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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03539-1
Contig ID Contig-U03539-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Contig-U03539-1Q.Seq.d
GTTTGGATTCTACTACAAAACTCATCAAAAAAAAAGATACAAATGGCTGA
TGATAAAAAAAGAGAATTAGAGGAAACTTCTACCACCACTGAAGAAACCT
CAACAGAAGATAATCATACAAAAAAGAAATTAAAAGTTGATCCAACTCCT
TCAGTAGAAGACAATAATAACAAAACTACAGAAAATAAAGAAACAGAAGA
AAATAAAGAACCAACAACTACTACCACCACTACTGAAGAAAAGAAAGAAG
AGAAAAAAGAAGAAGAAAATAAAGAAACAACAACAACTACTACTGATGAA
AAAAAAGATGATAAAAAAGAAGGTGTAGAAGAAGAAAAGAAAGAAGAAGA
AAAAAAACCAACTTCAATTTTTGGTTCAGGTTCATCAATTTTTGGTTCAG
GTTTCCCATCAACTGGATTTGGATCAGCATCAAATACATTTTTCATTCAA
TTTAAATAGCACATCCTCATTTTCATTTGGATTTAATAAATCATCAACTG
ATTCATCTTCCAATACTACAGGAACTAGCTTATTTGGAAATAATAACAAT
AATAATAATAATAATAATAATAATACTAAAAACGATGATAGCGAAAAATC
TGAAAGTTCAGTTTCAAATAATGGTTGTGATGAATCTGATAATACCACAT
TCGAACCAATCATTCAAGCTCAAGAAGTTGAGTTAAAAACTGGTGAAGAA
GATGAAACTACTTTATGTTCTACTAAAGGTAAATTATATATTTTACAAGA
TAAACAATATAAAGAAAGAGGTGTTGGTACAATTAGAGTTAATAAAGATT
TAGAAGAAAAGTCTAGAATAATTATGAATGCTGATGGTTCAAAGAAAAAT
ATTTTAAATGTAAACATTTTCCCAAAAATGAAAGTAACCTCACCAAATGA
AAAAACTTTAACATTCATTGCATTTGAAGATGATAAAATTTGCACTTTTG
TTTTAATTGCAAAACCAGAAGAAATTAAAAACTTTTCAACTGTTATAAAT
AAACAAATCAGTAGCCTCGAAGTAGCTTAAAATTTTATTTTAAAAAAAAA
AAA
Gap no gap
Contig length 1053
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 590882
End point 591936
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 6
Link to clone list U03539
List of clone(s) 

est1=VFE453E,1,1035
est2=SSK843F,14,248
est3=VSB874Z,432,1050
est4=SSK843Z,567,1042
est5=SSB322Z,662,1054
est6=SFF168Z,761,916
Translated Amino Acid sequence 
fgfyykthqkkrykwlmikken*rkllpplkkpqqkiiiqkrn*kliqllq*ktiitklq
kikkqkkiknqqllppllkkrkkrkkkkkikkqqqlllmkkkmikkkv*KKKRKKKKKNQ
LQFLVQVHQFLVQVSHQLDLDQHQIHFSFNLNSTSSFSFGFNKSSTDSSSNTTGTSLFGN
NNNNNNNNNNNTKNDDSEKSESSVSNNGCDESDNTTFEPIIQAQEVELKTGEEDETTLCS
TKGKLYILQDKQYKERGVGTIRVNKDLEEKSRIIMNADGSKKNILNVNIFPKMKVTSPNE
KTLTFIAFEDDKICTFVLIAKPEEIKNFSTVINKQISSLEVA*nfilkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vwillqnsskkkiqmaddkkreleetsttteetstednhtkkklkvdptpsvednnnktt
enketeenkepttttttteekkeekkeeenkettttttdekkddkkegveeekkeeekkp
tsifgsgssifgsgfpstgfgsasntffiqfk*hilifiwi**iin*fifqyyrn*liwk
**q********y*kr**rki*kfsfk*wl**i**yhirtnhsssrs*vknw*rr*nyfmf
y*r*iiyftr*ti*rkrcwyn*s**rfrrkv*nnyec*wfkekyfkckhfpknesnltk*
knfnihci*r**nlhfcfncktrrn*klfncyk*tnq*prsslkfyfkkkk


Frame B:
fgfyykthqkkrykwlmikken*rkllpplkkpqqkiiiqkrn*kliqllq*ktiitklq
kikkqkkiknqqllppllkkrkkrkkkkkikkqqqlllmkkkmikkkv*KKKRKKKKKNQ
LQFLVQVHQFLVQVSHQLDLDQHQIHFSFNLNSTSSFSFGFNKSSTDSSSNTTGTSLFGN
NNNNNNNNNNNTKNDDSEKSESSVSNNGCDESDNTTFEPIIQAQEVELKTGEEDETTLCS
TKGKLYILQDKQYKERGVGTIRVNKDLEEKSRIIMNADGSKKNILNVNIFPKMKVTSPNE
KTLTFIAFEDDKICTFVLIAKPEEIKNFSTVINKQISSLEVA*nfilkkk


Frame C:
ldsttklikkkdtng***kkrirgnfyhh*rnlnrr*sykkeiks*snsfsrrq**qnyr
k*rnrrk*rtnnyyhhy*rkerrekrrrk*rnnnnyy**kkr**krrcrrrkerrrkktn
fnfwfrfinfwfrfpinwiwisikyifhsi*iahphfhldlinhqlihlpilqelaylei
itiiiiiiiiilktmiaknlkvqfqimvvmnliiphsnqsfklkkls*klvkkmkllyvl
lkvnyifykinnikkevlvqleliki*kksle*l*mlmvqrkif*m*tfsqk*k*phqmk
kl*hslhlkmikfallf*lqnqkklktfqll*inksvask*lkilf*kkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03539-1 (Contig-U03539-1Q)
/CSM_Contig/Contig-U03539-1Q.Seq.d
         (1053 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Conti...   924  0.0
Contig-U13527-1 (Contig-U13527-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11488-1 (Contig-U11488-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U04455-1 (Contig-U04455-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U06374-1 (Contig-U06374-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    36  0.074

>Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Contig-U03539-1Q.Seq.d
          Length = 1053

 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Plus

                                                                        
Query: 576  ctaaaaacgatgatagcgaaaaatctgaaagttcagtttcaaataatggttgtgatgaat 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  ctaaaaacgatgatagcgaaaaatctgaaagttcagtttcaaataatggttgtgatgaat 635

                                                                        
Query: 636  ctgataataccacattcgaaccaatcattcaagctcaagaagttgagttaaaaactggtg 695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  ctgataataccacattcgaaccaatcattcaagctcaagaagttgagttaaaaactggtg 695

                                                                        
Query: 696  aagaagatgaaactactttatgttctactaaaggtaaattatatattttacaagataaac 755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696  aagaagatgaaactactttatgttctactaaaggtaaattatatattttacaagataaac 755

                                                                        
Query: 756  aatataaagaaagaggtgttggtacaattagagttaataaagatttagaagaaaagtcta 815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756  aatataaagaaagaggtgttggtacaattagagttaataaagatttagaagaaaagtcta 815

                                                                        
Query: 816  gaataattatgaatgctgatggttcaaagaaaaatattttaaatgtaaacattttcccaa 875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816  gaataattatgaatgctgatggttcaaagaaaaatattttaaatgtaaacattttcccaa 875

                                                                        
Query: 876  aaatgaaagtaacctcaccaaatgaaaaaactttaacattcattgcatttgaagatgata 935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876  aaatgaaagtaacctcaccaaatgaaaaaactttaacattcattgcatttgaagatgata 935

                                                                        
Query: 936  aaatttgcacttttgttttaattgcaaaaccagaagaaattaaaaacttttcaactgtta 995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936  aaatttgcacttttgttttaattgcaaaaccagaagaaattaaaaacttttcaactgtta 995

                                                          
Query: 996  taaataaacaaatcagtagcctcgaagtagcttaaaattttatttt 1041
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996  taaataaacaaatcagtagcctcgaagtagcttaaaattttatttt 1041


 Score =  369 bits (186), Expect = e-102
 Identities = 218/234 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttggattctactacaaaactcatcnnnnnnnnngatacaaatggctgatgatnnnnnn 60
           ||||||||||||||||||||||||||         |||||||||||||||||||      
Sbjct: 1   gtttggattctactacaaaactcatcaaaaaaaaagatacaaatggctgatgataaaaaa 60

                                                                       
Query: 61  ngagaattagaggaaacttctaccaccactgaagaaacctcaacagaagataatcataca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agagaattagaggaaacttctaccaccactgaagaaacctcaacagaagataatcataca 120

                                                                       
Query: 121 aaaaagaaattaaaagttgatccaactccttcagtagaagacaataataacaaaactaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaagaaattaaaagttgatccaactccttcagtagaagacaataataacaaaactaca 180

                                                                 
Query: 181 gaaaataaagaaacagaagaaaataaagaaccaacaactactaccaccactact 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaaataaagaaacagaagaaaataaagaaccaacaactactaccaccactact 234


 Score =  359 bits (181), Expect = 4e-99
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 358 ccaacttcaatttttggttcaggttcatcaatttttggttcaggtttcccatcaactgga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccaacttcaatttttggttcaggttcatcaatttttggttcaggtttcccatcaactgga 417

                                                                       
Query: 418 tttggatcagcatcaaatacatttttcattcaatttaaatagcacatcctcattttcatt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttggatcagcatcaaatacatttttcattcaatttaaatagcacatcctcattttcatt 477

                                                                       
Query: 478 tggatttaataaatcatcaactgattcatcttccaatactacaggaactagcttatttgg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tggatttaataaatcatcaactgattcatcttccaatactacaggaactagcttatttgg 537

            
Query: 538 a 538
           |
Sbjct: 538 a 538


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 195 agaagaaaataaagaaccaacaactactac 224
           |||||||||||||||| ||||||| |||||
Sbjct: 261 agaagaaaataaagaaacaacaacaactac 290


 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 278 caacaacaactactactg 295
           ||||||||||||||||||
Sbjct: 278 caacaacaactactactg 295


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 180 agaaaataaagaaaca 195
           ||||||||||||||||
Sbjct: 264 agaaaataaagaaaca 279


>Contig-U13527-1 (Contig-U13527-1Q) /CSM_Contig/Contig-U13527-1Q.Seq.d
          Length = 762

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 212 caacaactactaccaccactact 234
           |||||||||||||||||||||||
Sbjct: 503 caacaactactaccaccactact 525


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 278 caacaacaactactac 293
           ||||||||||||||||
Sbjct: 500 caacaacaactactac 515


>Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Contig-U11807-1Q.Seq.d
          Length = 1224

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 212 caacaactactaccaccacta 232
           |||||||||||||||||||||
Sbjct: 909 caacaactactaccaccacta 929


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 278 caacaacaactactac 293
           ||||||||||||||||
Sbjct: 906 caacaacaactactac 921


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,547
Number of Sequences: 6905
Number of extensions: 19547
Number of successful extensions: 2754
Number of sequences better than 10.0: 367
length of query: 1053
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1037
effective length of database: 5,564,391
effective search space: 5770273467
effective search space used: 5770273467
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6. 3
Homology vs DNA 
Query= Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Contig-U03539-1Q.Seq.d
         (1053 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ431026) Dictyostelium discoideum cDNA clone:ddv9j14, 3' e...   533   0.0    4
(AU262310) Dictyostelium discoideum vegetative cDNA clone:VS...   533   0.0    3
(C94329) Dictyostelium discoideum slug cDNA, clone SSK843.        533   0.0    2
(C84214) Dictyostelium discoideum slug cDNA, clone SSB322.        343   e-163  2
(BJ412722) Dictyostelium discoideum cDNA clone:ddv9j14, 5' e...   186   e-113  5
(AU074476) Dictyostelium discoideum slug cDNA, clone SSK843.      186   5e-48  3
(BJ398233) Dictyostelium discoideum cDNA clone:dds11g17, 3' ...   135   4e-27  1
(ER530005) 1093015742229 Global-Ocean-Sampling_GS-35-01-01-1...    40   0.17   2
(EJ767219) 1092963308627 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.21   2
(AC098280) Rattus norvegicus clone CH230-1J2, *** SEQUENCING...    42   0.22   4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.22   14
(AC129406) Rattus norvegicus clone CH230-507M10, *** SEQUENC...    40   0.31   7
(EJ622154) 1092963088855 Global-Ocean-Sampling_GS-29-01-01-1...    36   0.50   2
(EJ072274) 1095458093886 Global-Ocean-Sampling_GS-26-01-01-1...    38   0.80   2
(AC098247) Rattus norvegicus clone CH230-1E6, *** SEQUENCING...    36   0.81   4
(AC106064) Rattus norvegicus clone CH230-157P22, *** SEQUENC...    40   0.82   4
(AC141962) Rattus norvegicus clone CH230-422J24, WORKING DRA...    36   0.86   4
(AC174803) Bos taurus clone CH240-242D16, WORKING DRAFT SEQU...    38   0.96   5
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   1.2    12
(AC111471) Rattus norvegicus clone CH230-79F18, *** SEQUENCI...    36   1.3    5
(AC121476) Rattus norvegicus clone CH230-96L20, *** SEQUENCI...    36   1.4    7
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   1.6    8
(AB377268) Alstroemeria aurea AaglsA gene for gonidia formin...    36   1.7    2
(AA550677) 1914m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    38   1.8    2
(EY036281) CAIY2632.rev CAIY Artemisia annua leaf Artemisia ...    38   2.0    2
(AG281142) Mus musculus molossinus DNA, clone:MSMg01-052L16....    36   2.1    2
(EF420157) Tanapox virus isolate TPV-RoC, complete genome.         40   2.1    10
(EF420156) Tanapox virus isolate TPV-Kenya, complete genome.       40   2.1    10
(CT010579) Mouse DNA sequence from clone RP23-397K12 on chro...    36   2.2    6
(AC107577) Rattus norvegicus clone CH230-336L8, WORKING DRAF...    40   2.3    4
(AC094351) Rattus norvegicus clone CH230-3C8, *** SEQUENCING...    36   2.3    9
(EY036282) CAIY2632.fwd CAIY Artemisia annua leaf Artemisia ...    38   2.5    2
(AM426844) Vitis vinifera contig VV78X115678.10, whole genom...    44   2.7    2
(AC134092) Rattus norvegicus clone CH230-260G8, *** SEQUENCI...    46   2.7    1
(AC098260) Rattus norvegicus clone CH230-1L9, *** SEQUENCING...    46   2.7    1
(FP103021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(AC091757) Sus scrofa clone RP44-206B19, WORKING DRAFT SEQUE...    46   2.7    1
(AC221716) Bos taurus clone CH240-388D2, WORKING DRAFT SEQUE...    46   2.7    1
(AC170139) Bos taurus clone CH240-215P2, WORKING DRAFT SEQUE...    46   2.7    1
(FF845783) EST_tthy_evl_884730 tthy_evl Thymallus thymallus ...    46   2.7    1
(CP000937) Francisella philomiragia subsp. philomiragia ATCC...    46   2.7    1
(BX908798) Parachlamydia-related symbiont UWE25, complete ge...    46   2.7    1
(AC136260) Rattus norvegicus clone CH230-408C22, *** SEQUENC...    36   2.8    5
(AC112103) Rattus norvegicus clone CH230-236A15, WORKING DRA...    42   2.8    4
(AC103002) Rattus norvegicus clone CH230-184K22, *** SEQUENC...    38   3.0    7
(AC118487) Rattus norvegicus 2 BAC CH230-285C2 (Children's H...    36   3.0    8
(AC137191) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    36   3.1    4
(AC094239) Rattus norvegicus clone CH230-3C4, *** SEQUENCING...    36   3.3    4
(AC096134) Rattus norvegicus clone CH230-11E3, *** SEQUENCIN...    40   3.4    5
(AC127095) Rattus norvegicus clone CH230-75F6, *** SEQUENCIN...    36   3.9    8
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        36   4.5    15
(AC096812) Rattus norvegicus clone CH230-72L4, *** SEQUENCIN...    36   4.5    6
(AC106077) Rattus norvegicus clone CH230-104N16, *** SEQUENC...    36   4.6    6
(AC010341) Homo sapiens chromosome 5 clone CTD-2010O7, WORKI...    38   4.8    4
(AM642391) Entamoeba dispar GSS, clone dispar93c11.q1k.            38   4.8    3
(AC118966) Rattus norvegicus clone CH230-482N23, *** SEQUENC...    36   5.0    6
(AC123309) Rattus norvegicus clone CH230-101K10, *** SEQUENC...    34   5.1    2
(AC127982) Rattus norvegicus clone CH230-419M11, *** SEQUENC...    34   5.2    2
(AM627394) Entamoeba dispar GSS, clone dispar21g05.q1k.            38   5.3    3
(AC129385) Rattus norvegicus clone CH230-26I5, *** SEQUENCIN...    36   5.5    7
(AC110972) Rattus norvegicus clone CH230-71J5, WORKING DRAFT...    36   5.6    5
(AC106189) Rattus norvegicus clone CH230-7K6, *** SEQUENCING...    36   5.8    8
(AC110973) Rattus norvegicus clone CH230-111K9, WORKING DRAF...    36   5.9    5
(AC116275) Rattus norvegicus clone CH230-377H16, *** SEQUENC...    36   6.2    6
(AC114703) Rattus norvegicus clone CH230-125E17, *** SEQUENC...    36   6.2    6
(AC196189) Solanum lycopersicum chromosome 5 clone C05HBa007...    38   6.7    5
(ED994558) MUGQ_CH252P165A18T7_CN203_079 CHORI-252 Vervet Mo...    34   6.9    2
(AM348098) Oryzias latipes EST, clone FOE002-P00002-DPE-R_K13.     32   6.9    2
(AC008586) Homo sapiens chromosome 5 clone CTC-568N24, compl...    40   7.0    4
(AC114352) Rattus norvegicus clone CH230-263P9, *** SEQUENCI...    36   7.9    4
(AC120490) Rattus norvegicus clone CH230-118N9, *** SEQUENCI...    38   8.2    4
(AC116254) Rattus norvegicus clone CH230-32J11, *** SEQUENCI...    36   8.2    7
(AC095930) Rattus norvegicus clone CH230-10K15, WORKING DRAF...    36   8.3    7
(AC152871) Medicago truncatula clone mth2-83e5, complete seq...    38   8.7    5
(AM481059) Vitis vinifera contig VV78X111237.9, whole genome...    36   8.8    3
(AC172952) Bos taurus clone CH240-275L11, *** SEQUENCING IN ...    36   8.9    4
(FC811175) Sr_pASP6_06l20_SP6 S. ratti mixed stage pAMP Stro...    42   9.0    2
(EJ854169) 1093017908530 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.0    2
(AC139384) Rattus norvegicus clone CH230-221L21, WORKING DRA...    36   9.1    5
(AC112292) Rattus norvegicus clone CH230-225J14, *** SEQUENC...    36   9.3    4
(EJ835565) 1093017626329 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.6    2
(AC129461) Rattus norvegicus clone CH230-7J13, WORKING DRAFT...    38   9.6    4
(ER346030) 1092345133901 Global-Ocean-Sampling_GS-34-01-01-1...    40   9.6    2
(EJ854761) 1093017911421 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.7    2
(ER455740) 1092963868312 Global-Ocean-Sampling_GS-35-01-01-1...    40   9.8    2
(AC098603) Rattus norvegicus clone CH230-139E21, WORKING DRA...    36   9.9    5
(FC816662) Sr_pAMT7_06l20_T7 S. ratti mixed stage pAMP Stron...    42   9.9    2

>(BJ431026) Dictyostelium discoideum cDNA clone:ddv9j14, 3' end,
           single read.
          Length = 633

 Score =  533 bits (269), Expect(4) = 0.0
 Identities = 269/269 (100%)
 Strand = Plus / Minus


Query: 576 ctaaaaacgatgatagcgaaaaatctgaaagttcagtttcaaataatggttgtgatgaat 635
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctaaaaacgatgatagcgaaaaatctgaaagttcagtttcaaataatggttgtgatgaat 401


Query: 636 ctgataataccacattcgaaccaatcattcaagctcaagaagttgagttaaaaactggtg 695
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgataataccacattcgaaccaatcattcaagctcaagaagttgagttaaaaactggtg 341


Query: 696 aagaagatgaaactactttatgttctactaaaggtaaattatatattttacaagataaac 755
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aagaagatgaaactactttatgttctactaaaggtaaattatatattttacaagataaac 281


Query: 756 aatataaagaaagaggtgttggtacaattagagttaataaagatttagaagaaaagtcta 815
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aatataaagaaagaggtgttggtacaattagagttaataaagatttagaagaaaagtcta 221


Query: 816 gaataattatgaatgctgatggttcaaag 844
           |||||||||||||||||||||||||||||
Sbjct: 220 gaataattatgaatgctgatggttcaaag 192

 Score =  258 bits (130), Expect(4) = 0.0
 Identities = 130/130 (100%)
 Strand = Plus / Minus


Query: 906  ctttaacattcattgcatttgaagatgataaaatttgcacttttgttttaattgcaaaac 965
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  ctttaacattcattgcatttgaagatgataaaatttgcacttttgttttaattgcaaaac 71


Query: 966  cagaagaaattaaaaacttttcaactgttataaataaacaaatcagtagcctcgaagtag 1025
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70   cagaagaaattaaaaacttttcaactgttataaataaacaaatcagtagcctcgaagtag 11


Query: 1026 cttaaaattt 1035
            ||||||||||
Sbjct: 10   cttaaaattt 1

 Score =  196 bits (99), Expect(4) = 0.0
 Identities = 99/99 (100%)
 Strand = Plus / Minus


Query: 440 ttttcattcaatttaaatagcacatcctcattttcatttggatttaataaatcatcaact 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttttcattcaatttaaatagcacatcctcattttcatttggatttaataaatcatcaact 537


Query: 500 gattcatcttccaatactacaggaactagcttatttgga 538
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gattcatcttccaatactacaggaactagcttatttgga 498

 Score = 81.8 bits (41), Expect(4) = 0.0
 Identities = 41/41 (100%)
 Strand = Plus / Minus


Query: 402 tttcccatcaactggatttggatcagcatcaaatacatttt 442
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tttcccatcaactggatttggatcagcatcaaatacatttt 593

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,107,025,038
Number of extensions: 72418488
Number of successful extensions: 6448107
Number of sequences better than 10.0: 89
Length of query: 1053
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1029
Effective length of database: 99,340,224,878
Effective search space: 102221091399462
Effective search space used: 102221091399462
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Contig-U03539-1Q.Seq.d
         (1053 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB099485_1(AB099485|pid:none) Mizuhopecten yessoensis canbp75 mR...    75   5e-12
AM438365_2(AM438365|pid:none) Vitis vinifera contig VV78X052512....    70   1e-10
AY140094_1(AY140094|pid:none) Arabidopsis thaliana unknown prote...    66   2e-09
CR382123_343(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    63   2e-08
CR382128_591(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    62   3e-08
AM270002_4(AM270002|pid:none) Aspergillus niger contig An02c0070...    62   3e-08
BC055272_1(BC055272|pid:none) Danio rerio zgc:63485, mRNA (cDNA ...    61   8e-08
AB012247_1(AB012247|pid:none) Arabidopsis thaliana genomic DNA, ...    61   8e-08
CR380959_548(CR380959|pid:none) Candida glabrata strain CBS138 c...    61   8e-08
BC059200_1(BC059200|pid:none) Danio rerio zgc:66385, mRNA (cDNA ...    61   8e-08
CP001331_109(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    60   1e-07
AY084443_1(AY084443|pid:none) Arabidopsis thaliana clone 108414 ...    60   1e-07
CU928171_694(CU928171|pid:none) Kluyveromyces thermotolerans str...    60   1e-07
AP007166_286(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    60   1e-07
BC157559_1(BC157559|pid:none) Xenopus tropicalis RAN binding pro...    60   1e-07
EF147922_1(EF147922|pid:none) Populus trichocarpa clone WS0126_A...    60   2e-07
AC135464_4(AC135464|pid:none) Medicago truncatula clone mth2-17k...    59   3e-07
EF085180_1(EF085180|pid:none) Picea sitchensis clone WS0293_E15 ...    59   3e-07
T22974(T22974) hypothetical protein F59A2.1 - Caenorhabditis ele...    59   3e-07
AP008211_903(AP008211|pid:none) Oryza sativa (japonica cultivar-...    59   3e-07
BT050644_1(BT050644|pid:none) Medicago truncatula clone MTYFT1G-...    59   3e-07
AM920436_734(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    59   4e-07
AK069970_1(AK069970|pid:none) Oryza sativa Japonica Group cDNA c...    58   5e-07
AY095055_1(AY095055|pid:none) Drosophila melanogaster LD43045 fu...    58   5e-07
L41840_1(L41840|pid:none) Homo sapiens nucleoporin (NUP358) gene...    58   6e-07
(P49792) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...    58   6e-07
D42063_1(D42063|pid:none) Human mRNA for RanBP2 (Ran-binding pro...    58   6e-07
(P92985) RecName: Full=Ran-binding protein 1 homolog c;  &BT0249...    58   6e-07
(P41920) RecName: Full=Ran-specific GTPase-activating protein 1;...    57   8e-07
CR380949_173(CR380949|pid:none) Candida glabrata strain CBS138 c...    57   8e-07
BT073504_1(BT073504|pid:none) Oncorhynchus mykiss clone omyk-evn...    57   8e-07
BT079783_1(BT079783|pid:none) Esox lucius clone eluc-evq-510-202...    57   8e-07
S57968(S57968) Ran-binding protein 2 - mouse (fragment)  &X87337...    57   1e-06
BT057557_1(BT057557|pid:none) Salmo salar clone ssal-evf-519-251...    57   1e-06
(Q9ERU9) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...    57   1e-06
BT082295_1(BT082295|pid:none) Anoplopoma fimbria clone afim-evh-...    57   1e-06
(Q09717) RecName: Full=Ran-specific GTPase-activating protein 1;...    57   1e-06
FM992692_325(FM992692|pid:none) Candida dubliniensis CD36 chromo...    57   1e-06
EF144391_1(EF144391|pid:none) Populus trichocarpa clone PX0019_D...    57   1e-06
BC061426_1(BC061426|pid:none) Xenopus tropicalis RAN binding pro...    57   1e-06
CP001328_280(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    56   2e-06
CU928165_184(CU928165|pid:none) Kluyveromyces thermotolerans str...    56   2e-06
EU016516_1(EU016516|pid:none) Nicotiana benthamiana Ran binding ...    56   2e-06
(Q09146) Brefeldin A resistance protein (Caffeine resistance pro...    56   2e-06
AB027850_1(AB027850|pid:none) Schizosaccharomyces pombe gene for...    56   2e-06
L25255_1(L25255|pid:none) Mus musculus Ran/TC4 binding protein (...    55   3e-06
(Q54KD9) RecName: Full=Ran-specific GTPase-activating protein ho...    55   3e-06
(P32499) RecName: Full=Nucleoporin NUP2; AltName: Full=Nuclear p...    55   3e-06
U19240_1(U19240|pid:none) Human Ran binding protein mRNA, partia...    55   3e-06
EU961269_1(EU961269|pid:none) Zea mays clone 234140 ran-binding ...    55   3e-06
AM158921_1(AM158921|pid:none) Xenopus laevis mRNA for ran bindin...    55   4e-06
X56045_1(X56045|pid:none) Mouse mRNA (clone lambda-19) for hypot...    55   4e-06
AK153074_1(AK153074|pid:none) Mus musculus bone marrow macrophag...    55   4e-06
BC133801_1(BC133801|pid:none) Xenopus laevis Ran binding protein...    55   4e-06
AF015303_1(AF015303|pid:none) Xenopus laevis small GTPase Ran bi...    55   4e-06
BC071062_1(BC071062|pid:none) Xenopus laevis Ran binding protein...    55   4e-06
(P34022) RecName: Full=Ran-specific GTPase-activating protein; A...    55   4e-06
X97378_1(X97378|pid:none) A.thaliana mRNA for AtRanBP1b protein.       55   5e-06
(Q4R4T9) RecName: Full=Ran-binding protein 3;          Short=Ran...    54   7e-06
AL050149_1(AL050149|pid:none) Homo sapiens mRNA; cDNA DKFZp586I1...    54   7e-06
Y08697_1(Y08697|pid:none) H.sapiens mRNA for RanBP3 small splice...    54   7e-06
(Q5R4Y2) RecName: Full=Ran-binding protein 3;          Short=Ran...    54   7e-06
AK314343_1(AK314343|pid:none) Homo sapiens cDNA, FLJ95105, highl...    54   7e-06
AB171271_1(AB171271|pid:none) Macaca fascicularis brain cDNA clo...    54   7e-06
DQ234346_1(DQ234346|pid:none) Homo sapiens RAN binding protein 3...    54   7e-06
Y08698_1(Y08698|pid:none) H.sapiens mRNA for RanBP3 (59 kDa).          54   7e-06
AK299260_1(AK299260|pid:none) Homo sapiens cDNA FLJ55542 complet...    54   7e-06
AK301942_1(AK301942|pid:none) Homo sapiens cDNA FLJ58549 complet...    54   7e-06
D76431_1(D76431|pid:none) Schizosaccharomyces pombe mRNA for ran...    54   9e-06
AE017350_230(AE017350|pid:none) Cryptococcus neoformans var. neo...    54   9e-06
S40475(S40475)Ran-specific GTPase-activating protein - human           54   9e-06
AK222990_1(AK222990|pid:none) Homo sapiens mRNA for RAN binding ...    54   9e-06
AY093099_1(AY093099|pid:none) Arabidopsis thaliana Ran binding p...    54   9e-06
(Q9LMK7) RecName: Full=Ran-binding protein 1 homolog a; AltName:...    54   1e-05
EU961612_1(EU961612|pid:none) Zea mays clone 237001 ran-binding ...    54   1e-05
EU967178_1(EU967178|pid:none) Zea mays clone 300042 ran-binding ...    54   1e-05
CU638712_2(CU638712|pid:none) Zebrafish DNA sequence from clone ...    53   2e-05
DQ296188_1(DQ296188|pid:none) Brassica rapa clone 25 unknown mRNA.     53   2e-05
(P48820) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...    53   2e-05
AF004136_1(AF004136|pid:none) Sus scrofa domestica Ran-binding p...    53   2e-05
BC067558_1(BC067558|pid:none) Danio rerio RAN binding protein 1,...    53   2e-05
AJ720596_1(AJ720596|pid:none) Gallus gallus mRNA for hypothetica...    53   2e-05
AK293502_1(AK293502|pid:none) Homo sapiens cDNA FLJ57507 complet...    53   2e-05
AF364085_1(AF364085|pid:none) Danio rerio Ran binding protein 1 ...    53   2e-05
D38076_1(D38076|pid:none) Homo sapiens RanBP1 mRNA for Ran-bindi...    53   2e-05
AY170822_1(AY170822|pid:none) Homo sapiens transformation-relate...    53   2e-05
BC071998_1(BC071998|pid:none) Homo sapiens cDNA clone MGC:88701 ...    53   2e-05
AY170823_1(AY170823|pid:none) Homo sapiens transformation-relate...    53   2e-05
(Q9CT10) RecName: Full=Ran-binding protein 3;          Short=Ran...    53   2e-05
AK302947_1(AK302947|pid:none) Homo sapiens cDNA FLJ61646 complet...    52   3e-05
AP007155_388(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    52   4e-05
BT042125_1(BT042125|pid:none) Zea mays full-length cDNA clone ZM...    52   4e-05
AE017341_61(AE017341|pid:none) Cryptococcus neoformans var. neof...    52   5e-05
EU971506_1(EU971506|pid:none) Zea mays clone 366367 ranBP1 domai...    52   5e-05
AK300352_1(AK300352|pid:none) Homo sapiens cDNA FLJ54456 complet...    51   6e-05
(P0C839) RecName: Full=RANBP2-like and GRIP domain-containing pr...    51   6e-05
PDBN(1RRP)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...    51   6e-05
(Q68DN6) RecName: Full=RANBP2-like and GRIP domain-containing pr...    51   6e-05
EU971545_1(EU971545|pid:none) Zea mays clone 366912 unknown mRNA.      51   6e-05
(Q7Z3J3) RecName: Full=RANBP2-like and GRIP domain-containing pr...    51   6e-05
AK303443_1(AK303443|pid:none) Homo sapiens cDNA FLJ58076 complet...    51   6e-05
BC172352_1(BC172352|pid:none) Synthetic construct Homo sapiens c...    51   6e-05
AB209082_1(AB209082|pid:none) Homo sapiens mRNA for RAN-binding ...    51   8e-05
(Q6PDH4) RecName: Full=Ran-binding protein 3-like;  &BC058706_1(...    50   1e-04
AK011541_1(AK011541|pid:none) Mus musculus 10 days embryo whole ...    50   1e-04
CR382122_250(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    50   1e-04
(A6NKT7) RecName: Full=RANBP2-like and GRIP domain-containing pr...    50   1e-04
CP000499_498(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    49   2e-04
AJ851427_1(AJ851427|pid:none) Gallus gallus mRNA for hypothetica...    49   2e-04
AK131738_1(AK131738|pid:none) Mus musculus adult male testis cDN...    49   2e-04
AF107840_1(AF107840|pid:none) Homo sapiens nuclear pore-associat...    49   3e-04
AL008718_2(AL008718|pid:none) Human DNA sequence from clone CTA-...    49   3e-04
(Q9UKX7) RecName: Full=Nucleoporin 50 kDa; AltName: Full=Nuclear...    49   3e-04
AK304223_1(AK304223|pid:none) Homo sapiens cDNA FLJ54237 complet...    49   3e-04
AK302921_1(AK302921|pid:none) Homo sapiens cDNA FLJ59078 complet...    49   3e-04
AK133371_1(AK133371|pid:none) Mus musculus adult male testis cDN...    49   3e-04
CR382138_339(CR382138|pid:none) Debaryomyces hansenii strain CBS...    49   4e-04
CR954210_217(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    49   4e-04
AF049868_1(AF049868|pid:none) Candida albicans Yrb1p (YRB1) gene...    48   5e-04
CU638712_3(CU638712|pid:none) Zebrafish DNA sequence from clone ...    48   5e-04
CU928171_757(CU928171|pid:none) Kluyveromyces thermotolerans str...    48   7e-04
FM992689_500(FM992689|pid:none) Candida dubliniensis CD36 chromo...    48   7e-04
JQ1973(JQ1973)HTF9-A protein - mouse                                   48   7e-04
FN357320_18(FN357320|pid:none) Schistosoma mansoni genome sequen...    47   9e-04
AJ420904_1(AJ420904|pid:none) Plasmodium falciparum mRNA for Ran...    47   9e-04
AB179101_1(AB179101|pid:none) Macaca fascicularis testis cDNA cl...    47   9e-04
AB168260_1(AB168260|pid:none) Macaca fascicularis testis cDNA cl...    47   9e-04
(Q9USL4) RecName: Full=Nucleoporin nup61; AltName: Full=Nuclear ...    47   0.001
CR382138_812(CR382138|pid:none) Debaryomyces hansenii strain CBS...    47   0.001
AE017341_199(AE017341|pid:none) Cryptococcus neoformans var. neo...    47   0.001
CR382131_450(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    47   0.001
CR760454_1(CR760454|pid:none) Xenopus tropicalis finished cDNA, ...    46   0.003
CU928173_512(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    46   0.003
BC141191_1(BC141191|pid:none) Mus musculus RIKEN cDNA 1700123L14...    45   0.004
AK300927_1(AK300927|pid:none) Homo sapiens cDNA FLJ54173 complet...    44   0.007
BC065637_1(BC065637|pid:none) Danio rerio nucleoporin 50, mRNA (...    42   0.036
AY398390_1(AY398390|pid:none) Danio rerio clone RK141A2G07 nucle...    42   0.036
AY814530_1(AY814530|pid:none) Schistosoma japonicum SJCHGC09028 ...    41   0.062
AL008718_3(AL008718|pid:none) Human DNA sequence from clone CTA-...    39   0.24
AM042542_1(AM042542|pid:none) Sordaria macrospora partial sbp ge...    39   0.24
CR940353_158(CR940353|pid:none) Theileria annulata strain Ankara...    37   0.90
AM270181_6(AM270181|pid:none) Aspergillus niger contig An08c0260...    37   1.5
S01175(S01175)hypothetical protein A - mouse (fragment)                37   1.5
BC090603_1(BC090603|pid:none) Xenopus tropicalis nucleoporin 50k...    36   2.0
AJ422213_1(AJ422213|pid:none) Babesia divergens mRNA for ran bin...    35   4.4
AB027958_1(AB027958|pid:none) Schizosaccharomyces pombe gene for...    35   5.8
AM055942_30(AM055942|pid:none) Toxoplasma gondii RH, genomic DNA...    35   5.8
(Q5JPF3) RecName: Full=UPF0634 protein C; AltName: Full=Protein ...    34   9.9
AE014185_169(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.9
AM910994_29(AM910994|pid:none) Plasmodium knowlesi strain H chro...    34   9.9

>AB099485_1(AB099485|pid:none) Mizuhopecten yessoensis canbp75 mRNA
            for calcineurin-binding protein of 75 kDa, complete cds.
          Length = 474

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 8/126 (6%)
 Frame = +2

Query: 671  QEVELKTGEEDETTLCSTKGKLYIL--QDKQYKERGVGTIRVNK-----DLEEKSRIIMN 829
            +EVE+KTGEEDE+ +  + GKL++    ++ + ERG G +R+N        E +SR++M
Sbjct: 308  KEVEVKTGEEDESNVLQSTGKLFVFDGHNQSWIERGRGLLRINDQRSQVSSEFQSRLVMR 367

Query: 830  ADGSKKNILNVNIFPKMKVTSPNEKTLTFIAFE-DDKICTFVLIAKPEEIKNFSTVINKQ 1006
              GS + ILN  I+P M +   ++K+L   A + +D +  F++I  P++ +N    ++ +
Sbjct: 368  TQGSLRVILNTKIWPAMTIERASQKSLRITATDGEDGVRVFLIITSPKDCENILRAVDWR 427

Query: 1007 ISSLEV 1024
            I  L +
Sbjct: 428  IQQLRM 433

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 895,331,178
Number of extensions: 13349162
Number of successful extensions: 38364
Number of sequences better than 10.0: 150
Number of HSP's gapped: 38177
Number of HSP's successfully gapped: 179
Length of query: 351
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 222
Effective length of database: 639,555,889
Effective search space: 141981407358
Effective search space used: 141981407358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.80  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U03539-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0