| Contig-U03476-1 |
| Contig ID |
Contig-U03476-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1084 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
1470279 |
| End point |
1471339 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
5 |
| Number of EST |
6 |
| Link to clone list |
U03476 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6. 1 |
| Homology vs DNA |
Query= Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Contig-U03476-1Q.Seq.d
(1084 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ399872) Dictyostelium discoideum cDNA clone:dds7h20, 3' e... 1350 0.0 1
(C93064) Dictyostelium discoideum slug cDNA, clone SSF730. 1152 0.0 1
(BJ388089) Dictyostelium discoideum cDNA clone:dds7h20, 5' e... 993 0.0 1
(AU262009) Dictyostelium discoideum vegetative cDNA clone:VS... 870 0.0 1
(AU038945) Dictyostelium discoideum slug cDNA, clone SSM179. 507 e-139 1
(AU072372) Dictyostelium discoideum slug cDNA, clone SSE336. 357 6e-94 1
(AU037822) Dictyostelium discoideum slug cDNA, clone SSE336. 165 4e-36 1
(CP000609) Methanococcus maripaludis C5, complete genome. 36 0.050 20
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 0.077 11
(CU915379) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.11 2
(FP102494) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.11 2
(DQ280166) Muntiacus muntjak vaginalis chromosome 1 clone 05... 36 0.16 4
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 50 0.18 1
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 36 0.23 17
(CT573162) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 0.24 5
(ET717884) CHO_OF114xn23f1.ab1 CHO_OF Nicotiana tabacum geno... 32 0.26 4
(ET717970) CHO_OF114xn23r1.ab1 CHO_OF Nicotiana tabacum geno... 32 0.28 4
(CR312241) mte1-34P23RM1 BAC end, cultivar Jemalong A17 of M... 36 0.31 3
(AC184088) Populus trichocarpa clone Pop1-58J8, complete seq... 40 0.40 6
(EJ011352) 1095403724492 Global-Ocean-Sampling_GS-26-01-01-1... 40 0.52 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.55 10
(AC217170) Bos taurus Y Chr NOVECTOR CH240-486B21 (Children'... 44 0.59 5
(AC163885) Bos taurus clone CH240-88G20, WORKING DRAFT SEQUE... 44 0.66 3
(EK176432) 1095458099583 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.68 2
(BX511117) Mouse DNA sequence from clone RP23-143C1 on chrom... 48 0.71 1
(BX323061) Mouse DNA sequence from clone RP24-267L10 on chro... 48 0.71 1
(AC230797) Bos taurus clone CH240-498K9, WORKING DRAFT SEQUE... 48 0.71 1
(AC167526) Dasypus novemcinctus clone VMRC5-3C9, WORKING DRA... 48 0.71 1
(AC163778) Bos taurus clone CH240-142D11, WORKING DRAFT SEQU... 48 0.71 1
(EJ417081) 1093012190599 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.71 1
(AJ799909) Antirrhinum majus EST, clone 018_4_08_o23. 48 0.71 1
(AJ799220) Antirrhinum majus EST, clone 018_4_07_a10. 48 0.71 1
(AC170334) Bos taurus clone CH240-245B9, WORKING DRAFT SEQUE... 40 0.74 5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.74 9
(AX344565) Sequence 16 from Patent WO0200932. 34 0.79 14
(AE015927) Clostridium tetani E88, complete genome. 38 0.85 20
(BX324146) Zebrafish DNA sequence from clone CH211-207C15 in... 40 0.97 7
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 30 0.99 8
(BX088597) Zebrafish DNA sequence from clone DKEY-171P23 in ... 36 1.1 8
(FP236662) Brassica rapa subsp. pekinensis clone KBrH028G16,... 42 1.1 4
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 1.2 17
(AL929220) Zebrafish DNA sequence from clone DKEY-65B13 in l... 44 1.2 6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 1.4 19
(AC107088) Rattus norvegicus clone CH230-225D19, WORKING DRA... 36 1.4 2
(AC025258) Homo sapiens chromosome 12 clone RP11-398O17, WOR... 32 1.5 2
(AC016256) Homo sapiens 12 BAC RP11-98E6 (Roswell Park Cance... 32 1.5 2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 1.6 11
(CR550306) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 1.6 5
(AC225923) Oryza officinalis clone OO__Ba0054P07, *** SEQUEN... 38 1.7 4
(AC178538) Strongylocentrotus purpuratus clone R3-3031E16, W... 32 1.7 9
(AL445187) Human DNA sequence from clone RP11-576C12 on chro... 42 2.0 4
(CD920814) G608.118H08R011030 G608 Triticum aestivum cDNA cl... 44 2.0 2
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 2.1 5
(BV494643) S217P62503FG2.T0 Noemie Pan troglodytes troglodyt... 36 2.1 2
(CE498628) tigr-gss-dog-17000327321446 Dog Library Canis lup... 36 2.1 2
(AC024844) Caenorhabditis elegans cosmid Y65B4A, complete se... 32 2.1 7
(AE001438) Clostridium acetobutylicum ATCC 824 megaplasmid p... 38 2.2 9
(AC170705) Oryctolagus cuniculus clone LB1-210P1, WORKING DR... 40 2.2 6
(AB027295) Physarum polycephalum mitochondrial DNA, complete... 36 2.2 6
(AJ515534) Antirrhinum hispanicum slf-S4D, slf-S4A and slf-S... 42 2.3 2
(EL827906) CBWN10264.g1 NICHD_XGC_tropTe1 Xenopus (Silurana)... 36 2.4 2
(EJ767520) 1092963316549 Global-Ocean-Sampling_GS-30-02-01-1... 40 2.4 2
(ED317682) AUAC-aah49f06.g1 Ascaris suum whole genome shotgu... 44 2.5 2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 2.5 14
(EJ757608) 1092963096025 Global-Ocean-Sampling_GS-30-02-01-1... 40 2.7 2
(CT027789) Zebrafish DNA sequence from clone DKEY-241O22 in ... 46 2.8 1
(AC098526) Rattus norvegicus BAC CH230-94G22 (Children's Ho... 46 2.8 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 46 2.8 1
(AL162725) Human DNA sequence from clone RP11-132E11 on chro... 46 2.8 1
(AC153203) Bos taurus clone CH240-33I6, WORKING DRAFT SEQUEN... 46 2.8 1
(AC121614) Rattus norvegicus clone CH230-221H5, WORKING DRAF... 46 2.8 1
(AC112539) Rattus norvegicus clone CH230-167B23, *** SEQUENC... 46 2.8 1
(AC103131) Rattus norvegicus clone CH230-211K2, *** SEQUENCI... 46 2.8 1
(AC103090) Rattus norvegicus clone CH230-100C10, WORKING DRA... 46 2.8 1
(CU468095) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.8 1
(AL499603) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.8 1
(AC224058) Bos taurus clone CH240-451F11, WORKING DRAFT SEQU... 46 2.8 1
(AC016411) Homo sapiens clone RP11-8L13, LOW-PASS SEQUENCE S... 46 2.8 1
(EK541999) 1095516063599 Global-Ocean-Sampling_GS-32-01-01-1... 46 2.8 1
(DE545230) Bombyx mori genomic DNA, Fosmid clone:GBMFno177_e... 46 2.8 1
(CC916273) t090p24ba.r1 TAMBT Bos taurus genomic clone t090p... 46 2.8 1
(EL840866) CBXT2712.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ... 46 2.8 1
(EL825817) CBWN8617.g1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 46 2.8 1
(EL705688) CBSU4649.fwd NICHD_XGC_tropLimb_m Xenopus (Silura... 46 2.8 1
(EL641544) CBTC6090.fwd NICHD_XGC_tropBone1 Xenopus (Siluran... 46 2.8 1
(EL641543) CBTC6090.rev NICHD_XGC_tropBone1 Xenopus (Siluran... 46 2.8 1
(DT533547) JGI_CABH5053.fwd NIH_XGC_tropSkeMus1 Xenopus (Sil... 46 2.8 1
(DR895132) JGI_XZT33499.rev NIH_XGC_tropTad5 Xenopus (Silura... 46 2.8 1
(CX406716) JGI_XZT61999.rev NIH_XGC_tropTad5 Xenopus (Silura... 46 2.8 1
(CX330033) JGI_XZT68633.rev NIH_XGC_tropTad5 Xenopus (Silura... 46 2.8 1
(CX313591) JGI_XZT9317.rev NIH_XGC_tropTad5 Xenopus (Siluran... 46 2.8 1
(CR441477) Xenopus tropicalis EST, clone TTbA076f14 3'. 46 2.8 1
(CR432221) Xenopus tropicalis EST, clone TTbA059i04 5'. 46 2.8 1
(AL643867) Xenopus tropicalis EST, clone L1G4f7 5'. 46 2.8 1
(BX770065) Xenopus tropicalis EST, clone TEgg034p19 3'. 46 2.8 1
(CP000395) Borrelia afzelii PKo, complete genome. 46 2.8 1
(CP000323) Psychrobacter cryohalolentis K5, complete genome. 46 2.8 1
(CP000932) Campylobacter lari RM2100, complete genome. 34 3.2 19
(CR354544) Zebrafish DNA sequence from clone CH211-273A21 in... 38 3.6 4
(FP085415) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 3.6 3
(AE017308) Mycoplasma mobile 163K complete genome. 32 3.7 15
(AL807234) Mouse DNA sequence from clone RP23-293E12 on chro... 42 3.8 5
(CP000312) Clostridium perfringens SM101, complete genome. 38 4.0 16
(AC129466) Rattus norvegicus clone CH230-6B20, *** SEQUENCIN... 40 4.0 4
(FH760618) OSB_1162004xi06r1.ab1 OSB_1162 Nicotiana tabacum ... 34 4.0 2
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 4.1 12
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 4.1 20
(AC106420) Rattus norvegicus clone CH230-129P15, *** SEQUENC... 38 4.4 6
