| Contig-U03494-1 |
| Contig ID |
Contig-U03494-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
545 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1886744 |
| End point |
1886233 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U03494 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6. 1 |
| Homology vs DNA |
Query= Contig-U03494-1 (Contig-U03494-1Q) /CSM_Contig/Contig-U03494-1Q.Seq.d
(545 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ388160) Dictyostelium discoideum cDNA clone:dds8n06, 5' e... 781 0.0 2
(AC222429) Bos taurus clone CH240-417P5, WORKING DRAFT SEQUE... 54 0.006 1
(AC171094) Bos taurus clone CH240-227D22, WORKING DRAFT SEQU... 54 0.006 1
(AC123620) Mus musculus chromosome 12, clone RP23-53J21, com... 50 0.089 1
(AC120555) Mus musculus chromosome 12, clone RP24-311D18, co... 50 0.089 1
(AC188708) Gallus gallus BAC clone CH261-174G4 from chromoso... 48 0.35 1
(AC187570) Gallus gallus BAC clone CH261-189F16 from chromos... 48 0.35 1
(AL663104) Mouse DNA sequence from clone RP23-207H18 on chro... 48 0.35 1
(AC101247) Mus musculus clone RP23-98D1, LOW-PASS SEQUENCE S... 48 0.35 1
(CC318423) TAM32-29E16_Sp6.1 TAM32 Gallus gallus genomic clo... 48 0.35 1
(BB481384) Mus musculus 13 days embryo lung cDNA, RIKEN full... 48 0.35 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.43 10
(AP000489) Homo sapiens genomic DNA, chromosome 11q13 clone:... 42 0.47 4
(AC120522) Canis lupus familiaris clone RP81-417N7, WORKING ... 42 0.53 2
(BZ061344) lkx39g06.b1 B.oleracea002 Brassica oleracea genom... 42 0.65 2
(AE017263) Mesoplasma florum L1 complete genome. 34 0.85 11
(AC189531) Brassica rapa subsp. pekinensis clone KBrH001D10,... 42 0.86 5
(AC094874) Rattus norvegicus clone CH230-5N22, *** SEQUENCIN... 46 0.86 4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.89 12
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.94 9
(ET633067) tlec_c_498 Treponema lecithinolyticum OMZ 684 gen... 36 0.97 2
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 44 0.99 4
(AG321332) Mus musculus molossinus DNA, clone:MSMg01-107J22.... 40 1.3 2
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 34 1.4 14
(BX470234) Zebrafish DNA sequence from clone DKEY-94N12 in l... 46 1.4 1
(AC104742) Mus musculus chromosome 5, clone RP24-334A12, com... 46 1.4 1
(BS000094) Pan troglodytes chromosome 22 clone:PTB-240N13, m... 46 1.4 1
(GN007701) Sequence 142 from Patent EP2014669. 46 1.4 1
(AP001690) Homo sapiens genomic DNA, chromosome 21q, section... 46 1.4 1
(AP000469) Homo sapiens genomic DNA, chromosome 21q, clone:R... 46 1.4 1
(AC010978) Homo sapiens BAC clone RP11-363N21 from 2, comple... 46 1.4 1
(AC156842) Bos taurus clone CH240-64B24, WORKING DRAFT SEQUE... 46 1.4 1
(AC137389) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 1.4 1
(AC137388) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 1.4 1
(AC098215) Rattus norvegicus clone CH230-111K1, *** SEQUENCI... 46 1.4 1
(FP016131) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(FH020458) CHO_OF395xh17r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.4 1
(AQ057774) CIT-HSP-2344C8.TR CIT-HSP Homo sapiens genomic cl... 46 1.4 1
(DU116236) KBrH097D23F Brassica rapa BAC library KBrH Brassi... 46 1.4 1
(CT329531) Sus scrofa genomic clone CH242-353L21, genomic su... 46 1.4 1
(CT293348) Sus scrofa genomic clone CH242-340M16, genomic su... 46 1.4 1
(CL604349) CH240_180I02.TJ CHORI-240 Bos taurus genomic clon... 46 1.4 1
(EB592928) AGENCOURT_51786805 D. ananassae EST Drosophila an... 46 1.4 1
(EB586792) AGENCOURT_50936970 D. ananassae EST Drosophila an... 46 1.4 1
(EB575828) AGENCOURT_51779414 D. ananassae EST Drosophila an... 46 1.4 1
(AC134628) Rattus norvegicus clone CH230-47J23, *** SEQUENCI... 34 1.8 6
(AL605463) Fugu rubripes GSS sequence, clone B299C07eB1. 36 1.9 2
(BX210063) Danio rerio genomic clone DKEY-221D2, genomic sur... 32 2.0 3
(AC103206) Rattus norvegicus clone CH230-32H7, *** SEQUENCIN... 42 2.0 3
(BH542397) BOGUX87TF BOGU Brassica oleracea genomic clone BO... 42 2.1 2
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 34 2.1 7
(BH994383) oeg92d02.b1 B.oleracea002 Brassica oleracea genom... 42 2.2 2
(BH499676) BOHOR83TR BOHO Brassica oleracea genomic clone BO... 42 2.2 2
(AC131168) Rattus norvegicus clone CH230-19E8, WORKING DRAFT... 42 2.3 3
(AC225457) Medicago truncatula clone mth2-161g6, WORKING DRA... 36 2.3 4
(BA000008) Chlamydophila pneumoniae J138 genomic DNA, comple... 34 2.4 11
(FB318691) Sequence 1 from Patent EP1854885. 34 2.4 11
(DI004811) Chlamydia pneumoniae genomic sequence and polypep... 34 2.4 11
(AR935503) Sequence 1 from patent US 7101963. 34 2.4 11
(AR310754) Sequence 1 from patent US 6559294. 34 2.4 11
(AR607478) Sequence 1 from patent US 6822071. 34 2.4 11
(AE001363) Chlamydophila pneumoniae CWL029, complete genome. 34 2.4 11
(BH699584) BOHUX93TF BO_2_3_KB Brassica oleracea genomic clo... 42 2.5 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 2.8 16
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g... 32 3.0 4
(AL954358) Zebrafish DNA sequence from clone CH211-226D12. 42 3.1 5
(CL641234) CH213-7M20.T7 CH213 Gasterosteus aculeatus genomi... 34 3.6 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 30 3.7 9
(CE214552) tigr-gss-dog-17000372875967 Dog Library Canis lup... 34 3.7 2
(BI397272) kt23c11.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 34 3.7 2
(CR382135) Debaryomyces hansenii strain CBS767 chromosome C ... 40 3.7 12
(CT030255) Mouse DNA sequence from clone RP23-267P22 on chro... 40 4.0 6
(AC129308) Mus musculus BAC clone RP24-308E2 from chromosome... 42 4.5 3
(AC108206) Homo sapiens BAC clone RP11-203B7 from 4, complet... 36 4.8 5
(AL935293) Zebrafish DNA sequence from clone CH211-251D10 in... 40 5.1 4
(AC149287) Solanum demissum chromosome 5 clone PGEC568D21, c... 38 5.4 4
(CU499311) Zebrafish DNA sequence from clone CH211-251B21 in... 44 5.5 1
(AL844192) Zebrafish DNA sequence from clone DKEY-245I2 in l... 44 5.5 1
(BV316579) S236P6447FF4.T0 AlaskanMalamute Canis familiaris ... 44 5.5 1
(BV287276) S232P6225FC6.T0 Beagle Canis familiaris STS genom... 44 5.5 1
(AC160533) Mus musculus chromosome 5, clone RP24-242L17, com... 44 5.5 1
(AC140001) Mus musculus chromosome 5, clone RP24-276E6, comp... 44 5.5 1
(AB018114) Arabidopsis thaliana genomic DNA, chromosome 3, P... 44 5.5 1
(AC188638) Canis Familiaris chromosome 30, clone XX-205E13, ... 44 5.5 1
(AC026688) Homo sapiens chromosome 5 clone CTB-158E9, comple... 44 5.5 1
(AC153032) Bos taurus clone CH240-22E7, WORKING DRAFT SEQUEN... 44 5.5 1
(AC129159) Rattus norvegicus clone CH230-10O18, *** SEQUENCI... 44 5.5 1
(AC106758) Homo sapiens chromosome 5 clone RP11-206C13, WORK... 44 5.5 1
(AC106268) Rattus norvegicus clone CH230-220K9, *** SEQUENCI... 44 5.5 1
(AC102985) Rattus norvegicus clone CH230-155C17, *** SEQUENC... 44 5.5 1
(AC177065) Strongylocentrotus purpuratus clone R3-1038A15, W... 44 5.5 1
(AC022412) Homo sapiens chromosome 5 clone CTB-52B13, WORKIN... 44 5.5 1
(EJ966750) 1093022048649 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.5 1
(EJ956005) 1093018972932 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.5 1
(AL747455) Danio rerio genomic clone DKEY-6A4, genomic surve... 44 5.5 1
(DU702382) Bst034909 lambda03 Boechera stricta genomic clone... 44 5.5 1
(CR358355) Arabidopsis thaliana T-DNA flanking sequence GK-7... 44 5.5 1
(CC073206) CSU-K33r.33O22.SP6 CSU-K33r Aedes aegypti genomic... 44 5.5 1
(EL915371) INIT2_89_H11.g2_A006 G5 trophont cDNA (INIT2) Ich... 44 5.5 1
(EL914975) INIT2_85_A08.g1_A006 G5 trophont cDNA (INIT2) Ich... 44 5.5 1
(EL906606) INIT2_13_G02.b1_A006 G5 trophont cDNA (INIT2) Ich... 44 5.5 1
(EL906531) INIT2_12_F09.g1_A006 G5 trophont cDNA (INIT2) Ich... 44 5.5 1
(EB927863) 14698541 ZF31 Danio rerio cDNA clone 3272933, mRN... 44 5.5 1
(DN270176) LIB30321_042_B03_SP6_1 LIB30321 Canis lupus famil... 44 5.5 1
(BQ618268) faa59b07.x1 Gong zebrafish testis Danio rerio cDN... 44 5.5 1
(GD250876) HLUTR3CH_T3_028_C09_02APR2006_075 HLUTR3CH Humulu... 44 5.5 1
(FG651776) G1142P310RC18.T0 Anolis carolinensis pooled norma... 44 5.5 1
(FG651634) G1142P310FC18.T0 Anolis carolinensis pooled norma... 44 5.5 1
(EX518644) Hops-CTAB-31_2007-06-08/Hops-CTAB-31R_D01_005_1 H... 44 5.5 1
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome. 44 5.5 1
(AC189517) Brassica rapa subsp. pekinensis clone KBrB090J11,... 38 5.9 5
(AC092098) Homo sapiens BAC clone RP11-533K11 from 7, comple... 34 6.1 6
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 6.1 13
(AC180613) Strongylocentrotus purpuratus clone R3-3090N8, WO... 34 6.5 5
(EF661026) Carica papaya clone BAC PH53E18, complete sequence. 32 6.5 8
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 32 6.5 9
(AC131830) Rattus norvegicus clone CH230-292H17, WORKING DRA... 42 6.5 3
(AD000685) Homo sapiens DNA from chromosome 19p13.1 cosmids ... 40 7.8 2
(AP005178) Oryza sativa Japonica Group genomic DNA, chromoso... 36 7.9 4
(AC166744) Medicago truncatula chromosome 6 clone mth2-69h7,... 38 8.1 4
(EJ342566) 1092963526308 Global-Ocean-Sampling_GS-28-01-01-1... 30 8.2 3
(AP001258) Homo sapiens genomic DNA, chromosome 11q, clone:C... 42 8.3 3
(CV756148) sjl6-005_B12_sjl6-005B12-T3_101.ab1 SJL Schistoso... 38 8.3 2
(AC189265) Brassica rapa subsp. pekinensis clone KBrB022C05,... 42 8.5 3
(FP085435) Zebrafish DNA sequence from clone CH73-228D8 in l... 32 8.6 5
(AC166169) Mus musculus BAC clone RP23-193F7 from chromosome... 42 8.6 4
(CV746098) service_F12_sjl5-006F12-T3_103.ab1 SJL Schistosom... 38 8.7 2
(AM475053) Vitis vinifera contig VV78X103745.3, whole genome... 34 8.9 3
(CD836506) BN45.048P13F020104 BN45 Brassica napus cDNA clone... 34 8.9 2
(EJ980012) 1093022147334 Global-Ocean-Sampling_GS-30-02-01-1... 36 9.1 2
(EJ861352) 1093017980793 Global-Ocean-Sampling_GS-30-02-01-1... 36 9.3 2
(ET936049) CHO_OF465xb12r1.ab1 CHO_OF Nicotiana tabacum geno... 38 9.4 2
(AC212314) Solanum lycopersicum chromosome 11 clone C11HBa00... 30 9.9 2
>(BJ388160) Dictyostelium discoideum cDNA clone:dds8n06, 5' end,
single read.
Length = 546
Score = 781 bits (394), Expect(2) = 0.0
Identities = 394/394 (100%)
Strand = Plus / Plus
Query: 152 ttaagagaacaatgtaataatcaacataaacaagtgattttagaaaaaacaccatcatct 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ttaagagaacaatgtaataatcaacataaacaagtgattttagaaaaaacaccatcatct 211
Query: 212 gaaccaaatatactatcacccgacgatgaattatcattaatacattattatgaaactaaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaaccaaatatactatcacccgacgatgaattatcattaatacattattatgaaactaaa 271
Query: 272 acattagaaattgcaatggctttaaatttacctgataaagtatctgcaacagcaattata 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acattagaaattgcaatggctttaaatttacctgataaagtatctgcaacagcaattata 331
Query: 332 tatataaaaagattttatttaaagaatagtataatgcaatatggagcgaaattggtgatg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tatataaaaagattttatttaaagaatagtataatgcaatatggagcgaaattggtgatg 391
Query: 392 ttatcatgtttattcattgcatgtaaaacagaggataatcatttagatatcgattattat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttatcatgtttattcattgcatgtaaaacagaggataatcatttagatatcgattattat 451
Query: 452 agtaatattactaaagcatcaccatcagatattacaaatttagaaattatcattttagaa 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agtaatattactaaagcatcaccatcagatattacaaatttagaaattatcattttagaa 511
Query: 512 tcattaaatttcaatctaatagtttatcatccat 545
||||||||||||||||||||||||||||||||||
Sbjct: 512 tcattaaatttcaatctaatagtttatcatccat 545
Score = 44.1 bits (22), Expect(2) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 ggatgtttaataatgaaggatt 144
||||||||||||||||||||||
Sbjct: 123 ggatgtttaataatgaaggatt 144
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 630,081,709
Number of extensions: 39894028
Number of successful extensions: 3765987
Number of sequences better than 10.0: 134
Length of query: 545
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 522
Effective length of database: 99,442,330,388
Effective search space: 51908896462536
Effective search space used: 51908896462536
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.28 |
| Homology vs Protein |
Query= Contig-U03494-1 (Contig-U03494-1Q) /CSM_Contig/Contig-U03494-1Q.Seq.d
(545 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q55F19) RecName: Full=Putative cyclin-H; 305 4e-82
(Q61458) RecName: Full=Cyclin-H; &AF287135_1(AF287135|pid:none)... 103 3e-21
AK137849_1(AK137849|pid:none) Mus musculus 16 days neonate thymu... 103 3e-21
AY888147_1(AY888147|pid:none) Synthetic construct Homo sapiens c... 103 4e-21
(P51946) RecName: Full=Cyclin-H; AltName: Full=MO15-associated p... 103 4e-21
(Q9R1A0) RecName: Full=Cyclin-H; &BC059109_1(BC059109|pid:none) 102 5e-21
(Q3ZBL9) RecName: Full=Cyclin-H; &BC103224_1(BC103224|pid:none) 102 5e-21
AJ276495_1(AJ276495|pid:none) Rattus norvegicus mRNA for cyclin ... 101 1e-20
(P36613) RecName: Full=Cyclin mcs2; AltName: Full=Mitotic catast... 99 7e-20
AE017349_135(AE017349|pid:none) Cryptococcus neoformans var. neo... 97 2e-19
BC118698_1(BC118698|pid:none) Xenopus tropicalis cyclin H, mRNA ... 97 4e-19
CR382125_290(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 96 5e-19
AE016820_98(AE016820|pid:none) Ashbya gossypii (= Eremothecium g... 96 6e-19
FN392321_589(FN392321|pid:none) Pichia pastoris GS115 chromosome... 95 1e-18
(P37366) RecName: Full=Cyclin CCL1; &S39383(S39383;S54499) &X71... 95 1e-18
(P51947) RecName: Full=Cyclin-H; AltName: Full=MO15-associated p... 94 2e-18
BC106342_1(BC106342|pid:none) Xenopus laevis cyclin H, mRNA (cDN... 94 2e-18
AF092743_1(AF092743|pid:none) Populus tremula x Populus tremuloi... 94 2e-18
BT082969_1(BT082969|pid:none) Anoplopoma fimbria clone afim-evh-... 94 3e-18
AC118133_25(AC118133|pid:none) Oryza sativa chromosome 3 BAC OSJ... 93 5e-18
CU928167_235(CU928167|pid:none) Kluyveromyces thermotolerans str... 93 5e-18
(Q10D80) RecName: Full=Cyclin-H1-1; Short=CycH1;1; AltN... 93 5e-18
CU640366_905(CU640366|pid:none) Podospora anserina genomic DNA c... 92 1e-17
BC091559_1(BC091559|pid:none) Danio rerio cyclin H, mRNA (cDNA c... 90 3e-17
EU964899_1(EU964899|pid:none) Zea mays clone 282436 cyclin-H mRN... 90 3e-17
BX470189_2(BX470189|pid:none) Zebrafish DNA sequence from clone ... 90 3e-17
BT066009_1(BT066009|pid:none) Zea mays full-length cDNA clone ZM... 90 3e-17
AY691949_3(AY691949|pid:none) Zea mays alcohol dehydrogenase 1 (... 89 1e-16
CP000497_221(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 88 2e-16
AX885690_1(AX885690|pid:none) Sequence 1553 from Patent EP1033401. 82 9e-15
AC151426_8(AC151426|pid:none) Medicago truncatula clone mth2-6o2... 81 2e-14
AP007164_249(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 80 3e-14
AM920437_1476(AM920437|pid:none) Penicillium chrysogenum Wiscons... 79 6e-14
AB209342_1(AB209342|pid:none) Homo sapiens mRNA for cyclin H var... 77 4e-13
FJ548926_1(FJ548926|pid:none) Scylla serrata cyclin H mRNA, comp... 74 2e-12
CR940353_527(CR940353|pid:none) Theileria annulata strain Ankara... 72 9e-12
FN357707_16(FN357707|pid:none) Schistosoma mansoni genome sequen... 70 5e-11
AY880414_1(AY880414|pid:none) Gekko japonicus GekBS183P mRNA, co... 69 8e-11
(Q9GP34) RecName: Full=Probable cyclin-H; &AJ292374_1(AJ292374|... 68 1e-10
(A1C7R6) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 68 2e-10
AP007161_205(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 67 4e-10
(Q4WZT9) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 64 2e-09
(Q9FJK7) RecName: Full=Cyclin-C1-2; Short=CycC1;2; &AB... 64 3e-09
HB439817_1(HB439817|pid:none) Sequence 2635 from Patent WO200907... 63 4e-09
AB015468_11(AB015468|pid:none) Arabidopsis thaliana genomic DNA,... 63 6e-09
CU928173_81(CU928173|pid:none) Zygosaccharomyces rouxii strain C... 62 1e-08
(A4RD79) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 62 1e-08
FN392320_1126(FN392320|pid:none) Pichia pastoris GS115 chromosom... 61 2e-08
HB439819_1(HB439819|pid:none) Sequence 2637 from Patent WO200907... 60 5e-08
EF148044_1(EF148044|pid:none) Populus trichocarpa clone WS0127_A... 59 6e-08
(Q75AX7) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 59 1e-07
AE016817_194(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 59 1e-07
CU928171_438(CU928171|pid:none) Kluyveromyces thermotolerans str... 58 2e-07
(P47821) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 57 2e-07
BT051659_1(BT051659|pid:none) Medicago truncatula clone MTYF5_F6... 57 2e-07
AE017341_410(AE017341|pid:none) Cryptococcus neoformans var. neo... 57 2e-07
AK072415_2(AK072415|pid:none) Oryza sativa Japonica Group cDNA c... 57 3e-07
AF479593_1(AF479593|pid:none) Toxoplasma gondii cyclin H (CYC1) ... 56 7e-07
AL451012_14(AL451012|pid:none) Neurospora crassa DNA linkage gro... 55 9e-07
BC048886_1(BC048886|pid:none) Danio rerio zgc:55690, mRNA (cDNA ... 55 2e-06
(Q5A4H9) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 55 2e-06
BT036293_1(BT036293|pid:none) Zea mays full-length cDNA clone ZM... 54 2e-06
AX040986_1(AX040986|pid:none) Sequence 33 from Patent WO0065040.... 54 2e-06
BC044378_1(BC044378|pid:none) Danio rerio cyclin T2, mRNA (cDNA ... 54 3e-06
BC044435_1(BC044435|pid:none) Danio rerio si:dkey-18f23.10, mRNA... 54 3e-06
(Q6BYF8) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 54 3e-06
EU972675_1(EU972675|pid:none) Zea mays clone 385771 cyclin-C mRN... 54 3e-06
(Q1EAW8) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 54 3e-06
AF048731_1(AF048731|pid:none) Homo sapiens cyclin T2a mRNA, comp... 54 3e-06
BT060456_1(BT060456|pid:none) Zea mays full-length cDNA clone ZM... 54 3e-06
AF048732_1(AF048732|pid:none) Homo sapiens cyclin T2b mRNA, comp... 54 3e-06
AK290990_1(AK290990|pid:none) Homo sapiens cDNA FLJ76043 complet... 53 6e-06
(O60563) RecName: Full=Cyclin-T1; Short=CycT1; ... 53 6e-06
FN357699_11(FN357699|pid:none) Schistosoma mansoni genome sequen... 52 8e-06
(P39947) RecName: Full=Cyclin-C; 52 8e-06
AB294577_5(AB294577|pid:none) Rattus norvegicus DNA, chromosome ... 52 8e-06
AK013634_1(AK013634|pid:none) Mus musculus adult male hippocampu... 52 8e-06
AK154439_1(AK154439|pid:none) Mus musculus NOD-derived CD11c +ve... 52 8e-06
(O94503) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 52 1e-05
AY439093_1(AY439093|pid:none) Glycine max cyclin H mRNA, partial... 52 1e-05
EU952084_1(EU952084|pid:none) Zea mays clone 1159486 cyclin-depe... 51 2e-05
(Q4P101) RecName: Full=RNA polymerase II holoenzyme cyclin-like ... 50 3e-05
(Q9FKE6) RecName: Full=Cyclin-T1-5; Short=CycT1;5; AltN... 50 4e-05
AK152399_1(AK152399|pid:none) Mus musculus bone marrow macrophag... 50 5e-05
HB439807_1(HB439807|pid:none) Sequence 2625 from Patent WO200907... 49 9e-05
(Q9QWV9) RecName: Full=Cyclin-T1; Short=CycT1; ... 49 1e-04
(Q8GYM6) RecName: Full=Cyclin-T1-4; Short=CycT1;4; AltN... 49 1e-04
BT052856_1(BT052856|pid:none) Medicago truncatula clone MTYFL_FM... 48 1e-04
(O74627) RecName: Full=Cyclin pch1; AltName: Full=Pombe cyclin C... 48 1e-04
(Q6Z7H3) RecName: Full=Cyclin-T1-2; Short=CycT1;2; &AK... 48 2e-04
AF113951_1(AF113951|pid:none) Mus musculus cyclin T mRNA, comple... 48 2e-04
AF249734_1(AF249734|pid:none) Arabidopsis thaliana ania-6a type ... 47 3e-04
EF147853_1(EF147853|pid:none) Populus trichocarpa clone WS0125_H... 47 3e-04
(Q28F72) RecName: Full=Cyclin-C; &CR762131_1(CR762131|pid:none) 47 4e-04
(P55168) RecName: Full=Cyclin-C; &U40873_1(U40873|pid:none) 47 4e-04
AY091085_1(AY091085|pid:none) Arabidopsis thaliana putative cycl... 47 4e-04
(Q4KLA0) RecName: Full=Cyclin-C; &BC099287_1(BC099287|pid:none)... 47 4e-04
AK341217_1(AK341217|pid:none) Acyrthosiphon pisum ACYPI001314 mR... 46 6e-04
AK153035_1(AK153035|pid:none) Mus musculus bone marrow macrophag... 46 6e-04
(Q29AI1) RecName: Full=Cyclin-C; 46 7e-04
AK291914_1(AK291914|pid:none) Homo sapiens cDNA FLJ77471 complet... 46 7e-04
CU638743_379(CU638743|pid:none) Podospora anserina genomic DNA c... 46 7e-04
(Q9C8P7) RecName: Full=Putative cyclin-T1-1; Short=CycT... 46 7e-04
Z83226_1(Z83226|pid:none) Caenorhabditis elegans Cosmid F43D2, c... 46 7e-04
AL772187_2(AL772187|pid:none) Mouse DNA sequence from clone RP23... 46 7e-04
AY398320_1(AY398320|pid:none) Danio rerio clone RK142A1F07 cycli... 46 7e-04
(P24863) RecName: Full=Cyclin-C; AltName: Full=SRB11 homolog; ... 46 7e-04
AK037957_1(AK037957|pid:none) Mus musculus 16 days neonate thymu... 46 7e-04
U40886_1(U40886|pid:none) Gallus gallus cyclin C gene, exon 13, ... 46 7e-04
A40268(A40268) cyclin C - human &U40739_1(U40739|pid:none) 46 7e-04
U92879_1(U92879|pid:none) Schizosaccharomyces pombe cyclin C hom... 45 0.001
(Q7QB13) RecName: Full=Cyclin-C; &HB439787_1(HB439787|pid:none) 45 0.001
DQ789059_1(DQ789059|pid:none) Rana catesbeiana cyclin C (CCNC) m... 45 0.002
(P25008) RecName: Full=Cyclin-C; &A40269(A40269;A39478;S22125) ... 45 0.002
(Q9TYP2) RecName: Full=Cyclin-C; &AF125448_7(AF125448|pid:none) 45 0.002
AE014134_3676(AE014134|pid:none) Drosophila melanogaster chromos... 44 0.002
AF508218_1(AF508218|pid:none) Dreissena polymorpha cyclin C mRNA... 44 0.003
(P0C654) RecName: Full=Cyclin-C; 44 0.003
(Q16JA2) RecName: Full=Cyclin-C; &HB439785_1(HB439785|pid:none) 44 0.003
EU967920_1(EU967920|pid:none) Zea mays clone 311293 unknown mRNA. 44 0.004
BT063609_1(BT063609|pid:none) Zea mays full-length cDNA clone ZM... 44 0.004
BT053050_1(BT053050|pid:none) Medicago truncatula clone MTYFL_FM... 44 0.004
CR382131_562(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 44 0.004
EU963648_1(EU963648|pid:none) Zea mays clone 265121 cyclin-L2 mR... 44 0.004
BT080261_1(BT080261|pid:none) Caligus clemensi clone ccle-evs-51... 43 0.005
AE014187_603(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.005
AJ245852_1(AJ245852|pid:none) Plasmodium falciparum cyc-1 gene f... 43 0.005
EU711048_1(EU711048|pid:none) Psetta maxima cyclin H mRNA, parti... 43 0.006
BT083848_1(BT083848|pid:none) Zea mays full-length cDNA clone ZM... 43 0.006
AM485256_1(AM485256|pid:none) Vitis vinifera contig VV78X267668.... 43 0.006
(Q6NRK9) RecName: Full=Cyclin-related protein FAM58A; 43 0.006
U40874_1(U40874|pid:none) Gallus gallus cyclin C mRNA, alternati... 42 0.008
CP001576_22(CP001576|pid:none) Micromonas sp. RCC299 chromosome ... 42 0.008
(Q62447) RecName: Full=Cyclin-C; &U62638_1(U62638|pid:none) 42 0.011
(Q9AS36) RecName: Full=Cyclin-L1-1; Short=CycL1;1; &AP... 42 0.011
U40878_1(U40878|pid:none) Gallus gallus cyclin C gene, exon 5. 42 0.014
BC093550_1(BC093550|pid:none) Xenopus laevis hypothetical protei... 41 0.018
AF060517_1(AF060517|pid:none) Mus musculus cyclin K mRNA, partia... 41 0.018
AJ719906_1(AJ719906|pid:none) Gallus gallus mRNA for hypothetica... 41 0.018
BC129121_1(BC129121|pid:none) Rattus norvegicus cyclin K, mRNA (... 41 0.018
AK146711_1(AK146711|pid:none) Mus musculus 17 days embryo kidney... 41 0.018
(Q2RAC5) RecName: Full=Cyclin-T1-3; Short=CycT1;3; &AC... 41 0.018
BC121394_1(BC121394|pid:none) Xenopus tropicalis cyclin K, mRNA ... 41 0.018
AF270832_1(AF270832|pid:none) Homo sapiens cyclin K (CCNK) gene,... 41 0.018
AB168149_1(AB168149|pid:none) Macaca fascicularis testis cDNA cl... 41 0.018
AF542236_1(AF542236|pid:none) Homo sapiens cyclin K (CCNK) gene,... 41 0.018
AK154765_1(AK154765|pid:none) Mus musculus NOD-derived CD11c +ve... 41 0.018
BC026272_1(BC026272|pid:none) Homo sapiens cyclin C, mRNA (cDNA ... 41 0.023
CP000588_218(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.031
FN357319_23(FN357319|pid:none) Schistosoma mansoni genome sequen... 40 0.031
X72890_1(X72890|pid:none) S.cerevisiae CLB6 gene for B-type cycl... 40 0.040
AY811891_1(AY811891|pid:none) Schistosoma japonicum SJCHGC05832 ... 40 0.040
(P32943) RecName: Full=S-phase entry cyclin-6; &AY693095_1(AY69... 40 0.040
BX649499_4(BX649499|pid:none) Zebrafish DNA sequence from clone ... 40 0.052
(O88874) RecName: Full=Cyclin-K; &BC027297_1(BC027297|pid:none) 39 0.068
BC068369_1(BC068369|pid:none) Danio rerio cyclin I, mRNA (cDNA c... 39 0.068
(Q56YF8) RecName: Full=Cyclin-T1-2; Short=CycT1;2; &AK... 39 0.089
AM920437_1166(AM920437|pid:none) Penicillium chrysogenum Wiscons... 39 0.089
AF051933_1(AF051933|pid:none) Drosophila melanogaster cyclin T m... 39 0.089
CR954202_350(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 39 0.089
X70436_1(X70436|pid:none) S.cerevisiae (K1107) CLB6 gene. 39 0.12
AM910994_418(AM910994|pid:none) Plasmodium knowlesi strain H chr... 39 0.12
FN392320_104(FN392320|pid:none) Pichia pastoris GS115 chromosome... 38 0.15
BT024941_1(BT024941|pid:none) Drosophila melanogaster IP16034 fu... 38 0.20
AF052484_1(AF052484|pid:none) Paramecium tetraurelia mitotic cyc... 37 0.26
BC061670_1(BC061670|pid:none) Xenopus laevis hypothetical protei... 37 0.26
AL021176_2(AL021176|pid:none) Caenorhabditis elegans YAC Y43E12A... 37 0.26
CR954208_230(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 37 0.26
AC006666_1(AC006666|pid:none) Caenorhabditis elegans fosmid H31G... 37 0.26
CP001574_598(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 37 0.34
CU638744_737(CU638744|pid:none) Podospora anserina genomic DNA c... 37 0.34
AF250284_25(AF250284|pid:none) Amsacta moorei entomopoxvirus, co... 37 0.34
AF025907_1(AF025907|pid:none) Paramecium tetraurelia cyclin B2 m... 37 0.34
U87966_1(U87966|pid:none) Paramecium tetraurelia cyclin mRNA, pa... 37 0.34
AE017345_412(AE017345|pid:none) Cryptococcus neoformans var. neo... 37 0.34
AM433872_1(AM433872|pid:none) Vitis vinifera contig VV78X129305.... 37 0.44
AE017346_75(AE017346|pid:none) Cryptococcus neoformans var. neof... 37 0.44
BC136194_1(BC136194|pid:none) Xenopus tropicalis hypothetical pr... 37 0.44
AM435495_1(AM435495|pid:none) Vitis vinifera contig VV78X010267.... 37 0.44
(P47794) RecName: Full=G1/S-specific cyclin-E1; &BC045842_1(BC0... 37 0.44
(Q0E474) RecName: Full=Cyclin-T1-1; Short=CycT1;1; &AP... 37 0.44
CR380959_480(CR380959|pid:none) Candida glabrata strain CBS138 c... 36 0.58
Z47203_1(Z47203|pid:none) K.lactis gene for TFIIIB (BRF1) subunit. 36 0.58
(P46070) RecName: Full=Transcription factor IIIB 70 kDa subunit;... 36 0.58
CP000582_275(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 36 0.58
(P29056) RecName: Full=Transcription factor IIIB 70 kDa subunit;... 36 0.58
T20155(T20155)hypothetical protein C52E4.6b - Caenorhabditis ele... 36 0.75
AY557405_1(AY557405|pid:none) Caenorhabditis elegans cyclin L (c... 36 0.75
BC071014_1(BC071014|pid:none) Xenopus laevis cyclin B4, mRNA (cD... 35 0.98
AE017199_271(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 35 0.98
CP000496_526(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 35 1.3
CU928175_473(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 35 1.3
FN392320_415(FN392320|pid:none) Pichia pastoris GS115 chromosome... 35 1.7
AB026627_1(AB026627|pid:none) Carassius auratus mRNA for cyclin ... 35 1.7
CT027583_4(CT027583|pid:none) Zebrafish DNA sequence from clone ... 34 2.2
AP007161_806(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 34 2.2
CR382126_1138(CR382126|pid:none) Kluyveromyces lactis strain NRR... 34 2.2
FM992688_380(FM992688|pid:none) Candida dubliniensis CD36 chromo... 34 2.2
CP001014_1765(CP001014|pid:none) Thermoproteus neutrophilus V24S... 34 2.2
CP000500_284(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 34 2.2
CR954256_3(CR954256|pid:none) Anopheles gambiae Pen-1 region; BA... 34 2.9
(Q8LBC0) RecName: Full=Cyclin-T1-3; Short=CycT1;3; &AC... 34 2.9
AX885745_1(AX885745|pid:none) Sequence 1608 from Patent EP1033401. 34 2.9
BC168911_1(BC168911|pid:none) Rattus norvegicus TAF6-like RNA po... 34 2.9
AL034388_1(AL034388|pid:none) Drosophila melanogaster cosmid clo... 34 2.9
CR954256_2(CR954256|pid:none) Anopheles gambiae Pen-1 region; BA... 34 2.9
BC158316_1(BC158316|pid:none) Xenopus tropicalis cDNA clone MGC:... 34 2.9
AF467251_1(AF467251|pid:none) Mus musculus cyclin ania-6a (Ccn1)... 33 3.7
CP001142_399(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 33 3.7
(Q9Z2V9) RecName: Full=Cyclin-I; 33 3.7
BC140645_1(BC140645|pid:none) Bos taurus cyclin T1, mRNA (cDNA c... 33 3.7
AM457383_4(AM457383|pid:none) Vitis vinifera contig VV78X276383.... 33 3.7
AM270150_17(AM270150|pid:none) Aspergillus niger contig An07c033... 33 3.7
BC007232_1(BC007232|pid:none) Homo sapiens family with sequence ... 33 3.7
AE016816_246(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 33 3.7
(Q8QZR8) RecName: Full=Cyclin-related protein FAM58A; &AL591376... 33 4.9
AY061233_1(AY061233|pid:none) Drosophila melanogaster LD17578 fu... 33 4.9
EU971434_1(EU971434|pid:none) Zea mays clone 364664 unknown mRNA... 33 4.9
FN319103_1(FN319103|pid:none) Schistosoma japonicum isolate Anhu... 33 4.9
FN319102_1(FN319102|pid:none) Schistosoma japonicum isolate Anhu... 33 4.9
AE000512_1580(AE000512|pid:none) Thermotoga maritima MSB8, compl... 33 4.9
M64349_1(M64349|pid:none) Human cyclin D (cyclin D1) mRNA, compl... 33 4.9
EU525165_1(EU525165|pid:none) Ovis aries cyclin D1 mRNA, partial... 33 4.9
(P54733) RecName: Full=G1/S-specific cyclin-E; Short=Dm... 33 4.9
FN357388_10(FN357388|pid:none) Schistosoma mansoni genome sequen... 33 4.9
AP007161_715(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 33 4.9
(Q14094) RecName: Full=Cyclin-I; &AF135162_1(AF135162|pid:none)... 33 6.4
BC086445_1(BC086445|pid:none) Rattus norvegicus family with sequ... 33 6.4
(Q64HP0) RecName: Full=G1/S-specific cyclin-D1; &AY620434_1(AY6... 33 6.4
EF423874_1(EF423874|pid:none) Felis catus cyclin D1 mRNA, partia... 33 6.4
AK057280_1(AK057280|pid:none) Homo sapiens cDNA FLJ32718 fis, cl... 33 6.4
AK050465_1(AK050465|pid:none) Mus musculus adult pancreas islet ... 33 6.4
BC139645_1(BC139645|pid:none) Danio rerio si:ch211-203b8.5, mRNA... 33 6.4
(Q4QQW5) RecName: Full=Cyclin-related protein FAM58A; &BC097941... 33 6.4
AY890951_1(AY890951|pid:none) Synthetic construct Homo sapiens c... 33 6.4
BT043551_1(BT043551|pid:none) Salmo salar clone HM4_2102 cyclin ... 33 6.4
AK222931_1(AK222931|pid:none) Homo sapiens mRNA for cyclin I var... 33 6.4
(Q8R2K4) RecName: Full=TAF6-like RNA polymerase II p300/CBP-asso... 33 6.4
BC097120_1(BC097120|pid:none) Danio rerio si:ch211-203b8.5, mRNA... 33 6.4
AY888352_1(AY888352|pid:none) Synthetic construct Homo sapiens c... 33 6.4
AY227808_1(AY227808|pid:none) Lytechinus variegatus cyclin B mRN... 33 6.4
AY950561_1(AY950561|pid:none) Macaca mulatta cyclin D1 mRNA, par... 32 8.3
AY890386_1(AY890386|pid:none) Synthetic construct Homo sapiens c... 32 8.3
AF205429_1(AF205429|pid:none) Sulfolobus acidocaldarius archaeal... 32 8.3
BC008785_1(BC008785|pid:none) Homo sapiens TAF6-like RNA polymer... 32 8.3
CP001055_698(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 32 8.3
AY891237_1(AY891237|pid:none) Synthetic construct Homo sapiens c... 32 8.3
(Q9Y6J9) RecName: Full=TAF6-like RNA polymerase II p300/CBP-asso... 32 8.3
AK289499_1(AK289499|pid:none) Homo sapiens cDNA FLJ78693 complet... 32 8.3
AE000511_356(AE000511|pid:none) Helicobacter pylori 26695, compl... 32 8.3
BT059267_1(BT059267|pid:none) Salmo salar clone ssal-rgf-537-296... 32 8.3
BC158441_1(BC158441|pid:none) Xenopus tropicalis cyclin L1, mRNA... 32 8.3
(Q9UWN6) RecName: Full=Transcription initiation factor IIB; ... 32 8.3
CR382136_714(CR382136|pid:none) Debaryomyces hansenii strain CBS... 32 8.3
AE016818_134(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 32 8.3
AF255307_1(AF255307|pid:none) Homo sapiens cyclin T1 gene, parti... 32 8.3
(Q5R6J5) RecName: Full=G1/S-specific cyclin-D1; &CR860494_1(CR8... 32 8.3
CU928175_252(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 32 8.3
(P24385) RecName: Full=G1/S-specific cyclin-D1; AltName: Full=PR... 32 8.3
>(Q55F19) RecName: Full=Putative cyclin-H;
Length = 286
Score = 305 bits (782), Expect = 4e-82
Identities = 151/152 (99%), Positives = 151/152 (99%)
Frame = +2
Query: 89 MSYNESSQIKYWMFNNEGLKKLREQCNNQHKQVILEKTPSSEPNILSPDDELSLIHYYET 268
MSYNESSQIKYWMFNNEGLKKLREQCNNQHKQVILEKTPSSEPNILSPDDELSLIHYYET
Sbjct: 1 MSYNESSQIKYWMFNNEGLKKLREQCNNQHKQVILEKTPSSEPNILSPDDELSLIHYYET 60
Query: 269 KTLEIAMALNLPDKVSATAIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDIDY 448
KTLEIAMALNLPDKVSA AIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDIDY
Sbjct: 61 KTLEIAMALNLPDKVSAPAIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDIDY 120
Query: 449 YSNITKASPSDITNLEIIILESLNFNLIVYHP 544
YSNITKASPSDITNLEIIILESLNFNLIVYHP
Sbjct: 121 YSNITKASPSDITNLEIIILESLNFNLIVYHP 152
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 633,233,330
Number of extensions: 10372358
Number of successful extensions: 29096
Number of sequences better than 10.0: 264
Number of HSP's gapped: 28951
Number of HSP's successfully gapped: 270
Length of query: 181
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 61
Effective length of database: 668,971,921
Effective search space: 40807287181
Effective search space used: 40807287181
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |