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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03648-1
Contig ID Contig-U03648-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03648-1 (Contig-U03648-1Q) /CSM_Contig/Contig-U03648-1Q.Seq.d
AAAAACATTGTTTTAAAAACCCTTCCTCCCCCTATATTCATATAGAAAAA
ATGGATAAAAGAAAACAATCAGATTATGATAATGGTAAATCAAAACCAAC
AAATGGATCAAAAACAACCAAATTTAATTTAATTAAAATCATTATTAGAA
ATTTATTAATTGGTATTTTATTAATGTTGGTATTAAATACAATTAGATTT
ACATCAAAACAACCAAAAGTTGAAATATTATCACCAGATCATATAGATTC
ATTTACAACATTATCTGATATAGAATTAGCTCAAAGATTAGCAAAAGCAA
CAACATTTAAAACAATTTCATTTGGAGAATCAGATGAATTCGATCAATAT
GAACCAGAATTTTTAAAATTTCATGAATTTTTAAAAATAACATTTCCACA
AAGTTCATAAATATTTAAAATTAAATATTATTGCAAATTATAGTTTAGTT
TATAATTGGAAAGGNTTAGATGAAAGTTTAAAACCAATCCTAT
Gap no gap
Contig length 493
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1231302
End point 1230809
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U03648
List of clone(s) 

est1=SFI577F,1,494
est2=VSG812F,8,446
Translated Amino Acid sequence 
KHCFKNPSSPYIHIEKMDKRKQSDYDNGKSKPTNGSKTTKFNLIKIIIRNLLIGILLMLV
LNTIRFTSKQPKVEILSPDHIDSFTTLSDIELAQRLAKATTFKTISFGESDEFDQYEPEF
LKFHEFLKITFPQSS*ifkikyyckl*fsl*lerxr*kfktnp
Translated Amino Acid sequence (All Frames) 
Frame A:
knivlktlpppifi*kkwikennqimimvnqnqqmdqkqpnli*lkslleiy*lvfy*cw
y*iqldlhqnnqklkyyhqii*ihlqhyli*n*lkd*qkqqhlkqfhlenqmnsinmnqn
f*nfmnf*k*hfhkvhkylklniianyslvynwkgldeslkpil


Frame B:
ktlf*kpflplysyrkng*kktirl**w*iktnkwiknnqi*fn*nhy*kfinwyfinvg
ikyn*iyikttks*niitrsyrfiynii*yrisskisksnni*nnfiwrir*irsi*tri
fkis*ifknnistkfini*n*illqiiv*fiigkx*mkv*nqsy


Frame C:
KHCFKNPSSPYIHIEKMDKRKQSDYDNGKSKPTNGSKTTKFNLIKIIIRNLLIGILLMLV
LNTIRFTSKQPKVEILSPDHIDSFTTLSDIELAQRLAKATTFKTISFGESDEFDQYEPEF
LKFHEFLKITFPQSS*ifkikyyckl*fsl*lerxr*kfktnp
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03648-1 (Contig-U03648-1Q)
/CSM_Contig/Contig-U03648-1Q.Seq.d
         (493 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03648-1 (Contig-U03648-1Q) /CSM_Contig/Conti...   599  e-171
Contig-U09628-1 (Contig-U09628-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U13296-1 (Contig-U13296-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09604-1 (Contig-U09604-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09020-1 (Contig-U09020-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U08261-1 (Contig-U08261-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U05707-1 (Contig-U05707-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12427-1 (Contig-U12427-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U09498-1 (Contig-U09498-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U06413-1 (Contig-U06413-1Q) /CSM_Contig/Conti...    36  0.034

>Contig-U03648-1 (Contig-U03648-1Q) /CSM_Contig/Contig-U03648-1Q.Seq.d
          Length = 493

 Score =  599 bits (302), Expect = e-171
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 189 acaattagatttacatcaaaacaaccaaaagttgaaatattatcaccagatcatatagat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acaattagatttacatcaaaacaaccaaaagttgaaatattatcaccagatcatatagat 248

                                                                       
Query: 249 tcatttacaacattatctgatatagaattagctcaaagattagcaaaagcaacaacattt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcatttacaacattatctgatatagaattagctcaaagattagcaaaagcaacaacattt 308

                                                                       
Query: 309 aaaacaatttcatttggagaatcagatgaattcgatcaatatgaaccagaatttttaaaa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaaacaatttcatttggagaatcagatgaattcgatcaatatgaaccagaatttttaaaa 368

                                                                       
Query: 369 tttcatgaatttttaaaaataacatttccacaaagttcataaatatttaaaattaaatat 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttcatgaatttttaaaaataacatttccacaaagttcataaatatttaaaattaaatat 428

                                                                       
Query: 429 tattgcaaattatagtttagtttataattggaaaggnttagatgaaagtttaaaaccaat 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tattgcaaattatagtttagtttataattggaaaggnttagatgaaagtttaaaaccaat 488

                
Query: 489 cctat 493
           |||||
Sbjct: 489 cctat 493


 Score =  254 bits (128), Expect = 8e-68
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaacattgttttaaaaacccttcctccccctatattcatatagaaaaaatggataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaacattgttttaaaaacccttcctccccctatattcatatagaaaaaatggataaaa 60

                                                                       
Query: 61  gaaaacaatcagattatgataatggtaaatcaaaaccaacaaatggatcaaaaacaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaacaatcagattatgataatggtaaatcaaaaccaacaaatggatcaaaaacaacca 120

                   
Query: 121 aatttaat 128
           ||||||||
Sbjct: 121 aatttaat 128


>Contig-U09628-1 (Contig-U09628-1Q) /CSM_Contig/Contig-U09628-1Q.Seq.d
          Length = 1126

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 304 catttaaaacaatttcatttg 324
           |||||||||||||||||||||
Sbjct: 101 catttaaaacaatttcatttg 121


 Score = 30.2 bits (15), Expect = 2.1
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                      
Query: 357 gaatttttaaaatttcatgaattttta 383
           |||||||||||||| ||| | ||||||
Sbjct: 151 gaatttttaaaattccataatttttta 177


 Score = 28.2 bits (14), Expect = 8.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 373 atgaatttttaaaa 386
           ||||||||||||||
Sbjct: 149 atgaatttttaaaa 162


>Contig-U13296-1 (Contig-U13296-1Q) /CSM_Contig/Contig-U13296-1Q.Seq.d
          Length = 604

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 298 caacaacatttaaaacaatttca 320
           |||||||||||||| ||||||||
Sbjct: 467 caacaacatttaaatcaatttca 489


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,433
Number of Sequences: 6905
Number of extensions: 12433
Number of successful extensions: 1636
Number of sequences better than 10.0: 514
length of query: 493
length of database: 5,674,871
effective HSP length: 16
effective length of query: 477
effective length of database: 5,564,391
effective search space: 2654214507
effective search space used: 2654214507
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6. 4
Homology vs DNA 
Query= Contig-U03648-1 (Contig-U03648-1Q) /CSM_Contig/Contig-U03648-1Q.Seq.d
         (493 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ389463) Dictyostelium discoideum cDNA clone:dds18i19, 5' ...   527   0.0    2
(AU266831) Dictyostelium discoideum vegetative cDNA clone:VS...   391   e-179  3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1e-05  13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   0.001  10
(BJ413345) Dictyostelium discoideum cDNA clone:ddv15m02, 5' ...    42   0.005  2
(AC152633) Bos taurus clone CH240-15N3, WORKING DRAFT SEQUEN...    44   0.012  4
(DN583070) 91959224 Sea Urchin primary mesenchyme cell cDNA ...    42   0.013  2
(CU855988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.015  6
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.026  8
(AC102102) Mus musculus chromosome 16, clone RP23-79F12, com...    40   0.050  2
(AC154182) Mus musculus BAC clone RP23-471C19 from chromosom...    40   0.050  2
(AP009687) Lotus japonicus genomic DNA, chromosome 4, clone:...    40   0.052  2
(AM475869) Vitis vinifera contig VV78X210165.5, whole genome...    36   0.055  2
(EA048110) Sequence 1 from patent US 7154021.                      38   0.063  5
(AX196294) Sequence 1 from Patent WO0151627.                       38   0.063  5
(GP062383) Sequence 1 from patent US 7485770.                      38   0.063  5
(AZ663616) 1M0543P17F Mouse 10kb plasmid UUGC1M library Mus ...    40   0.064  2
(CS789204) Sequence 460 from Patent WO2005031001.                  50   0.080  1
(AC162234) Bos taurus clone CH240-110B11, WORKING DRAFT SEQU...    50   0.080  1
(AC149937) Strongylocentrotus purpuratus clone R3-12N21, WOR...    50   0.080  1
(AC149929) Strongylocentrotus purpuratus clone R3-12L22, WOR...    50   0.080  1
(AC181622) Strongylocentrotus purpuratus clone R3-1105L13, W...    50   0.080  1
(AC175921) Strongylocentrotus purpuratus clone R3-12M1, WORK...    50   0.080  1
(AC169412) Bos taurus clone CH240-199D5, WORKING DRAFT SEQUE...    50   0.080  1
(AC165553) Bos taurus clone CH240-174C17, WORKING DRAFT SEQU...    50   0.080  1
(AZ209797) SP_0151_B2_G04_T7A Strongylocentrotus purpuratus,...    50   0.080  1
(AZ146859) SP_0012_A2_G11_T7 Strongylocentrotus purpuratus, ...    50   0.080  1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   0.11   15
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.12   9
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   0.13   9
(CU861628) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.14   4
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.14   7
(EJ732618) 1092960192068 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.15   2
(AE017263) Mesoplasma florum L1 complete genome.                   36   0.16   13
(EJ761719) 1092963138597 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.17   2
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   0.17   16
(AC173787) Bos taurus clone CH240-100M19, WORKING DRAFT SEQU...    36   0.18   2
(AC172894) Bos taurus clone CH240-349K10, WORKING DRAFT SEQU...    36   0.19   2
(AC171833) Bos taurus clone CH240-370E24, WORKING DRAFT SEQU...    36   0.19   2
(AC174293) Medicago truncatula clone mth2-70h5, complete seq...    32   0.19   7
(AC190068) Cavia porcellus clone CH234-118A4, WORKING DRAFT ...    44   0.21   3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    34   0.22   9
(CT607333) Danio rerio EST, clone ZF_mu_167p11 5'.                 38   0.24   2
(AC221903) Bos taurus clone CH240-378J3, WORKING DRAFT SEQUE...    48   0.24   4
(AM470960) Vitis vinifera contig VV78X125379.4, whole genome...    36   0.26   3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.29   7
(AP010423) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   0.30   3
(AM423388) Vitis vinifera contig VV78X168424.6, whole genome...    48   0.32   1
(GC577907) Sequence 15760 from patent US 7420044.                  48   0.32   1
(GC698108) Sequence 13353 from patent US 6812339.                  48   0.32   1
(AL137178) Human DNA sequence from clone RP11-120K22 on chro...    48   0.32   1
(AC144999) Pan troglodytes clone CH251-535N14, WORKING DRAFT...    48   0.32   1
(AC144751) Pan troglodytes clone CH251-527A20, WORKING DRAFT...    48   0.32   1
(CU463057) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.32   1
(CU302285) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.32   1
(AC185770) Bos taurus clone RP42-238L16, WORKING DRAFT SEQUE...    48   0.32   1
(AC172142) Bos taurus clone CH240-307E19, WORKING DRAFT SEQU...    48   0.32   1
(EJ552277) 1092959463182 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.32   1
(EE890901) A01721A FFB Bos taurus cDNA clone A0172 3', mRNA ...    48   0.32   1
(BW353270) Ciona intestinalis cDNA, clone:ciem854b07, 5'end,...    48   0.32   1
(AM454006) Vitis vinifera contig VV78X026994.6, whole genome...    38   0.32   5
(CR382379) Zebrafish DNA sequence from clone DKEY-175N5 in l...    34   0.32   8
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.37   10
(AC144959) Xenopus (Silurana) tropicalis clone ISB-322D4, WO...    44   0.39   3
(AC153309) Gorilla gorilla gorilla clone CH255-214B7, WORKIN...    32   0.39   9
(AC164134) Bos taurus clone CH240-135B14, *** SEQUENCING IN ...    36   0.41   6
(AM440552) Vitis vinifera contig VV79X000046.13, whole genom...    32   0.42   4
(AC093596) Homo sapiens BAC clone RP11-98M12 from 4, complet...    40   0.43   6
(DQ396875) Scenedesmus obliquus strain UTEX 393 chloroplast,...    32   0.49   7
(AC068133) Homo sapiens chromosome 17 clone RP11-761L11, WOR...    40   0.49   5
(AP006135) Lotus japonicus genomic DNA, chromosome 1, clone:...    38   0.52   3
(EA048112) Sequence 3 from patent US 7154021.                      36   0.52   7
(EA048111) Sequence 2 from patent US 7154021.                      36   0.52   7
(AX196296) Sequence 3 from Patent WO0151627.                       36   0.52   7
(AX196295) Sequence 2 from Patent WO0151627.                       36   0.52   7
(GP062385) Sequence 3 from patent US 7485770.                      36   0.52   7
(GP062384) Sequence 2 from patent US 7485770.                      36   0.52   7
(FK920816) EST_lsal_evj_954107 lsalevj mixed_tissue_mixed_st...    42   0.53   2
(AC224644) Bos taurus clone CH240-479O6, WORKING DRAFT SEQUE...    46   0.54   5
(BX164146) Danio rerio genomic clone DKEY-126L21, genomic su...    36   0.54   2
(FJ006932) Brachyspira hyodysenteriae strain WA1 VSH1 region...    32   0.55   5
(AC007237) Homo sapiens PAC clone RP5-911M23 from 7, complet...    46   0.55   3
(AM425756) Vitis vinifera contig VV78X078048.4, whole genome...    38   0.56   2
(AY971355) Brachyspira hyodysenteriae Trep (trep), putative ...    32   0.57   5
(EJ785878) 1093017315009 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.58   2
(AC215629) Populus trichocarpa clone POP044-D07, complete se...    32   0.59   7
(EJ873185) 1093018355975 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.62   2
(FP085511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.64   5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.64   8
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    32   0.68   13
(AC121586) Mus musculus BAC clone RP23-273A13 from 2, comple...    36   0.68   4
(AY189719) Gossypium hirsutum ADP-ribosylation factor (ARF) ...    44   0.69   2
(AC152866) Dasypus novemcinctus clone VMRC5-466D2, WORKING D...    34   0.69   2
(AP007559) Lotus japonicus genomic DNA, chromosome 4, clone:...    40   0.69   4
(Z94157) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    38   0.70   4
(AF068710) Caenorhabditis elegans cosmid T06A1, complete seq...    42   0.72   4
(AC162175) Mus musculus chromosome 7, clone RP23-327E18, com...    36   0.73   7
(CU468303) Zebrafish DNA sequence from clone DKEYP-110H1 in ...    36   0.74   2
(Z97189) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE...    40   0.75   2
(BX000353) Zebrafish DNA sequence from clone DKEY-147H15.          32   0.78   8
(AM481980) Vitis vinifera contig VV78X196266.4, whole genome...    34   0.79   2
(CT559621) A BAC library has been constructed from cultivar ...    32   0.83   3
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    38   0.83   12
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.86   8
(EC818988) SME00003770 esmbsro2 Sawyeria marylandensis cDNA,...    42   0.87   2
(AC006845) Caenorhabditis elegans clone Y119C1X, *** SEQUENC...    32   0.91   9
(CB930160) ri71f04.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    36   0.91   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   0.95   9
(AP001677) Homo sapiens genomic DNA, chromosome 21q, section...    38   1.0    6
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   1.1    8
(Z34802) Caenorhabditis elegans Cosmid M88.                        46   1.2    2
(AL805907) Mouse DNA sequence from clone RP23-262M20 on chro...    36   1.2    5
(AP007611) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   1.2    3
(AP004926) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   1.2    5
(BX470245) Zebrafish DNA sequence from clone DKEY-249O24 in ...    46   1.3    1
(AC123061) Mus musculus BAC clone RP23-216H22 from 14, compl...    46   1.3    1
(AF431735) Leymus racemosus high-molecular-weight glutenin s...    46   1.3    1
(AC148238) Medicago truncatula clone mth2-4a11, complete seq...    46   1.3    1
(AC140023) Medicago truncatula clone mth2-32h4, complete seq...    46   1.3    1
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c...    46   1.3    1
(AC141732) Apis mellifera clone CH224-58F19, WORKING DRAFT S...    46   1.3    1
(AC103202) Rattus norvegicus clone CH230-35E14, *** SEQUENCI...    46   1.3    1
(CU856196) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(CU655879) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(AP009942) Lotus japonicus genomic DNA, clone: LjB18I11, BM0...    46   1.3    1
(AC221324) Bos taurus clone CH240-403J7, WORKING DRAFT SEQUE...    46   1.3    1
(AC188890) Cavia porcellus clone CH234-297J17, WORKING DRAFT...    46   1.3    1
(AC172495) Bos taurus clone CH240-89O3, WORKING DRAFT SEQUEN...    46   1.3    1
(AC170143) Bos taurus clone CH240-213H3, WORKING DRAFT SEQUE...    46   1.3    1
(AC167586) Bos taurus clone CH240-196G22, WORKING DRAFT SEQU...    46   1.3    1
(AQ663038) HS_5468_B1_C09_SP6E RPCI-11 Human Male BAC Librar...    46   1.3    1
(FI502336) AHT1B5RGH004-J15TP AHT1BS-Rearray Arachis hypogae...    46   1.3    1
(FI250412) CccaBb008-B4JF CccABb Cajanus cajan genomic clone...    46   1.3    1
(FI229553) CccaBa045-F2TV CccABa Cajanus cajan genomic clone...    46   1.3    1
(FI217665) CccaBa051-E6TR CccABa Cajanus cajan genomic clone...    46   1.3    1
(FI200028) CccaBa023-L7TV CccABa Cajanus cajan genomic clone...    46   1.3    1
(FH534344) CHO_OF4737xb24r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.3    1
(EJ066847) 1095458046143 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.3    1
(ED424734) AUAC-aaz80e10.g1 Ascaris suum whole genome shotgu...    46   1.3    1
(DU302308) 1098448281734 CHORI-243 Ovis aries genomic clone ...    46   1.3    1
(AG919408) Drosophila auraria DNA, clone: DAB1-029A11.F.fa, ...    46   1.3    1
(CL370892) RPCI44_300N17.f RPCI-44 Sus scrofa genomic clone ...    46   1.3    1
(CE228784) tigr-gss-dog-17000333269370 Dog Library Canis lup...    46   1.3    1
(BH822751) BACPP18-E23.z Pristionchus pacificus BAC ends Pri...    46   1.3    1
(DC226717) Plasmodium berghei strain ANKA cDNA clone:SG00674...    46   1.3    1
(DB739485) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.3    1
(DB737736) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.3    1
(DB736100) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.3    1
(DB733410) Apis mellifera head cDNA, RIKEN full-length enric...    46   1.3    1
(BB979763) Plasmodium berghei str. ANKA cDNA clone: OK009871...    46   1.3    1
(EY451125) CBAZ4772.fwd CBAZ Tubifex tubifex Embryos and juv...    46   1.3    1
(CP000994) Borrelia recurrentis A1 plasmid pl124, complete s...    46   1.3    1
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    46   1.3    1
(AC222006) Bos taurus clone CH240-375N7, WORKING DRAFT SEQUE...    36   1.3    4
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   1.3    8
(U41274) Caenorhabditis elegans cosmid T04G9, complete seque...    42   1.3    2
(AC121958) Mus musculus BAC clone RP24-241I3 from 15, comple...    40   1.3    5
(AF396436) Tetrahymena thermophila strain SB210 mitochondrio...    42   1.3    4
(AM476339) Vitis vinifera, whole genome shotgun sequence, co...    34   1.4    3
(AX347077) Sequence 2148 from Patent WO0200928.                    42   1.5    3
(EU124737) Solanum lycopersicum chromosome 3 clone C03HBa005...    34   1.5    5
(AC137294) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    40   1.6    2
(AC093309) Homo sapiens chromosome 5 clone RP11-97P23, compl...    38   1.6    5
(AP005791) Homo sapiens genomic DNA, chromosome 8q22, clone:...    36   1.6    6
(CU606925) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.6    5
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     34   1.7    18
(EK213174) 1095460105823 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.7    3
(AC006705) Caenorhabditis elegans clone Y108G3c, *** SEQUENC...    36   1.7    9
(EJ389357) 1092963893626 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.7    2
(DU196892) 1098553479614 CHORI-243 Ovis aries genomic clone ...    32   1.8    3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   1.8    13
(EJ958515) 1093018985724 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.9    3
(CX070567) UCRCS08_17F02_g Parent Washington Navel Orange Ca...    36   1.9    2
(BX255955) Zebrafish DNA sequence from clone CH211-249G22 in...    40   1.9    4
(FK735906) av02060o05r1.1 Symbiotic sea anemone (Anemonia vi...    42   2.0    2
(AC119729) Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cance...    36   2.0    5
(AM486924) Vitis vinifera contig VV78X000047.5, whole genome...    42   2.0    2
(EJ143446) 1092343672000 Global-Ocean-Sampling_GS-27-01-01-1...    38   2.0    2
(CT508936) A BAC library has been constructed from cultivar ...    36   2.0    2
(EK330521) 1095467022448 Global-Ocean-Sampling_GS-31-01-01-1...    38   2.1    2
(AM468258) Vitis vinifera contig VV78X169959.8, whole genome...    38   2.1    2
(CU929953) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   2.2    6
(AC048332) Homo sapiens chromosome 3 clone RP11-526M23, WORK...    38   2.2    5
(CU744989) A BAC library has been constructed from PN40024 g...    32   2.2    3
(AC183498) Brassica oleracea, *** SEQUENCING IN PROGRESS ***.      32   2.4    8
(AC096133) Rattus norvegicus clone CH230-11C19, *** SEQUENCI...    34   2.4    2
(CV845976) ID0AEE13DC02RM1 ID0AEE Acyrthosiphon pisum cDNA c...    34   2.4    2
(CU468199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    2
(AC180028) Strongylocentrotus purpuratus clone R3-3030P24, W...    32   2.4    2
(AC093142) Homo sapiens chromosome 3 clone RP11-301D8, compl...    34   2.4    2
(AC166043) Bos taurus clone CH240-165J11, WORKING DRAFT SEQU...    32   2.5    2
(AP003477) Homo sapiens genomic DNA, chromosome 8q23, clone:...    36   2.5    6
(CU468379) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.5    2
(AC177175) Strongylocentrotus purpuratus clone R3-4018A3, WO...    32   2.5    2
(AC218622) Bos taurus clone CH240-299K4, WORKING DRAFT SEQUE...    32   2.5    2
(AC195928) Zea mays chromosome 6 clone CH201-276J19; ZMMBBc0...    32   2.5    2
(CR848753) Zebrafish DNA sequence from clone DKEY-46J3 in li...    34   2.5    2
(EF587370) Oedogonium cardiacum strain SAG 575-1b ribosomal ...    34   2.5    3
(FG291284) 1108793336388 New World Screwworm Egg 9261 ESTs C...    42   2.5    2
(AC179886) Strongylocentrotus purpuratus clone R3-1006K15, W...    32   2.5    2
(AC008046) Arabidopsis thaliana chromosome I BAC F5A13 genom...    32   2.5    5
(AR777036) Sequence 191 from patent US 6972197.                    32   2.5    5
(AC128053) Rattus norvegicus clone CH230-454D15, *** SEQUENC...    34   2.5    2
(AC152136) Dasypus novemcinctus clone VMRC5-255M20, WORKING ...    32   2.5    2
(AC196633) Dasypus novemcinctus clone VMRC5-90I16, WORKING D...    32   2.5    2
(AC176888) Strongylocentrotus purpuratus clone R3-31J19, WOR...    32   2.5    2
(DX572738) Phaseolus-Bat-7_01_J16.T3 Phaseolus-Bat-7 Phaseol...    42   2.5    2
(AP001297) Arabidopsis thaliana genomic DNA, chromosome 3, B...    32   2.5    2
(BX957279) Zebrafish DNA sequence from clone DKEY-218N20 in ...    34   2.6    5
(AC012035) Homo sapiens chromosome 3 clone RP11-97H17, WORKI...    36   2.7    4
(CR926463) Zebrafish DNA sequence from clone DKEY-175G6 in l...    38   2.7    4
(AC006794) Caenorhabditis elegans cosmid Y50D4A, complete se...    34   2.7    2
(AM424418) Vitis vinifera contig VV78X190210.11, whole genom...    34   2.7    2
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    34   2.8    4
(AC009198) Drosophila melanogaster, chromosome 2L, region 33...    40   2.8    4
(AC146606) Mus musculus BAC clone RP23-277P7 from chromosome...    40   2.8    4
(AM461839) Vitis vinifera, whole genome shotgun sequence, co...    34   2.8    2
(CT568718) Rainbow trout liver SSH library from warm, cold a...    42   3.0    2
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         30   3.0    15
(AM471597) Vitis vinifera contig VV78X134402.3, whole genome...    38   3.0    3
(AC120825) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 54 ...    34   3.0    4
(AM445669) Vitis vinifera contig VV78X208581.3, whole genome...    34   3.1    2
(CP000382) Clostridium novyi NT, complete genome.                  34   3.1    15
(CU457632) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.1    4
(AM448885) Vitis vinifera contig VV78X273578.4, whole genome...    36   3.1    2
(CL078665) CH216-152G8_RM4.1 CH216 Xenopus (Silurana) tropic...    34   3.2    2
(ET003314) ZMMBHp0008C21.r ZMMBHp Zea mays genomic clone ZMM...    32   3.2    2
(CG459020) PUIKK57TDB ZM_0.6_1.0_KB Zea mays genomic clone Z...    32   3.3    2
(EK354892) 1095468473167 Global-Ocean-Sampling_GS-31-01-01-1...    32   3.3    2
(DX405474) GR_Sa0001J13.b1 Gossypium raimondii WGS library G...    32   3.3    2
(FI502854) AHT1B5RGH005-O15TV AHT1BS-Rearray Arachis hypogae...    32   3.3    2
(DT227723) JGI_CAAT3363.rev CAAT Pimephales promelas brain 7...    32   3.3    2
(FH462046) CHO_OF4939xf03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   3.3    2
(DU931115) 353528 Tomato EcoRI BAC Library Solanum lycopersi...    32   3.3    2
(ER842798) POTMJ86TR Solanum tuberosum RHPOTKEY BAC ends Sol...    32   3.3    2
(BX323544) Zebrafish DNA sequence from clone DKEY-175I15 in ...    36   3.3    3
(DH755335) Rattus norvegicus DNA, BAC clone: RNB1-334N16, 3'...    34   3.3    2
(AC213090) Populus trichocarpa clone POP118-O19, complete se...    32   3.3    7
(DH744030) Rattus norvegicus DNA, BAC clone: RNB1-319F22, 5'...    34   3.3    2
(DH560109) Rattus norvegicus DNA, BAC clone: RNB1-071M23, 5'...    34   3.3    2
(AC181042) Strongylocentrotus purpuratus clone R3-3050G09, W...    34   3.3    4
(BZ307826) hx63c02.b2 WGS-ZmaysF (JM107 adapted methyl filte...    32   3.3    2
(AM640304) Entamoeba dispar GSS, clone dispar73a11.q1k.            34   3.3    2
(CU463073) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.3    3
(CK533286) rswgb0_001241.y1 swg Bombyx mori cDNA, mRNA seque...    34   3.4    2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    32   3.4    8
(AC183244) Bos taurus clone CH240-97N21, WORKING DRAFT SEQUE...    34   3.4    5
(AC027123) Homo sapiens chromosome 3 clone RP11-392M7 map 3p...    38   3.6    3
(CR627496) Zebrafish DNA sequence from clone DKEY-223G10 in ...    36   3.7    5
(CU457788) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.7    3
(AM437593) Vitis vinifera contig VV78X222207.2, whole genome...    38   3.7    2
(CP001372) Borrelia burgdorferi 72a plasmid 72a_cp32-12, com...    34   3.8    4
(AC006717) Caenorhabditis elegans cosmid Y14H12A, complete s...    32   3.8    4
(AC111064) Mus musculus chromosome 1, clone RP23-245H20, com...    32   3.8    6
(AC168601) Strongylocentrotus purpuratus clone R3-3046N12, W...    40   3.8    4
(AC179128) Strongylocentrotus purpuratus clone R3-1107L16, W...    34   3.9    4
(CU468371) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.9    4
(DX511634) 643_6_14174199_16654_43642_078 Arachis duranensis...    30   4.0    3
(CR925704) Zebrafish DNA sequence from clone CH211-156P21 in...    36   4.1    3
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,...    36   4.2    4
(EI341152) GM_WBc0085A19.f GM_WBc Glycine max genomic clone ...    30   4.3    3
(AC113195) Homo sapiens chromosome 18, clone RP11-1112K22, c...    38   4.4    5
(CU210945) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.4    6
(AP004529) Lotus japonicus genomic DNA, chromosome 2, clone:...    40   4.4    4
(AC206724) Macaca mulatta chromosome UNKNOWN clone CH250-78L...    42   4.5    5
(AC095590) Rattus norvegicus clone CH230-8I18, *** SEQUENCIN...    34   4.5    5
(AC094990) Rattus norvegicus clone CH230-6E21, WORKING DRAFT...    34   4.6    5
(EI504705) PV_GBa0125P24.r PV_GBa Phaseolus vulgaris genomic...    40   4.7    2
(CQ926680) Sequence 1713 from Patent WO2004083403.                 40   4.8    3
(AP000475) Homo sapiens genomic DNA, chromosome 21 clone:RP1...    34   4.9    6
(CP000238) Baumannia cicadellinicola str. Hc (Homalodisca co...    44   4.9    6
(CU280645) Zebrafish DNA sequence from clone DKEY-172H23.          44   4.9    1
(CR762392) Zebrafish DNA sequence from clone DKEY-265A11 in ...    44   4.9    1
(BX005095) Zebrafish DNA sequence from clone CH211-189B21.         44   4.9    1
(AC115393) Rattus norvegicus  BAC CH230-103E13 (Children's H...    44   4.9    1
(AC113471) Mus musculus chromosome 7, clone RP23-268E17, com...    44   4.9    1
(AC195289) Pan troglodytes BAC clone CH251-716G17 from chrom...    44   4.9    1
(AC169978) Pan troglodytes chromosome X clone PTB-93C10 map ...    44   4.9    1
(AY197496) Gossypium hirsutum ADP-ribosylation factor 1 (ARF...    44   4.9    1
(AY197495) Gossypium hirsutum ADP-ribosylation factor gene, ...    44   4.9    1
(AP009655) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   4.9    1
(AP006630) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   4.9    1
(AP006116) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   4.9    1
(AP004901) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   4.9    1
(AM450568) Vitis vinifera contig VV79X002565.1, whole genome...    44   4.9    1
(AM450173) Vitis vinifera, whole genome shotgun sequence, co...    44   4.9    1
(AM432741) Vitis vinifera contig VV78X010130.1, whole genome...    44   4.9    1
(AM429961) Vitis vinifera contig VV78X264329.4, whole genome...    44   4.9    1
(AC189587) Brassica rapa subsp. pekinensis clone KBrH012K23,...    44   4.9    1
(AC189544) Brassica rapa subsp. pekinensis clone KBrH004I05,...    44   4.9    1
(FB596647) Sequence 12370 from Patent WO2004081186.                44   4.9    1
(DJ421822) Single nucleotide polymorphism in a human gene en...    44   4.9    1
(DJ127133) Type2 diabetes susceptibility genes, and use ther...    44   4.9    1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    44   4.9    1
(AB242844) Drosophila mauritiana mitochondrial DNA, A+T-rich...    44   4.9    1
(AP005623) Homo sapiens genomic DNA, chromosome 8q23, clone:...    44   4.9    1
(AL832190) Homo sapiens mRNA; cDNA DKFZp686A202 (from clone ...    44   4.9    1
(AL158214) Human DNA sequence from clone RP11-543E8 on chrom...    44   4.9    1
(AL158144) Human DNA sequence from clone RP3-421H16 on chrom...    44   4.9    1
(AC110612) Homo sapiens BAC clone RP11-416B16 from 4, comple...    44   4.9    1
(AC099562) Homo sapiens chromosome 1 clone RP11-213P13, comp...    44   4.9    1
(AC091843) Homo sapiens chromosome 5 clone CTD-2185O23, comp...    44   4.9    1
(AC091576) Homo sapiens chromosome 18, clone RP11-711I10, co...    44   4.9    1
(AC068718) Homo sapiens BAC clone RP11-123G24 from 2, comple...    44   4.9    1
(AC064802) Homo sapiens chromosome 8, clone RP11-267L5, comp...    44   4.9    1
(AC136836) Rattus norvegicus clone CH230-122F7, WORKING DRAF...    44   4.9    1
(AC136822) Rattus norvegicus clone CH230-148K4, WORKING DRAF...    44   4.9    1
(AC135040) Rattus norvegicus clone CH230-60F9, *** SEQUENCIN...    44   4.9    1
(AC130735) Rattus norvegicus clone CH230-6O8, WORKING DRAFT ...    44   4.9    1
(AC118875) Rattus norvegicus clone CH230-496L9, *** SEQUENCI...    44   4.9    1
(AC113319) Mus musculus chromosome 7 clone RP23-445H13 map 7...    44   4.9    1
(AC106265) Rattus norvegicus clone CH230-234D22, *** SEQUENC...    44   4.9    1
(CU896665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.9    1
(CU570829) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CU468534) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CU468333) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CU466354) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CU424487) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CT009751) Trypanosoma brucei chromosome 9, unassembled cont...    44   4.9    1
(AP010621) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   4.9    1
(AP010213) Lotus japonicus genomic DNA, clone: LjT36K06, TM1...    44   4.9    1
(AP010060) Lotus japonicus genomic DNA, clone: LjT02K08, TM0...    44   4.9    1
(AP007917) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   4.9    1
(AP007746) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   4.9    1
(AP001645) Homo sapiens genomic DNA, chromosome 18q21 clone:...    44   4.9    1
(AM050675) Triticum aestivum BAC 12F16.                            44   4.9    1
(AM050673) Triticum aestivum BAC 1236H11.                          44   4.9    1
(AC196610) Otolemur garnettii clone CH256-311M14, WORKING DR...    44   4.9    1
(AC196334) Otolemur garnettii clone CH256-145J8, WORKING DRA...    44   4.9    1
(AC194438) Zea mays chromosome 8 clone CH201-152K17; ZMMBBc0...    44   4.9    1
(AC189894) Cavia porcellus clone CH234-272E6, WORKING DRAFT ...    44   4.9    1
(AC184887) Bos taurus clone CH240-397N9, WORKING DRAFT SEQUE...    44   4.9    1
(AC182242) Bos taurus clone CH240-509N1, WORKING DRAFT SEQUE...    44   4.9    1
(AC173064) Bos taurus clone CH240-229M19, WORKING DRAFT SEQU...    44   4.9    1
(AC171239) Bos taurus clone CH240-255E12, WORKING DRAFT SEQU...    44   4.9    1
(AC170848) Bos taurus clone CH240-227J5, WORKING DRAFT SEQUE...    44   4.9    1
(AC168286) Bos taurus clone CH240-212L2, WORKING DRAFT SEQUE...    44   4.9    1
(AC167763) Bos taurus clone CH240-195I10, WORKING DRAFT SEQU...    44   4.9    1
(AC164785) Bos taurus clone CH240-154P1, *** SEQUENCING IN P...    44   4.9    1
(AC164376) Bos taurus clone CH240-148O7, *** SEQUENCING IN P...    44   4.9    1
(AC021536) Homo sapiens chromosome 4 clone RP11-420H20 map 4...    44   4.9    1
(FI231205) CccaBa046-I13TV CccABa Cajanus cajan genomic clon...    44   4.9    1
(FI215607) CccaBa047-I6TR CccABa Cajanus cajan genomic clone...    44   4.9    1
(FH921525) CHO_NF2008xf24f1.ab1 CHO_NF2 Nicotiana tabacum ge...    44   4.9    1
(FH661385) CHO_OF5002xk03r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   4.9    1
(FH661303) CHO_OF5002xk03f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   4.9    1
(FH538754) CHO_OF4770xh02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.9    1
(FH205336) CHO_OF3139xn19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(FH026509) CHO_OF3014xi22r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.9    1
(ET687026) CHO_OF356xa20r1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET686960) CHO_OF356xa20f1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ET686890) CHO_OF356xa21r1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.9    1
(ER803382) PPTBZ69TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   4.9    1
(EK544061) 1095516075006 Global-Ocean-Sampling_GS-32-01-01-1...    44   4.9    1
(EJ964175) 1093022028433 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.9    1
(EJ954647) 1093018965782 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.9    1
(EJ858453) 1093017959152 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.9    1
(AQ111143) CIT-HSP-2371G2.TR CIT-HSP Homo sapiens genomic cl...    44   4.9    1
(EJ417628) 1093012196562 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.9    1
(EJ335591) 1092963475028 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.9    1
(EJ167417) 1092344071007 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.9    1
(DX911461) KBrH048I21F KBrH, Brassica rapa HindIII BAC libra...    44   4.9    1
(DX520054) GH_MBb0078D18r GH_MBb Gossypium hirsutum genomic ...    44   4.9    1
(DX444461) BE2007_A20_F IASMA L2 HindIII BAC library Vitis v...    44   4.9    1
(DX434449) BE1089_E19_R IASMA L1 HindIII BAC library Vitis v...    44   4.9    1
(DE869790) Macropus eugenii DNA, BAC clone: MEB1-039E22_F, 5...    44   4.9    1
(DE429281) Bombyx mori genomic DNA, Fosmid clone:GBMFno13_h1...    44   4.9    1
(DE332172) Bombyx mori genomic DNA, BAC clone:BET_008_G11.         44   4.9    1
(CZ434341) OA_BBa0133L16.r OA_BBa Oryza alta genomic clone O...    44   4.9    1
(CZ433057) OA_BBa0129I06.f OA_BBa Oryza alta genomic clone O...    44   4.9    1
(CZ422797) 1018500 RP42 Bos taurus genomic clone RP42-50F04,...    44   4.9    1
(CZ253908) LQCYC22TR American Alligator BAC Library Alligato...    44   4.9    1
(CZ251618) LQCYD21TR American Alligator BAC Library Alligato...    44   4.9    1
(CW586223) OA_ABa0118J13.f OA_ABa Oryza australiensis genomi...    44   4.9    1
(CU945895) Brassica napus GSS, clone JBnB017B17, end read, p...    44   4.9    1
(CU740476) A BAC library has been constructed from PN40024 g...    44   4.9    1
(CU094688) Equus caballus GSS, BAC clone CH241-194G17, T7 en...    44   4.9    1
(CR912778) Sus scrofa BES.                                         44   4.9    1
(CL924302) OA_ABa0030B07.f OA_ABa Oryza australiensis genomi...    44   4.9    1
(CL915938) OA_ABa0018F12.f OA_ABa Oryza australiensis genomi...    44   4.9    1
(CL094213) ISB1-24K5_T7.1 ISB1 Xenopus (Silurana) tropicalis...    44   4.9    1
(CL019133) CH216-4L5_RM1.1 CH216 Xenopus (Silurana) tropical...    44   4.9    1
(CC809091) ZMMBBc0489C01r ZMMBBc Zea mays subsp. mays genomi...    44   4.9    1
(CC454060) BARC-Satt715 Size-selected soybean genomic Glycin...    44   4.9    1
(DY226909) ID0AAI9YK20RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    44   4.9    1
(DV163442) ZM_BFb0159H05.f ZM_BFb Zea mays cDNA 3', mRNA seq...    44   4.9    1
(DB004787) Homo sapiens cDNA clone TBAES2007635, 5' end, mRN...    44   4.9    1
(DA232278) Homo sapiens cDNA clone BRAWH3027782, 5' end, mRN...    44   4.9    1
(CB081674) hk55a08.g1 Gnetum leaves (NYBG) Gnetum gnemon cDN...    44   4.9    1
(FK860311) 000004981573B21 D. serrata mRNA from different de...    44   4.9    1
(FK859603) 000004981173O04 D. serrata mRNA from different de...    44   4.9    1
(FG540440) OtL017B09_011807d Onthophagus taurus larval libra...    44   4.9    1
(FC191624) CAAD10512.rev CAAD Nematostella vectensis nemve_P...    44   4.9    1
(ES654536) Hops-Column40_2007-04-26/Hops-Column40_C08_030_1 ...    44   4.9    1
(EB543321) AGENCOURT_52938159 D. erecta EST Drosophila erect...    30   4.9    3
(AM461110) Vitis vinifera contig VV78X173029.6, whole genome...    42   5.0    2
(CT961060) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   5.0    3
(AC198849) Spermophilus tridecemlineatus clone VMRC20-474A15...    36   5.4    4
(EU795085) Uncultured bacterium ARCTIC23_B_12 genomic sequence.    42   5.4    2
(CR384074) Zebrafish DNA sequence from clone DKEY-229H19 in ...    34   5.4    4
(EU795242) Uncultured bacterium ARCTIC29_C_07 genomic sequence.    42   5.5    2
(AC166736) Bos taurus clone CH240-175D10, WORKING DRAFT SEQU...    36   5.5    4
(AC211307) Populus trichocarpa clone POP006-B16, complete se...    32   5.5    6
(AM445537) Vitis vinifera contig VV78X085211.16, whole genom...    42   5.5    2
(AL034559) Plasmodium falciparum MAL3P7.                           38   5.6    5
(AC190836) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    38   5.7    5
(AC225527) Medicago truncatula clone mth2-139k5, WORKING DRA...    38   5.7    5
(EK040230) 1092959513119 Global-Ocean-Sampling_GS-31-01-01-1...    32   5.7    3
(AM458196) Vitis vinifera contig VV78X159362.42, whole genom...    34   5.7    4
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    34   5.7    15
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   5.7    6
(AM429974) Vitis vinifera contig VV78X017841.13, whole genom...    32   5.8    4
(AC179084) Strongylocentrotus purpuratus clone R3-4009J08, W...    32   5.8    7
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          32   5.8    15
(AM447559) Vitis vinifera contig VV78X046893.4, whole genome...    38   5.8    3
(BU887325) R057BH08 Populus root cDNA library Populus tremul...    40   6.0    2
(DN488404) R057H08.3pR Populus root cDNA library Populus tre...    40   6.1    2
(CU856293) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.1    5
(EB540308) AGENCOURT_52939878 D. erecta EST Drosophila erect...    30   6.1    3
(EB537805) AGENCOURT_52944182 D. erecta EST Drosophila erect...    30   6.1    3
(AC104640) Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cance...    42   6.1    5
(CK112382) R057H08 Populus root cDNA library Populus tremula...    40   6.1    2
(AC162342) Bos taurus clone CH240-115C14, WORKING DRAFT SEQU...    36   6.2    6
(DN498089) R057H08.5pR Populus root cDNA library Populus tre...    40   6.2    2
(AE017308) Mycoplasma mobile 163K complete genome.                 36   6.2    13
(DD010735) Diagnosis of known genetic Parameters within the ...    36   6.4    9
(AM739152) Cucumis melo subsp. melo EST, clone 15d_31-E10-M13R.    40   6.4    2
(AC118513) Rattus norvegicus clone CH230-297J5, *** SEQUENCI...    36   6.5    5
(CU311187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.6    6
(BX640460) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.7    8
(AX345613) Sequence 684 from Patent WO0200928.                     36   6.7    3
(AX345246) Sequence 317 from Patent WO0200928.                     36   6.8    3
(BV641875) S215P61230RH5.T0 Clara Pan troglodytes troglodyte...    40   6.9    2
(AC093325) Homo sapiens BAC clone RP11-612J15 from 4, comple...    34   6.9    5
(AC152593) Bos taurus clone CH240-5M1, WORKING DRAFT SEQUENC...    32   6.9    6
(AC103127) Rattus norvegicus clone CH230-216M20, WORKING DRA...    32   6.9    7
(AC117082) Dictyostelium discoideum chromosome 2 map complem...    32   7.0    5
(CU074320) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.1    5
(AC023684) Drosophila melanogaster X BAC RP98-7P13 (Roswell ...    38   7.2    6
(AX345334) Sequence 405 from Patent WO0200928.                     30   7.3    4
(AC212925) Populus trichocarpa clone POP008-I05, complete se...    40   7.3    4
(AM451330) Vitis vinifera contig VV78X266902.5, whole genome...    34   7.4    2
(AC187116) Gallus gallus BAC clone CH261-65J18 from chromoso...    32   7.5    5
(FH621194) CHO_OF4945xp14f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   7.6    2
(AC193821) Chlorocebus aethiops clone CH252-345L20, WORKING ...    32   7.6    7
(U41036) Caenorhabditis elegans cosmid T14E8, complete seque...    34   7.7    4
(AC021631) Mus musculus, clone RP23-38J11, complete sequence.      42   7.8    4
(DU700285) Bst032812 lambda03 Boechera stricta genomic clone...    32   7.8    3
(AC096861) Homo sapiens 3 BAC RP11-592P9 (Roswell Park Cance...    34   7.8    4
(AX346223) Sequence 1294 from Patent WO0200928.                    34   7.9    3
(AL445232) Human DNA sequence from clone RP11-71J12 on chrom...    40   7.9    3
(FH536108) CHO_OF4772xo03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   7.9    2
(BX004836) Zebrafish DNA sequence from clone CH211-176O3 in ...    34   7.9    4
(ER465477) 1092963920304 Global-Ocean-Sampling_GS-35-01-01-1...    40   8.0    2
(AZ688168) ENTMM80TR Entamoeba histolytica Sheared DNA Entam...    38   8.1    2
(AZ669321) ENTGA15TR Entamoeba histolytica Sheared DNA Entam...    38   8.1    2
(AC009369) Drosophila melanogaster clone RPCI98-8G12, *** SE...    38   8.1    3
(AZ530131) ENTBH60TF Entamoeba histolytica Sheared DNA Entam...    38   8.1    2
(CT177872) Sus scrofa genomic clone CH242-39H14, genomic sur...    34   8.1    2
(EJ659482) 1092955018829 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.2    2
(AZ545764) ENTFM29TF Entamoeba histolytica Sheared DNA Entam...    38   8.2    2
(AP009980) Lotus japonicus genomic DNA, clone: LjT03K24, TM0...    40   8.2    4
(EJ873407) 1093018357098 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.2    2
(AM462106) Vitis vinifera, whole genome shotgun sequence, co...    34   8.2    3
(EJ264580) 1095351000123 Global-Ocean-Sampling_GS-27-01-01-1...    40   8.2    2
(AM451888) Vitis vinifera contig VV78X130197.5, whole genome...    30   8.2    4
(ED732647) GM_WBb0090G08.r GM_WBb Glycine max genomic clone ...    38   8.3    2
(AL031780) Human DNA sequence from clone RP3-470K1 on chromo...    34   8.3    6
(EK448766) 1095467062212 Global-Ocean-Sampling_GS-32-01-01-1...    36   8.3    2
(CR936325) Medicago truncatula chromosome 5 clone mth2-53m2,...    36   8.4    5
(AC147588) Oryctolagus cuniculus clone LB1-67N15, WORKING DR...    38   8.4    3
(BK006346) TPA_exp: Apis mellifera sex determination locus, ...    32   8.5    5
(EJ631031) 1092963493242 Global-Ocean-Sampling_GS-29-01-01-1...    34   8.5    3
(AE014174) Mus musculus piebald deletion region section 2 of...    32   8.5    2
(AC130805) Medicago truncatula clone mth2-9n1, complete sequ...    36   8.5    6
(AC150643) Bos taurus clone CH240-175B22, WORKING DRAFT SEQU...    32   8.5    2
(EJ668486) 1092955049933 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.5    2
(EK240232) 1095460219442 Global-Ocean-Sampling_GS-31-01-01-1...    36   8.6    2
(AC130563) Rattus norvegicus clone CH230-88B15, *** SEQUENCI...    38   8.6    7
(AL590554) Human DNA sequence from clone RP11-99O6 on chromo...    34   8.6    5
(AC147662) Pan troglodytes chromosome UNK clone CH251-272J24...    38   8.7    4
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    36   8.7    5
(CR678070) Zebrafish DNA sequence from clone DKEY-261H17 in ...    30   8.7    2
(CR354421) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    32   8.8    2
(AC210405) Saimiri boliviensis boliviensis clone CH254-48M2,...    32   8.8    2
(GN007791) Sequence 232 from Patent EP2014669.                     32   8.8    2
(CU694853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.8    2
(GC700820) Sequence 16065 from patent US 6812339.                  32   8.8    2
(AC184829) Canis Familiaris chromosome 32, clone XX-3D7, com...    30   8.8    2
(AC168354) Strongylocentrotus purpuratus clone R3-56H21, WOR...    30   8.9    2
(AC173048) Bos taurus clone CH240-125H19, WORKING DRAFT SEQU...    32   8.9    2
(AC021289) Homo sapiens clone RP11-21M4, WORKING DRAFT SEQUE...    32   8.9    6
(AC157571) Mus musculus BAC clone RP23-111F7 from chromosome...    32   8.9    2
(AC123855) Mus musculus BAC clone RP23-328J17 from chromosom...    32   8.9    2
(AC161880) Mus musculus BAC clone RP23-261N13 from chromosom...    32   8.9    2
(AC158520) Mus musculus BAC clone RP23-434P22 from chromosom...    32   8.9    2
(AC122518) Mus musculus chromosome UNK clone RP24-461M14, WO...    32   8.9    2
(AC175167) Bos taurus clone CH240-233J22, WORKING DRAFT SEQU...    30   8.9    2
(AF225898) Homo sapiens BAC clone 13d21, complete sequence.        32   8.9    2
(AC150583) Bos taurus clone CH240-252O10, WORKING DRAFT SEQU...    32   8.9    2

>(BJ389463) Dictyostelium discoideum cDNA clone:dds18i19, 5' end,
           single read.
          Length = 494

 Score =  527 bits (266), Expect(2) = 0.0
 Identities = 285/292 (97%)
 Strand = Plus / Plus


Query: 202 catcaaaacaaccaaaagttgaaatattatcaccagatcatatagattcatttacaacat 261
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 catcaaaacaaccnaaagttgaaatattatcaccngatcatatagattcatttacaacat 261


Query: 262 tatctgatatagaattagctcaaagattagcaaaagcaacaacatttaaaacaatttcat 321
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 262 tatctgatatagaattagctcaaagattagcaaaagcnacaacntttaaaacaatttcat 321


Query: 322 ttggagaatcagatgaattcgatcaatatgaaccagaatttttaaaatttcatgaatttt 381
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 322 ttggagaatcagatgaattcgatcaatataaacccgaatttttaaaatttcatgaatttt 381


Query: 382 taaaaataacatttccacaaagttcataaatatttaaaattaaatattattgcaaattat 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 382 taaaaataacatttccacaaagttcataaatatttaaaattaaatattattgcnaattat 441


Query: 442 agtttagtttataattggaaaggnttagatgaaagtttaaaaccaatcctat 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtttagtttataattggaaaggnttagatgaaagtttaaaaccaatcctat 493

 Score =  236 bits (119), Expect(2) = 0.0
 Identities = 119/119 (100%)
 Strand = Plus / Plus


Query: 1   aaaaacattgttttaaaaacccttcctccccctatattcatatagaaaaaatggataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaacattgttttaaaaacccttcctccccctatattcatatagaaaaaatggataaaa 60


Query: 61  gaaaacaatcagattatgataatggtaaatcaaaaccaacaaatggatcaaaaacaacc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaacaatcagattatgataatggtaaatcaaaaccaacaaatggatcaaaaacaacc 119

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 749,831,216
Number of extensions: 55846559
Number of successful extensions: 5542435
Number of sequences better than 10.0: 543
Length of query: 493
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 470
Effective length of database: 99,442,330,388
Effective search space: 46737895282360
Effective search space used: 46737895282360
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03648-1 (Contig-U03648-1Q) /CSM_Contig/Contig-U03648-1Q.Seq.d
         (493 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FR8) RecName: Full=Probable carboxypeptidase S-like 2;      ...   192   2e-59
(Q55DL1) RecName: Full=Probable carboxypeptidase S-like 1;      ...    39   4e-06
CU638743_118(CU638743|pid:none) Podospora anserina genomic DNA c...    32   0.002
CP000606_980(CP000606|pid:none) Shewanella loihica PV-4, complet...    34   0.004
CU928170_184(CU928170|pid:none) Kluyveromyces thermotolerans str...    32   0.006
CU234118_261(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple...    31   0.013
AE016818_215(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    30   0.079
FM992691_158(FM992691|pid:none) Candida dubliniensis CD36 chromo...    34   0.13
AE005673_733(AE005673|pid:none) Caulobacter crescentus CB15, com...    30   0.17
(P0C155) RecName: Full=Putative carboxypeptidase YOL153C;       ...    32   0.28
CR382126_81(CR382126|pid:none) Kluyveromyces lactis strain NRRL ...    29   0.60
BA000031_1365(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22...    32   0.61
CP000158_609(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,...    28   0.61
AY458648_40(AY458648|pid:none) Uncultured marine bacterium 581 c...    29   0.78
CR380949_7(CR380949|pid:none) Candida glabrata strain CBS138 chr...    28   1.0
CR382125_244(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    35   1.2
CU914166_569(CU914166|pid:none) Ralstonia solanacearum strain IP...    34   2.1
CU695240_42(CU695240|pid:none) Ralstonia solanacearum strain Mol...    34   2.1
AL646053_487(AL646053|pid:none) Ralstonia solanacearum GMI1000 m...    34   2.1
CP000094_1231(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    33   2.8
CR382139_812(CR382139|pid:none) Debaryomyces hansenii strain CBS...    29   7.6
AE000792_9(AE000792|pid:none) Borrelia burgdorferi B31 plasmid c...    32   8.1
CP001550_9(CP001550|pid:none) Borrelia burgdorferi 29805 plasmid...    32   8.1
CP001522_9(CP001522|pid:none) Borrelia sp. SV1 plasmid SV1_cp26,...    32   8.1
CP001271_9(CP001271|pid:none) Borrelia burgdorferi 156a plasmid ...    32   8.1
CP001568_9(CP001568|pid:none) Borrelia burgdorferi Bol26 plasmid...    32   8.1

>(Q55FR8) RecName: Full=Probable carboxypeptidase S-like 2;
           EC=3.4.17.-;
          Length = 519

 Score =  192 bits (489), Expect(2) = 2e-59
 Identities = 101/130 (77%), Positives = 102/130 (78%)
 Frame = +3

Query: 51  MDKRKQSDYDNGKSKPTNGSKTTKFNXXXXXXXXXXXXXXXXXXXNTIRFTSKQPKVEIL 230
           MDKRKQSDYDNGKSKPTNGSKTTKFN                   NTIRFTSKQPKVEIL
Sbjct: 1   MDKRKQSDYDNGKSKPTNGSKTTKFNLIKIIIRNLLIGILLMLVLNTIRFTSKQPKVEIL 60

Query: 231 SPDHIDSFTTLSDIELAQRLAKATTFKTISFGESDEFDQYEPEFLKFHEFLKITFPQSS* 410
           SPDHIDSFTTLSDIELAQRLAKATTFKTISFGESDEFDQYEPEFLKFHEFLKITFP
Sbjct: 61  SPDHIDSFTTLSDIELAQRLAKATTFKTISFGESDEFDQYEPEFLKFHEFLKITFP---- 116

Query: 411 IFKIKYYCKL 440
             K+  Y KL
Sbjct: 117 --KVHKYLKL 124

 Score = 58.9 bits (141), Expect(2) = 2e-59
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +1

Query: 412 YLKLNIIANYSLVYNWKGLDESLKPIL 492
           YLKLNIIANYSLVYNWKGLDESLKPIL
Sbjct: 121 YLKLNIIANYSLVYNWKGLDESLKPIL 147

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 504,707,527
Number of extensions: 7631542
Number of successful extensions: 18121
Number of sequences better than 10.0: 26
Number of HSP's gapped: 18112
Number of HSP's successfully gapped: 42
Length of query: 164
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 45
Effective length of database: 672,240,369
Effective search space: 30250816605
Effective search space used: 30250816605
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.79  gvh: 0.29  alm: 0.24  top: 0.33  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.23  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U03648-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0