(FP067353) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.4 9
(AL683857) Mouse DNA sequence from clone RP23-46O18 on chrom... 34 4.5 6
(AM487218) Vitis vinifera contig VV78X114036.12, whole genom... 42 4.5 2
(AC144531) Homo sapiens 3 BAC RP11-945M2 (Roswell Park Cance... 32 4.6 9
(EJ206122) 1092344349745 Global-Ocean-Sampling_GS-27-01-01-1... 34 4.9 3
(CR356226) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 5.0 7
(AC190090) Sorex araneus clone SA_Ba-162L1, WORKING DRAFT SE... 34 5.1 6
(EJ002687) 1091120975292 Global-Ocean-Sampling_GS-26-01-01-1... 34 5.3 3
(EJ277418) 1095366029876 Global-Ocean-Sampling_GS-27-01-01-1... 38 5.4 3
(AP011071) Solanum lycopersicum DNA, chromosome 8, clone: C0... 32 5.4 2
(EJ457712) 1093017953009 Global-Ocean-Sampling_GS-28-01-01-1... 34 5.4 3
(ET869424) CHO_OF300xo12f1.ab1 CHO_OF Nicotiana tabacum geno... 34 5.4 2
(AE017263) Mesoplasma florum L1 complete genome. 34 5.5 13
(AX345379) Sequence 450 from Patent WO0200928. 36 5.5 5
(AC019340) Homo sapiens BAC clone RP11-715L17 from 7, comple... 32 5.7 6
(EJ995155) 1093023082689 Global-Ocean-Sampling_GS-30-02-01-1... 32 5.8 3
(AM458322) Vitis vinifera contig VV78X277228.5, whole genome... 36 5.8 2
(ER439780) 1092963809033 Global-Ocean-Sampling_GS-35-01-01-1... 36 6.0 3
(EK296018) 1095462347562 Global-Ocean-Sampling_GS-31-01-01-1... 34 6.0 3
(AC099723) Mus musculus chromosome 8, clone RP23-369P21, com... 40 6.2 5
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 6.6 17
(AC091814) Homo sapiens 12p BAC RP11-290C10 (Roswell Park Ca... 42 6.7 6
(EK408412) 1095505102212 Global-Ocean-Sampling_GS-31-01-01-1... 34 6.8 3
(AM451060) Vitis vinifera contig VV78X060552.11, whole genom... 34 6.9 5
(EK373979) 1095469431000 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.1 2
(EK566043) 1095521041750 Global-Ocean-Sampling_GS-32-01-01-1... 34 7.1 2
(EJ145755) 1092343711214 Global-Ocean-Sampling_GS-27-01-01-1... 34 7.1 2
(EK370386) 1095469414392 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.1 2
(CJ376197) Molgula tectiformis cDNA, gastrula/neurula clone:... 34 7.1 2
(DW259524) UI-S-GG1-aaw-d-16-0-UI.s1 UI-S-GG1 Euprymna scolo... 34 7.2 2
(CJ419247) Molgula tectiformis cDNA, larva clone:mtlv032o24,... 34 7.2 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 7.2 12
(CJ370028) Molgula tectiformis cDNA, gastrula/neurula clone:... 34 7.2 2
(CJ395176) Molgula tectiformis cDNA, gonad clone:mtgd024j22,... 34 7.2 2
(CJ346634) Molgula tectiformis cDNA, cleaving embryo clone:m... 34 7.3 2
(CJ347248) Molgula tectiformis cDNA, cleaving embryo clone:m... 34 7.3 2
(BX957299) Zebrafish DNA sequence from clone DKEY-179E8 in l... 38 7.4 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 7.4 11
(AC164589) Mus musculus chromosome 8, clone RP24-363C11, com... 40 7.7 5
(AC023406) Homo sapiens clone RP11-249L2, WORKING DRAFT SEQU... 44 7.7 3
(AC141604) Homo sapiens chromosome 16 clone RP11-35F9, WORKI... 36 7.8 6
(EX472604) NADI-aaa02c11.b1 Rhodnius_prolixus_EST_NADI_5th_i... 40 8.0 2
(EJ366216) 1092963706644 Global-Ocean-Sampling_GS-28-01-01-1... 42 8.3 2
(BX548174) Prochlorococcus marinus MED4 complete genome. 34 8.3 19
(AM435130) Vitis vinifera contig VV78X123562.7, whole genome... 40 9.0 2
(AC084672) Caenorhabditis briggsae cosmid G47I10, complete s... 36 9.0 3
(EJ991700) 1093023054590 Global-Ocean-Sampling_GS-30-02-01-1... 42 9.3 2
(FH760790) OSB_1162004xd14f1.ab1 OSB_1162 Nicotiana tabacum ... 34 9.4 2
(AL929004) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.4 4
(FH938745) CHO_OF6659xi01f1.ab1 CHO_OF6 Nicotiana tabacum ge... 34 9.4 2
(FH759476) OSB_1162003xk04f1.ab1 OSB_1162 Nicotiana tabacum ... 34 9.4 2
(CT033808) Zebrafish DNA sequence from clone CH211-105H17 in... 34 9.4 6
(FH759481) OSB_1162003xk18f1.ab1 OSB_1162 Nicotiana tabacum ... 34 9.5 2
(AC010704) Arabidopsis thaliana chromosome 1 BAC T5M16 genom... 40 9.7 5
(FH760889) OSB_1162004xh16r1.ab1 OSB_1162 Nicotiana tabacum ... 34 9.9 2
>(BJ399872) Dictyostelium discoideum cDNA clone:dds7h20, 3' end,
single read.
