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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03598-1
Contig ID Contig-U03598-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Contig-U03598-1Q.Seq.d
ATAAATTCTATAATTAAAGAAACTTTAACAAAGAGTAGTAATTCAGTATT
ATTAAAATCAAGTCAAAAGAATTGTAAAGTCTCAAGTGGAACTATTAATA
ATAACATTTTTAGAAATTCAAAATTTACAACTTCCAATTTAACATTAACA
ACATCAACAACTTTAAATACAAAAAATTCAATTTTTAACTTTGAACAAAA
CAAAAAAACTTTAGGTTGTCTTTTATTTACTACAACTTTTTTATTTAATT
CAACAACAACAAATAACGATAGTATTAAAACTTTTTGTACCAATACTACA
ACTACTACAACAACAACAACAACAAATAATAATAATAATAATAGTAATAT
AAATATCATGATTGATACAATGACTATAAATGATGCTAGTGCTGCTTCAA
CCTCTTCTACAGTTGCTGAAGATTGTCTAAGTACTACTATTGATGCTACA
GCCACTATTACAGATACAACAACTAATCATAAAACATATGTAGATGAAGC
AATGCAAGATAGAGAAATGAGAGATCAAAATAATAATAGCAATGATGATA
GTACAGATGAAATTAATAATATAGATAAAAATAAAAGTAATAATATAGAT
AAAGAAGAACAAGAGCAAGAAGAAGAAGAAGAAGAAGATAATACAAATAC
AAATATAACATCAGATGATGATGAAACAAATCAAATAATAAATAATATAA
ATAATATAAATAACTATAATAGTGAAGAGTGTATAGGTGGTGAAGGTAAT
TTTCATTTAAATTCTGGAGTTTGTGTTATTCCACATCCAAATAAAAGACA
TAAAGGAGGTGAAGATGCATATTTTATTAGTATAGATCAAAATGTAATTG
GTGTTGCAGATGGTGTTGGTGGATGGGGTGATGTCGGTATTGATCCATCA
GAATATTCAAATACATTAATGAAAGGTTCAAAGATTGGCGCCGACTCACA
AAAAGTTGAACGTGATCCACTCATTATCATGGAACAAGGCTACCAATACG
CCCAAGACGTCAAGGGTAGTAGCACATGTTGTATAGTGGTTTTATCGGCC
CCCCATAAATATATTATCAGCAAATCTTGGTGATAGTGGCTTTTTAAGTG
ATTAGAAATAATGAGGTTATCTTTAGAACTCGTGAACAACAACACGCTTT
CAATATGCCATTCCAATTGGGTACTCAATCAATTGATCGTCCAATTCACT
CTATAACCGCAAGTTTCCCAGCTGAGAAAGGTGATTTAATTATAATGGGT
ACTGATGGTGTTTTCGATAATCTCTTTGATGATGAAATCTTGGAAATCGG
TGAAAAATATGATGACCCACAAATCATAGCACGTCAAGTCGCTAAAAGAG
CTTTCGAAGTTGGTTGTTCAACAACTATCTATACTCCTTTCGCTAAAAAT
GCTGGTCACAATGGTTACATTTATAATGGTGGTAAATTAGATGATATCAC
TGTAGTTGTAGGTTTGGTTGATGATGGTCCACTTAGACCAGTTAAACCAG
ATTTATTATTATTAGATGAAGAAGTTGCTCAATAAATTTAATTTTAATCA
TCATTTTTATATATTACTTTACGAAATAAAAAAAAAAAAAAAAAAAAAAA
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCATCAAAGAAATTTACAA
AACTAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1672
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2848561
End point 2850233
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U03598
List of clone(s) 

est1=SSL876F,1,560
est2=SFH224E,282,1525
est3=SSF834Z,896,1587
est4=SSL876Z,909,1612
est5=SSF737E,1021,1673
Translated Amino Acid sequence 
INSIIKETLTKSSNSVLLKSSQKNCKVSSGTINNNIFRNSKFTTSNLTLTTSTTLNTKNS
IFNFEQNKKTLGCLLFTTTFLFNSTTTNNDSIKTFCTNTTTTTTTTTTNNNNNNSNINIM
IDTMTINDASAASTSSTVAEDCLSTTIDATATITDTTTNHKTYVDEAMQDREMRDQNNNS
NDDSTDEINNIDKNKSNNIDKEEQEQEEEEEEDNTNTNITSDDDETNQIINNINNINNYN
SEECIGGEGNFHLNSGVCVIPHPNKRHKGGEDAYFISIDQNVIGVADGVGGWGDVGIDPS
EYSNTLMKGSKIGADSQKVERDPLIIMEQGYQYAQDVKGSSTCCIVVLSAPHKYIISKSW
**wlfk*leimrlslelvnnntlsichsnwvlnqlivqftl*pqvsqlrkvi*l*wvlmv
fsiislmmkswksvknmmthks*hvkslkelsklvvqqlsillslkmlvtmvtfimvvn*
misl*l*vwlmmvhldqlnqiyyy*mkkllnkfnfnhhfyillyeikkkkkkkkkkkkkk
kkknhqrnlqn*kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
INSIIKETLTKSSNSVLLKSSQKNCKVSSGTINNNIFRNSKFTTSNLTLTTSTTLNTKNS
IFNFEQNKKTLGCLLFTTTFLFNSTTTNNDSIKTFCTNTTTTTTTTTTNNNNNNSNINIM
IDTMTINDASAASTSSTVAEDCLSTTIDATATITDTTTNHKTYVDEAMQDREMRDQNNNS
NDDSTDEINNIDKNKSNNIDKEEQEQEEEEEEDNTNTNITSDDDETNQIINNINNINNYN
SEECIGGEGNFHLNSGVCVIPHPNKRHKGGEDAYFISIDQNVIGVADGVGGWGDVGIDPS
EYSNTLMKGSKIGADSQKVERDPLIIMEQGYQYAQDVKGSSTCCIVVLSAPHKYIISKSW
**wlfk*leimrlslelvnnntlsichsnwvlnqlivqftl*pqvsqlrkvi*l*wvlmv
fsiislmmkswksvknmmthks*hvkslkelsklvvqqlsillslkmlvtmvtfimvvn*
misl*l*vwlmmvhldqlnqiyyy*mkkllnkfnfnhhfyillyeikkkkkkkkkkkkkk
kkknhqrnlqn*kkkkk


Frame B:
*il*lkkl*qrvviqyy*nqvkrivksqvelliitfleiqnlqlpi*h*qhqql*iqkiq
fltlnktkkl*vvfyllqlfyliqqqqitivlklfvpilqllqqqqqqiiiiiivi*is*
liq*l*mmlvllqpllqllkiv*vlllmlqpllqiqqliikhm*mkqckiek*eikiiia
mmivqmklii*ikikvii*ikknkskkkkkkkiiqiqi*hqmmmkqik**ii*ii*itii
vksv*vvkvifi*ilefvlfhiqikdikevkmhillv*ikm*lvlqmvlvdgvmsvlihq
niqih**kvqrlapthkklnvihslswnkatntpktsrvvahvv*wfyrppinilsanlg
dsgflsd*k**gyl*ns*tttrfqyaipigysin*ssnslynrkfps*er*fnyngy*wc
fr*sl***nlgnr*ki**ptnhstssr*ksfrswlfnnylysfr*kcwsqwlhl*ww*ir
*yhcscrfg**wst*ts*trfiiir*rscsinliliiifiyyftk*kkkkkkkrkkkkkk
kkktikeiyktkkkkkk


Frame C:
kfyn*rnfnke**fsiikikskel*slkwny***hf*kfkiynfqfninninnfkykkfn
f*l*tkqknfrlsfiyynffi*fnnnk*r*y*nflyqyynyynnnnnk*******ykyhd
*yndyk*c*ccfnlfysc*rlskyyy*cyshyyrynn*s*nicr*snar*rnersk***q
***yr*n**yr*k*k**yr*rrtrarrrrrrr*ykykynir***nksnnk*yk*yk*l**
*rvyrw*r*fsfkfwslcystsk*kt*rr*rcify*yrskcnwccrwcwwmg*cry*sir
ifkyinerfkdwrrltks*t*sthyhgtrlpirprrqg**hmlysgfigpp*iyyqqilv
ivaf*virnnevifrtreqqhafnmpfqlgtqsidrpihsitasfpaekgdliimgtdgv
fdnlfddeileigekyddpqiiarqvakrafevgcsttiytpfaknaghngyiynggkld
ditvvvglvddgplrpvkpdlllldeevaq*i*f*ssflyitlrnkkkkkkkkekkkkkk
kkkpskkftklkkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03598-1 (Contig-U03598-1Q)
/CSM_Contig/Contig-U03598-1Q.Seq.d
         (1672 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Conti...  1697  0.0
Contig-U11377-1 (Contig-U11377-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U01312-1 (Contig-U01312-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U14287-1 (Contig-U14287-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U14137-1 (Contig-U14137-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U12965-1 (Contig-U12965-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U11082-1 (Contig-U11082-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U12674-1 (Contig-U12674-1Q) /CSM_Contig/Conti...    36  0.12

>Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Contig-U03598-1Q.Seq.d
          Length = 1672

 Score = 1697 bits (856), Expect = 0.0
 Identities = 856/856 (100%)
 Strand = Plus / Plus

                                                                        
Query: 722  gtgaagagtgtataggtggtgaaggtaattttcatttaaattctggagtttgtgttattc 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  gtgaagagtgtataggtggtgaaggtaattttcatttaaattctggagtttgtgttattc 781

                                                                        
Query: 782  cacatccaaataaaagacataaaggaggtgaagatgcatattttattagtatagatcaaa 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  cacatccaaataaaagacataaaggaggtgaagatgcatattttattagtatagatcaaa 841

                                                                        
Query: 842  atgtaattggtgttgcagatggtgttggtggatggggtgatgtcggtattgatccatcag 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  atgtaattggtgttgcagatggtgttggtggatggggtgatgtcggtattgatccatcag 901

                                                                        
Query: 902  aatattcaaatacattaatgaaaggttcaaagattggcgccgactcacaaaaagttgaac 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  aatattcaaatacattaatgaaaggttcaaagattggcgccgactcacaaaaagttgaac 961

                                                                        
Query: 962  gtgatccactcattatcatggaacaaggctaccaatacgcccaagacgtcaagggtagta 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  gtgatccactcattatcatggaacaaggctaccaatacgcccaagacgtcaagggtagta 1021

                                                                        
Query: 1022 gcacatgttgtatagtggttttatcggccccccataaatatattatcagcaaatcttggt 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 gcacatgttgtatagtggttttatcggccccccataaatatattatcagcaaatcttggt 1081

                                                                        
Query: 1082 gatagtggctttttaagtgattagaaataatgaggttatctttagaactcgtgaacaaca 1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 gatagtggctttttaagtgattagaaataatgaggttatctttagaactcgtgaacaaca 1141

                                                                        
Query: 1142 acacgctttcaatatgccattccaattgggtactcaatcaattgatcgtccaattcactc 1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 acacgctttcaatatgccattccaattgggtactcaatcaattgatcgtccaattcactc 1201

                                                                        
Query: 1202 tataaccgcaagtttcccagctgagaaaggtgatttaattataatgggtactgatggtgt 1261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tataaccgcaagtttcccagctgagaaaggtgatttaattataatgggtactgatggtgt 1261

                                                                        
Query: 1262 tttcgataatctctttgatgatgaaatcttggaaatcggtgaaaaatatgatgacccaca 1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 tttcgataatctctttgatgatgaaatcttggaaatcggtgaaaaatatgatgacccaca 1321

                                                                        
Query: 1322 aatcatagcacgtcaagtcgctaaaagagctttcgaagttggttgttcaacaactatcta 1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 aatcatagcacgtcaagtcgctaaaagagctttcgaagttggttgttcaacaactatcta 1381

                                                                        
Query: 1382 tactcctttcgctaaaaatgctggtcacaatggttacatttataatggtggtaaattaga 1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 tactcctttcgctaaaaatgctggtcacaatggttacatttataatggtggtaaattaga 1441

                                                                        
Query: 1442 tgatatcactgtagttgtaggtttggttgatgatggtccacttagaccagttaaaccaga 1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 tgatatcactgtagttgtaggtttggttgatgatggtccacttagaccagttaaaccaga 1501

                                                                        
Query: 1502 tttattattattagatgaagaagttgctcaataaatttaattttaatcatcatttttata 1561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 tttattattattagatgaagaagttgctcaataaatttaattttaatcatcatttttata 1561

                            
Query: 1562 tattactttacgaaat 1577
            ||||||||||||||||
Sbjct: 1562 tattactttacgaaat 1577


 Score =  565 bits (285), Expect = e-161
 Identities = 299/306 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaattctataattaaagaaactttaacaaagagtagtaattcagtattattaaaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaattctataattaaagaaactttaacaaagagtagtaattcagtattattaaaatca 60

                                                                       
Query: 61  agtcaaaagaattgtaaagtctcaagtggaactattaataataacatttttagaaattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtcaaaagaattgtaaagtctcaagtggaactattaataataacatttttagaaattca 120

                                                                       
Query: 121 aaatttacaacttccaatttaacattaacaacatcaacaactttaaatacaaaaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatttacaacttccaatttaacattaacaacatcaacaactttaaatacaaaaaattca 180

                                                                       
Query: 181 atttttaactttgaacaaaacnnnnnnnctttaggttgtcttttatttactacaactttt 240
           |||||||||||||||||||||       ||||||||||||||||||||||||||||||||
Sbjct: 181 atttttaactttgaacaaaacaaaaaaactttaggttgtcttttatttactacaactttt 240

                                                                       
Query: 241 ttatttaattcaacaacaacaaataacgatagtattaaaactttttgtaccaatactaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttatttaattcaacaacaacaaataacgatagtattaaaactttttgtaccaatactaca 300

                 
Query: 301 actact 306
           ||||||
Sbjct: 301 actact 306


 Score =  341 bits (172), Expect = 1e-93
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                       
Query: 356 tcatgattgatacaatgactataaatgatgctagtgctgcttcaacctcttctacagttg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcatgattgatacaatgactataaatgatgctagtgctgcttcaacctcttctacagttg 415

                                                                       
Query: 416 ctgaagattgtctaagtactactattgatgctacagccactattacagatacaacaacta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctgaagattgtctaagtactactattgatgctacagccactattacagatacaacaacta 475

                                                               
Query: 476 atcataaaacatatgtagatgaagcaatgcaagatagagaaatgagagatca 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atcataaaacatatgtagatgaagcaatgcaagatagagaaatgagagatca 527


 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 639 taatacaaatacaaatataacatcagatgatgatgaaacaaatc 682
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 taatacaaatacaaatataacatcagatgatgatgaaacaaatc 682


 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 251 caacaacaacaaataa 266
           ||||||||||||||||
Sbjct: 314 caacaacaacaaataa 329


>Contig-U11377-1 (Contig-U11377-1Q) /CSM_Contig/Contig-U11377-1Q.Seq.d
          Length = 1403

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1494 aaaccagatttattattatta 1514
            |||||||||||||||||||||
Sbjct: 1295 aaaccagatttattattatta 1275


>Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
          Length = 1635

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1541 attttaatcatcatttttat 1560
            ||||||||||||||||||||
Sbjct: 113  attttaatcatcatttttat 132


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,788
Number of Sequences: 6905
Number of extensions: 44788
Number of successful extensions: 4963
Number of sequences better than 10.0: 479
length of query: 1672
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1656
effective length of database: 5,564,391
effective search space: 9214631496
effective search space used: 9214631496
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 4
Homology vs DNA 
Query= Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Contig-U03598-1Q.Seq.d
         (1672 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93930) Dictyostelium discoideum slug cDNA, clone SSL876.       1164   0.0    2
(C92684) Dictyostelium discoideum slug cDNA, clone SSF834.        955   0.0    3
(BJ400878) Dictyostelium discoideum cDNA clone:dds15o06, 3' ...   769   0.0    4
(BJ391130) Dictyostelium discoideum cDNA clone:dds15o06, 5' ...   351   0.0    3
(AU073027) Dictyostelium discoideum slug cDNA, clone SSF737.      331   e-113  3
(AU074790) Dictyostelium discoideum slug cDNA, clone SSL876.      278   3e-81  2
(C93069) Dictyostelium discoideum slug cDNA, clone SSF737.        174   7e-39  1
(EC763003) PSE00008141 rw_mgpallid Polysphondylium pallidum ...   105   5e-18  1
(FF568089) TTBB955TG Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(CN598538) TTE00006905 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FF569097) TTBC266TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(FF567522) TTBAS48TG Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(FF569448) TTBCC88TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(FF566860) TTBA879TG Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(FF569237) TTBC644TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(FF568444) TTBBK52TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(CN595787) TTE00012494 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN595723) TTE00012958 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FF569297) TTBC855TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(FF567777) TTBB038TG Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(CN595066) TTE00009981 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN594749) TTE00015376 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN594702) TTE00009211 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FF568829) TTBBV48TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(CN593106) TTE00013387 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN593055) TTE00010897 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN593001) TTE00011852 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN592770) TTE00013007 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN592672) TTE00008533 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN591846) TTE00012830 Normalized large Tetrahymena thermoph...    40   3e-04  2
(CN591216) TTE00015196 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FH700108) CHO_OF5151xh13r1.ab1 CHO_OF5 Nicotiana tabacum ge...    50   3e-04  2
(FF570312) TTBCZ65TV Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(CN590959) TTE00009020 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FF567702) TTBAY13TG Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(FF569281) TTBC793TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(FF570235) TTBCX64TV Tetrahymena thermophila CU428 log phase...    40   3e-04  2
(CN590632) TTE00011273 Normalized large Tetrahymena thermoph...    40   3e-04  2
(FF568596) TTBBO81TVB Tetrahymena thermophila CU428 log phas...    40   3e-04  2
(AC147178) Medicago truncatula clone mth2-142i4, complete se...    56   5e-04  4
(CT782096) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   0.001  2
(CT738537) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   0.001  2
(EB663586) 75W_JR-rd_A06 pAPO Cenchrus ciliaris cDNA 5', mRN...    48   0.002  2
(AL398980) T7 end of clone AS0AA012D01 of library AS0AA from...    42   0.003  2
(AC225458) Medicago truncatula clone mth2-161l3, WORKING DRA...    56   0.005  1
(EK153101) 1095456062166 Global-Ocean-Sampling_GS-31-01-01-1...    56   0.005  1
(CX518620) s13dNF34B03VI025_424073 Virus-Infected Leaves Med...    56   0.005  1
(FE709764) Pv011C_M13F_B05.ab1 Phaseolus vulgaris cv Early g...    56   0.005  1
(FE688383) Pv013C_M13R_G10.ab1 Phaseolus vulgaris cv Early g...    56   0.005  1
(FE688381) Pv045B_M13F_E05.ab1 Phaseolus vulgaris cv Early g...    56   0.005  1
(AW775888) EST334953 DSIL Medicago truncatula cDNA clone pDS...    56   0.005  1
(EC947207) WIN0540.C21_P16 Cab Sauv flower, leaf and root no...    40   0.010  3
(AC210013) Zea mays chromosome 5 clone CH201-484E1; ZMMBBc04...    54   0.018  1
(AC202968) Zea mays chromosome 5 clone CH201-284F9; ZMMBBc02...    54   0.018  1
(DC537804) Bombyx mori cDNA, clone:E_FL_MFB-_21G14_F_0, 5' e...    54   0.018  1
(CN845027) EST2977 Zea mays embryo sac cDNA library Zea mays...    54   0.018  1
(CF449714) EST686059 normalized cDNA library of onion Allium...    54   0.018  1
(BP116341) Bombyx mori cDNA, clone:brP-2385, 5' end sequence.      54   0.018  1
(CN144022) WOUND1_19_F01.g1_A002 Wounded leaves Sorghum bico...    44   0.031  2
(DV867624) CRP7356 Creeping bentgrass EST Agrostis stolonife...    40   0.033  2
(ER574951) 1093015809437 Global-Ocean-Sampling_GS-36-01-01-2...    52   0.071  1
(EE189935) ZM_BFc0185O23.f ZM_BFc Zea mays cDNA clone ZM_BFc...    52   0.071  1
(EB682250) KP1B.112A07F.060117T7 KP1B Nicotiana tabacum cDNA...    52   0.071  1
(EE099365) S9B05011 Ripening Berries (VvS9) Vitis vinifera c...    40   0.087  3
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.13   11
(AJ863169) Orpinomyces sp. OUS1 partial azr1 gene for putati...    34   0.21   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   0.26   14
(DQ423072) Coffea canephora mitochondrial catalytic protein ...    50   0.28   1
(DQ423071) Solanum tuberosum mitochondrial catalytic protein...    50   0.28   1
(DQ423068) Petunia axillaris subsp. parodii mitochondrial ca...    50   0.28   1
(DQ423066) Solanum lycopersicum mitochondrial catalytic prot...    50   0.28   1
(DQ423065) Physalis sp. TA1367 mitochondrial catalytic prote...    50   0.28   1
(AC229682) Solanum lycopersicum chromosome 12 clone LE_HBa-7...    50   0.28   1
(AC229679) Solanum lycopersicum chromosome 12 clone LE_HBa-5...    50   0.28   1
(CR974470) L.saxatilis DNA sequence from clone CH317-148L22.       50   0.28   1
(AK247295) Solanum lycopersicum cDNA, clone: LEFL1088DF09, H...    50   0.28   1
(FH074185) CHO_OF3030xg07r1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.28   1
(FH044310) CHO_OF3184xj19f1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.28   1
(EL399120) CFFS10442.b1_C19.ab1 CFF(LMS) safflower Carthamus...    50   0.28   1
(EC757215) PPE00003549 Agencourt Biosciences Agen-0020 Non-n...    50   0.28   1
(CF033366) QCF15g11.yg QCF Zea mays cDNA clone QCF15g11, mRN...    50   0.28   1
(BI934852) EST554741 tomato flower, anthesis Solanum lycoper...    50   0.28   1
(GE612429) CCPX9191.b1_N18.ab1 CCP(UWX) Globe Artichoke Cyna...    50   0.28   1
(GE611070) CCPX7909.b1_I10.ab1 CCP(UWX) Globe Artichoke Cyna...    50   0.28   1
(GE606832) CCPX3934.b1_K23.ab1 CCP(UWX) Globe Artichoke Cyna...    50   0.28   1
(GE578218) CCPU2307.b1_E01.ab1 CCP(UWX) Globe Artichoke Cyna...    50   0.28   1
(CV216082) EST875792 non-normalized T1 cDNA library Trichomo...    48   0.41   2
(CV218722) EST878432 non-normalized T1 cDNA library Trichomo...    48   0.41   2
(AG521835) Mus musculus molossinus DNA, clone:MSMg01-428P24....    42   0.42   2
(CV708324) UCRPT01_0011C08_f Poncirus trifoliata CTV-challen...    48   0.42   2
(EY729865) CS00-C3-704-022-D03-CT.F Sweet orange fruit, deve...    48   0.42   2
(CV216083) EST875793 non-normalized T1 cDNA library Trichomo...    48   0.43   2
(CB291704) UCRCS01_03bd06_b1 Washington Navel orange cold ac...    48   0.44   2
(AM425120) Vitis vinifera contig VV78X113340.17, whole genom...    38   0.65   2
(BQ834860) Po_ad_04D01_TEXF1 Psoroptes ovis mixed Psoroptes ...    34   0.80   2
(AE017263) Mesoplasma florum L1 complete genome.                   36   0.94   16
(DQ423070) Capsicum annuum mitochondrial catalytic protein (...    48   1.1    1
(CU914526) S.lycopersicum DNA sequence from clone LE_HBa-170...    48   1.1    1
(AM460849) Vitis vinifera contig VV78X197538.11, whole genom...    48   1.1    1
(AC202518) Medicago truncatula clone mth2-6p16, WORKING DRAF...    48   1.1    1
(AC191961) Zea mays chromosome 2 clone CH201-363I16; ZMMBBc0...    48   1.1    1
(AK247453) Solanum lycopersicum cDNA, clone: LEFL1026BD10, H...    48   1.1    1
(EK354698) 1095468462467 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EK309229) 1095462391200 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EK022271) 1092955340171 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EJ779697) 1093011952544 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(AM627315) Entamoeba dispar GSS, clone dispar20f11.q1k.            48   1.1    1
(EJ702922) 1092956042776 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(EJ695202) 1092956016338 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.1    1
(EJ206489) 1092344353405 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.1    1
(EJ176584) 1092344103011 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.1    1
(DX849664) ZMMBLz0003I19.r ZMMBLz Zea mays genomic clone ZMM...    48   1.1    1
(DX848334) ZMMBLz0001I19.r ZMMBLz Zea mays genomic clone ZMM...    48   1.1    1
(DX455211) MAMAP31TR MA4 Musa acuminata genomic clone MA4-7E...    48   1.1    1
(CZ994215) 181767 Tomato MboI BAC Library Solanum lycopersic...    48   1.1    1
(CE031375) tigr-gss-dog-17000347824742 Dog Library Canis lup...    48   1.1    1
(CC445602) PUHEX91TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   1.1    1
(EL908259) INIT2_24_B01.b1_A006 G5 trophont cDNA (INIT2) Ich...    48   1.1    1
(EC953488) WIN0558.C21_O04 Cab Sauv flower, leaf and root no...    48   1.1    1
(EC939469) WIN059.C21_L01 Cab Sauv flower, leaf and root nor...    48   1.1    1
(DY885823) CeleSEQ1273 Cunninghamella elegans pBluescript (E...    48   1.1    1
(DR909848) USDA-FP_17976 Citrus sinensis phloem Citrus sinen...    48   1.1    1
(CO985978) GM89006B1F03.f1 Gm-r1089 Glycine max cDNA clone G...    48   1.1    1
(CO979952) GM89006B1F03.r1 Gm-r1089 Glycine max cDNA clone G...    48   1.1    1
(CO776604) JH02015E08 JH-201 Capsicum annuum cDNA 5', mRNA s...    48   1.1    1
(CB972224) CAB10006_Ia_Fa_B04 Cabernet Sauvignon Flower Pre-...    48   1.1    1
(CB971509) CAB10005_IVa_Fa_B04 Cabernet Sauvignon Flower Pre...    48   1.1    1
(CB551124) MMSP0043_B05 MMSP Macaca mulatta cDNA, mRNA seque...    48   1.1    1
(CA812681) CA48LN07IF-C10 Cabernet Sauvignon Leaf - CA48LN V...    48   1.1    1
(FG156212) AGN_RNC029xp09f1.ab1 AGN_RNC Nicotiana tabacum cD...    48   1.1    1
(EY716738) CS00-C3-702-070-H05-CT.F Sweet orange fruit, deve...    48   1.1    1
(EV279792) GLNAM08TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    48   1.1    1
(BY894142) Cryptomeria japonica cDNA clone: CMFL045_I10, 5'e...    36   1.3    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   1.5    9
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   1.6    13
(AC216943) Populus trichocarpa clone POP051-N24, complete se...    36   1.6    7
(CA253438) SCJLFL4100G09.g FL4 Saccharum officinarum cDNA cl...    38   1.7    2
(EJ844955) 1093017850731 Global-Ocean-Sampling_GS-30-02-01-1...    42   1.9    2
(CR388183) Zebrafish DNA sequence from clone DKEY-27P12.           36   2.2    2
(AL929306) Zebrafish DNA sequence from clone CH211-145C5 in ...    36   2.2    2
(CU651678) Zebrafish DNA sequence from clone CH73-47C13 in l...    36   2.3    2
(AM454174) Vitis vinifera contig VV78X104811.2, whole genome...    40   2.3    3
(EV849095) FTSAO56TF Tetrahymena thermophila SB210 cDNA libr...    40   2.8    2
(CL024778) CH216-20D23_Sp6.1 CH216 Xenopus (Silurana) tropic...    36   2.9    2
(AP010260) Solanum lycopersicum DNA, chromosome 8, clone: C0...    44   3.1    6
(DT688626) s13dFA54D07FM062_483846 Tall fescue, Festuca arun...    40   4.1    2
(FK810362) PRAG-aad26b05.g1 Sand_fly_EST_Normalized Phleboto...    38   4.2    2
(BR000076) TPA_exp: Ciona intestinalis Ci-ZF(CCHC)-8 mRNA fo...    46   4.4    1
(DQ423067) Solanum melongena mitochondrial catalytic protein...    46   4.4    1
(EA427609) Sequence 88 from patent US 7332281.                     46   4.4    1
(EA333138) Sequence 5630 from patent US 7306913.                   46   4.4    1
(EA138068) Sequence 2383 from patent US 7214786.                   46   4.4    1
(DL007628) NOVEL THERAPEUTIC TARGETS IN CANCER.                    46   4.4    1
(CS741912) Sequence 9908 from Patent WO2005083127.                 46   4.4    1
(GC699769) Sequence 15014 from patent US 6812339.                  46   4.4    1
(GC696595) Sequence 11839 from patent US 6812339.                  46   4.4    1
(CT476813) L.saxatilis DNA sequence from clone CH317-88D12.        46   4.4    1
(AB044624) Appias nero mitochondrial ND5 gene for NADH dehyd...    46   4.4    1
(AL133330) Human DNA sequence from clone RP1-68D18 on chromo...    46   4.4    1
(AC149461) Papio anubis clone RP41-444A21, WORKING DRAFT SEQ...    46   4.4    1
(FH044358) CHO_OF3184xj19r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   4.4    1
(ER387246) 1094428685951 Global-Ocean-Sampling_GS-34-01-01-1...    46   4.4    1
(EK581719) 1095521720801 Global-Ocean-Sampling_GS-32-01-01-1...    46   4.4    1
(EK167312) 1095458059096 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.4    1
(EJ994369) 1093023075692 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.4    1
(EJ994085) 1093023074540 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.4    1
(AM632029) Entamoeba dispar GSS, clone dispar83f11.q1k.            46   4.4    1
(EJ553745) 1092959479945 Global-Ocean-Sampling_GS-29-01-01-1...    46   4.4    1
(EJ138445) 1092343630615 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.4    1
(EI935523) VUH2-70O18TV VUUBBa (VUH2) Vigna unguiculata geno...    46   4.4    1
(EG377112) BG01012B2G07.f1 BG01 - normalized library Leymus ...    46   4.4    1
(EC984727) WIN1122.C21_M09 Muscat Hamburg pre-veraison berry...    46   4.4    1
(DT597997) wmi03-11ms3-e09 Wmi03 Welwitschia mirabilis cDNA ...    46   4.4    1
(DN183900) HO16H01S HO Hordeum vulgare cDNA clone HO16H01 5-...    46   4.4    1
(CV374591) PM3-HT0909-101100-026-f11_1 HT0909 Homo sapiens c...    46   4.4    1
(AL820807) Triticum aestivum (mercia) clone C01_O232_plate_3...    46   4.4    1
(CK162580) FGAS015177 Triticum aestivum FGAS: Library 4 Gate...    46   4.4    1
(CK124611) BES1824109m09 BES1824 Hordeum vulgare subsp. vulg...    46   4.4    1
(CJ639563) Triticum aestivum cDNA clone whec17f23 5', Y.Ogih...    46   4.4    1
(CJ504205) Triticum aestivum cDNA clone whfl53j09 5', Y.Ogih...    46   4.4    1
(CJ500759) Triticum aestivum cDNA clone whfl39g05 5', Y.Ogih...    46   4.4    1
(CJ498882) Triticum aestivum cDNA clone whfl31d06 5', Y.Ogih...    46   4.4    1
(CJ495933) Triticum aestivum cDNA clone whfl1e10 5', Y.Ogiha...    46   4.4    1
(CJ494294) Triticum aestivum cDNA clone whfl13a20 5', Y.Ogih...    46   4.4    1
(CJ493706) Triticum aestivum cDNA clone whfl10e21 5', Y.Ogih...    46   4.4    1
(CA697159) wlk4.pk0011.g4 wlk4 Triticum aestivum cDNA clone ...    46   4.4    1
(CA605158) wr1.pk0050.c1 wr1 Triticum aestivum cDNA clone wr...    46   4.4    1
(CA397277) cs89b07.y1 Human Retinal pigment epithelium/choro...    46   4.4    1
(CA009192) HU13H03r HU Hordeum vulgare subsp. vulgare cDNA c...    46   4.4    1
(BU976614) HA03P21r HA Hordeum vulgare subsp. vulgare cDNA c...    46   4.4    1
(BU969822) HB12L10r BC Hordeum vulgare subsp. vulgare cDNA c...    46   4.4    1
(BJ316438) Triticum aestivum cDNA clone:whyf23c07, 5' end, s...    46   4.4    1
(BJ300262) Triticum aestivum cDNA clone:whyd1e16, 5' end, si...    46   4.4    1
(BJ209640) Triticum aestivum cDNA clone:wh15a18, 5' end, sin...    46   4.4    1
(BF257039) HVSMEf0011L03f Hordeum vulgare seedling root EST ...    46   4.4    1
(BE398195) WHE0002.B06F000702 ITEC WHE Wheat Endosperm Libra...    46   4.4    1
(FK874016) EST_crog_evp_903066 crog_evp Caligus rogercressey...    46   4.4    1
(FG923046) UCRVU09_CCNT5694_b1 Cowpea UCR 707 Mixed Tissue a...    46   4.4    1
(FG881461) UCRVU07_CCNP14196_b1 Cowpea UCR 779 Mixed Tissue ...    46   4.4    1
(FF360134) BG02038A1B08.f1 BG02 - primary and normalized lib...    46   4.4    1
(FF359298) BG02032B2H11.f1 BG02 - primary and normalized lib...    46   4.4    1
(FE807908) CCAG27695.b1 CCAG Petrolisthes cinctipes heart, g...    46   4.4    1
(FE762728) CCAG1079.b7 CCAG Petrolisthes cinctipes heart, gi...    46   4.4    1
(FE688384) Pv011C_M13R_B05.ab1 Phaseolus vulgaris cv Early g...    46   4.4    1
(FD472544) RDB_8_6c RDB Triticum turgidum subsp. durum cDNA ...    46   4.4    1
(FD472538) RDB_8_5b RDB Triticum turgidum subsp. durum cDNA ...    46   4.4    1
(FD472422) RDB_6_1b RDB Triticum turgidum subsp. durum cDNA ...    46   4.4    1
(FD472295) RDB_11_9a RDB Triticum turgidum subsp. durum cDNA...    46   4.4    1
(FD471916) RDB_11_1c RDB Triticum turgidum subsp. durum cDNA...    46   4.4    1
(CP000049) Borrelia turicatae 91E135, complete genome.             46   4.4    1
(AJ938182) Staphylococcus aureus RF122 complete genome.            46   4.4    1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    34   4.7    7
(AU246268) Lolium multiflorum cDNA clone:CA009F02-5.               40   4.7    2
(EY204269) PRAG-aaa57g07.g1 Sand_fly_EST_Normalized Phleboto...    38   5.1    2
(AG286510) Mus musculus molossinus DNA, clone:MSMg01-059P05....    42   5.1    2
(EY202861) PRAG-aaa86b12.g1 Sand_fly_EST_Normalized Phleboto...    38   5.3    2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   5.4    11
(EY215552) PRAG-aaa85d08.g1 Sand_fly_EST_Normalized Phleboto...    38   5.6    2
(EY214511) PRAG-aab27d09.g1 Sand_fly_EST_Normalized Phleboto...    38   5.6    2
(EY079272) CAZI13722.fwd CAZI Artemisia annua normalized lea...    42   5.7    2
(CZ518387) GMW2-79O23a.g1 GMW2 Glycine max genomic, genomic ...    42   6.7    2
(EF633601) Seriatopora caliendrum mitochondrion, complete ge...    44   6.9    2
(AM446812) Vitis vinifera, whole genome shotgun sequence, co...    34   8.8    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   8.8    8
(AM464293) Vitis vinifera contig VV78X098348.20, whole genom...    34   9.0    2

>(C93930) Dictyostelium discoideum slug cDNA, clone SSL876.
          Length = 702

 Score = 1164 bits (587), Expect(2) = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Plus


Query: 964  gatccactcattatcatggaacaaggctaccaatacgcccaagacgtcaagggtagtagc 1023
            ||||||||||||||| |||  ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 55   gatccactcattatcctgggccaaggctaccattacgcccaagacgtcaagggtagtcgc 114


Query: 1024 acatgttgtatagtggttttatcggccccccataaatatattatcagcaaatcttggtga 1083
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115  ccatgttgtatagtggttttatcggccccccataaatatattatcagcaaatcttggtga 174


Query: 1084 tagtggctttttaagtgattagaaataatgaggttatctttagaactcgtgaacaacaac 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175  tagtggctttttaagtgattagaaataatgaggttatctttagaactcgtgaacaacaac 234


Query: 1144 acgctttcaatatgccattccaattgggtactcaatcaattgatcgtccaattcactcta 1203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235  acgctttcaatatgccattccaattgggtactcaatcaattgatcgtccaattcactcta 294


Query: 1204 taaccgcaagtttcccagctgagaaaggtgatttaattataatgggtactgatggtgttt 1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295  taaccgcaagtttcccagctgagaaaggtgatttaattataatgggtactgatggtgttt 354


Query: 1264 tcgataatctctttgatgatgaaatcttggaaatcggtgaaaaatatgatgacccacaaa 1323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355  tcgataatctctttgatgatgaaatcttggaaatcggtgaaaaatatgatgacccacaaa 414


Query: 1324 tcatagcacgtcaagtcgctaaaagagctttcgaagttggttgttcaacaactatctata 1383
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  tcatagcncgtcaagtcgctaaaagagctttcgaagttggttgttcaacaactatctata 474


Query: 1384 ctcctttcgctaaaaatgctggtcacaatggttacatttataatggtggtaaattagatg 1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  ctcctttcgctaaaaatgctggtcacaatggttacatttataatggtggtaaattagatg 534


Query: 1444 atatcactgtagttgtaggtttggttgatgatggtccacttagaccagttaaaccagatt 1503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  atatcactgtagttgtaggtttggttgatgatggtccacttagaccagttaaaccagatt 594


Query: 1504 tattattattagatgaagaagttgctcaataaatttaattttaatcatcatttttatata 1563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  tattattattagatgaagaagttgctcaataaatttaattttaatcatcatttttatata 654


Query: 1564 ttactttacgaaat 1577
            ||||||||||||||
Sbjct: 655  ttactttacgaaat 668

 Score = 42.1 bits (21), Expect(2) = 0.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 935 ttggcgccgactcacaaaaagttga 959
           ||||||||||||| |||||||||||
Sbjct: 27  ttggcgccgactcccaaaaagttga 51

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,623,878,607
Number of extensions: 106100954
Number of successful extensions: 9180045
Number of sequences better than 10.0: 227
Length of query: 1672
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1648
Effective length of database: 99,340,224,878
Effective search space: 163712690598944
Effective search space used: 163712690598944
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Contig-U03598-1Q.Seq.d
         (1672 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT033800_1(BT033800|pid:none) Zea mays full-length cDNA clone ZM...    91   2e-27
AC135595_20(AC135595|pid:none) Oryza sativa chromosome 3 BAC OSJ...    88   1e-25
(Q9LVQ8) RecName: Full=Probable protein phosphatase 2C 80;      ...    84   1e-24
AL161544_17(AL161544|pid:none) Arabidopsis thaliana DNA chromoso...    86   1e-24
AC147178_9(AC147178|pid:none) Medicago truncatula clone mth2-142...    87   9e-23
(O64730) RecName: Full=Probable protein phosphatase 2C 26;      ...    81   1e-21
AY357944_1(AY357944|pid:none) Homo sapiens T-cell activation pro...    91   1e-20
(Q8NI37) RecName: Full=Protein phosphatase PTC7 homolog;        ...    91   1e-20
AK078914_1(AK078914|pid:none) Mus musculus adult male cecum cDNA...    91   2e-20
(Q6NVE9) RecName: Full=Protein phosphatase PTC7 homolog;        ...    91   2e-20
(Q5U3N5) RecName: Full=Protein phosphatase PTC7 homolog;        ...    89   8e-20
CP001574_494(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    74   2e-19
CP000581_243(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    70   4e-19
(Q6GR25) RecName: Full=Protein phosphatase PTC7 homolog;        ...    86   1e-18
(Q942P9) RecName: Full=Probable protein phosphatase 2C 1;       ...    76   2e-18
AK162261_1(AK162261|pid:none) Mus musculus in vitro fertilized e...    91   5e-18
EU959492_1(EU959492|pid:none) Zea mays clone 218324 protein phos...    70   3e-17
AK340564_1(AK340564|pid:none) Acyrthosiphon pisum ACYPI000335 mR...    79   5e-17
T00581(T00581;D84705)hypothetical protein At2g30170 [imported] -...    63   3e-16
CP000584_85(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ...    72   5e-16
EF094939_1(EF094939|pid:none) Solanum lycopersicum cv. Heinz1706...    67   5e-16
AY231981_1(AY231981|pid:none) Drosophila yakuba clone yak-em_CG1...    86   7e-16
AM910990_91(AM910990|pid:none) Plasmodium knowlesi strain H chro...    87   2e-15
CR954204_100(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    69   5e-15
AC023489_31(AC023489|pid:none) Trypanosoma brucei chromosome 4 c...    73   1e-14
(Q10QL5) RecName: Full=Probable protein phosphatase 2C BIPP2C1; ...    83   3e-14
AM502235_11(AM502235|pid:none) Leishmania infantum chromosome 17.      81   1e-13
CT005271_76(CT005271|pid:none) Leishmania major strain Friedlin,...    81   1e-13
(B4M5T5) RecName: Full=Protein phosphatase PTC7 homolog fig; Alt...    71   1e-13
T26302(T26302) hypothetical protein W09D10.4 - Caenorhabditis el...    77   3e-13
BT067381_1(BT067381|pid:none) Zea mays full-length cDNA clone ZM...    79   5e-13
(Q339D2) RecName: Full=Probable protein phosphatase 2C 71;      ...    78   6e-13
AM269966_28(AM269966|pid:none) Aspergillus niger contig An01c019...    78   9e-13
AP007151_717(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    78   9e-13
AE014298_1079(AE014298|pid:none) Drosophila melanogaster chromos...    75   2e-12
(B4NBL6) RecName: Full=Protein phosphatase PTC7 homolog fig; Alt...    73   2e-12
AM502245_77(AM502245|pid:none) Leishmania infantum chromosome 27.      77   2e-12
BT067591_1(BT067591|pid:none) Zea mays full-length cDNA clone ZM...    75   6e-12
EU974203_1(EU974203|pid:none) Zea mays clone 442799 unknown mRNA.      75   6e-12
AM055943_20(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA...    73   4e-11
DQ658293_1(DQ658293|pid:none) Emiliania huxleyi clone Plate1_G11...    73   4e-11
(Q29AP0) RecName: Full=Protein phosphatase PTC7 homolog fig; Alt...    71   4e-11
(B4G653) RecName: Full=Protein phosphatase PTC7 homolog fig; Alt...    71   4e-11
AM920430_75(AM920430|pid:none) Penicillium chrysogenum Wisconsin...    72   5e-11
AY814152_1(AY814152|pid:none) Schistosoma japonicum SJCHGC06350 ...    71   1e-10
AM423804_3(AM423804|pid:none) Vitis vinifera contig VV78X135436....    71   1e-10
CT005264_213(CT005264|pid:none) Leishmania major strain Friedlin...    70   2e-10
BT068377_1(BT068377|pid:none) Zea mays full-length cDNA clone ZM...    70   2e-10
CU633867_65(CU633867|pid:none) Podospora anserina genomic DNA ch...    70   3e-10
AB049715_1(AB049715|pid:none) Pisum sativum ssa-4 mRNA for putat...    70   3e-10
AC105379_57(AC105379|pid:none) Trypanosoma brucei chromosome 3 c...    69   4e-10
AM494962_162(AM494962|pid:none) Leishmania braziliensis chromoso...    68   9e-10
EU973108_1(EU973108|pid:none) Zea mays clone 393424 T-cell activ...    66   4e-09
CR382131_1123(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    61   4e-08
S46810(S46810) hypothetical protein YHR076w - yeast (Saccharomyc...    59   4e-07
FN392319_1077(FN392319|pid:none) Pichia pastoris GS115 chromosom...    59   4e-07
(P38797) RecName: Full=Protein phosphatase 2C homolog 7, mitocho...    59   4e-07
CR382124_551(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    57   3e-06
DQ423068_1(DQ423068|pid:none) Petunia axillaris subsp. parodii m...    47   3e-06
AX039433_1(AX039433|pid:none) Sequence 4 from Patent WO0063399.        54   4e-06
CR749216_1(CR749216|pid:none) Homo sapiens mRNA; cDNA DKFZp686M0...    55   8e-06
FM992691_33(FM992691|pid:none) Candida dubliniensis CD36 chromos...    55   8e-06
DQ423071_1(DQ423071|pid:none) Solanum tuberosum mitochondrial ca...    44   1e-05
(Q09189) RecName: Full=5-azacytidine resistance protein azr1;  &...    52   1e-05
CU633901_261(CU633901|pid:none) Podospora anserina genomic DNA c...    52   2e-05
CR954203_511(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    53   3e-05
CP001141_303(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1...    53   3e-05
CR382137_871(CR382137|pid:none) Debaryomyces hansenii strain CBS...    51   1e-04
DQ423066_1(DQ423066|pid:none) Solanum lycopersicum mitochondrial...    41   2e-04
FN392322_931(FN392322|pid:none) Pichia pastoris GS115 chromosome...    50   2e-04
CP000498_94(CP000498|pid:none) Pichia stipitis CBS 6054 chromoso...    49   6e-04
AE014188_89(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    44   0.018
BT086608_1(BT086608|pid:none) Zea mays full-length cDNA clone ZM...    42   0.068
BT050970_1(BT050970|pid:none) Medicago truncatula clone MTYFD_FE...    41   0.15
AM910983_31(AM910983|pid:none) Plasmodium knowlesi strain H chro...    41   0.15
AM270379_3(AM270379|pid:none) Aspergillus niger contig An16c0270...    40   0.26
AM910995_76(AM910995|pid:none) Plasmodium knowlesi strain H chro...    40   0.34
CP000656_503(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co...    39   0.57
CP000686_3850(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    39   0.57
CR382132_524(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    39   0.57
CP000386_24(CP000386|pid:none) Rubrobacter xylanophilus DSM 9941...    38   1.3
BT052602_1(BT052602|pid:none) Medicago truncatula clone MTYFD_FE...    38   1.3
AM423804_1(AM423804|pid:none) Vitis vinifera contig VV78X135436....    37   1.7
CP000316_1321(CP000316|pid:none) Polaromonas sp. JS666, complete...    37   2.2
CP001191_1276(CP001191|pid:none) Rhizobium leguminosarum bv. tri...    36   4.9
FB819527_1(FB819527|pid:none) Sequence 38800 from Patent WO20080...    35   6.3
CP001392_3327(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...    35   6.3
AL606615_21(AL606615|pid:none) Oryza sativa genomic DNA, chromos...    35   8.3
(Q7XQU7) RecName: Full=Probable protein phosphatase 2C 41;      ...    35   8.3

>BT033800_1(BT033800|pid:none) Zea mays full-length cDNA clone
            ZM_BFc0163D07 mRNA, complete cds.
            &BT060734_1(BT060734|pid:none)
            &BT062884_1(BT062884|pid:none)
            &BT067320_1(BT067320|pid:none)
          Length = 466

 Score = 90.9 bits (224), Expect(3) = 2e-27
 Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
 Frame = +3

Query: 1092 F*VIRNNEVIFRTREQQHAFNMPFQLGTQS-IDRPIHSITASFPAEKGDLIIMGTDGVFD 1268
            F V+R+   + R+  QQH FN  +QL +    D P  +    FP   GD+I+ GTDG+FD
Sbjct: 330  FVVVRDGRTVLRSPSQQHDFNFTYQLESGGGSDLPSSAQVFHFPVAPGDVIVAGTDGLFD 389

Query: 1269 NLFDDEI-------LEIGEKYDDPQIIARQVAKRAFEVGCSTTIYTPFAKNAGHNGYIYN 1427
            NL+++EI       L +G    +PQI A+++A  A +        +PFA  A   GY Y
Sbjct: 390  NLYNNEISGVIVEALRVGL---EPQIAAQKIAALARQRATDKNRQSPFASAAQEAGYRYY 446

Query: 1428 GGKLDDITVVVGLV 1469
            GGKLDDITVVV  V
Sbjct: 447  GGKLDDITVVVSYV 460

 Score = 56.6 bits (135), Expect(3) = 2e-27
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +1

Query: 757  LNSGVCVIPHPNKRHKGGEDAYFISIDQNXXXXXXXXXXXXXXXXXPSEYSNTLMKGSKI 936
            L SG C +PHP K   GGEDA+FISID++                    Y+  LM+ S
Sbjct: 220  LLSGSCYLPHPAKEATGGEDAHFISIDEHVIGVADGVGGWADLGVDAGLYAKELMRNSMS 279

Query: 937  G-ADSQKVERDPLIIMEQGYQYAQDVKGSSTCCIVVL 1044
               D  +   DP  ++E+ Y  +   +GSST CI+ L
Sbjct: 280  AIKDEPEGTIDPTRVLEKAY-ISTKARGSSTACIITL 315

 Score = 20.4 bits (41), Expect(3) = 2e-27
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 1061 ILSANLGDSGFL 1096
            I + NLGDSGF+
Sbjct: 320  IHAVNLGDSGFV 331

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,593,327,875
Number of extensions: 26371579
Number of successful extensions: 84878
Number of sequences better than 10.0: 89
Number of HSP's gapped: 84705
Number of HSP's successfully gapped: 154
Length of query: 557
Length of database: 1,061,185,681
Length adjustment: 134
Effective length of query: 423
Effective length of database: 623,213,649
Effective search space: 263619373527
Effective search space used: 263619373527
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.45  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.56  mip: 0.07
 nuc: 0.07  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for Contig-U03598-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0