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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03456-1
Contig ID Contig-U03456-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03456-1 (Contig-U03456-1Q) /CSM_Contig/Contig-U03456-1Q.Seq.d
AGCAATGTCACCAANCTGTATTNAATCATANTCCACTNGTATTATTATTT
TNATTCANCCAATTAAAAATTTTGTTGGTAATAGTAGNACAACGATNGGT
ATTTCAAATGATGAAAATAGAGTAGTTGGTGAACAACCNTCACCATCCTT
AACAGCAACCACAACAACTACTACAACCACATCCCCAACAATCAATTCAA
ATTCTCCAACACCATCAAATAAAATTAAANATAGAGTTTCAATTTCNAAT
AGNGATGAAGTT
Gap no gap
Contig length 262
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5564759
End point 5564497
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U03456
List of clone(s) 

est1=SFC788Z,1,263
Translated Amino Acid sequence 
AMSPXCIXSXSTXIIIXIXPIKNFVGNSXTTXGISNDENRVVGEQPSPSLTATTTTTTTT
SPTINSNSPTPSNKIKXRVSISNXDEV
Translated Amino Acid sequence (All Frames) 
Frame A:
snvtxlyxiixhxyyyfxsxn*kfcw***xndxyfk**k*ssw*ttxtilnsnhnnyynh
ipnnqfkfsntik*n*x*sfnfx*x*s


Frame B:
AMSPXCIXSXSTXIIIXIXPIKNFVGNSXTTXGISNDENRVVGEQPSPSLTATTTTTTTT
SPTINSNSPTPSNKIKXRVSISNXDEV


Frame C:
qchqxvxnhxplvllfxfxqlkillvivxqrxvfqmmkie*lvnnxhhp*qqpqqllqph
pqqsiqilqhhqiklxiefqfxixmk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03456-1 (Contig-U03456-1Q)
/CSM_Contig/Contig-U03456-1Q.Seq.d
         (262 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03456-1 (Contig-U03456-1Q) /CSM_Contig/Conti...   448  e-126
Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Conti...    46  2e-05
Contig-U00906-1 (Contig-U00906-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U05561-1 (Contig-U05561-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti...    36  0.018

>Contig-U03456-1 (Contig-U03456-1Q) /CSM_Contig/Contig-U03456-1Q.Seq.d
          Length = 262

 Score =  448 bits (226), Expect = e-126
 Identities = 262/262 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaatgtcaccaanctgtattnaatcatantccactngtattattattttnattcancc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcaatgtcaccaanctgtattnaatcatantccactngtattattattttnattcancc 60

                                                                       
Query: 61  aattaaaaattttgttggtaatagtagnacaacgatnggtatttcaaatgatgaaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattaaaaattttgttggtaatagtagnacaacgatnggtatttcaaatgatgaaaatag 120

                                                                       
Query: 121 agtagttggtgaacaaccntcaccatccttaacagcaaccacaacaactactacaaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtagttggtgaacaaccntcaccatccttaacagcaaccacaacaactactacaaccac 180

                                                                       
Query: 181 atccccaacaatcaattcaaattctccaacaccatcaaataaaattaaanatagagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atccccaacaatcaattcaaattctccaacaccatcaaataaaattaaanatagagtttc 240

                                 
Query: 241 aatttcnaatagngatgaagtt 262
           ||||||||||||||||||||||
Sbjct: 241 aatttcnaatagngatgaagtt 262


>Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Contig-U14742-1Q.Seq.d
          Length = 1266

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 158  accacaacaactactacaaccac 180
            |||||||||||||||||||||||
Sbjct: 1085 accacaacaactactacaaccac 1107


>Contig-U00906-1 (Contig-U00906-1Q) /CSM_Contig/Contig-U00906-1Q.Seq.d
          Length = 2286

 Score = 44.1 bits (22), Expect = 7e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 156  caaccacaacaactactacaaccaca 181
            |||||||||||||||| |||||||||
Sbjct: 1400 caaccacaacaactacaacaaccaca 1425


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7733
Number of Sequences: 6905
Number of extensions: 7733
Number of successful extensions: 3427
Number of sequences better than 10.0: 379
length of query: 262
length of database: 5,674,871
effective HSP length: 15
effective length of query: 247
effective length of database: 5,571,296
effective search space: 1376110112
effective search space used: 1376110112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.31
Homology vs DNA 
Query= Contig-U03456-1 (Contig-U03456-1Q) /CSM_Contig/Contig-U03456-1Q.Seq.d
         (262 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ399674) Dictyostelium discoideum cDNA clone:dds6p21, 3' e...   448   e-122  1
(EY315273) CAWX25965.fwd CAWX Helobdella robusta Primary Ear...    54   0.003  1
(CD648172) AUF_102_A16_T7 Crassostrea virginica Gill Crassos...    50   0.041  1
(FF752895) XABT60866.fwd Gateway compatible cien cDNA librar...    50   0.041  1
(FF712762) XABT32673.fwd Gateway compatible cien cDNA librar...    50   0.041  1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    44   0.13   5
(BR000121) TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-120 mRNA ...    48   0.16   1
(AC181667) Strongylocentrotus purpuratus clone R3-10B15, WOR...    48   0.16   1
(AC180184) Strongylocentrotus purpuratus clone R3-4001O6, WO...    48   0.16   1
(CP000575) Staphylothermus marinus F1, complete genome.            48   0.16   1
(DL005655) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     32   0.36   2
(CS459580) Sequence 61 from Patent WO2006117596.                   32   0.36   2
(AP006345) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    32   0.36   2
(AC097722) Homo sapiens chromosome UNK clone RP11-186D19, WO...    32   0.36   2
(AP007215) Homo sapiens genomic DNA, chromosome 11 clone:CMF...    32   0.39   2
(DQ121036) Hucho taimen clone ZA-32 microsatellite sequence.       46   0.64   1
(BX649356) Zebrafish DNA sequence from clone CH211-209H5 in ...    46   0.64   1
(GM017008) Sequence 1838 from Patent EP1923464.                    46   0.64   1
(GM016639) Sequence 1469 from Patent EP1923464.                    46   0.64   1
(GM016257) Sequence 1087 from Patent EP1923464.                    46   0.64   1
(GM015893) Sequence 723 from Patent EP1923464.                     46   0.64   1
(GM015512) Sequence 342 from Patent EP1923464.                     46   0.64   1
(GM015171) Sequence 1 from Patent EP1923464.                       46   0.64   1
(AF414163) Lucilia illustris clone Li45 microsatellite seque...    46   0.64   1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    46   0.64   1
(EK472906) 1095469464292 Global-Ocean-Sampling_GS-32-01-01-1...    46   0.64   1
(EK451468) 1095467487968 Global-Ocean-Sampling_GS-32-01-01-1...    46   0.64   1
(EK040482) 1092959514460 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.64   1
(EK015038) 1092955226425 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.64   1
(EH284804) Q1_Reed_1DPH_cDNA_05_G19_295.F 1d_posthatch Melea...    46   0.64   1
(EG757865) EST_ssal_sjb_6484 ssalsjb mixed_tissue Salmo sala...    46   0.64   1
(CV647498) EST926251 Field isolate cDNA library Plasmodium v...    46   0.64   1
(CF542859) S014678w-024-030-O16-SP6 MPIZ-ADIS-024-leaf Beta ...    46   0.64   1
(BJ442390) Dictyostelium discoideum cDNA clone:ddv49p18, 3' ...    46   0.64   1
(BJ430512) Dictyostelium discoideum cDNA clone:ddv7c17, 3' e...    46   0.64   1
(EY361303) CAWZ7653.rev CAWZ Helobdella robusta Primary Late...    46   0.64   1
(EY344090) CAWZ12883.rev CAWZ Helobdella robusta Primary Lat...    46   0.64   1
(EY314524) CAWX25555.fwd CAWX Helobdella robusta Primary Ear...    46   0.64   1
(EY314389) CAWX25481.fwd CAWX Helobdella robusta Primary Ear...    46   0.64   1
(EY313834) CAWX25172.fwd CAWX Helobdella robusta Primary Ear...    46   0.64   1
(EY293575) CAWX11202.fwd CAWX Helobdella robusta Primary Ear...    46   0.64   1
(EY293181) CAWX10981.fwd CAWX Helobdella robusta Primary Ear...    46   0.64   1
(AP006878) Thermococcus kodakarensis KOD1 DNA, complete genome.    46   0.64   1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    44   1.5    5
(AR279260) Sequence 3 from patent US 6514697.                      34   1.6    2
(AR097041) Sequence 3 from patent US 6071518.                      34   1.6    2
(AR279261) Sequence 4 from patent US 6514697.                      34   1.6    2
(AR097042) Sequence 4 from patent US 6071518.                      34   1.6    2
(AJ389720) Aegilops speltoides partial GAG56 gene for gamma-...    32   1.7    2
(AJ389719) Aegilops speltoides partial GAG56 gene for gamma-...    32   1.7    2
(EY303416) CAWX16699.rev CAWX Helobdella robusta Primary Ear...    34   1.7    2
(BJ333571) Dictyostelium discoideum cDNA clone:dda43p02, 5' ...    34   1.8    2
(BQ246735) TaE15006C04R TaE15 Triticum aestivum cDNA clone T...    34   1.8    2
(AJ389695) Triticum spelta partial GAG56B gene for gamma-gli...    36   1.8    2
(AJ389697) Triticum spelta partial GAG56B gene for gamma-gli...    36   1.8    2
(AJ389701) Triticum durum partial GAG56B gene for gamma-glia...    36   1.8    2
(AJ389706) Triticum dicoccum partial GAG56B gene for gamma-g...    36   2.3    2
(AJ389702) Triticum durum partial GAG56B gene for gamma-glia...    36   2.3    2
(AJ389696) Triticum spelta partial GAG56B gene for gamma-gli...    36   2.3    2
(AJ389700) Triticum durum partial GAG56B gene for gamma-glia...    36   2.3    2
(AJ389699) Triticum durum partial GAG56B gene for gamma-glia...    36   2.3    2
(CR848810) Zebrafish DNA sequence from clone DKEYP-86E3 in l...    40   2.5    2
(AB086243) Coryphaenoides yaquinae mRNA for skeletal alpha-a...    44   2.5    1
(AB086241) Coryphaenoides armatus mRNA for skeletal alpha-ac...    44   2.5    1
(Z75714) Caenorhabditis elegans Cosmid ZC434.                      44   2.5    1
(AY449461) Oikopleura dioica clone BACOIKO005 4xj24, complet...    44   2.5    1
(AY449459) Oikopleura dioica clone BACOIKO003 5xk14, complet...    44   2.5    1
(AY191018) Dictyostelium discoideum autophagy protein 4 (apg...    44   2.5    1
(AY144625) Helobdella robusta hairy and enhancer of split (h...    44   2.5    1
(AC148354) Sorex araneus clone SA_Ba-332A6, WORKING DRAFT SE...    44   2.5    1
(AQ450378) 500011A11.x2 CpIOWAM13mp18gDNA1 Cryptosporidium p...    44   2.5    1
(ER720989) SB_BBc04-K13.R SB_BBc Sorghum bicolor genomic 3',...    44   2.5    1
(EK307666) 1095462386462 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.5    1
(EJ962635) 1093022015104 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.5    1
(EJ923364) 1093018770757 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.5    1
(EJ471927) 1095403415110 Global-Ocean-Sampling_GS-28-01-01-1...    44   2.5    1
(AL196391) Tetraodon nigroviridis genome survey sequence T7 ...    44   2.5    1
(CL530689) trib002xh16.g6 T. reesei HindIII BAC library Hypo...    44   2.5    1
(CG898233) pastbac066xb17.b1.ab1 Res147 1 Pasteuria penetran...    44   2.5    1
(CG897330) pastbac049xe11.b1.ab1 Res147 1 Pasteuria penetran...    44   2.5    1
(CG896500) pastbac026xc21.b1.ab1 Res147 1 Pasteuria penetran...    44   2.5    1
(EL572858) Physarum03211 Physarum polycephalum starvation st...    44   2.5    1
(EB613809) AGENCOURT_54968024 D. mojavensis EST Drosophila m...    44   2.5    1
(DR077308) Lr_Cd2CF_61D07_M13R Earthworm Cadmium Exposure Li...    44   2.5    1
(DK288520) Drosophila auraria mRNA, adult full-length cDNA c...    44   2.5    1
(DK285092) Drosophila auraria mRNA, adult full-length cDNA c...    44   2.5    1
(DC618774) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    44   2.5    1
(DC614203) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    44   2.5    1
(BW670811) Glycine max cDNA clone: GMFL01-32-F19, 5'end.           44   2.5    1
(BJ411383) Dictyostelium discoideum cDNA clone:ddv4n06, 5' e...    44   2.5    1
(FK922852) EST_lsal_evj_961293 lsalevj mixed_tissue_mixed_st...    44   2.5    1
(FK151524) XABT180805.b1 Gateway compatible cien cDNA librar...    44   2.5    1
(FF695619) XABT106655.fwd Gateway compatible cien cDNA libra...    44   2.5    1
(EY329410) CAWY2702.fwd CAWY Helobdella robusta Subtracted E...    44   2.5    1
(GO107426) CAFZ7523.rev CAFZ Alvinella pompejana Incyte regu...    34   2.5    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    38   2.6    7
(FB571360) Sequence 227 from Patent EP1865317.                     32   4.7    2
(EJ469766) 1095403403404 Global-Ocean-Sampling_GS-28-01-01-1...    32   5.2    3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    36   5.2    4
(AC133075) Pan troglodytes clone RP43-76I20, WORKING DRAFT S...    40   5.7    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   6.4    7
(FC521568) CBFU4694.fwd CBFU Thalassiosira pseudonana Iron l...    30   6.4    2
(FC521567) CBFU4694.rev CBFU Thalassiosira pseudonana Iron l...    30   6.4    2
(DD391829) Method and nucleic acids for the improved treatme...    38   6.4    2
(DD209188) test.                                                   38   6.4    2
(CQ807085) Sequence 535 from Patent WO2004035803.                  38   6.4    2
(CQ787442) Sequence 292 from Patent WO2004020662.                  38   6.4    2
(AX826025) Sequence 277 from Patent WO03072821.                    38   6.4    2
(AX822385) Sequence 277 from Patent EP1340818.                     38   6.4    2
(AX795865) Sequence 208 from Patent WO03052135.                    38   6.4    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   6.8    6
(AC215480) Solanum lycopersicum chromosome 2 clone C02SLm005...    42   7.1    3
(AL353631) Human DNA sequence from clone RP11-5N16 on chromo...    36   7.7    4
(AF068065) Cryptosporidium parvum GP900 gene, complete cds.        32   7.9    3
(AR279259) Sequence 2 from patent US 6514697.                      32   8.0    3
(AR097040) Sequence 2 from patent US 6071518.                      32   8.0    3
(AC020360) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    40   8.4    2
(AC130969) Rattus norvegicus 2 BAC CH230-105B13 (Children's ...    40   9.7    3
(CR854987) Zebrafish DNA sequence from clone CH211-185J22 in...    42   9.9    1
(CR762429) Zebrafish DNA sequence from clone CH211-172J10 in...    42   9.9    1
(BX119908) Zebrafish DNA sequence from clone CH211-225A3 in ...    42   9.9    1
(BX004837) Zebrafish DNA sequence from clone CH211-134F7 in ...    42   9.9    1
(AJ633646) Dicentrarchus labrax mRNA for nuclear receptor su...    42   9.9    1
(AC147968) Gallus gallus BAC clone CH261-119F24 from chromos...    42   9.9    1
(BV243287) S234P6134FE2.T0 EnglishShepherd Canis familiaris ...    42   9.9    1
(AE008684) Mus musculus T-cell receptor alpha/delta locus  s...    42   9.9    1
(AC147639) Mus musculus BAC clone RP23-115M6 from 13, comple...    42   9.9    1
(AC126678) Mus musculus BAC clone RP24-231D7 from chromosome...    42   9.9    1
(AC113749) Rattus norvegicus  BAC CH230-185P21 () complete s...    42   9.9    1
(AC109023) Rattus norvegicus  BAC CH230-273D21 (Children's H...    42   9.9    1
(AC004407) Mus musculus mbac6, complete sequence.                  42   9.9    1
(BX284763) Neurospora crassa DNA linkage group II BAC contig...    42   9.9    1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    42   9.9    1
(AM426455) Vitis vinifera contig VV78X192254.4, whole genome...    42   9.9    1
(AC215458) Solanum lycopersicum chromosome 2 clone C02SLe007...    42   9.9    1
(DL173185) Methods for Identifying the Target of a Compound ...    42   9.9    1
(DJ380755) Gene Disruption Methodologies for Drug Target Dis...    42   9.9    1
(DI052121) Gene Disruption Methodologies for Drug Target Dis...    42   9.9    1
(CQ603165) Sequence 30923 from Patent WO0171042.                   42   9.9    1
(CQ603164) Sequence 30922 from Patent WO0171042.                   42   9.9    1
(CQ585437) Sequence 13195 from Patent WO0171042.                   42   9.9    1
(AX488745) Sequence 6045 from Patent WO02053728.                   42   9.9    1
(AX240769) Sequence 7 from Patent WO0160975.                       42   9.9    1
(AR578923) Sequence 7 from patent US 6783985.                      42   9.9    1
(AR509810) Sequence 14770 from patent US 6703491.                  42   9.9    1
(AY449458) Oikopleura dioica clone BACOIKO002 4xj18, complet...    42   9.9    1
(AY061201) Drosophila melanogaster LD15563 full length cDNA.       42   9.9    1
(AM910987) Plasmodium knowlesi strain H chromosome 5, comple...    42   9.9    1
(AF016448) Caenorhabditis elegans cosmid F41E6, complete seq...    42   9.9    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    42   9.9    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    42   9.9    1
(AC091634) Drosophila melanogaster, chromosome 2R, region 50...    42   9.9    1
(AC008367) Drosophila melanogaster clone BACR10P10, complete...    42   9.9    1
(AC008284) Drosophila melanogaster clone BACR03M22, complete...    42   9.9    1
(AC007329) Drosophila melanogaster, chromosome 2R, region 50...    42   9.9    1
(AC151863) Colobus guereza clone CH272-119O16, WORKING DRAFT...    42   9.9    1
(AC127140) Rattus norvegicus clone CH230-26B20, WORKING DRAF...    42   9.9    1
(AC119665) Rattus norvegicus clone CH230-276L4, WORKING DRAF...    42   9.9    1
(AC114372) Rattus norvegicus clone CH230-274O11, *** SEQUENC...    42   9.9    1
(AC099382) Rattus norvegicus clone CH230-69I14, *** SEQUENCI...    42   9.9    1
(AC099355) Rattus norvegicus clone CH230-10K20, WORKING DRAF...    42   9.9    1
(AC099293) Rattus norvegicus clone CH230-21G9, WORKING DRAFT...    42   9.9    1
(FP102291) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.9    1
(EF647615) Solanum lycopersicum chromosome 9 clone C09SLm010...    42   9.9    1
(CU468272) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.9    1
(AC211078) Solanum lycopersicum chromosome 6 clone C06HBa030...    42   9.9    1
(AC211070) Solanum lycopersicum chromosome 6 clone C06HBa029...    42   9.9    1
(AC019844) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   9.9    1
(AZ981448) 2M0258E22R Mouse 10kb plasmid UUGC2M library Mus ...    42   9.9    1
(ET670171) MUGQ_CH252P461L20Sp6_CH0124_070 CHORI-252 Vervet ...    42   9.9    1
(ET427566) MUGQ_CH252P423E21T7_CP810_091 CHORI-252 Vervet Mo...    42   9.9    1
(ER336656) 1092344312156 Global-Ocean-Sampling_GS-34-01-01-1...    42   9.9    1
(EK844322) 1093017717577 Global-Ocean-Sampling_GS-33-01-01-1...    42   9.9    1
(EK377454) 1095469446220 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.9    1
(DH261857) Oryzias latipes Fosmid clone:GOLWFno586_i08, forw...    42   9.9    1
(CZ976433) 178315 Tomato MboI BAC Library Solanum lycopersic...    42   9.9    1
(CZ960726) 306443 Tomato EcoRI BAC Library Solanum lycopersi...    42   9.9    1
(CZ932240) 252351 Tomato EcoRI BAC Library Solanum lycopersi...    42   9.9    1
(CZ566996) p_bW013RH02Q_L13_053 WAG Gallus gallus genomic cl...    42   9.9    1
(CW874098) she2h42-40.b_079.ab1 Whole-genome shotgun library...    42   9.9    1
(CW421578) fsbb001f130h12f0 Sorghum methylation filtered lib...    42   9.9    1
(CW142401) 104_533_11136836_148_34941_068 Sorghum methylatio...    42   9.9    1
(CW142400) 104_533_11136836_116_34937_068 Sorghum methylatio...    42   9.9    1
(CL530645) trib002xh16.g5 T. reesei HindIII BAC library Hypo...    42   9.9    1
(CE305297) tigr-gss-dog-17000360532018 Dog Library Canis lup...    42   9.9    1
(CC820599) SSH_RfFD1_01_164 Ruminococcus flavefaciens FD-1 s...    42   9.9    1
(CC250871) CH261-17B5_RM1.1 CH261 Gallus gallus genomic clon...    42   9.9    1
(B67199) CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic...    42   9.9    1
(BH965463) odd47a11.b1 B.oleracea002 Brassica oleracea genom...    42   9.9    1
(EH755050) CNSL1418.b1_C20.ab1 CNS(LMS) yellow starthistle C...    42   9.9    1
(EC249146) 371900 CK01 Drosophila melanogaster cDNA clone 14...    42   9.9    1
(EC220721) 150981 CK01 Drosophila melanogaster cDNA clone 89...    42   9.9    1
(EC200993) 316893 CK01 Drosophila melanogaster cDNA clone 69...    42   9.9    1
(EC090386) 445611 CK01 Drosophila melanogaster cDNA clone 19...    42   9.9    1
(EB635615) AGENCOURT_56977142 D. grimshawi EST Drosophila gr...    42   9.9    1
(EB553418) AGENCOURT_52937211 D. erecta EST Drosophila erect...    42   9.9    1
(EB061983) StheSEQ8831 Sporotrichum thermophile pBluescript ...    42   9.9    1
(EB056179) StheSEQ1727 Sporotrichum thermophile pBluescript ...    42   9.9    1
(EB056082) StheSEQ1611 Sporotrichum thermophile pBluescript ...    42   9.9    1
(EB054312) StheSEQ1366 Sporotrichum thermophile pBluescript ...    42   9.9    1
(DY924560) CHAY7667.b1_F22.ab1 CHA(XYZ) common wild sunflowe...    42   9.9    1
(DY914515) CHAY10011.b1_E07.ab1 CHA(XYZ) common wild sunflow...    42   9.9    1
(DY891605) CeleSEQ10337 Cunninghamella elegans pBluescript (...    42   9.9    1
(AU263331) Dictyostelium discoideum vegetative cDNA clone:VS...    42   9.9    1
(AU261918) Dictyostelium discoideum vegetative cDNA clone:VS...    42   9.9    1
(DN733416) CNB69-H10.y1d-s SHGC-CNB Gasterosteus aculeatus c...    42   9.9    1
(DC618491) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    42   9.9    1
(DC616775) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    42   9.9    1
(AM744150) Teladorsagia circumcincta EST, clone Tci_L4_01_03...    42   9.9    1
(CU555691) Spc_26YI16 cDNA clone of Developmental Stages Lib...    42   9.9    1
(CO654062) cammoP020C02 cammo Biomphalaria glabrata cDNA clo...    42   9.9    1
(CO330777) EK296147.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    42   9.9    1
(CO306091) EK250240.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    42   9.9    1
(CO272921) EK108826.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    42   9.9    1
(CK313726) SB02038B1C08.f1 normalized Keck-Tagu Library SB02...    42   9.9    1
(AI513629) LD45831.5prime LD Drosophila melanogaster embryo ...    42   9.9    1
(AI512185) LD43942.5prime LD Drosophila melanogaster embryo ...    42   9.9    1
(BJ435393) Dictyostelium discoideum cDNA clone:ddv27b01, 3' ...    42   9.9    1
(BJ431273) Dictyostelium discoideum cDNA clone:ddv13e17, 3' ...    42   9.9    1
(BJ431121) Dictyostelium discoideum cDNA clone:ddv9n24, 3' e...    42   9.9    1
(BJ428911) Dictyostelium discoideum cDNA clone:ddv1n13, 3' e...    42   9.9    1
(BJ374668) Dictyostelium discoideum cDNA clone:ddc9a19, 3' e...    42   9.9    1
(BJ343961) Dictyostelium discoideum cDNA clone:dda17a24, 3' ...    42   9.9    1
(BJ332400) Dictyostelium discoideum cDNA clone:dda39a02, 5' ...    42   9.9    1
(BI521713) 603081654R1 NIH_MGC_120 Homo sapiens cDNA clone I...    42   9.9    1
(BI486468) RE69895.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI486456) RE69883.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI484090) RE67123.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI481896) RE64513.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI367207) RE52918.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI362681) RE47304.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI240131) RE36780.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI236573) RE32644.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI235853) RE31801.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI235756) RE31677.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI235728) RE31647.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI235451) RE31293.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI235390) RE31230.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI232830) RE28953.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI230792) RE15235.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI213038) RE18343.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI172758) RE15429.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI168107) RE08657.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI167344) RE07709.5prime RE Drosophila melanogaster normali...    42   9.9    1
(BI162999) RE02286.5prime RE Drosophila melanogaster normali...    42   9.9    1
(GH717244) sshn00535 Biomphalaria glabrata susceptible snail...    42   9.9    1
(GH717202) sshn00493 Biomphalaria glabrata susceptible snail...    42   9.9    1
(GH717125) sshn00416 Biomphalaria glabrata susceptible snail...    42   9.9    1
(GH405236) G872P511RJ15.T0 C. posadasii Silveira, MYCELIAL_N...    42   9.9    1
(GH066710) G992P132RH8.T0 Neurospora crassa cDNA - 1 hour He...    42   9.9    1
(GH025919) G1220P162RN23.T0 Neurospora crassa cDNA - 1 hour ...    42   9.9    1
(FK915583) EST_lsal_evj_956396 lsalevj mixed_tissue_mixed_st...    42   9.9    1
(FK915582) EST_lsal_evj_932204 lsalevj mixed_tissue_mixed_st...    42   9.9    1
(FK913446) EST_lsal_evj_934552 lsalevj mixed_tissue_mixed_st...    42   9.9    1
(FK913445) EST_lsal_evj_949528 lsalevj mixed_tissue_mixed_st...    42   9.9    1
(FG869525) UCRVU07_CCNP6134_b5 Cowpea UCR 779 Mixed Tissue a...    42   9.9    1
(FF579543) Fernando_27_H10 Drosophila gastrula substracted c...    42   9.9    1
(FF579377) Elena_26_A08 Drosophila gastrula substracted cDNA...    42   9.9    1
(FF579296) Diego_25_B01 Drosophila gastrula substracted cDNA...    42   9.9    1
(FF579246) Cauquenes_24_E04 Drosophila gastrula substracted ...    42   9.9    1
(FF579221) Cauquenes_24_C01 Drosophila gastrula substracted ...    42   9.9    1
(FF579164) Batuco_16_E02 Drosophila gastrula substracted cDN...    42   9.9    1
(FE787605) CCAG15632.b7 CCAG Petrolisthes cinctipes heart, g...    42   9.9    1
(FD718013) CAAA3146.fwd CAAA Petromyzon marinus Petromyzon m...    42   9.9    1
(FD481016) NADI-aaa30h10.g1 Rhodnius_prolixus_EST_NADI_5th_i...    42   9.9    1
(FD291648) CBFA31736.g1 CBFA: Normalized cDNA library made f...    42   9.9    1
(FC857064) CAMHEP425g08 CAMHE Biomphalaria glabrata cDNA clo...    42   9.9    1
(FC513338) CBFS4172.fwd CBFS Thalassiosira pseudonana silica...    42   9.9    1
(EY385726) CAXA5844.fwd CAXA Helobdella robusta Subtracted L...    42   9.9    1
(ES491384) HP00089 Biomphalaria glabrata resistant snail (BS...    42   9.9    1
(AA440699) LD15563.5prime LD Drosophila melanogaster embryo ...    42   9.9    1
(AA440665) LD15522.5prime LD Drosophila melanogaster embryo ...    42   9.9    1
(AA202883) LD03234.5prime LD Drosophila melanogaster embryo ...    42   9.9    1
(CP000813) Bacillus pumilus SAFR-032, complete genome.             42   9.9    1
(AY607845) Edwardsiella ictaluri arginine decarboxylase, arg...    42   9.9    1

>(BJ399674) Dictyostelium discoideum cDNA clone:dds6p21, 3' end,
           single read.
          Length = 263

 Score =  448 bits (226), Expect = e-122
 Identities = 262/262 (100%)
 Strand = Plus / Minus


Query: 1   agcaatgtcaccaanctgtattnaatcatantccactngtattattattttnattcancc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agcaatgtcaccaanctgtattnaatcatantccactngtattattattttnattcancc 204


Query: 61  aattaaaaattttgttggtaatagtagnacaacgatnggtatttcaaatgatgaaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aattaaaaattttgttggtaatagtagnacaacgatnggtatttcaaatgatgaaaatag 144


Query: 121 agtagttggtgaacaaccntcaccatccttaacagcaaccacaacaactactacaaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 agtagttggtgaacaaccntcaccatccttaacagcaaccacaacaactactacaaccac 84


Query: 181 atccccaacaatcaattcaaattctccaacaccatcaaataaaattaaanatagagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  atccccaacaatcaattcaaattctccaacaccatcaaataaaattaaanatagagtttc 24


Query: 241 aatttcnaatagngatgaagtt 262
           ||||||||||||||||||||||
Sbjct: 23  aatttcnaatagngatgaagtt 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 283,149,046
Number of extensions: 20202131
Number of successful extensions: 1842655
Number of sequences better than 10.0: 283
Length of query: 262
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 239
Effective length of database: 99,442,330,388
Effective search space: 23766716962732
Effective search space used: 23766716962732
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.28
Homology vs Protein 
Query= Contig-U03456-1 (Contig-U03456-1Q) /CSM_Contig/Contig-U03456-1Q.Seq.d
         (262 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SS8) RecName: Full=RapA guanosine triphosphatase-activating ...    69   5e-11

>(Q54SS8) RecName: Full=RapA guanosine triphosphatase-activating
           protein B;
          Length = 418

 Score = 68.9 bits (167), Expect = 5e-11
 Identities = 42/86 (48%), Positives = 42/86 (48%)
 Frame = +2

Query: 5   MSPXCIXSXSTXXXXXXXXXKNFVGNSXTTXGISNDENRVVGEQXXXXXXXXXXXXXXXX 184
           MSP CI S ST         KNFVGNS TT GISNDENRVVGEQ
Sbjct: 267 MSPNCIKSKSTQIIILIQPIKNFVGNSKTTIGISNDENRVVGEQPSPSLTTTTTTTTTTS 326

Query: 185 XXXXXXXXXXXXKIKXRVSISNXDEV 262
                       KIK RVSISN DEV
Sbjct: 327 PTINSNSPTPSNKIKYRVSISNRDEV 352

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 164,765,993
Number of extensions: 1494030
Number of successful extensions: 1351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 1
Length of query: 87
Length of database: 1,061,185,681
Length adjustment: 57
Effective length of query: 30
Effective length of database: 874,884,145
Effective search space: 26246524350
Effective search space used: 26246524350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.91  gvh: 0.44  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03456-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0