Length = 710
Score = 1350 bits (681), Expect = 0.0
Identities = 685/687 (99%)
Strand = Plus / Minus
Query: 220 attttgaattcaatgatgatggattatggcaatttaatgggttggatggtacagattttg 279
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 710 attttgaattcaatgatgatggattatgncaatttaatgggttgnatggtacagattttg 651
Query: 280 ataagaataatggttttaaaactattaaagaattgtatacactctcagatccagattatg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ataagaataatggttttaaaactattaaagaattgtatacactctcagatccagattatg 591
Query: 340 gtgaacctgcaagattcacagtaccagtattatgggataagaaaacaaagaaaatcgtct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtgaacctgcaagattcacagtaccagtattatgggataagaaaacaaagaaaatcgtct 531
Query: 400 caaatgagtctggtgacattgttagaatctttagtactcaatttaattcaattgcaaaaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 caaatgagtctggtgacattgttagaatctttagtactcaatttaattcaattgcaaaaa 471
Query: 460 ataaagatttaaatttcagacctgacaatttaacaactaaaatcgatgaatttattgatt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ataaagatttaaatttcagacctgacaatttaacaactaaaatcgatgaatttattgatt 411
Query: 520 attatcaaaagaatttcttttttaaattttatcaagcattagatccacaaaaatattctg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attatcaaaagaatttcttttttaaattttatcaagcattagatccacaaaaatattctg 351
Query: 580 aaacatttgatacagtttttgcaacaattgaaaaattagagaaatatttaagtgaaaaca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaacatttgatacagtttttgcaacaattgaaaaattagagaaatatttaagtgaaaaca 291
Query: 640 atactaaatatttattttcagatgaaattacagaagcagatattaaattatttgtagttt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atactaaatatttattttcagatgaaattacagaagcagatattaaattatttgtagttt 231
Query: 700 taattagatttgatgttgttatatcaccagcatttagattaaattggaaaactactcgtg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 taattagatttgatgttgttatatcaccagcatttagattaaattggaaaactactcgtg 171
Query: 760 attatgcaaatattttcaaatatattcgtcgtttataccaaaatccagctatcaaaccaa 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 attatgcaaatattttcaaatatattcgtcgtttataccaaaatccagctatcaaaccaa 111
Query: 820 ctgtgaactttcattatattaaaggaatgtattttttaggtaaatatagtggttatgcta 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctgtgaactttcattatattaaaggaatgtattttttaggtaaatatagtggttatgcta 51
Query: 880 ataaatttattccaaaaggtccatgta 906
|||||||||||||||||||||||||||
Sbjct: 50 ataaatttattccaaaaggtccatgta 24
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,363,279,852
Number of extensions: 86993060
Number of successful extensions: 8162904
Number of sequences better than 10.0: 164
Length of query: 1084
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1060
Effective length of database: 99,340,224,878
Effective search space: 105300638370680
Effective search space used: 105300638370680
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.28 |
| Homology vs Protein |
Query= Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Contig-U03476-1Q.Seq.d
(1084 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FM178379_1201(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 188 2e-46
CP000758_1588(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 184 6e-45
AM181176_3710(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 184 6e-45
AF370272_1(AF370272|pid:none) Arabidopsis thaliana unknown prote... 183 1e-44
AE016853_3267(AE016853|pid:none) Pseudomonas syringae pv. tomato... 181 4e-44
CP000076_3823(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 180 9e-44
CP000117_1656(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 178 3e-43
CP000094_3576(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 178 3e-43
CP000744_2566(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 178 3e-43
CP000438_2429(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 177 4e-43
CP000680_2363(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 176 1e-42
AE004091_2611(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 176 1e-42
CP000075_3172(CP000075|pid:none) Pseudomonas syringae pv. syring... 176 2e-42
CT573326_2040(CT573326|pid:none) Pseudomonas entomophila str. L4... 176 2e-42
CP000949_3380(CP000949|pid:none) Pseudomonas putida W619, comple... 176 2e-42
FM954972_903(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 176 2e-42
CP001488_1493(CP001488|pid:none) Brucella melitensis ATCC 23457 ... 176 2e-42
BA000012_2159(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 175 2e-42
CP000712_1811(CP000712|pid:none) Pseudomonas putida F1, complete... 174 4e-42
CP000393_3966(CP000393|pid:none) Trichodesmium erythraeum IMS101... 174 5e-42
CP000926_3578(CP000926|pid:none) Pseudomonas putida GB-1, comple... 174 5e-42
EF078692_6(EF078692|pid:none) Azoarcus anaerobius transposase ge... 174 5e-42
CP000708_1386(CP000708|pid:none) Brucella ovis ATCC 25840 chromo... 174 6e-42
AE008917_454(AE008917|pid:none) Brucella melitensis 16M chromoso... 173 8e-42
CP000911_1537(CP000911|pid:none) Brucella suis ATCC 23445 chromo... 173 1e-41
CP000806_3181(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 171 4e-41
FN392320_330(FN392320|pid:none) Pichia pastoris GS115 chromosome... 170 9e-41
AE003852_1077(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 169 1e-40
CP001287_3594(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 169 2e-40
AC147481_6(AC147481|pid:none) Medicago truncatula chromosome 2 c... 169 2e-40
CP000628_2436(CP000628|pid:none) Agrobacterium radiobacter K84 c... 168 3e-40
BA000022_3162(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 168 3e-40
CP000407_635(CP000407|pid:none) Streptococcus suis 05ZYH33, comp... 168 3e-40
AL766847_54(AL766847|pid:none) Streptococcus agalactiae NEM316 c... 168 3e-40
CP000285_1128(CP000285|pid:none) Chromohalobacter salexigens DSM... 167 5e-40
CP000362_1239(CP000362|pid:none) Roseobacter denitrificans OCh 1... 166 1e-39
AE016795_2857(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 166 2e-39
CP000083_1724(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 166 2e-39
CP000393_2304(CP000393|pid:none) Trichodesmium erythraeum IMS101... 166 2e-39
CP000514_841(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 164 4e-39
CP000450_1139(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 164 4e-39
BA000037_1209(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 164 5e-39
CP001291_935(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 164 5e-39
EU960881_1(EU960881|pid:none) Zea mays clone 229366 glutathione ... 164 5e-39
CP000806_4502(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 163 9e-39
AM270347_42(AM270347|pid:none) Aspergillus niger contig An15c020... 163 9e-39
CU234118_4227(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 163 9e-39
AM039952_637(AM039952|pid:none) Xanthomonas campestris pv. vesic... 163 1e-38
AE017340_827(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 163 1e-38
CP000394_1884(CP000394|pid:none) Granulibacter bethesdensis CGDN... 163 1e-38
CP000943_4354(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 162 1e-38
AL591688_2379(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 162 1e-38
AM236080_3506(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 162 2e-38
CP000749_3455(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 162 2e-38
AY917145_1(AY917145|pid:none) Thlaspi caerulescens glutathione t... 161 4e-38
CP000264_368(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 160 6e-38
CP001037_2463(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 160 6e-38
CP000133_3021(CP000133|pid:none) Rhizobium etli CFN 42, complete... 160 7e-38
CP000304_1948(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 160 9e-38
AP007171_783(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 159 1e-37
EU895210_1(EU895210|pid:none) Escherichia coli strain 493/89 put... 159 1e-37
AE005174_4001(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 159 1e-37
CP000494_4402(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 159 1e-37
CP001622_3007(CP001622|pid:none) Rhizobium leguminosarum bv. tri... 159 2e-37
AJ000977_10(AJ000977|pid:none) Rhodobacter sphaeroides DNA for s... 159 2e-37
CP000377_2582(CP000377|pid:none) Silicibacter sp. TM1040, comple... 159 2e-37
CP000115_2660(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 158 3e-37
CP000802_3117(CP000802|pid:none) Escherichia coli HS, complete g... 158 3e-37
CP000270_1431(CP000270|pid:none) Burkholderia xenovorans LB400 c... 158 4e-37
BX950851_3166(BX950851|pid:none) Erwinia carotovora subsp. atros... 158 4e-37
AM946981_2922(AM946981|pid:none) Escherichia coli BL21, complete... 158 4e-37
CP000352_1653(CP000352|pid:none) Ralstonia metallidurans CH34, c... 157 6e-37
CU928158_4196(CU928158|pid:none) Escherichia fergusonii ATCC 354... 157 6e-37
CP000631_176(CP000631|pid:none) Agrobacterium radiobacter K84 pl... 157 8e-37
CP000800_3401(CP000800|pid:none) Escherichia coli E24377A, compl... 157 8e-37
CP000851_1171(CP000851|pid:none) Shewanella pealeana ATCC 700345... 157 8e-37
CP000036_2750(CP000036|pid:none) Shigella boydii Sb227, complete... 156 1e-36
CU928163_3513(CU928163|pid:none) Escherichia coli UMN026 chromos... 156 1e-36
CP000783_3429(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 156 1e-36
CP001389_2295(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 156 1e-36
AE017351_229(AE017351|pid:none) Cryptococcus neoformans var. neo... 156 1e-36
CP000038_3041(CP000038|pid:none) Shigella sonnei Ss046, complete... 156 1e-36
CR382135_788(CR382135|pid:none) Debaryomyces hansenii chromosome... 155 2e-36
CP001365_630(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 155 2e-36
AM180088_281(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 155 2e-36
(P42620) RecName: Full=Uncharacterized protein yqjG; &AP009048_... 155 3e-36
AP009384_3957(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 155 3e-36
CR382128_813(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 154 4e-36
CP001074_3176(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 154 5e-36
AM920689_641(AM920689|pid:none) Xanthomonas campestris pv. campe... 154 7e-36
CR382135_718(CR382135|pid:none) Debaryomyces hansenii strain CBS... 154 7e-36
CP000964_571(CP000964|pid:none) Klebsiella pneumoniae 342, compl... 154 7e-36
CP000050_584(CP000050|pid:none) Xanthomonas campestris pv. campe... 154 7e-36
CP001001_816(CP001001|pid:none) Methylobacterium radiotolerans J... 153 9e-36
FM180568_3395(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 153 1e-35
CP000243_3476(CP000243|pid:none) Escherichia coli UTI89, complet... 153 1e-35
CP000497_112(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 152 2e-35
AM920436_243(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 152 2e-35
CP000661_268(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 151 3e-35
CP000633_2359(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 151 4e-35
AM920436_676(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 151 4e-35
CR954247_101(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 150 6e-35
CP000090_1443(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 150 8e-35
CP001339_689(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, c... 150 8e-35
AM236080_16(AM236080|pid:none) Rhizobium leguminosarum bv. vicia... 150 8e-35
CP000613_3319(CP000613|pid:none) Rhodospirillum centenum SW, com... 150 1e-34
FM992695_185(FM992695|pid:none) Candida dubliniensis CD36 chromo... 150 1e-34
AP006725_4382(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 150 1e-34
CP000826_4316(CP000826|pid:none) Serratia proteamaculans 568, co... 149 1e-34
A97631(A97631)hypothetical 37.4K protein in exuR-tdcC intergenic... 149 2e-34
AD2854(AD2854) conserved hypothetical protein Atu2261 [imported]... 149 2e-34
CP000828_5756(CP000828|pid:none) Acaryochloris marina MBIC11017,... 148 3e-34
CP001113_3272(CP001113|pid:none) Salmonella enterica subsp. ente... 148 3e-34
CP000489_1712(CP000489|pid:none) Paracoccus denitrificans PD1222... 148 3e-34
AL024486_24(AL024486|pid:none) Arabidopsis thaliana DNA chromoso... 147 6e-34
CP000578_839(CP000578|pid:none) Rhodobacter sphaeroides ATCC 170... 147 6e-34
CP000886_3920(CP000886|pid:none) Salmonella enterica subsp. ente... 147 8e-34
AM933172_3060(AM933172|pid:none) Salmonella enterica subsp. ente... 147 8e-34
CP001138_3185(CP001138|pid:none) Salmonella enterica subsp. ente... 145 2e-33
AE006468_3142(AE006468|pid:none) Salmonella enterica subsp. ente... 145 2e-33
AE014613_2949(AE014613|pid:none) Salmonella enterica subsp. ente... 145 2e-33
AM286415_3565(AM286415|pid:none) Yersinia enterocolitica subsp. ... 145 2e-33
BX908809_48(BX908809|pid:none) Neurospora crassa DNA linkage gro... 145 2e-33
(O94524) RecName: Full=Glutathione S-transferase omega-like 2; ... 144 4e-33
CP001654_2666(CP001654|pid:none) Dickeya dadantii Ech703, comple... 144 7e-33
CP001016_1193(CP001016|pid:none) Beijerinckia indica subsp. indi... 143 1e-32
AE009952_110(AE009952|pid:none) Yersinia pestis KIM, complete ge... 142 2e-32
CP000901_1017(CP000901|pid:none) Yersinia pestis Angola, complet... 142 2e-32
CU468135_2913(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 142 2e-32
CP001655_1173(CP001655|pid:none) Dickeya zeae Ech1591, complete ... 142 2e-32
CP001389_819(CP001389|pid:none) Rhizobium sp. NGR234, complete g... 142 2e-32
CP001344_1776(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 142 2e-32
CP000606_2269(CP000606|pid:none) Shewanella loihica PV-4, comple... 142 3e-32
CP000144_147(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 142 3e-32
CP001344_2345(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 140 6e-32
CP000376_208(CP000376|pid:none) Silicibacter sp. TM1040 mega pla... 140 1e-31
AM270101_35(AM270101|pid:none) Aspergillus niger contig An05c001... 139 1e-31
CP000908_2215(CP000908|pid:none) Methylobacterium extorquens PA1... 138 3e-31
CR382126_523(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 137 9e-31
CP001298_2396(CP001298|pid:none) Methylobacterium chloromethanic... 136 1e-30
AE004437_1751(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 133 1e-29
AM420293_1568(AM420293|pid:none) Saccharopolyspora erythraea NRR... 132 2e-29
AK176687_1(AK176687|pid:none) Arabidopsis thaliana mRNA, complet... 131 5e-29
CP001366_208(CP001366|pid:none) Halorubrum lacusprofundi ATCC 49... 130 1e-28
AM270059_14(AM270059|pid:none) Aspergillus niger contig An03c018... 129 2e-28
CP000586_62(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ... 129 2e-28
CP000951_2372(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 127 5e-28
CP001032_1064(CP001032|pid:none) Opitutus terrae PB90-1, complet... 127 5e-28
CP001654_3337(CP001654|pid:none) Dickeya dadantii Ech703, comple... 127 9e-28
CU928170_734(CU928170|pid:none) Kluyveromyces thermotolerans str... 122 2e-26
CP000088_2988(CP000088|pid:none) Thermobifida fusca YX, complete... 122 3e-26
AP008957_4116(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 122 3e-26
AM420293_2796(AM420293|pid:none) Saccharopolyspora erythraea NRR... 120 6e-26
AP006618_4708(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 120 6e-26
AE009948_1283(AE009948|pid:none) Streptococcus agalactiae 2603V/... 119 2e-25
CP000656_1694(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 119 2e-25
CP000114_1235(CP000114|pid:none) Streptococcus agalactiae A909, ... 119 2e-25
AP009493_1338(AP009493|pid:none) Streptomyces griseus subsp. gri... 118 3e-25
BX248357_36(BX248357|pid:none) Corynebacterium diphtheriae gravi... 117 7e-25
CU458896_4546(CU458896|pid:none) Mycobacterium abscessus chromos... 117 9e-25
BA000030_7470(BA000030|pid:none) Streptomyces avermitilis MA-468... 114 8e-24
CP000431_5961(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 113 1e-23
CP001601_351(CP001601|pid:none) Corynebacterium aurimucosum ATCC... 112 3e-23
AM711867_2145(AM711867|pid:none) Clavibacter michiganensis subsp... 111 4e-23
CP000854_4591(CP000854|pid:none) Mycobacterium marinum M, comple... 111 5e-23
CP000454_2128(CP000454|pid:none) Arthrobacter sp. FB24, complete... 111 5e-23
CP001142_259(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 110 7e-23
CP000480_5505(CP000480|pid:none) Mycobacterium smegmatis str. MC... 110 1e-22
AM238664_828(AM238664|pid:none) Streptomyces ambofaciens ATCC 23... 110 1e-22
CP001341_1868(CP001341|pid:none) Arthrobacter chlorophenolicus A... 110 1e-22
CP000384_4456(CP000384|pid:none) Mycobacterium sp. MCS, complete... 109 2e-22
AP011115_6079(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 108 3e-22
CP001628_1834(CP001628|pid:none) Micrococcus luteus NCTC 2665, c... 108 3e-22
AM942444_747(AM942444|pid:none) Corynebacterium urealyticum DSM ... 108 4e-22
AX065613_1(AX065613|pid:none) Sequence 739 from Patent WO0100844... 108 4e-22
CR382128_94(CR382128|pid:none) Yarrowia lipolytica strain CLIB12... 108 4e-22
AF072709_7(AF072709|pid:none) Streptomyces lividans amplifiable ... 108 4e-22
AP009044_1361(AP009044|pid:none) Corynebacterium glutamicum R DN... 108 4e-22
CP000509_4459(CP000509|pid:none) Nocardioides sp. JS614, complet... 107 6e-22
CP000325_232(CP000325|pid:none) Mycobacterium ulcerans Agy99, co... 106 1e-21
(Q04806) RecName: Full=Glutathione S-transferase omega-like 3; ... 106 1e-21
CP000479_958(CP000479|pid:none) Mycobacterium avium 104, complet... 105 2e-21
AP009152_356(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 105 3e-21
CP000474_59(CP000474|pid:none) Arthrobacter aurescens TC1, compl... 104 5e-21
