12.TJ CHORI-240 Bos taurus genomic clone... 46 1.6 1
(BZ936637) CH240_87C14.TJ CHORI-240 Bos taurus genomic clone... 46 1.6 1
(BZ923869) CH240_116L23.TJ CHORI-240 Bos taurus genomic clon... 46 1.6 1
(EH015581) USDA-FP_182417 Lysiphlebus testaceipes adult whol... 46 1.6 1
(EE873782) 020829OVMG1010B046HT OVMG Ovis aries cDNA, mRNA s... 46 1.6 1
(EE872714) 020829OVMG1006C082HT OVMG Ovis aries cDNA, mRNA s... 46 1.6 1
(EE859001) 010914OSTA107089HT OSTA Ovis aries cDNA, mRNA seq... 46 1.6 1
(EE846260) 010914OSAB025071HT OSAB Ovis aries cDNA, mRNA seq... 46 1.6 1
(EE836725) 010914OSAA019001HT OSAA Ovis aries cDNA, mRNA seq... 46 1.6 1
(EE791361) 020709OML22049076HT OML2 Ovis aries cDNA, mRNA se... 46 1.6 1
(DY496264) sh2P0018H02_F.ab1 adult sheep fracture callus 7d ... 46 1.6 1
(DY490191) sh1-xb10_l0.s2 adult sheep fracture callus pool O... 46 1.6 1
(DW081797) CLPX4653.b1_I11.ab1 CLP(XYZ) lettuce perennis Lac... 46 1.6 1
(AM735817) Cucumis melo subsp. melo EST, clone CI_18-B07-M13R. 46 1.6 1
(CR451049) Day 14 bovine embryos (bcai) clone bcai0011.f.04,... 46 1.6 1
(CR450989) Day 14 bovine embryos (bcai) clone bcai0012.f.04,... 46 1.6 1
(BG944362) ax49f03.x2 Hembase; Erythroid Progenitor Cells (L... 46 1.6 1
(AA602167) no98f09.s1 NCI_CGAP_Pr2 Homo sapiens cDNA clone I... 46 1.6 1
(GE749303) MUS16-O07.y1d-s SHGC-MUS Mytilus californianus cD... 46 1.6 1
(GE748329) MUS16-O07.x1d-t SHGC-MUS Mytilus californianus cD... 46 1.6 1
(EY517137) CAPF13540.rev CAPF Capitella sp. I ECS-2004 whole... 46 1.6 1
(BX465852) Zebrafish DNA sequence from clone CH211-139A5 in ... 36 1.6 6
(AC009152) Homo sapiens chromosome 16 clone RP11-567P19, com... 40 1.6 3
(CU928805) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.7 3
(CR376746) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.7 4
(AC181520) Strongylocentrotus purpuratus clone R3-63L24, WOR... 40 1.8 2
(AC024334) Homo sapiens chromosome 4 clone RP11-87M13 map 4,... 36 1.8 4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 1.9 7
(AP001683) Homo sapiens genomic DNA, chromosome 21q, section... 36 1.9 7
(CR387989) Zebrafish DNA sequence from clone DKEY-101P2 in l... 44 2.1 3
(AC117680) Mus musculus chromosome 1, clone RP23-435M2, comp... 42 2.1 3
(CR387930) Zebrafish DNA sequence from clone CH211-69P15 in ... 36 2.2 5
(AC142525) Homo sapiens chromosome 5 clone RP11-1275J23, com... 44 2.2 4
(AC199257) Chlorocebus aethiops clone CH252-106J10, WORKING ... 40 2.2 4
(AM428050) Vitis vinifera contig VV78X144826.10, whole genom... 34 2.3 4
(AC100092) Mus musculus chromosome 3, clone RP23-37H10, comp... 36 2.3 4
(FP236420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.6 6
(CT827865) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.6 5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 2.7 8
(EJ065755) 1095458038833 Global-Ocean-Sampling_GS-26-01-01-1... 34 2.8 3
(AC128449) Rattus norvegicus clone CH230-117D11, *** SEQUENC... 34 3.0 2
(BX005431) Zebrafish DNA sequence from clone CH211-214G2 in ... 34 3.0 2
(AC129268) Rattus norvegicus clone CH230-253K4, WORKING DRAF... 34 3.1 2
(AC161831) Bos taurus clone CH240-109B15, WORKING DRAFT SEQU... 40 3.1 4
(CU695147) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.1 2
(CT573405) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 3.1 2
(AC162156) Rhinolophus ferrumequinum clone VMRC7-309B6, WORK... 32 3.1 2
(CT725258) Danio rerio EST, clone ZF_mu_219h17 3'. 38 3.1 2
(AC185788) Bos taurus clone RP42-254A16, WORKING DRAFT SEQUE... 34 3.1 6
(CU468321) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.1 2
(AL954662) Mouse DNA sequence from clone RP23-348L16 on chro... 34 3.1 2
(AC216457) Populus trichocarpa clone POP036-I12, complete se... 40 3.1 4
(EJ911276) 1093018539445 Global-Ocean-Sampling_GS-30-02-01-1... 40 3.2 2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 34 3.3 14
(AC200077) Rhesus Macaque BAC CH250-20H18 () complete seque... 36 3.3 6
(EJ910615) 1093018536565 Global-Ocean-Sampling_GS-30-02-01-1... 40 3.3 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 3.5 8
(AC074000) Homo sapiens BAC clone CTD-2023N18 from 7, comple... 42 3.6 4
(CP000013) Borrelia garinii PBi, complete genome. 34 3.6 13
(AC023604) Mus musculus clone CT7-20K6, WORKING DRAFT SEQUEN... 42 3.7 3
(ET646524) JBVRC22TR JBVR Allium cepa genomic clone JBVRC_RD... 32 3.7 3
(CP000361) Arcobacter butzleri RM4018, complete genome. 32 3.7 16
(AM444812) Vitis vinifera contig VV78X036876.4, whole genome... 34 3.7 2
(AL844509) Plasmodium falciparum chromosome 13. 36 3.8 7
(AC126416) Mus musculus clone RP24-483C21, LOW-PASS SEQUENCE... 40 3.8 3
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 3.8 11
(FP102389) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 3.9 5
(BQ286520) ik31a12.x1 HR85 islet Homo sapiens cDNA clone IMA... 32 3.9 3
(CR388188) Zebrafish DNA sequence from clone DKEY-272F19 in ... 38 3.9 5
(AP001843) Homo sapiens genomic DNA, chromosome 18q12 clone:... 38 3.9 5
(AC149430) Populus trichocarpa clone Pop1-116F13, complete s... 36 4.1 6
(FI319346) AdH1158-CPY2-I21TR AdH1 Arachis duranensis genomi... 32 4.1 2
(ET803082) CHO_OF877xl16r1.ab1 CHO_OF Nicotiana tabacum geno... 34 4.1 2
(CU463949) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 4.1 7
(EK074550) 1092961022066 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.1 2
(L16771) Drosophila simulans suppressor of forked (su(f)) ge... 36 4.1 2
(AC150264) Aedes aegypti clone XX-41P5, *** SEQUENCING IN PR... 40 4.2 4
(AC119141) Rattus norvegicus clone CH230-270P14, *** SEQUENC... 40 4.4 4
(AC118798) Rattus norvegicus clone CH230-42M4, *** SEQUENCIN... 40 4.4 5
(AM481576) Vitis vinifera, whole genome shotgun sequence, co... 36 4.5 3
(AC133052) Rattus norvegicus clone CH230-225L10, WORKING DRA... 40 4.6 4
(AX392735) Sequence 25 from Patent WO0212526. 30 4.6 6
(AR707082) Sequence 25 from patent US 6933145. 30 4.6 6
(AC230454) Bos taurus clone CH240-508P18, WORKING DRAFT SEQU... 40 4.6 4
(AF284563) Homo sapiens chromosome 8 clone CTC-776F21 map 8p... 40 4.8 3
(AX457067) Sequence 28 from Patent WO0231186. 28 4.8 4
(FP003599) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 4.9 3
(AC214590) Bos taurus clone CH240-127E5, WORKING DRAFT SEQUE... 44 5.0 3
(CU856681) Zebrafish DNA sequence from clone CH73-361P23 in ... 38 5.0 4
(AC196753) Citrus sinensis clone CSRBBa-031G04, WORKING DRAF... 34 5.0 6
(DC235000) Plasmodium berghei strain ANKA cDNA clone:SG03182... 38 5.0 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 5.1 8
(AC079610) Homo sapiens BAC clone RP11-105N14 from 2, comple... 40 5.2 4
(CS374607) Sequence 710 from Patent WO2006034879. 44 5.4 2
(CS374335) Sequence 438 from Patent WO2006034879. 44 5.4 2
(AC092950) Homo sapiens chromosome 3 clone RP11-520H6, WORKI... 42 5.4 6
(AY572539) Neomaskellia andropogonis mitochondrion, complete... 34 5.5 4
(AC024073) Homo sapiens chromosome 10 clone RP11-394D15, com... 42 5.5 3
(AC099598) Mus musculus clone RP23-82B7, WORKING DRAFT SEQUE... 44 6.1 4
(FP016247) Zebrafish DNA sequence from clone CH73-124G13 in ... 44 6.2 1
(CU929113) Zebrafish DNA sequence from clone ZFOS-254H3 in l... 44 6.2 1
(CU469460) Zebrafish DNA sequence from clone CH211-76H4 in l... 44 6.2 1
(CU179751) Zebrafish DNA sequence from clone CH73-83K14 in l... 44 6.2 1
(CT737186) Zebrafish DNA sequence from clone DKEY-271J14 in ... 44 6.2 1
(CR848844) Zebrafish DNA sequence from clone DKEY-197A4 in l... 44 6.2 1
(CR392026) Zebrafish DNA sequence from clone DKEY-153N9 in l... 44 6.2 1
(CR388140) Zebrafish DNA sequence from clone CH211-190G11. 44 6.2 1
(CR376785) Zebrafish DNA sequence from clone CH211-266K8 in ... 44 6.2 1
(BX784024) Zebrafish DNA sequence from clone CH211-239J19 in... 44 6.2 1
(BX649455) Zebrafish DNA sequence from clone CH211-151J12 in... 44 6.2 1
(BX323887) Zebrafish DNA sequence from clone CH211-274C22 in... 44 6.2 1
(BX004795) Zebrafish DNA sequence from clone DKEY-29D12 in l... 44 6.2 1
(AL954697) Zebrafish DNA sequence from clone CH211-286K11 in... 44 6.2 1
(AL954656) Zebrafish DNA sequence from clone CH211-67N10 in ... 44 6.2 1
(AL953842) Zebrafish DNA sequence from clone DKEY-33I11 in l... 44 6.2 1
(AL627261) Zebrafish DNA sequence from clone RP71-1N11 in li... 44 6.2 1
(AL627132) Zebrafish DNA sequence from clone RP71-1H3 in lin... 44 6.2 1
(BX284685) Mouse DNA sequence from clone RP23-114J1 on chrom... 44 6.2 1
(AL845534) Mouse DNA sequence from clone RP23-223C17 on chro... 44 6.2 1
(AC163274) Mus musculus chromosome 1, clone RP23-202P19, com... 44 6.2 1
(AC131711) Mus musculus BAC clone RP23-192M18 from 6, comple... 44 6.2 1
(AC129205) Mus musculus BAC clone RP24-235I5 from chromosome... 44 6.2 1
(AC127300) Mus musculus BAC clone RP23-264J18 from chromosom... 44 6.2 1
(AC126243) Mus musculus BAC clone RP24-260I19 from chromosom... 44 6.2 1
(AC124709) Mus musculus BAC clone RP24-83P8 from chromosome ... 44 6.2 1
(AC123953) Mus musculus chromosome X clone RP23-234O13, comp... 44 6.2 1
(AC122380) Mus musculus BAC clone RP23-476C23 from 10, compl... 44 6.2 1
(AC115891) Mus musculus chromosome 10, clone RP24-421G4, com... 44 6.2 1
(AC110043) Mus musculus chromosome 10, clone RP23-296O20, co... 44 6.2 1
(AC107671) Mus musculus chromosome 7, clone RP23-112C18, com... 44 6.2 1
(AC099601) Mus musculus chromosome 7, clone RP23-240K1, comp... 44 6.2 1
(CT737395) Pan troglodytes chromosome X clone CH251-63F10 ma... 44 6.2 1
(CT476800) RP43-013D05, complete sequence. 44 6.2 1
(BS000534) Pan troglodytes chromosome Y clone:PTB-092H12, co... 44 6.2 1
(AC220983) Pongo abelii BAC clone CH276-269G8 from chromosom... 44 6.2 1
(AC198665) Pan troglodytes BAC clone CH251-646A4 from chromo... 44 6.2 1
(AC197457) MACACA MULATTA BAC clone CH250-194H22 from chromo... 44 6.2 1
(AC196937) Pan troglodytes BAC clone CH251-674N9 from chromo... 44 6.2 1
(AC196863) MACACA MULATTA BAC clone CH250-153I8 from chromos... 44 6.2 1
(AC188957) Pongo abelii chromosome UNK clone CH276-82H12, co... 44 6.2 1
(AC185242) Pan troglodytes BAC clone CH251-340I24 from chrom... 44 6.2 1
(AC184799) Pan troglodytes BAC clone CH251-623C19 from chrom... 44 6.2 1
(AC183835) Pan troglodytes BAC clone CH251-114G16 from chrom... 44 6.2 1
(AC174000) Pan troglodytes BAC clone CH251-2O15 from chromos... 44 6.2 1
(AC148313) Pan troglodytes BAC clone CH251-565C10 from chrom... 44 6.2 1
(AC147341) Pan troglodytes BAC clone CH251-31E16 from Y, com... 44 6.2 1
(AC146234) Pan troglodytes BAC clone CH251-199F20 from Y, co... 44 6.2 1
(AC146193) Pan troglodytes BAC clone CH251-483N24 from Y, co... 44 6.2 1
(AC142333) Pan troglodytes BAC clone RP43-32G1 from chromoso... 44 6.2 1
(Z97337) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c... 44 6.2 1
(EF678725) Picea sitchensis clone WS0296_I24 unknown mRNA. 44 6.2 1
(AM488112) Vitis vinifera, whole genome shotgun sequence, co... 44 6.2 1
(AL161540) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 6.2 1
(GC632050) Sequence 35500 from patent US 7432049. 44 6.2 1
(DL100129) Diagnosis of existing illnesses or that praedispo... 44 6.2 1
(DL100128) Diagnosis of existing illnesses or that praedispo... 44 6.2 1
(DL023494) Diagnosis of existing illnesses or that praedispo... 44 6.2 1
(DL023493) Diagnosis of existing illnesses or that praedispo... 44 6.2 1
(DJ387407) Diagnosis of Diseases Associated with Apoptosis. 44 6.2 1
(CQ690574) Sequence 35500 from Patent WO02070737. 44 6.2 1
(BD452555) Diagnosis of Diseases Associated with tumor suppr... 44 6.2 1
(AX348544) Sequence 2 from Patent WO0202807. 44 6.2 1
(AX346270) Sequence 1341 from Patent WO0200928. 44 6.2 1
(AX346220) Sequence 1291 from Patent WO0200928. 44 6.2 1
(AX344155) Sequence 2 from Patent WO0200926. 44 6.2 1
(AX281315) Sequence 57 from Patent WO0177164. 44 6.2 1
(AX251034) Sequence 2 from Patent WO0168912. 44 6.2 1
(GM635958) Sequence 14480 from Patent EP1942197. 44 6.2 1
(GM635957) Sequence 14479 from Patent EP1942197. 44 6.2 1
(AJ871176) Bos taurus ABCG2 gene, PKD2 gene and SPP1 gene, c... 44 6.2 1
(AC233258) Felis catus BAC clone FCAB-20H12 from chromosome ... 44 6.2 1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl... 44 6.2 1
(AM055942) Toxoplasma gondii RH, genomic DNA chromosome Ia. 44 6.2 1
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 44 6.2 1
(AF093009) Cryptosporidium parvum strain sC33 18S ribosomal ... 44 6.2 1
(AF093008) Cryptosporidium parvum strain C13 18S ribosomal R... 44 6.2 1
(AF070092) Plasmodium falciparum clone FCR-3/A2 merozoite ca... 44 6.2 1
(AF070091) Plasmodium falciparum clone HB3 merozoite capping... 44 6.2 1
(AF040725) Cryptosporidium parvum external transcribed space... 44 6.2 1
(AF015773) Cryptosporidium parvum small subunit ribosomal RN... 44 6.2 1
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 44 6.2 1
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 44 6.2 1
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 44 6.2 1
(AE001406) Plasmodium falciparum 3D7 chromosome 2 section 43... 44 6.2 1
(BX255934) Human DNA sequence from clone RP11-52F5 on chromo... 44 6.2 1
(AL732371) Human DNA sequence from clone RP11-2K15 on chromo... 44 6.2 1
(AL139000) Human DNA sequence from clone RP11-173M10 on chro... 44 6.2 1
(AC234627) Homo sapiens FOSMID clone ABC7-42506600M3 from ch... 44 6.2 1
(AC174439) Homo sapiens chromosome 6 clone WI2-1528P12, comp... 44 6.2 1
(AC133552) Homo sapiens chromosome 16 clone RP11-266L9, comp... 44 6.2 1
(AC112916) Homo sapiens X BAC RP11-765I9 (Roswell Park Cance... 44 6.2 1

>(BJ401889) Dictyostelium discoideum cDNA clone:dds19a20, 3' end,
single read.
Length = 614

Score = 775 bits (391), Expect(3) = 0.0
Identities = 391/391 (100%)
Strand = Plus / Minus


Query: 137 cctttatcagtcatctttgaaaaatttaaataaccaatagatggatcaacagtaaaacca 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctttatcagtcatctttgaaaaatttaaataaccaatagatggatcaacagtaaaacca 419


Query: 197 attccatctataagtaaatagtcaagtttaaatcttgaaattaatgattgttgtaatgtg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attccatctataagtaaatagtcaagtttaaatcttgaaattaatgattgttgtaatgtg 359


Query: 257 aatttttgaattgttgcttctttaccagagtttatgaattggatttccattgcattgact 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aatttttgaattgttgcttctttaccagagtttatgaattggatttccattgcattgact 299


Query: 317 cttttataccaatcttgattaattgaatctattgaaaaattcttgtaacctttttgagac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cttttataccaatcttgattaattgaatctattgaaaaattcttgtaacctttttgagac 239


Query: 377 atttcattatgaatttgaaaatttattaattctaaatttgggaataaatccattgatggt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atttcattatgaatttgaaaatttattaattctaaatttgggaataaatccattgatggt 179


Query: 437 acatttgtatcaatatgattgagtgataaactcaatgtatttatatatgtatttattttt 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acatttgtatcaatatgattgagtgataaactcaatgtatttatatatgtatttattttt 119


Query: 497 gttagttttggatatttaaaaccaggtaatg 527
|||||||||||||||||||||||||||||||
Sbjct: 118 gttagttttggatatttaaaaccaggtaatg 88

Score = 151 bits (76), Expect(3) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Minus


Query: 535 aacaattattctattaataactccctcaaaccaaattgaacttaatggcacagaaattga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aacaattattctattaataactccctcaaaccaaattgaacttaatggcacagaaattga 21


Query: 595 attaaattgancagttttc 613
|||||||||||||||||||
Sbjct: 20 attaaattgancagttttc 2

Score = 101 bits (51), Expect(3) = 0.0
Identities = 51/51 (100%)
Strand = Plus / Minus


Query: 1 attagaaattttacattttttaattagatcacaatctcctactatatgtct 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attagaaattttacattttttaattagatcacaatctcctactatatgtct 564

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 788,216,956
Number of extensions: 56008319
Number of successful extensions: 5180285
Number of sequences better than 10.0: 758
Length of query: 613
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 590
Effective length of database: 99,442,330,388
Effective search space: 58670974928920
Effective search space used: 58670974928920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.29
Homology vs Protein
Query= Contig-U03667-1 (Contig-U03667-1Q) /CSM_Contig/Contig-U03667-1Q.Seq.d
(613 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso... 325 8e-88
AC116984_80(AC116984|pid:none) Dictyostelium discoideum chromoso... 82 1e-18
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ... 84 3e-15
AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom... 45 0.002
CP001175_2273(CP001175|pid:none) Listeria monocytogenes HCC23, c... 35 2.2
CP000608_1297(CP000608|pid:none) Francisella tularensis subsp. t... 34 3.7
CP000915_1157(CP000915|pid:none) Francisella tularensis subsp. m... 34 3.7
CR940347_65(CR940347|pid:none) Theileria annulata strain Ankara ... 33 4.9
AM233362_1605(AM233362|pid:none) Francisella tularensis subsp. h... 33 4.9
CP000437_1281(CP000437|pid:none) Francisella tularensis subsp. h... 33 4.9
(Q2A2U8) RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase;... 33 8.3
AE016830_1876(AE016830|pid:none) Enterococcus faecalis V583, com... 33 8.3
(A7NCX8) RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase;... 33 8.3

>AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromosome
2 map 2567470-3108875 strain AX4, complete sequence.
Length = 473

Score = 325 bits (832), Expect = 8e-88
Identities = 161/164 (98%), Positives = 163/164 (99%)
Frame = -2

Query: 612 KTXQFNSISVPLSSIWFEGVINRIIVKKTLPGFKYPKLTKINTYINTLSLSLNHIDTNVP 433
KT QFNSISVPLSSIWFEGVINRIIVKKTLPGFKYPKLTKINTYINTLSLSLNHIDTNVP
Sbjct: 144 KTVQFNSISVPLSSIWFEGVINRIIVKKTLPGFKYPKLTKINTYINTLSLSLNHIDTNVP 203

Query: 432 SMDLFPNLELINFQIHNEMSQKGYKNFSIDSINQDWYKRVNAMEIQFINSGKEATIQKFT 253
SMDLFPNLELINFQIHNEMSQKGYKNFSIDSINQDWYKRVNAMEIQFINSGKEATIQKFT
Sbjct: 204 SMDLFPNLELINFQIHNEMSQKGYKNFSIDSINQDWYKRVNAMEIQFINSGKEATIQKFT 263

Query: 252 LQQSLISRFKLDYLLIDGIGFTVDPSIGYLNFSKMTDKGFVLYV 121
LQQSLISRFKLDYLLIDGIGFTVDPSIGYLNFSKMTDKGFVL++
Sbjct: 264 LQQSLISRFKLDYLLIDGIGFTVDPSIGYLNFSKMTDKGFVLHL 307

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 755,640,842
Number of extensions: 12079394
Number of successful extensions: 30206
Number of sequences better than 10.0: 13
Number of HSP's gapped: 30175
Number of HSP's successfully gapped: 14
Length of query: 204
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 81
Effective length of database: 659,166,577
Effective search space: 53392492737
Effective search space used: 53392492737
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.98 gvh: 0.69 alm: 17.64 top: 0.53 tms: -0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: cytoplasmic
28.0 %: mitochondrial
12.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: plasma membrane

>> prediction for Contig-U03667-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0