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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03664-1
Contig ID Contig-U03664-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Contig-U03664-1Q.Seq.d
TGGCCTACTGGAATTTTCAACACATTAACAATTTAAATAAATAATGGACG
CAATTAGAGCCCAACTTGATGAATTTTTAGGAAAGGATAGAAATTTACTT
CCAAAAGATAGAATTAAAGTTGAAAATGATTTCAATGACCCAGATATTTG
TAAATTCTTTTTATGTGGTTTATGTCCACATGAATTATTTACAAATGCAA
ATATTCGTGACTTAGGTCCATGCTCAAGATTACATGACGAAAATTGTGTA
AAGCAATACCAAAATAATAAAGATAAAGATAAGTATGATTATGAAAGAGA
ATGGGTTCGTGTAATTGAAGGTTTAATATCTGATAATGATAAAAAAATTA
AAAGAAATAAAGAAAGATTACTACAAAATCCAAACGGTGATGCTAATCAT
CATGGTGGACCAATTCAACAACAAAGTATAAGTCAATTAGATGATGAAGA
AGGTGGTTTACTTCCAGATAAAGAACAAAATAGTAAAATCACAGAGTTGG
ATCTAAAGATTCAAGAATTATTAAAAAAAGCAGAAGAATTAGGAGAAGAA
GGTCAAATTACAGAGGCTCAAGCATTAATGACTGAAGCTGATGAATTAAA
AAATCAAAAAGTTGAATTAGAAAAGATTGAACAAGAAAAGAATGAAAATA
AAAGAATGTCAGTTTGTGAAATTTGTGGAGCATTATTATTTGTTGGTGAT
AAAGAAAAGAGATCAATTAGTCATTTAGAGGGTAAAAAACATATTGGATT
CCAAAAGATTCGTGAAGTTATGGAAGAATATTACAAGAGTGGTAGAAGAG
CCAATTTGGGTAGAACAGATTTTTATAATGCACCACCACCACCAAGAGAT
TCATATAGAGATGATAGAAGATCATCATCATCATCATACCACGATATTGA
CGGTCGTAGAGATCATAGATATGGTGGTGGCAGTAGAGACTATGGTGGTA
GTGATAGAAGAGGAGGAGGTAACTATAATAATGGTAGAGGTAGTAGTAGA
GATAACTATAACAATATTAACAATAGCAGAGACTACAGAAATGATCATGG
TAAAGATTACGATAGAAAAAGAGAAAGAGATTATTATAATGATGATGATA
GAAGAAAGAGAGATAGAAATTATTAAATCATATTTTTATAATAATAAANA
ATAATAATAAAAAGAAATTTTTTAAAATAAAAAA
Gap no gap
Contig length 1184
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1197631
End point 1196460
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U03664
List of clone(s) 

est1=SFJ226E,1,1185
est2=VSD286F,150,408
Translated Amino Acid sequence 
gllefsth*qfk*IMDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPH
ELFTNANIRDLGPCSRLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNK
ERLLQNPNGDANHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEEL
GEEGQITEAQALMTEADELKNQKVELEKIEQEKNENKRMSVCEICGALLFVGDKEKRSIS
HLEGKKHIGFQKIREVMEEYYKSGRRANLGRTDFYNAPPPPRDSYRDDRRSSSSSYHDID
GRRDHRYGGGSRDYGGSDRRGGGNYNNGRGSSRDNYNNINNSRDYRNDHGKDYDRKRERD
YYNDDDRRKRDRNY*iifl***xiiikrnflk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgifntlti*inngrn*spt**ifrkg*kftskr*n*s*k*fq*pryl*ilfmwfmst
*iiykckys*lrsmlkit*rklckaipk**r*r*v*l*krmgscn*rfni****kn*kk*
rkittkskr*c*sswwtnsttkyksir**rrwftsr*rtk**nhrvgskdsriikksrri
rrrrsnyrgssind*s**ikksks*irkd*trke*k*knvsl*nlwsiiicw**rkein*
sfrg*ktywipkds*sygrilqew*ksqfg*nrfl*cttttkrfi*r**kiiiiiipry*
rs*rs*iwwwq*rlww***krrr*l**w*r***r*l*qy*q*qrlqk*sw*rlr*kkrkr
ll*****kker*kllnhifiiixnnnkkkffkik


Frame B:
gllefsth*qfk*IMDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPH
ELFTNANIRDLGPCSRLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNK
ERLLQNPNGDANHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEEL
GEEGQITEAQALMTEADELKNQKVELEKIEQEKNENKRMSVCEICGALLFVGDKEKRSIS
HLEGKKHIGFQKIREVMEEYYKSGRRANLGRTDFYNAPPPPRDSYRDDRRSSSSSYHDID
GRRDHRYGGGSRDYGGSDRRGGGNYNNGRGSSRDNYNNINNSRDYRNDHGKDYDRKRERD
YYNDDDRRKRDRNY*iifl***xiiikrnflk*k


Frame C:
aywnfqhinnlnk*wtqlepnlmnf*erieiyfqkielklkmismtqifvnsfyvvyvhm
nylqmqifvt*vhaqdymtkiv*sntkiikikismimkengfv*lkv*ylimikklkeik
kdyykiqtvmliimvdqfnnkv*vn*mmkkvvyfqiknkivksqswi*rfkny*kkqkn*
ekkvklqrlkh**lklmn*kikkln*krlnkkrmkikecqfvkfvehyyllvikkrdqlv
i*rvknildskrfvklwknitrvveepiwveqifimhhhhqeihiemiedhhhhhttilt
vveiidmvvavetmvvvieeeevtiimvevvveititiltiaettemimvkitiekekei
iimmmieereieiiksyfynnkx***keif*nkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03664-1 (Contig-U03664-1Q)
/CSM_Contig/Contig-U03664-1Q.Seq.d
         (1184 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Conti...  1090  0.0
Contig-U12423-1 (Contig-U12423-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11743-1 (Contig-U11743-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U05246-1 (Contig-U05246-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13505-1 (Contig-U13505-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12625-1 (Contig-U12625-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12068-1 (Contig-U12068-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11294-1 (Contig-U11294-1Q) /CSM_Contig/Conti...    36  0.084

>Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Contig-U03664-1Q.Seq.d
          Length = 1184

 Score = 1090 bits (550), Expect = 0.0
 Identities = 578/592 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcctactggaattttcaacacattaacaatttaaataaataatggacgcaattagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggcctactggaattttcaacacattaacaatttaaataaataatggacgcaattagagc 60

                                                                       
Query: 61  ccaacttgatgaatttttaggaaaggatagaaatttacttccaaaagatagaattaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccaacttgatgaatttttaggaaaggatagaaatttacttccaaaagatagaattaaagt 120

                                                                       
Query: 121 tgaaaatgatttcaatgacccagatatttgtaaattctttttatgtggtttatgtccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaaatgatttcaatgacccagatatttgtaaattctttttatgtggtttatgtccaca 180

                                                                       
Query: 181 tgaattatttacaaatgcaaatattcgtgacttaggtccatgctcaagattacatgacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaattatttacaaatgcaaatattcgtgacttaggtccatgctcaagattacatgacga 240

                                                                       
Query: 241 aaattgtgtaaagcaataccaaaataataaagataaagataagtatgattatgaaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattgtgtaaagcaataccaaaataataaagataaagataagtatgattatgaaagaga 300

                                                                       
Query: 301 atgggttcgtgtaattgaaggtttaatatctgataatgatnnnnnnnttaaaagaaataa 360
           ||||||||||||||||||||||||||||||||||||||||       |||||||||||||
Sbjct: 301 atgggttcgtgtaattgaaggtttaatatctgataatgataaaaaaattaaaagaaataa 360

                                                                       
Query: 361 agaaagattactacaaaatccaaacggtgatgctaatcatcatggtggaccaattcaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agaaagattactacaaaatccaaacggtgatgctaatcatcatggtggaccaattcaaca 420

                                                                       
Query: 421 acaaagtataagtcaattagatgatgaagaaggtggtttacttccagataaagaacaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaaagtataagtcaattagatgatgaagaaggtggtttacttccagataaagaacaaaa 480

                                                                       
Query: 481 tagtaaaatcacagagttggatctaaagattcaagaattattnnnnnnngcagaagaatt 540
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 481 tagtaaaatcacagagttggatctaaagattcaagaattattaaaaaaagcagaagaatt 540

                                                               
Query: 541 aggagaagaaggtcaaattacagaggctcaagcattaatgactgaagctgat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggagaagaaggtcaaattacagaggctcaagcattaatgactgaagctgat 592


 Score =  430 bits (217), Expect = e-120
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                        
Query: 888  accacgatattgacggtcgtagagatcatagatatggtggtggcagtagagactatggtg 947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  accacgatattgacggtcgtagagatcatagatatggtggtggcagtagagactatggtg 947

                                                                        
Query: 948  gtagtgatagaagaggaggaggtaactataataatggtagaggtagtagtagagataact 1007
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  gtagtgatagaagaggaggaggtaactataataatggtagaggtagtagtagagataact 1007

                                                                        
Query: 1008 ataacaatattaacaatagcagagactacagaaatgatcatggtaaagattacgatagaa 1067
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ataacaatattaacaatagcagagactacagaaatgatcatggtaaagattacgatagaa 1067

                                                 
Query: 1068 aaagagaaagagattattataatgatgatgatagaag 1104
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1068 aaagagaaagagattattataatgatgatgatagaag 1104


 Score =  424 bits (214), Expect = e-119
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                       
Query: 657 tgtcagtttgtgaaatttgtggagcattattatttgttggtgataaagaaaagagatcaa 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgtcagtttgtgaaatttgtggagcattattatttgttggtgataaagaaaagagatcaa 716

                                                                       
Query: 717 ttagtcatttagagggtaaaaaacatattggattccaaaagattcgtgaagttatggaag 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttagtcatttagagggtaaaaaacatattggattccaaaagattcgtgaagttatggaag 776

                                                                       
Query: 777 aatattacaagagtggtagaagagccaatttgggtagaacagatttttataatgcaccac 836
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aatattacaagagtggtagaagagccaatttgggtagaacagatttttataatgcaccac 836

                                             
Query: 837 caccaccaagagattcatatagagatgatagaag 870
           ||||||||||||||||||||||||||||||||||
Sbjct: 837 caccaccaagagattcatatagagatgatagaag 870


>Contig-U12423-1 (Contig-U12423-1Q) /CSM_Contig/Contig-U12423-1Q.Seq.d
          Length = 1436

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 261  aaaataataaagataaagata 281
            |||||||||||||||||||||
Sbjct: 1317 aaaataataaagataaagata 1337


>Contig-U11743-1 (Contig-U11743-1Q) /CSM_Contig/Contig-U11743-1Q.Seq.d
          Length = 1254

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 100  tccaaaagatagaattaaa 118
            |||||||||||||||||||
Sbjct: 1182 tccaaaagatagaattaaa 1200


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,077
Number of Sequences: 6905
Number of extensions: 23077
Number of successful extensions: 3065
Number of sequences better than 10.0: 366
length of query: 1184
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1168
effective length of database: 5,564,391
effective search space: 6499208688
effective search space used: 6499208688
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 5
Homology vs DNA 
Query= Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Contig-U03664-1Q.Seq.d
         (1184 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ389573) Dictyostelium discoideum cDNA clone:dds19c08, 5' ...   674   0.0    3
(BJ401745) Dictyostelium discoideum cDNA clone:dds19c08, 3' ...   422   0.0    4
(AU263781) Dictyostelium discoideum vegetative cDNA clone:VS...   357   e-100  2
(BF545050) UI-R-C2p-rp-d-07-0-UI.r1 UI-R-C2p Rattus norvegic...    38   0.41   2
(DN934254) AGENCOURT_49985280 NCI_CGAP_Pr49 Rattus norvegicu...    38   0.66   2
(EK454148) 1095467873961 Global-Ocean-Sampling_GS-32-01-01-1...    36   0.71   3
(CR926129) Zebrafish DNA sequence from clone DKEY-261J15 in ...    48   0.78   1
(AC209371) Zea mays chromosome 6 clone CH201-237I17; ZMMBBc0...    48   0.78   1
(AC199530) Zea mays chromosome 6 clone CH201-497L21; ZMMBBc0...    48   0.78   1
(BC166769) Rattus norvegicus TAF15 RNA polymerase II, TATA b...    38   2.0    2
(EK073629) 1092961014006 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.0    3
(CG969151) MBEAW04TFB mth2 Medicago truncatula genomic clone...    34   2.0    3
(BJ335060) Dictyostelium discoideum cDNA clone:dda48e20, 5' ...    40   2.1    2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   2.3    12
(EJ065389) 1095458035045 Global-Ocean-Sampling_GS-26-01-01-1...    34   2.3    3
(AM054621) Isotricha prostoma EST, clone Ip02_E09.                 34   2.4    3
(BJ392569) Dictyostelium discoideum cDNA clone:dds28k06, 5' ...    40   2.4    2
(CT571252) Mouse DNA sequence from clone RP24-91J7 on chromo...    46   3.1    1
(AC159254) Mus musculus BAC clone RP24-112C23 from chromosom...    46   3.1    1
(AC232784) Lama pacos clone CH246-216B4, WORKING DRAFT SEQUE...    46   3.1    1
(AC196486) Zea mays chromosome 7 clone CH201-201H4; ZMMBBc02...    46   3.1    1
(DX501175) Cpl43138 Papaya Genomic DNA BAC Library Carica pa...    46   3.1    1
(DX481667) Cpl23328 Papaya Genomic DNA BAC Library Carica pa...    46   3.1    1
(DX319461) OR_ABa0236P03.f OR_ABa Oryza ridleyi genomic clon...    46   3.1    1
(DH301985) Oryzias latipes Fosmid clone:GOLWFno651_c10, forw...    46   3.1    1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   3.2    9
(AC117627) Mus musculus chromosome 1, clone RP23-116N6, comp...    40   3.8    5
(AC198010) Zea mays chromosome 3 clone ZMMBBb-618M5; ZMMBBb0...    36   4.4    5
(CP000976) Borrelia duttonii Ly, complete genome.                  34   4.6    14
(AL035476) Plasmodium falciparum MAL4P3.                           36   5.6    9
(EJ053543) 1095456014409 Global-Ocean-Sampling_GS-26-01-01-1...    34   6.0    3
(BG816822) daf70h03.x1 NICHD_XGC_Eye1 Xenopus laevis cDNA cl...    40   6.5    2
(AC198825) Nomascus leucogenys leucogenys clone CH271-326K11...    38   6.5    7
(AL451133) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   6.6    2
(AC153571) Mus musculus 10 BAC RP23-309H16 (Roswell Park Can...    42   8.0    2
(BJ433672) Dictyostelium discoideum cDNA clone:ddv22h18, 3' ...    40   9.6    2
(DN268076) LIB30320_004_E01_SP6_1 LIB30320 Canis lupus famil...    38   9.9    2

>(BJ389573) Dictyostelium discoideum cDNA clone:dds19c08, 5' end,
           single read.
          Length = 653

 Score =  674 bits (340), Expect(3) = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus


Query: 1   tggcctactggaattttcaacacattaacaatttaaataaataatggacgcaattagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggcctactggaattttcaacacattaacaatttaaataaataatggacgcaattagagc 60


Query: 61  ccaacttgatgaatttttaggaaaggatagaaatttacttccaaaagatagaattaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccaacttgatgaatttttaggaaaggatagaaatttacttccaaaagatagaattaaagt 120


Query: 121 tgaaaatgatttcaatgacccagatatttgtaaattctttttatgtggtttatgtccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaaaatgatttcaatgacccagatatttgtaaattctttttatgtggtttatgtccaca 180


Query: 181 tgaattatttacaaatgcaaatattcgtgacttaggtccatgctcaagattacatgacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaattatttacaaatgcaaatattcgtgacttaggtccatgctcaagattacatgacga 240


Query: 241 aaattgtgtaaagcaataccaaaataataaagataaagataagtatgattatgaaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattgtgtaaagcaataccaaaataataaagataaagataagtatgattatgaaagaga 300


Query: 301 atgggttcgtgtaattgaaggtttaatatctgataatgat 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgggttcgtgtaattgaaggtttaatatctgataatgat 340

 Score =  274 bits (138), Expect(3) = 0.0
 Identities = 138/138 (100%)
 Strand = Plus / Plus


Query: 385 cggtgatgctaatcatcatggtggaccaattcaacaacaaagtataagtcaattagatga 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cggtgatgctaatcatcatggtggaccaattcaacaacaaagtataagtcaattagatga 444


Query: 445 tgaagaaggtggtttacttccagataaagaacaaaatagtaaaatcacagagttggatct 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaagaaggtggtttacttccagataaagaacaaaatagtaaaatcacagagttggatct 504


Query: 505 aaagattcaagaattatt 522
           ||||||||||||||||||
Sbjct: 505 aaagattcaagaattatt 522

 Score =  123 bits (62), Expect(3) = 0.0
 Identities = 62/62 (100%)
 Strand = Plus / Plus


Query: 530 gcagaagaattaggagaagaaggtcaaattacagaggctcaagcattaatgactgaagct 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gcagaagaattaggagaagaaggtcaaattacagaggctcaagcattaatgactgaagct 589


Query: 590 ga 591
           ||
Sbjct: 590 ga 591

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,206,869,256
Number of extensions: 80801693
Number of successful extensions: 7578107
Number of sequences better than 10.0: 38
Length of query: 1184
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1160
Effective length of database: 99,340,224,878
Effective search space: 115234660858480
Effective search space used: 115234660858480
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Contig-U03664-1Q.Seq.d
         (1184 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XQ8) RecName: Full=Protein CROP homolog;                          530   e-149
BC117592_1(BC117592|pid:none) Danio rerio zgc:136380, mRNA (cDNA...   155   2e-36
BC095066_1(BC095066|pid:none) Danio rerio hypothetical protein L...   155   3e-36
BC076180_1(BC076180|pid:none) Danio rerio hypothetical protein L...   153   1e-35
(Q3SX41) RecName: Full=Cisplatin resistance-associated overexpre...   152   2e-35
AK014362_1(AK014362|pid:none) Mus musculus 17 days embryo head c...   152   2e-35
AK151228_1(AK151228|pid:none) Mus musculus bone marrow macrophag...   152   2e-35
BC047043_1(BC047043|pid:none) Homo sapiens cisplatin resistance-...   152   2e-35
BC002925_1(BC002925|pid:none) Homo sapiens cisplatin resistance-...   151   4e-35
BC123281_1(BC123281|pid:none) Xenopus laevis hypothetical protei...   150   7e-35
BC060393_1(BC060393|pid:none) Xenopus laevis hypothetical protei...   150   9e-35
BC090581_1(BC090581|pid:none) Xenopus tropicalis cisplatin resis...   150   9e-35
CR761505_1(CR761505|pid:none) Xenopus tropicalis finished cDNA, ...   150   9e-35
AK001925_1(AK001925|pid:none) Homo sapiens cDNA FLJ11063 fis, cl...   150   1e-34
AK290540_1(AK290540|pid:none) Homo sapiens cDNA FLJ77715 complet...   148   4e-34
AB173553_1(AB173553|pid:none) Macaca fascicularis brain cDNA clo...   147   7e-34
CR940348_445(CR940348|pid:none) Theileria annulata strain Ankara...   134   5e-30
AY815653_1(AY815653|pid:none) Schistosoma japonicum SJCHGC00937 ...   130   1e-28
T32781(T32781)hypothetical protein C50D2.8 - Caenorhabditis eleg...   127   8e-28
AK063477_1(AK063477|pid:none) Oryza sativa Japonica Group cDNA c...   121   6e-26
FN357362_8(FN357362|pid:none) Schistosoma mansoni genome sequenc...   107   8e-22
AK019464_1(AK019464|pid:none) Mus musculus 18 days pregnant adul...   103   2e-20
BT076456_1(BT076456|pid:none) Caligus rogercresseyi clone crog-e...   102   3e-20
AC006714_6(AC006714|pid:none) Caenorhabditis elegans cosmid Y119...   101   5e-20
AE014296_3093(AE014296|pid:none) Drosophila melanogaster chromos...    99   4e-19
AF318301_1(AF318301|pid:none) Mus musculus CGI-74-like SR-rich p...    95   4e-18
(Q7TNC4) RecName: Full=Putative RNA-binding protein Luc7-like 2;...    95   4e-18
AK001519_1(AK001519|pid:none) Homo sapiens cDNA FLJ10657 fis, cl...    95   6e-18
BC043766_1(BC043766|pid:none) Xenopus laevis CGI-74 protein, mRN...    94   1e-17
AF151832_1(AF151832|pid:none) Homo sapiens CGI-74 protein mRNA, ...    94   1e-17
BC075157_1(BC075157|pid:none) Xenopus laevis MGC82047 protein, m...    94   1e-17
EU832106_1(EU832106|pid:none) Synthetic construct Homo sapiens c...    94   1e-17
AK093864_1(AK093864|pid:none) Homo sapiens cDNA FLJ36545 fis, cl...    94   1e-17
CP000498_41(CP000498|pid:none) Pichia stipitis CBS 6054 chromoso...    94   1e-17
AJ719617_1(AJ719617|pid:none) Gallus gallus mRNA for hypothetica...    93   2e-17
BC074578_1(BC074578|pid:none) Xenopus tropicalis LUC7-like (S. c...    92   4e-17
AK160293_1(AK160293|pid:none) Mus musculus 8 days embryo whole b...    92   5e-17
(Q9NQ29) RecName: Full=Putative RNA-binding protein Luc7-like 1;...    92   5e-17
(Q9CYI4) RecName: Full=Putative RNA-binding protein Luc7-like 1;       92   5e-17
AK010539_1(AK010539|pid:none) Mus musculus ES cells cDNA, RIKEN ...    92   5e-17
BC123355_1(BC123355|pid:none) Xenopus laevis Luc7 homolog (S. ce...    92   5e-17
AJ404326_2(AJ404326|pid:none) Homo sapiens SR+89 gene.  &AK00109...    92   5e-17
BC118419_1(BC118419|pid:none) Bos taurus LUC7-like (S. cerevisia...    92   5e-17
BC083270_1(BC083270|pid:none) Danio rerio LUC7-like (S. cerevisi...    91   6e-17
(Q9USM4) RecName: Full=U1 snRNP-associated protein usp106; AltNa...    91   1e-16
AK147889_1(AK147889|pid:none) Mus musculus melanocyte cDNA, RIKE...    90   1e-16
AF151817_1(AF151817|pid:none) Homo sapiens CGI-59 protein mRNA, ...    90   1e-16
EU969617_1(EU969617|pid:none) Zea mays clone 333223 RNA-binding ...    89   2e-16
BT034045_1(BT034045|pid:none) Zea mays full-length cDNA clone ZM...    89   2e-16
AP007154_520(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    88   5e-16
BC067970_1(BC067970|pid:none) Xenopus tropicalis LUC7-like 2, mR...    88   5e-16
AK223084_1(AK223084|pid:none) Homo sapiens mRNA for LUC7-like is...    88   7e-16
BT041923_1(BT041923|pid:none) Zea mays full-length cDNA clone ZM...    88   7e-16
BT040858_1(BT040858|pid:none) Zea mays full-length cDNA clone ZM...    88   7e-16
CU633895_656(CU633895|pid:none) Podospora anserina genomic DNA c...    87   9e-16
AM920427_841(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    86   2e-15
BC065198_1(BC065198|pid:none) Homo sapiens LUC7-like (S. cerevis...    86   3e-15
AE016817_671(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    85   6e-15
AC009895_24(AC009895|pid:none) Arabidopsis thaliana chromosome I...    85   6e-15
DQ019624_1(DQ019624|pid:none) Triticum aestivum pre-mRNA process...    84   1e-14
AY052667_1(AY052667|pid:none) Arabidopsis thaliana AT5g17440/K3M...    83   2e-14
CR380958_304(CR380958|pid:none) Candida glabrata strain CBS138 c...    81   6e-14
(Q07508) RecName: Full=Protein LUC7;  &S67623(S67623;S67629) &Z7...    81   8e-14
FN392319_249(FN392319|pid:none) Pichia pastoris GS115 chromosome...    80   1e-13
(Q09217) RecName: Full=Uncharacterized protein B0495.8;  &E88216...    75   3e-12
CU928180_660(CU928180|pid:none) Kluyveromyces thermotolerans str...    75   5e-12
CR382126_314(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    74   1e-11
FN357318_40(FN357318|pid:none) Schistosoma mansoni genome sequen...    73   2e-11
BC020058_1(BC020058|pid:none) Mus musculus LUC7-like 2 (S. cerev...    71   7e-11
AK153527_1(AK153527|pid:none) Mus musculus bone marrow macrophag...    71   7e-11
BC089960_1(BC089960|pid:none) Rattus norvegicus LUC7-like (S. ce...    71   9e-11
AB168707_1(AB168707|pid:none) Macaca fascicularis testis cDNA cl...    70   2e-10
BC034135_1(BC034135|pid:none) Mus musculus Luc7 homolog (S. cere...    70   2e-10
U78868_1(U78868|pid:none) Arabidopsis thaliana putative aspartat...    67   2e-09
CR382132_1138(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    67   2e-09
FN318546_1(FN318546|pid:none) Schistosoma japonicum isolate Anhu...    65   5e-09
CP000600_271(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...    63   2e-08
EU973649_1(EU973649|pid:none) Zea mays clone 403543 unknown mRNA.      62   5e-08
CR954214_288(CR954214|pid:none) Ostreococcus tauri strain OTTH05...    59   3e-07
AK084714_1(AK084714|pid:none) Mus musculus 13 days embryo heart ...    58   8e-07
AY810441_1(AY810441|pid:none) Schistosoma japonicum SJCHGC03364 ...    57   2e-06
AL391150_1(AL391150|pid:none) Arabidopsis thaliana DNA chromosom...    55   6e-06
AL590449_83(AL590449|pid:none) chromosome X of strain GB-M1 of E...    54   8e-06
AX970427_1(AX970427|pid:none) Sequence 1230 from Patent EP1104808.     52   3e-05
AX970071_1(AX970071|pid:none) Sequence 874 from Patent EP1104808.      50   2e-04
AK140271_1(AK140271|pid:none) Mus musculus adult male corpora qu...    49   5e-04
U78869_1(U78869|pid:none) Arabidopsis thaliana putative aspartat...    48   6e-04
AY088574_1(AY088574|pid:none) Arabidopsis thaliana clone 801 mRN...    48   6e-04
Z29443_1(Z29443|pid:none) Caenorhabditis elegans Cosmid T07C4, c...    40   0.12
AK221229_1(AK221229|pid:none) Arabidopsis thaliana mRNA for prot...    39   0.36
AB026643_9(AB026643|pid:none) Arabidopsis thaliana genomic DNA, ...    39   0.36
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    39   0.47
CR382399_47(CR382399|pid:none) Plasmodium falciparum chromosome ...    38   0.81
(P02564) RecName: Full=Myosin-7; AltName: Full=Myosin heavy chai...    37   1.4
CP000703_337(CP000703|pid:none) Staphylococcus aureus subsp. aur...    37   1.4
AY954966_7(AY954966|pid:none) Bacteriophage 88, complete genome....    37   1.4
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.4
AM910993_44(AM910993|pid:none) Plasmodium knowlesi strain H chro...    36   2.4
S14556(S14556;S14548) asparagine-rich protein (clone 18C1) - mal...    36   2.4
CR382138_863(CR382138|pid:none) Debaryomyces hansenii strain CBS...    36   2.4
CR382135_49(CR382135|pid:none) Debaryomyces hansenii strain CBS7...    36   3.1
FN357480_22(FN357480|pid:none) Schistosoma mansoni genome sequen...    36   3.1
A13475_1(A13475|pid:none) P.falciparum gene for 41kd antigen, cl...    36   3.1
AL844509_34(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    35   4.0
CP000127_1237(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...    35   4.0
AB009883_1(AB009883|pid:none) Nicotiana tabacum mRNA for KED, co...    35   5.2
CP000569_453(CP000569|pid:none) Actinobacillus pleuropneumoniae ...    35   5.2
AF071804_1(AF071804|pid:none) Streptococcus pneumoniae strain BG...    35   5.2
BC095275_1(BC095275|pid:none) Danio rerio hypothetical protein L...    35   5.2
CP001091_534(CP001091|pid:none) Actinobacillus pleuropneumoniae ...    35   5.2
CP000687_459(CP000687|pid:none) Actinobacillus pleuropneumoniae ...    35   6.8
AX647833_1(AX647833|pid:none) Sequence 2025 from Patent EP1270724.     34   8.9
AC006592_2(AC006592|pid:none) Arabidopsis thaliana chromosome 2 ...    34   8.9
BC115100_1(BC115100|pid:none) Danio rerio hypothetical protein L...    34   8.9
BC155869_1(BC155869|pid:none) Xenopus tropicalis Leo1, Paf1/RNA ...    34   8.9

>(Q54XQ8) RecName: Full=Protein CROP homolog;
          Length = 360

 Score =  530 bits (1366), Expect = e-149
 Identities = 268/336 (79%), Positives = 269/336 (80%)
 Frame = +2

Query: 44   MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC 223
            MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC
Sbjct: 1    MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC 60

Query: 224  SRLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHH 403
            S+LHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHH
Sbjct: 61   SKLHDENCVKQYQNNKDKDKYDYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHH 120

Query: 404  GGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQXXXXXXXXXXXXXQITEAQALMT 583
            GGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQ             QITEAQALMT
Sbjct: 121  GGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQALMT 180

Query: 584  EADELKNQKVELEKIEQEKNENKRMSVCEICGALLFVGDKEKRSISHLEGKKHIGFQKIR 763
            EADELKNQKVELEKIEQEKNENKRMSVCEICGALLFVGDKEKRSISHLEGKKHIGFQKIR
Sbjct: 181  EADELKNQKVELEKIEQEKNENKRMSVCEICGALLFVGDKEKRSISHLEGKKHIGFQKIR 240

Query: 764  EVMEEYYKSGRRANLGRTDFYNAXXXXXXXXXXXXXXXXXXXHDIDXXXXXXXXXXXXXX 943
            EVMEEYYKSGRRANLGRTDFYNA                   HDID
Sbjct: 241  EVMEEYYKSGRRANLGRTDFYNAPPPPRDSYRDDRRSSSSSYHDIDGRRDHRYGGGSRDY 300

Query: 944  XXXXXXXXXXXXXXXXXXXXXYNNINNSRDYRNDHG 1051
                                 YNNINNSRDYRNDHG
Sbjct: 301  GGSDRRGGGNYNNGRGSSRDNYNNINNSRDYRNDHG 336

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,236,512,891
Number of extensions: 22151347
Number of successful extensions: 76235
Number of sequences better than 10.0: 115
Number of HSP's gapped: 75897
Number of HSP's successfully gapped: 128
Length of query: 394
Length of database: 1,061,185,681
Length adjustment: 131
Effective length of query: 263
Effective length of database: 633,018,993
Effective search space: 166483995159
Effective search space used: 166483995159
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.21  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03664-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0