CP001575_367(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 102 2e-20
AK109850_1(AK109850|pid:none) Oryza sativa Japonica Group cDNA c... 101 5e-20
BT039391_1(BT039391|pid:none) Zea mays full-length cDNA clone ZM... 100 9e-20
CP000850_460(CP000850|pid:none) Salinispora arenicola CNS-205, c... 100 1e-19
CP000750_364(CP000750|pid:none) Kineococcus radiotolerans SRS302... 96 2e-18
CT573213_4041(CT573213|pid:none) Frankia alni str. ACN14A chromo... 93 1e-17
CP000489_1437(CP000489|pid:none) Paracoccus denitrificans PD1222... 91 9e-17
CP000110_508(CP000110|pid:none) Synechococcus sp. CC9605, comple... 90 1e-16
CP000552_252(CP000552|pid:none) Prochlorococcus marinus str. MIT... 87 1e-15
AE017126_250(AE017126|pid:none) Prochlorococcus marinus subsp. m... 84 7e-15
AM909629_1(AM909629|pid:none) Boea hygrometrica partial mRNA for... 81 7e-14
CP000095_280(CP000095|pid:none) Prochlorococcus marinus str. NAT... 80 2e-13
CP000111_232(CP000111|pid:none) Prochlorococcus marinus str. MIT... 79 2e-13
CP000083_3387(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 79 2e-13
CP000878_244(CP000878|pid:none) Prochlorococcus marinus str. MIT... 78 5e-13
CP000576_243(CP000576|pid:none) Prochlorococcus marinus str. MIT... 75 3e-12
BX569694_107(BX569694|pid:none) Synechococcus sp. WH8102 complet... 74 7e-12
AB177985_8(AB177985|pid:none) Sphingobium japonicum genes for pu... 70 2e-10
CP000554_397(CP000554|pid:none) Prochlorococcus marinus str. MIT... 68 6e-10
CT978603_1497(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 67 8e-10
BT062115_1(BT062115|pid:none) Zea mays full-length cDNA clone ZM... 54 1e-05
BA000030_1070(BA000030|pid:none) Streptomyces avermitilis MA-468... 50 1e-04
AP008208_1102(AP008208|pid:none) Oryza sativa (japonica cultivar... 48 7e-04
CT971583_2089(CT971583|pid:none) Synechococcus WH7803 complete g... 41 0.064
(O45405) RecName: Full=Chloride intracellular channel exl-1; Alt... 41 0.084
T21429(T21429)hypothetical protein F26H11.5 - Caenorhabditis ele... 41 0.084
FN357454_6(FN357454|pid:none) Schistosoma mansoni genome sequenc... 39 0.42
FN357454_5(FN357454|pid:none) Schistosoma mansoni genome sequenc... 39 0.42
(Q8DQN5) RecName: Full=Zinc metalloprotease zmpB; EC=3.... 36 2.1
AF325922_2(AF325922|pid:none) Takifugu rubripes omega class glut... 35 4.6
CP000356_125(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 35 6.0
BT079290_1(BT079290|pid:none) Esox lucius clone eluc-evq-501-312... 35 6.0
AY814257_1(AY814257|pid:none) Schistosoma japonicum SJCHGC02462 ... 34 7.9
AY814165_1(AY814165|pid:none) Schistosoma japonicum clone SJCHGC... 34 7.9
>FM178379_1201(FM178379|pid:none) Aliivibrio salmonicida LFI1238
chromosome 1 complete genome.
Length = 323
Score = 188 bits (478), Expect = 2e-46
Identities = 113/277 (40%), Positives = 151/277 (54%), Gaps = 3/277 (1%)
Frame = +3
Query: 102 DVEAGRYTLYLNNGCPFAHRTSIALGLKGLTDSIEVINSHFEFNDDGLWQFNGLDGTDFD 281
+ E+GRY LY++ CP+AHRT I LKGL D I + + DDG W F +G D
Sbjct: 49 NAESGRYHLYVSLACPWAHRTVIYRKLKGLEDMISMSVVNAFMGDDG-WTFEPGEGVIED 107
Query: 282 KNNGFKTIKELYTLSDPDYGEPARFTVPVLWDKKTKKIVSNESGDIVRIFSTQFNSIAKN 461
N E+YT + PDY R TVP+LWDKKT IVSNES +I+R+F++ F+ I
Sbjct: 108 TVNHATYAHEIYTKAAPDY--TGRVTVPILWDKKTNTIVSNESAEIIRMFNSAFDDIGAT 165
Query: 462 KDLNFRPDNLTTKIDE---FIDXXXXXXXXXXXXALDPQKYSETFDTVFATIEKLEKYLS 632
+L+F P++L IDE FI A Y + VF +E +E+ LS
Sbjct: 166 -ELDFSPEHLLNDIDELNAFIYPTINNGVYRAGFATTQAAYDDAVAEVFGALETVEQRLS 224
Query: 633 ENNTKYLFSDEITEADIKLFVVLIRFDVVISPAFRLNWKTTRDYANIFKYIRRLYQNPAI 812
+YL DEITEAD +LF LIRFD V F+ N K DY NI+ Y+R L+Q P +
Sbjct: 225 TQ--RYLIGDEITEADWRLFTTLIRFDAVYVGHFKCNLKRIVDYPNIWGYLRDLFQQPGV 282
Query: 813 KPTVNFHYIKGMYFLGKYSGYANKFIPKGPCMDYLNE 923
TVN YIK Y+ + IPKGP +D+ ++
Sbjct: 283 SETVNIDYIKAHYYGSHETINPTLIIPKGPALDFFSQ 319
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,321,949,339
Number of extensions: 24484638
Number of successful extensions: 64835
Number of sequences better than 10.0: 218
Number of HSP's gapped: 64315
Number of HSP's successfully gapped: 222
Length of query: 361
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 231
Effective length of database: 636,287,441
Effective search space: 146982398871
Effective search space used: 146982398871
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
3 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |