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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03591-1
Contig ID Contig-U03591-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03591-1 (Contig-U03591-1Q) /CSM_Contig/Contig-U03591-1Q.Seq.d
ATTCAAATGATGATAATGATATAGAATTAAATGATGGTGGTGGTGATTAT
TATGAAGATGATGATAGTTTATTTGAAAATAATAAGAAATCTACAACAAG
TAGAGGAGTAAAGAATTCAAAAAATTATTTAGCAGATGATCAAATTAGGT
ATATGCAATTAAATCATAATGTTGTAAATCATAAAACCAATTTCAATTAT
AAAGAGATATTATCAAAGAATAGTCATTTAAATTCTATTTCAACAGATAT
TGAAGATATTAAACATTCTGATAAAACAAATATTTTAATTTCAATTTCAA
AATCAATTGATGCTATTAAATATTCTTCAGATTATACTGATTTATCAAAA
ATGCCTGACATTGTTAAAAAAGTAGTTAGTGAAATGCCATTAGATAATAA
TGATAACGATAATGATGGTATAGGTTTAGCTTATGATGATTCACCAAGAG
ATTATGGTTATGATAGATATGAACCATTTACAACTTCCACTACTACAACA
GCAATAGGGACTTCAATACCAACTACTGCAACTACTTCAACCACTATTAA
CTCTACTTCATATTCAACAAGTACAAGT
Gap no gap
Contig length 578
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4097146
End point 4097724
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03591
List of clone(s) 

est1=SFG592F,1,579
Translated Amino Acid sequence 
SNDDNDIELNDGGGDYYEDDDSLFENNKKSTTSRGVKNSKNYLADDQIRYMQLNHNVVNH
KTNFNYKEILSKNSHLNSISTDIEDIKHSDKTNILISISKSIDAIKYSSDYTDLSKMPDI
VKKVVSEMPLDNNDNDNDGIGLAYDDSPRDYGYDRYEPFTTSTTTTAIGTSIPTTATTST
TINSTSYSTSTS
Translated Amino Acid sequence (All Frames) 
Frame A:
iqmmimi*n*mmvvviimkmmivylkiirnlqqvee*riqkii*qmiklgicn*iiml*i
ikpisiikryyqrivi*ilfqqilkilnilikqif*fqfqnqlmllnilqiiliyqkclt
llkk*lvkch*iimitimmv*v*lmmihqeimvmidmnhlqlpllqqq*glqyqllqllq
plltllhiqqvq


Frame B:
fk****yrik*www*ll*r***fi*k**eiynk*rskefkklfsr*sn*vyaiks*ccks
*nqfql*rdiike*sfkfyfnry*ry*tf**nkyfnfnfkin*cy*iffrly*fikna*h
c*kss**nair****r**wyrfsl**ftkrlwl**i*tiynfhyynsnrdfntnycnyfn
hy*lyfifnkyk


Frame C:
SNDDNDIELNDGGGDYYEDDDSLFENNKKSTTSRGVKNSKNYLADDQIRYMQLNHNVVNH
KTNFNYKEILSKNSHLNSISTDIEDIKHSDKTNILISISKSIDAIKYSSDYTDLSKMPDI
VKKVVSEMPLDNNDNDNDGIGLAYDDSPRDYGYDRYEPFTTSTTTTAIGTSIPTTATTST
TINSTSYSTSTS
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03591-1 (Contig-U03591-1Q)
/CSM_Contig/Contig-U03591-1Q.Seq.d
         (578 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03591-1 (Contig-U03591-1Q) /CSM_Contig/Conti...  1146  0.0
Contig-U13889-1 (Contig-U13889-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U09374-1 (Contig-U09374-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11299-1 (Contig-U11299-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11252-1 (Contig-U11252-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09499-1 (Contig-U09499-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U06953-1 (Contig-U06953-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01598-1 (Contig-U01598-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01337-1 (Contig-U01337-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    36  0.040

>Contig-U03591-1 (Contig-U03591-1Q) /CSM_Contig/Contig-U03591-1Q.Seq.d
          Length = 578

 Score = 1146 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaaatgatgataatgatatagaattaaatgatggtggtggtgattattatgaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attcaaatgatgataatgatatagaattaaatgatggtggtggtgattattatgaagatg 60

                                                                       
Query: 61  atgatagtttatttgaaaataataagaaatctacaacaagtagaggagtaaagaattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atgatagtttatttgaaaataataagaaatctacaacaagtagaggagtaaagaattcaa 120

                                                                       
Query: 121 aaaattatttagcagatgatcaaattaggtatatgcaattaaatcataatgttgtaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaattatttagcagatgatcaaattaggtatatgcaattaaatcataatgttgtaaatc 180

                                                                       
Query: 181 ataaaaccaatttcaattataaagagatattatcaaagaatagtcatttaaattctattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaaaccaatttcaattataaagagatattatcaaagaatagtcatttaaattctattt 240

                                                                       
Query: 241 caacagatattgaagatattaaacattctgataaaacaaatattttaatttcaatttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caacagatattgaagatattaaacattctgataaaacaaatattttaatttcaatttcaa 300

                                                                       
Query: 301 aatcaattgatgctattaaatattcttcagattatactgatttatcaaaaatgcctgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatcaattgatgctattaaatattcttcagattatactgatttatcaaaaatgcctgaca 360

                                                                       
Query: 361 ttgttaaaaaagtagttagtgaaatgccattagataataatgataacgataatgatggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgttaaaaaagtagttagtgaaatgccattagataataatgataacgataatgatggta 420

                                                                       
Query: 421 taggtttagcttatgatgattcaccaagagattatggttatgatagatatgaaccattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taggtttagcttatgatgattcaccaagagattatggttatgatagatatgaaccattta 480

                                                                       
Query: 481 caacttccactactacaacagcaatagggacttcaataccaactactgcaactacttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caacttccactactacaacagcaatagggacttcaataccaactactgcaactacttcaa 540

                                                 
Query: 541 ccactattaactctacttcatattcaacaagtacaagt 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccactattaactctacttcatattcaacaagtacaagt 578


>Contig-U13889-1 (Contig-U13889-1Q) /CSM_Contig/Contig-U13889-1Q.Seq.d
          Length = 612

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 393 gataataatgataacgataatgatg 417
           ||||||||| |||||||||||||||
Sbjct: 573 gataataataataacgataatgatg 597


>Contig-U09374-1 (Contig-U09374-1Q) /CSM_Contig/Contig-U09374-1Q.Seq.d
          Length = 1095

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 393 gataataatgataacgataatgat 416
           |||||||||||||| |||||||||
Sbjct: 408 gataataatgataatgataatgat 431


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 186 accaatttcaatta 199
           ||||||||||||||
Sbjct: 218 accaatttcaatta 205


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,452
Number of Sequences: 6905
Number of extensions: 15452
Number of successful extensions: 2242
Number of sequences better than 10.0: 729
length of query: 578
length of database: 5,674,871
effective HSP length: 16
effective length of query: 562
effective length of database: 5,564,391
effective search space: 3127187742
effective search space used: 3127187742
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6. 3
Homology vs DNA 
Query= Contig-U03591-1 (Contig-U03591-1Q) /CSM_Contig/Contig-U03591-1Q.Seq.d
         (578 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...  1015   0.0    1
(BJ391049) Dictyostelium discoideum cDNA clone:dds14g23, 5' ...  1015   0.0    1
(BX004821) Zebrafish DNA sequence from clone CH211-171A11 in...    42   3e-04  2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    40   0.014  7
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.043  15
(AC177731) Strongylocentrotus purpuratus clone R3-1008K3, WO...    40   0.063  3
(AC178396) Strongylocentrotus purpuratus clone R3-3110L19, W...    50   0.095  1
(AC178040) Strongylocentrotus purpuratus clone R3-3055P11, W...    50   0.095  1
(AC099600) Mus musculus chromosome 15, clone RP23-236P20, co...    44   0.098  4
(AC176980) Strongylocentrotus purpuratus clone R3-1103C23, W...    38   0.18   4
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    34   0.23   6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.31   10
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         40   0.32   7
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.33   15
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    34   0.34   13
(AC202259) Ornithorhynchus anatinus clone OA_Bb-326J5, WORKI...    48   0.37   1
(AC180581) Strongylocentrotus purpuratus clone R3-3094B20, W...    48   0.37   1
(DY542531) HPO-N-S01-0503-LF Hematopoietic cDNA library Pena...    48   0.37   1
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    40   0.41   8
(AC157584) Mus musculus chromosome 15, clone RP24-304L10, co...    44   0.51   4
(U44405) Spiroplasma citri chromosome pre-inversion border, ...    38   0.52   2
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.64   11
(AM603895) Entamoeba invadens IP1 GSS, clone inv029e10.q1k.        30   0.64   3
(AM611673) Entamoeba invadens IP1 GSS, clone inv009a07.p1k.        30   0.72   3
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.73   10
(AC179916) Strongylocentrotus purpuratus clone R3-1003E11, W...    32   0.77   2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.86   10
(AC008200) Drosophila melanogaster clone BACR17P04, complete...    46   1.3    3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    30   1.4    13
(CU302251) Zebrafish DNA sequence from clone CH1073-301I20 i...    46   1.5    1
(BX469904) Zebrafish DNA sequence from clone RP71-85J19 in l...    46   1.5    1
(AC187533) Callithrix jacchus BAC clone CH259-75H12 from chr...    46   1.5    1
(AC182351) Ateles geoffroyi clone UC1-76C3, complete sequence.     46   1.5    1
(CQ605033) Sequence 32791 from Patent WO0171042.                   46   1.5    1
(Z98547) Plasmodium falciparum MAL3P3.                             46   1.5    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    46   1.5    1
(AC103580) Trypanosoma brucei chromosome 4 clone RPCI93-5E12...    46   1.5    1
(AC008365) Drosophila melanogaster clone BACR03N12, complete...    46   1.5    1
(AC141753) Apis mellifera clone CH224-60D23, WORKING DRAFT S...    46   1.5    1
(AC129793) Rattus norvegicus clone CH230-313F9, *** SEQUENCI...    46   1.5    1
(AC114142) Rattus norvegicus clone CH230-140C23, *** SEQUENC...    46   1.5    1
(AC216404) Solanum lycopersicum chromosome 9 clone C09SLm010...    46   1.5    1
(AC201732) Spermophilus tridecemlineatus clone VMRC20-308L6,...    46   1.5    1
(AC198848) Spermophilus tridecemlineatus clone VMRC20-427J9,...    46   1.5    1
(AC177208) Strongylocentrotus purpuratus clone R3-1034O03, W...    46   1.5    1
(AC177088) Strongylocentrotus purpuratus clone R3-4005F07, W...    46   1.5    1
(AC168641) Strongylocentrotus purpuratus clone R3-3017O8, WO...    46   1.5    1
(AC020018) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   1.5    1
(AZ220686) Sheared DNA-105E9.TR Sheared DNA Trypanosoma bruc...    46   1.5    1
(AQ941019) Sheared DNA-40H17.TF Sheared DNA Trypanosoma bruc...    46   1.5    1
(AQ649577) Sheared DNA-30L4.TR Sheared DNA Trypanosoma bruce...    46   1.5    1
(FH074440) CHO_OF3030xl19f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.5    1
(FH021477) CHO_OF814xh03r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.5    1
(EJ819479) 1093017531108 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ712258) 1092956083605 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ705788) 1092956052621 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ275335) 1095366017967 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.5    1
(EJ224085) 1092351335065 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.5    1
(DE855038) Macropus eugenii DNA, BAC clone: MEB1-019J06_R, 3...    46   1.5    1
(AM831069) Nicotiana tabacum EST, clone nt005010014.               46   1.5    1
(AM786385) Nicotiana tabacum EST, clone nt005252017.               46   1.5    1
(GE411530) 294484443 Nasonia vitripennis Adult Male Nasonia ...    46   1.5    1
(GE377394) 292322175 Nasonia vitripennis Male Pupae Nasonia ...    46   1.5    1
(FK907931) EST_lsal_evj_938196 lsalevj mixed_tissue_mixed_st...    46   1.5    1
(FK907930) EST_lsal_evj_935124 lsalevj mixed_tissue_mixed_st...    46   1.5    1
(FK905221) EST_lsal_evj_950189 lsalevj mixed_tissue_mixed_st...    46   1.5    1
(FK905220) EST_lsal_evj_945581 lsalevj mixed_tissue_mixed_st...    46   1.5    1
(EY677839) CS00-C1-401-040-C12-CT.F Sweet orange leaf, infec...    46   1.5    1
(EX944068) lk26a02.g7 Gnetum female cone (NYBG) Gnetum gnemo...    46   1.5    1
(AC179011) Strongylocentrotus purpuratus clone R3-32I13, WOR...    40   1.7    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1.8    12
(AM422018) Candidatus Phytoplasma australiense complete genome.    34   1.8    10
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   1.8    9
(BX927385) Zebrafish DNA sequence from clone DKEY-76P7 in li...    38   1.9    6
(AC147950) Papio anubis clone RP41-263L16, WORKING DRAFT SEQ...    34   2.0    7
(AC158893) Bos taurus clone CH240-3P12, WORKING DRAFT SEQUEN...    40   2.0    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   2.0    9
(EC818081) SME00003001 esmbsro2 Sawyeria marylandensis cDNA,...    38   2.1    2
(AL592283) Mouse DNA sequence from clone RP23-386C23 on chro...    40   2.2    4
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    36   2.2    6
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   2.4    8
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   2.5    11
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   2.6    11
(BX842690) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   2.7    6
(AC124314) Mus musculus chromosome 10, clone RP23-193B6, com...    32   2.8    2
(AC103670) Mus musculus clone RP24-283M24, WORKING DRAFT SEQ...    32   2.9    2
(EK308574) 1095462388916 Global-Ocean-Sampling_GS-31-01-01-1...    32   2.9    3
(CR628401) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   2.9    2
(BX511008) Zebrafish DNA sequence from clone DKEY-109I21 in ...    32   3.0    2
(CR545478) Zebrafish DNA sequence from clone DKEY-124A17 in ...    32   3.1    2
(CT493396) A BAC library has been constructed from cultivar ...    32   3.5    3
(BH130459) ENTOU78TF Entamoeba histolytica Sheared DNA Entam...    32   3.8    2
(BH131450) ENTOW36TF Entamoeba histolytica Sheared DNA Entam...    32   3.8    2
(AL049482) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    40   4.1    5
(AC145194) Didelphis virginiana clone LB3-310C23, WORKING DR...    36   4.2    3
(AC176643) Strongylocentrotus purpuratus clone R3-3080M10, W...    42   4.7    4
(AC178075) Strongylocentrotus purpuratus clone R3-3059L02, W...    42   4.7    4
(AX602196) Sequence 125 from Patent WO02092818.                    42   4.8    3
(AC127463) Ornithorhynchus anatinus clone OA_Bb-27L6, WORKIN...    44   4.9    2
(BX538350) Cryptosporidium parvum chromosome 6, complete seq...    40   5.5    7
(AC190005) Nomascus leucogenys leucogenys clone CH271-110O2,...    36   5.7    3
(FB571360) Sequence 227 from Patent EP1865317.                     32   5.7    9
(FB571304) Sequence 171 from Patent EP1865317.                     32   5.7    9
(BX470068) Zebrafish DNA sequence from clone CH211-219C8 in ...    44   5.8    1
(AC147616) Mus musculus BAC clone RP23-433L22 from 8, comple...    44   5.8    1
(AC139846) Mus musculus BAC clone RP23-385F3 from 8, complet...    44   5.8    1
(CR382137) Debaryomyces hansenii strain CBS767 chromosome E ...    44   5.8    1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.8    1
(AC213428) Populus trichocarpa clone POP094-E14, complete se...    44   5.8    1
(AC189193) Brassica rapa subsp. pekinensis clone KBrB003A10,...    44   5.8    1
(AC184093) Populus trichocarpa clone Pop1-65E3, complete seq...    44   5.8    1
(AC137001) Oryza sativa Japonica Group chromosome 5 clone OS...    44   5.8    1
(AC108498) Oryza sativa Japonica Group chromosome 5 clone OJ...    44   5.8    1
(EA687112) Sequence 65991 from patent US 7365185.                  44   5.8    1
(AC154109) Ornithorhynchus anatinus chromosome UNK clone OAB...    44   5.8    1
(AC127464) Ornithorhynchus anatinus clone OA_Bb-383O11, comp...    44   5.8    1
(AC165428) Strongylocentrotus purpuratus BAC clone contig co...    44   5.8    1
(AC026745) Homo sapiens chromosome 5 clone RP11-245L6, compl...    44   5.8    1
(CU928647) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU855753) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(CU695260) Brassica rapa subsp. pekinensis clone KBrB041I17,...    44   5.8    1
(AC068734) Homo sapiens chromosome 12 clone RP11-485M4 map 1...    44   5.8    1
(AC068523) Homo sapiens chromosome 18 clone RP11-620B7 map 1...    44   5.8    1
(CU019665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.8    1
(CT757468) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    1
(BX510958) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.8    1
(AP005230) Homo sapiens genomic DNA, chromosome 18p, clone:R...    44   5.8    1
(AC202499) Medicago truncatula clone mth2-33c14, WORKING DRA...    44   5.8    1
(AC181086) Strongylocentrotus purpuratus clone R3-3049G13, W...    44   5.8    1
(AC179143) Strongylocentrotus purpuratus clone R3-4012D23, W...    44   5.8    1
(AC178882) Strongylocentrotus purpuratus clone R3-27H2, WORK...    44   5.8    1
(AC178287) Strongylocentrotus purpuratus clone R3-3094H08, W...    44   5.8    1
(AC022129) Homo sapiens chromosome 5 clone CTD-2183B18, WORK...    44   5.8    1
(BH403227) AG-ND-125O12.TR ND-TAM Anopheles gambiae genomic ...    44   5.8    1
(FI089816) CHO_OF8218xb23r1.ab1 CHO_OF8 Nicotiana tabacum ge...    44   5.8    1
(EK393621) 1095469510703 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK329099) 1095467016833 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EK320008) 1095462425918 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.8    1
(EJ985994) 1093023011340 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ945322) 1093018910664 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.8    1
(EJ452950) 1093015453952 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.8    1
(EJ325563) 1092963381703 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.8    1
(EJ136906) 1092343610503 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.8    1
(EJ093160) 1095460221396 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.8    1
(ED711659) GM_WBb0059C15.f GM_WBb Glycine max genomic clone ...    44   5.8    1
(ED081203) AUAC-aac94b07.b1 Ascaris suum whole genome shotgu...    44   5.8    1
(DU829422) KBrS004N22F KBrS, Brassica rapa Sau3AI BAC librar...    44   5.8    1
(DE396843) Bombyx mori genomic DNA, BAC clone:18A5H.               44   5.8    1
(DE383872) Bombyx mori genomic DNA, BAC clone:5L8G.                44   5.8    1
(CZ860744) OC__Ba0253P10.r OC__Ba Oryza coarctata genomic cl...    44   5.8    1
(CZ517124) GMW2-59C15a.b2 GMW2 Glycine max genomic, genomic ...    44   5.8    1
(CC753244) ZMMBBb0135B22.f ZMMBBb Zea mays subsp. mays genom...    44   5.8    1
(BH676069) BOMFT42TF BO_2_3_KB Brassica oleracea genomic clo...    44   5.8    1
(BH606926) BOGUK12TR BOGU Brassica oleracea genomic clone BO...    44   5.8    1
(EH244826) JGI_ACAC17661.rev ACAC Phakopsora pachyrhizi TW72...    44   5.8    1
(EH227579) JGI_ACAC4247.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.8    1
(EH227448) JGI_ACAC4539.rev ACAC Phakopsora pachyrhizi TW72-...    44   5.8    1
(EB608598) AGENCOURT_54968681 D. mojavensis EST Drosophila m...    44   5.8    1
(DY895708) CeleSEQ15599 Cunninghamella elegans pBluescript (...    44   5.8    1
(DY895604) CeleSEQ15473 Cunninghamella elegans pBluescript (...    44   5.8    1
(DN312613) PL06013A2F06 cDNA from juvenile hermaphodites Sch...    44   5.8    1
(CK570976) est_l_vannamei804 gCdWt Litopenaeus vannamei cDNA...    44   5.8    1
(CK194347) FGAS002772 Triticum aestivum FGAS: Library 3 Gate...    44   5.8    1
(C93865) Dictyostelium discoideum slug cDNA, clone SSL806.         44   5.8    1
(C91377) Dictyostelium discoideum slug cDNA, clone SSK143.         44   5.8    1
(BJ402771) Dictyostelium discoideum cDNA clone:dds18a11, 3' ...    44   5.8    1
(BJ402131) Dictyostelium discoideum cDNA clone:dds20h14, 3' ...    44   5.8    1
(BJ353074) Dictyostelium discoideum cDNA clone:dda48k24, 3' ...    44   5.8    1
(BJ345563) Dictyostelium discoideum cDNA clone:dda28h01, 3' ...    44   5.8    1
(BI511505) BB160006A10E03.5 Bee Brain Normalized Library, BB...    44   5.8    1
(GE454914) 294594000 Nasonia vitripennis Adult Female Nasoni...    44   5.8    1
(GE412396) 294488313 Nasonia vitripennis Adult Male Nasonia ...    44   5.8    1
(FE089798) LV_GL_RA39I09f Litopenaeus vannamei gills cDNA li...    44   5.8    1
(FE089797) LV_GL_RA39G09r Litopenaeus vannamei gills cDNA li...    44   5.8    1
(EY925953) RS1D089JQ RS1(AR) Raphanus sativus var. oleiformi...    44   5.8    1
(EY368974) CAXA12108.rev CAXA Helobdella robusta Subtracted ...    44   5.8    1
(EV027589) BNSCS2CT_UP_161_F06_27APR2007_038 Brassica napus ...    44   5.8    1
(ES610994) MTGland-A002_2007-02-01_1/MTG-A002_C06_022_1 Medi...    44   5.8    1
(CP001185) Thermosipho africanus TCF52B, complete genome.          44   5.8    1
(CP000853) Alkaliphilus oremlandii OhILAs, complete genome.        44   5.8    1
(AF288038) Streptococcus thermophilus putative oxidoreductas...    44   5.8    1
(AF039715) Caenorhabditis elegans cosmid R06A10, complete se...    40   5.9    2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   5.9    13
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    34   6.0    7
(AL749540) Human chromosome 14 DNA sequence Partial sequence...    40   6.0    3
(CZ521770) GMW2-81L12a.g1 GMW2 Glycine max genomic, genomic ...    28   6.2    4
(CU694755) Zebrafish DNA sequence from clone CH1073-458H17 i...    40   6.2    2
(EV435496) 35239_587 Quinqueloculina sp. cDNA library Quinqu...    34   6.2    2
(AY944336) Drosophila orena rhino (rhi) gene, complete cds.        38   6.2    2
(AC200944) Strongylocentrotus purpuratus clone R3-1037D10, W...    36   6.4    4
(CR769769) Zebrafish DNA sequence from clone CH211-190H11 in...    38   6.4    2
(AC142190) Rattus norvegicus clone CH230-418E14, WORKING DRA...    38   6.6    6
(AM456063) Vitis vinifera, whole genome shotgun sequence, co...    38   6.8    2
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    32   7.0    6
(FB744715) Sequence 38 from Patent WO2008011620.                   38   7.1    5
(FB332198) Sequence 5 from Patent WO2007115213.                    38   7.1    5
(CS448321) Sequence 5 from Patent WO2006117381.                    38   7.1    5
(GM987241) Sequence 5 from Patent EP2009115.                       38   7.1    5
(GM841734) Sequence 57 from Patent WO2008122447.                   38   7.1    5
(AL161635) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   7.2    7
(FB676003) Sequence 6 from Patent WO2007118704.                    38   7.3    5
(AC180469) Strongylocentrotus purpuratus clone R3-3011A15, W...    38   7.4    4
(EF647612) Solanum lycopersicum chromosome 9 clone C09SLm001...    40   7.4    3
(AU060613) Dictyostelium discoideum slug cDNA, clone SLK637.       36   7.8    2
(AC184386) Strongylocentrotus purpuratus clone R3-3100J21, W...    34   8.0    5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    40   8.0    7
(AC176804) Strongylocentrotus purpuratus clone R3-3109C4, WO...    36   8.2    3
(EC823437) SME00009987 esmbsro2 Sawyeria marylandensis cDNA,...    38   8.6    2
(AC181958) Strongylocentrotus purpuratus clone R3-1003P19, W...    34   8.6    5
(BH667491) BOHVN27TF BO_2_3_KB Brassica oleracea genomic clo...    34   8.6    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   9.0    7
(AG301138) Mus musculus molossinus DNA, clone:MSMg01-080D24....    34   9.1    2
(AC217698) Solanum tuberosum chromosome 1 clone RH050N11, **...    34   9.1    4
(EJ424973) 1093012259725 Global-Ocean-Sampling_GS-28-01-01-1...    38   9.3    2
(FC589757) CAXP5667.fwd CAXP Lottia gigantea from head, foot...    34   9.4    3
(BX248100) Zebrafish DNA sequence from clone CH211-222O11 in...    40   9.4    4
(EH533889) FDR107-P00067-DEPE-R_A14 FDR107 Danio rerio cDNA ...    40   9.7    2
(AC095182) Rattus norvegicus clone CH230-9D1, *** SEQUENCING...    38   9.9    3
(AC178475) Strongylocentrotus purpuratus clone R3-3039B24, W...    38   10.0   6

>(AC117070) Dictyostelium discoideum chromosome 2 map 2097701-2233941
              strain AX4, complete sequence.
          Length = 136240

 Score = 1015 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Minus


Query: 67     gtttatttgaaaataataagaaatctacaacaagtagaggagtaaagaattcaaaaaatt 126
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128398 gtttatttgaaaataataagaaatctacaacaagtagaggagtaaagaattcaaaaaatt 128339


Query: 127    atttagcagatgatcaaattaggtatatgcaattaaatcataatgttgtaaatcataaaa 186
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128338 atttagcagatgatcaaattaggtatatgcaattaaatcataatgttgtaaatcataaaa 128279


Query: 187    ccaatttcaattataaagagatattatcaaagaatagtcatttaaattctatttcaacag 246
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128278 ccaatttcaattataaagagatattatcaaagaatagtcatttaaattctatttcaacag 128219


Query: 247    atattgaagatattaaacattctgataaaacaaatattttaatttcaatttcaaaatcaa 306
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128218 atattgaagatattaaacattctgataaaacaaatattttaatttcaatttcaaaatcaa 128159


Query: 307    ttgatgctattaaatattcttcagattatactgatttatcaaaaatgcctgacattgtta 366
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128158 ttgatgctattaaatattcttcagattatactgatttatcaaaaatgcctgacattgtta 128099


Query: 367    aaaaagtagttagtgaaatgccattagataataatgataacgataatgatggtataggtt 426
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128098 aaaaagtagttagtgaaatgccattagataataatgataacgataatgatggtataggtt 128039


Query: 427    tagcttatgatgattcaccaagagattatggttatgatagatatgaaccatttacaactt 486
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128038 tagcttatgatgattcaccaagagattatggttatgatagatatgaaccatttacaactt 127979


Query: 487    ccactactacaacagcaatagggacttcaataccaactactgcaactacttcaaccacta 546
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127978 ccactactacaacagcaatagggacttcaataccaactactgcaactacttcaaccacta 127919


Query: 547    ttaactctacttcatattcaacaagtacaagt 578
              ||||||||||||||||||||||||||||||||
Sbjct: 127918 ttaactctacttcatattcaacaagtacaagt 127887

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 742,652,726
Number of extensions: 48185322
Number of successful extensions: 4297264
Number of sequences better than 10.0: 221
Length of query: 578
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 555
Effective length of database: 99,442,330,388
Effective search space: 55190493365340
Effective search space used: 55190493365340
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03591-1 (Contig-U03591-1Q) /CSM_Contig/Contig-U03591-1Q.Seq.d
         (578 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN317226_1(FN317226|pid:none) Schistosoma japonicum isolate Anhu...    38   0.17
AP008935_4(AP008935|pid:none) Staphylococcus saprophyticus subsp...    38   0.23
CP000679_1339(CP000679|pid:none) Caldicellulosiruptor saccharoly...    37   0.29
CP000685_4401(CP000685|pid:none) Flavobacterium johnsoniae UW101...    37   0.29
AY386371_69(AY386371|pid:none) Yaba monkey tumor virus, complete...    37   0.38
AL844505_133(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.38
Z75666_1(Z75666|pid:none) C.aethiops BRCA2 gene, exon 11.              37   0.38
AY436640_1(AY436640|pid:none) Homo sapiens breast cancer 2, earl...    36   0.66
AL137247_1(AL137247|pid:none) Human DNA sequence from clone RP11...    36   0.66
DQ897648_1(DQ897648|pid:none) Homo sapiens breast and ovarian ca...    36   0.66
AY888182_1(AY888182|pid:none) Synthetic construct Homo sapiens c...    36   0.66
A62786_1(A62786|pid:none) Sequence 27 from Patent WO9719110.           36   0.66
(Q06VD6) RecName: Full=Leucine-rich repeat structural protein OR...    36   0.66
(P51587) RecName: Full=Breast cancer type 2 susceptibility prote...    36   0.66
AY890753_1(AY890753|pid:none) Synthetic construct Homo sapiens c...    36   0.66
CP000095_2059(CP000095|pid:none) Prochlorococcus marinus str. NA...    35   1.1
AL844506_32(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.1
AL844506_148(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.5
AL844506_176(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.5
AE014187_149(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.5
AM427820_4(AM427820|pid:none) Vitis vinifera contig VV78X055578....    35   1.9
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.9
AL844506_218(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.9
AF539547_1(AF539547|pid:none) Pan troglodytes breast cancer 2 (B...    35   1.9
AL844505_44(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.9
CP000678_548(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    35   1.9
CP001072_1129(CP001072|pid:none) Helicobacter pylori Shi470, com...    34   2.5
AE016815_18(AE016815|pid:none) Ashbya gossypii (= Eremothecium g...    34   2.5
AL844504_221(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.5
AL844509_88(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   2.5
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    34   2.5
AC117072_19(AC117072|pid:none) Dictyostelium discoideum chromoso...    34   2.5
AE014188_70(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    34   2.5
EU489821_2(EU489821|pid:none) Francisella philomiragia subsp. ph...    34   3.3
AL844507_122(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.3
CP001357_2580(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    34   3.3
EU490715_1(EU490715|pid:none) Aerangis citrata hypothetical prot...    34   3.3
AL844505_156(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.3
AL844509_222(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.3
AE014187_412(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.3
AF063866_204(AF063866|pid:none) Melanoplus sanguinipes entomopox...    33   4.2
AE014188_107(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
CR382399_67(CR382399|pid:none) Plasmodium falciparum chromosome ...    33   4.2
EF420156_80(EF420156|pid:none) Tanapox virus isolate TPV-Kenya, ...    33   4.2
AL844509_281(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AP009608_542(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    33   4.2
AC116963_31(AC116963|pid:none) Dictyostelium discoideum chromoso...    33   4.2
AL034559_1(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp...    33   4.2
AE014187_459(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AL844508_64(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.2
AL844505_152(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AE014188_221(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.2
AE014186_399(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
CR382134_309(CR382134|pid:none) Debaryomyces hansenii strain CBS...    33   5.5
AE014187_478(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
AF063866_118(AF063866|pid:none) Melanoplus sanguinipes entomopox...    33   5.5
(Q54M23) RecName: Full=Putative uncharacterized protein DDB_G028...    33   5.5
AL031745_55(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   5.5
CR382125_562(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    33   5.5
CP000937_1378(CP000937|pid:none) Francisella philomiragia subsp....    33   5.5
AE014186_421(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.5
AL844506_80(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    33   7.2
A71623(A71623) probable secreted protein PFB0115w - malaria para...    33   7.2
CP000487_1186(CP000487|pid:none) Campylobacter fetus subsp. fetu...    33   7.2
AE014185_77(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    33   7.2
T23912(T23912) hypothetical protein R05A10.2 - Caenorhabditis el...    33   7.2
CR940352_791(CR940352|pid:none) Theileria annulata strain Ankara...    33   7.2
AL844509_49(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    32   9.5
(Q8IDG7) RecName: Full=Uncharacterized protein PF13_0277;  &AL84...    32   9.5
AL844504_151(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
DQ088855_12(DQ088855|pid:none) Uncultured bacterium eBACmed18B02...    32   9.5
AE014185_330(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
BA000028_1700(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    32   9.5
AL929352_69(AL929352|pid:none) Plasmodium falciparum strain 3D7,...    32   9.5
AE014187_264(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
AE014187_720(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.5
CP001083_788(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    32   9.5
CP001078_977(CP001078|pid:none) Clostridium botulinum E3 str. Al...    32   9.5

>FN317226_1(FN317226|pid:none) Schistosoma japonicum isolate Anhui
           full length mRNA clone SJFCE0818|FSE_087_66_B09,
           complete sequence.
          Length = 484

 Score = 38.1 bits (87), Expect = 0.17
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 78  NNKKSTTSRGVKNSKNYLADDQIRYMQLNHNVVNHKTN-FNYKEILSKNSHLNSISTDIE 254
           +N K + +  + N  ++  D+Q+ Y     N  NH  N +N + +LS+N++ NS+
Sbjct: 149 DNSKDSENYSLLNQIDWTLDEQM-YRNQEGNYNNHNDNIYNMEYVLSRNNNFNSLFNRTN 207

Query: 255 DIKHSDKTNI 284
            IKH D   I
Sbjct: 208 KIKHEDHNTI 217

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 428,776,099
Number of extensions: 6607434
Number of successful extensions: 21699
Number of sequences better than 10.0: 79
Number of HSP's gapped: 21283
Number of HSP's successfully gapped: 79
Length of query: 192
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 70
Effective length of database: 662,435,025
Effective search space: 46370451750
Effective search space used: 46370451750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for Contig-U03591-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0