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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03444-1
Contig ID Contig-U03444-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Contig-U03444-1Q.Seq.d
AAAATGATTGTTTATTATTAAATTATAAAACTAATGAATGACTGTAGTCC
TATCATTTTTATTTGTTTTTATATATTCTTGTTTTATAATGATTTAAAAC
ACCTTTCTATTATTTTTATACTCTAGCAATTTCTTTTATTTTAAAATAAC
AAGAAAAAAAAAAGAAAAGTTNATTTTTATTTTTTTTATTTTTTTTTTTA
NANCAGTTTNTAAATTTTAAANCAAANT
Gap no gap
Contig length 228
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3603970
End point 3603825
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U03444
List of clone(s) 

est1=SFC642F,1,229
Translated Amino Acid sequence 
k*lfiikl*n**mtvvlsflfvfiyscfimi*NTFLLFLYSSNFFYFKITRKKKEKXIFI
FFIFFFXXVXKF*xk
Translated Amino Acid sequence (All Frames) 
Frame A:
kmivyy*iiklmndcspiificfyiflfyndlkhlsiifil*qfllf*nnkkkkrkvxfy
ffyfffxxsx*ilxqx


Frame B:
k*lfiikl*n**mtvvlsflfvfiyscfimi*NTFLLFLYSSNFFYFKITRKKKEKXIFI
FFIFFFXXVXKF*xk


Frame C:
ndclllnyktne*l*syhfylflyilvl**fktpfyyfytlaisfilk*qekkkksxflf
flffflxqfxnfkxx
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03444-1 (Contig-U03444-1Q)
/CSM_Contig/Contig-U03444-1Q.Seq.d
         (228 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Conti...   303  4e-83
Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Conti...    42  2e-04
Contig-U12969-1 (Contig-U12969-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U11701-1 (Contig-U11701-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U13662-1 (Contig-U13662-1Q) /CSM_Contig/Conti...    36  0.015
Contig-U12544-1 (Contig-U12544-1Q) /CSM_Contig/Conti...    36  0.015
Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Conti...    36  0.015
Contig-U11837-1 (Contig-U11837-1Q) /CSM_Contig/Conti...    36  0.015

>Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Contig-U03444-1Q.Seq.d
          Length = 228

 Score =  303 bits (153), Expect = 4e-83
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgattgtttattattaaattataaaactaatgaatgactgtagtcctatcattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaatgattgtttattattaaattataaaactaatgaatgactgtagtcctatcattttt 60

                                                                       
Query: 61  atttgtttttatatattcttgttttataatgatttaaaacacctttctattatttttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttgtttttatatattcttgttttataatgatttaaaacacctttctattatttttata 120

                                            
Query: 121 ctctagcaatttcttttattttaaaataacaag 153
           |||||||||||||||||||||||||||||||||
Sbjct: 121 ctctagcaatttcttttattttaaaataacaag 153


 Score = 34.2 bits (17), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 204 cagtttntaaattttaaancaaa 226
           |||||||||||||||||||||||
Sbjct: 204 cagtttntaaattttaaancaaa 226


 Score = 28.2 bits (14), Expect = 3.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 136 ttattttaaaataa 149
           ||||||||||||||
Sbjct: 149 ttattttaaaataa 136


>Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Contig-U12593-1Q.Seq.d
          Length = 1712

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 57  ttttatttgtttttatatattcttgtttt 85
           |||||||||||||| |||||| |||||||
Sbjct: 232 ttttatttgtttttttatatttttgtttt 204


>Contig-U12969-1 (Contig-U12969-1Q) /CSM_Contig/Contig-U12969-1Q.Seq.d
          Length = 196

 Score = 38.2 bits (19), Expect = 0.004
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 58 tttatttgtttttatatat 76
          |||||||||||||||||||
Sbjct: 57 tttatttgtttttatatat 39


 Score = 28.2 bits (14), Expect = 3.7
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 128 aatttcttttattttaaa 145
           ||||| ||||||||||||
Sbjct: 12  aatttattttattttaaa 29


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7893
Number of Sequences: 6905
Number of extensions: 7893
Number of successful extensions: 3217
Number of sequences better than 10.0: 435
length of query: 228
length of database: 5,674,871
effective HSP length: 15
effective length of query: 213
effective length of database: 5,571,296
effective search space: 1186686048
effective search space used: 1186686048
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.31
Homology vs DNA 
Query= Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Contig-U03444-1Q.Seq.d
         (228 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ388581) Dictyostelium discoideum cDNA clone:dds6c12, 5' e...   107   3e-37  3
(AM459570) Vitis vinifera contig VV78X023397.7, whole genome...    44   0.010  2
(DX448205) BE2010_C16_F IASMA L2 HindIII BAC library Vitis v...    48   0.14   1
(CU831489) A BAC library has been constructed from PN40024 g...    48   0.14   1
(CU856596) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.18   4
(AM447635) Vitis vinifera contig VV78X220673.29, whole genom...    44   0.26   2
(CT817396) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   0.47   2
(AM450315) Vitis vinifera contig VV78X043499.12, whole genom...    46   0.55   1
(CT553115) A BAC library has been constructed from cultivar ...    46   0.55   1
(BI506632) BB170028B20F05.5 Bee Brain Normalized/Subtracted ...    36   1.5    2
(EW988582) LJGFM-P03_A02 Adult female Lutzomyia longipalpis ...    34   1.6    2
(EW996114) LJGUM-P02_D01 Adult female Lutzomyia longipalpis ...    34   1.6    2
(EW995334) LJGUL-P01_H07 Adult female Lutzomyia longipalpis ...    34   1.6    2
(EW987596) LJGF-L-5_G10 Adult female Lutzomyia longipalpis m...    34   1.6    2
(CT637382) Danio rerio EST, clone ZF_mu_72b02 3'.                  36   1.8    2
(EJ507560) 1095407012450 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.8    2
(EW987300) LJGFL_P03_A06 Adult female Lutzomyia longipalpis ...    34   1.9    2
(AP004945) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   1.9    3
(AL607127) Mouse DNA sequence from clone RP23-196B19 on chro...    36   1.9    2
(AM090179) Lutzomyia longipalpis EST clone SFM-03b11, sequen...    34   2.0    2
(AM090176) Lutzomyia longipalpis EST clone NSFM-02a02, seque...    34   2.0    2
(AM090177) Lutzomyia longipalpis EST clone NSFM-02a02, seque...    34   2.0    2
(AM488665) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM488392) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM488339) Vitis vinifera contig VV78X115813.9, whole genome...    44   2.2    1
(AM487038) Vitis vinifera contig VV78X081504.11, whole genom...    44   2.2    1
(AM485591) Vitis vinifera contig VV78X161125.24, whole genom...    44   2.2    1
(AM485335) Vitis vinifera contig VV78X113414.6, whole genome...    44   2.2    1
(AM484804) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM484782) Vitis vinifera contig VV78X022872.8, whole genome...    44   2.2    1
(AM481200) Vitis vinifera contig VV78X058497.2, whole genome...    44   2.2    1
(AM479661) Vitis vinifera contig VV78X057311.10, whole genom...    44   2.2    1
(AM478213) Vitis vinifera contig VV78X250433.3, whole genome...    44   2.2    1
(AM477209) Vitis vinifera contig VV78X102358.4, whole genome...    44   2.2    1
(AM476958) Vitis vinifera contig VV78X110194.9, whole genome...    44   2.2    1
(AM476824) Vitis vinifera contig VV78X066810.11, whole genom...    44   2.2    1
(AM475652) Vitis vinifera contig VV79X000412.3, whole genome...    44   2.2    1
(AM475112) Vitis vinifera contig VV78X100239.16, whole genom...    44   2.2    1
(AM474905) Vitis vinifera contig VV78X205804.2, whole genome...    44   2.2    1
(AM474515) Vitis vinifera contig VV78X177830.4, whole genome...    44   2.2    1
(AM474458) Vitis vinifera contig VV78X192464.4, whole genome...    44   2.2    1
(AM473183) Vitis vinifera contig VV78X188472.7, whole genome...    44   2.2    1
(AM470960) Vitis vinifera contig VV78X125379.4, whole genome...    44   2.2    1
(AM470626) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM469162) Vitis vinifera contig VV78X167861.3, whole genome...    44   2.2    1
(AM466450) Vitis vinifera contig VV78X136575.15, whole genom...    44   2.2    1
(AM464707) Vitis vinifera contig VV78X135745.9, whole genome...    44   2.2    1
(AM464682) Vitis vinifera contig VV78X251018.5, whole genome...    44   2.2    1
(AM464541) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM464368) Vitis vinifera contig VV78X007990.11, whole genom...    44   2.2    1
(AM463812) Vitis vinifera contig VV78X036665.8, whole genome...    44   2.2    1
(AM463811) Vitis vinifera contig VV78X237259.49, whole genom...    44   2.2    1
(AM460722) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM459583) Vitis vinifera contig VV78X182805.4, whole genome...    44   2.2    1
(AM457510) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM457412) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM456317) Vitis vinifera contig VV78X059758.7, whole genome...    44   2.2    1
(AM455801) Vitis vinifera contig VV78X242356.55, whole genom...    44   2.2    1
(AM455777) Vitis vinifera contig VV78X068013.6, whole genome...    44   2.2    1
(AM451655) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM448678) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM445624) Vitis vinifera contig VV78X163239.8, whole genome...    44   2.2    1
(AM445107) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM440586) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM438796) Vitis vinifera contig VV78X092729.5, whole genome...    44   2.2    1
(AM437791) Vitis vinifera contig VV78X011639.9, whole genome...    44   2.2    1
(AM434084) Vitis vinifera contig VV78X093462.12, whole genom...    44   2.2    1
(AM433165) Vitis vinifera contig VV78X056266.4, whole genome...    44   2.2    1
(AM432353) Vitis vinifera contig VV78X033234.2, whole genome...    44   2.2    1
(AM432077) Vitis vinifera, whole genome shotgun sequence, co...    44   2.2    1
(AM431659) Vitis vinifera contig VV78X202679.6, whole genome...    44   2.2    1
(AM430240) Vitis vinifera contig VV78X066936.6, whole genome...    44   2.2    1
(AM425184) Vitis vinifera contig VV78X154285.7, whole genome...    44   2.2    1
(AM424592) Vitis vinifera contig VV78X129275.3, whole genome...    44   2.2    1
(AM423957) Vitis vinifera contig VV78X137693.21, whole genom...    44   2.2    1
(AM423747) Vitis vinifera contig VV78X006412.5, whole genome...    44   2.2    1
(AC209042) Populus trichocarpa clone POP052-O09, complete se...    44   2.2    1
(AX345244) Sequence 315 from Patent WO0200928.                     44   2.2    1
(AF482387) Dictyostelium discoideum ABC transporter AbcG12 (...    44   2.2    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   2.2    1
(AC098406) Rattus norvegicus clone CH230-2C4, *** SEQUENCING...    44   2.2    1
(CU469328) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.2    1
(AC170560) Bos taurus clone CH240-221L6, WORKING DRAFT SEQUE...    44   2.2    1
(AC169928) Bos taurus clone CH240-223O19, WORKING DRAFT SEQU...    44   2.2    1
(AC169598) Bos taurus clone CH240-173B8, WORKING DRAFT SEQUE...    44   2.2    1
(FH443624) CHO_OF4636xn22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   2.2    1
(FH443523) CHO_OF4636xn21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   2.2    1
(FH443444) CHO_OF4636xn21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   2.2    1
(FH283420) CHO_OF4164xp10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   2.2    1
(EK182199) 1095458128046 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.2    1
(ED061889) AUAC-aaz19h02.g1 Ascaris suum whole genome shotgu...    44   2.2    1
(DX450344) BE2002_C06_R IASMA L2 HindIII BAC library Vitis v...    44   2.2    1
(DX448709) BE2017_C01_R IASMA L2 HindIII BAC library Vitis v...    44   2.2    1
(DX433231) BE1074_M16_R IASMA L1 HindIII BAC library Vitis v...    44   2.2    1
(DX431008) BE1100_G11_F IASMA L1 HindIII BAC library Vitis v...    44   2.2    1
(DX427311) BE1070_D08_F IASMA L1 HindIII BAC library Vitis v...    44   2.2    1
(DU346383) 1098313109787 CHORI-243 Ovis aries genomic clone ...    44   2.2    1
(DH336812) Oryzias latipes Fosmid clone:GOLWFno704_k11, forw...    44   2.2    1
(DE542592) Bombyx mori genomic DNA, Fosmid clone:GBMFno173_d...    44   2.2    1
(CW173815) 104_585_11157053_148_36555_021 Sorghum methylatio...    44   2.2    1
(CW043860) 104_279_10508621_114_30273 Sorghum methylation fi...    44   2.2    1
(CU852247) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU850851) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU849570) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU849519) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU838874) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU833510) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU824168) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU823173) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU816983) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU816739) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU810169) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU803266) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU796859) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU793773) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU793194) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU782480) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU777761) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU776061) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU767722) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU764812) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU764054) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU763375) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CU744304) A BAC library has been constructed from PN40024 g...    44   2.2    1
(CT562894) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT557101) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT552905) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT542061) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT533333) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT525476) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT525275) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT520064) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT517783) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT505251) A BAC library has been constructed from cultivar ...    44   2.2    1
(CT502645) A BAC library has been constructed from cultivar ...    44   2.2    1
(EE144148) SiJWE11BDI2 Lausanne fire ant library Solenopsis ...    44   2.2    1
(BX548174) Prochlorococcus marinus MED4 complete genome.           44   2.2    1
(AP007376) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   2.2    3
(AM090199) Lutzomyia longipalpis EST clone SFM-02e10, sequen...    34   2.2    2
(AM090194) Lutzomyia longipalpis EST clone NSFM-103h05, sequ...    34   2.2    2
(AM090181) Lutzomyia longipalpis EST clone NSFM-64b05, seque...    34   2.3    2
(AM090189) Lutzomyia longipalpis EST clone NSFM-101g04, sequ...    34   2.3    2
(AM090198) Lutzomyia longipalpis EST clone NSFM-45g01, seque...    34   2.3    2
(AM090188) Lutzomyia longipalpis EST clone NSFM-04g01, seque...    34   2.3    2
(AM090183) Lutzomyia longipalpis EST clone NSFM-66b12, seque...    34   2.3    2
(AM090187) Lutzomyia longipalpis EST clone NSFM-73d10, seque...    34   2.3    2
(AM090182) Lutzomyia longipalpis EST clone NSFM-47h02, seque...    34   2.4    2
(AM090185) Lutzomyia longipalpis EST clone NSFM-89c06, seque...    34   2.4    2
(AM090192) Lutzomyia longipalpis EST clone NSFM-34b05, seque...    34   2.4    2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    38   2.5    5
(AM090178) Lutzomyia longipalpis EST clone NSFM-88a04, seque...    34   2.5    2
(AM090180) Lutzomyia longipalpis EST clone NSFM-41c04, seque...    34   2.5    2
(CD451832) USDA-FP_104146 Adult Alate Brown Citrus Aphid Tox...    34   2.9    2
(AF020776) Rattus norvegicus carnitine palmitoyltransferase ...    34   3.0    3
(AC161129) Pan troglodytes BAC clone CH251-332I16 from chrom...    42   3.8    3
(FB509232) Sequence 827 from Patent EP1961827.                     40   3.9    2
(FB508996) Sequence 591 from Patent EP1961827.                     40   3.9    2
(DL199976) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE...    40   3.9    2
(DL199740) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE...    40   3.9    2
(CS502716) Sequence 716 from Patent WO2007009755.                  40   3.9    2
(CS502394) Sequence 394 from Patent WO2007009755.                  40   3.9    2
(AC216007) Homo sapiens FOSMID clone ABC10-44679500L24 from ...    40   4.1    3
(AL590388) Mouse DNA sequence from clone RP23-480B19 on chro...    36   4.1    2
(EX633231) 256579642 Pea aphid whole body normalized full le...    36   4.3    2
(AL627315) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    36   4.6    2
(EK049381) 1092959676916 Global-Ocean-Sampling_GS-31-01-01-1...    34   7.0    2
(CU571083) Zebrafish DNA sequence from clone CH73-70K4 in li...    36   7.0    2
(BV683054) PtRIP_0080 microsatellite enriched libraries Pinu...    32   7.0    3
(AR534006) Sequence 253 from patent US 6733965.                    32   7.0    3
(FG291718) 1108793360170 New World Screwworm Egg 9261 ESTs C...    34   7.1    2
(AC232486) Brassica rapa subsp. pekinensis clone KBrB043N17,...    40   7.4    3
(AL133282) Human DNA sequence from clone RP11-264C15 on chro...    40   8.1    3
(AM455210) Vitis vinifera contig VV78X121003.8, whole genome...    40   8.5    2
(CR382384) Zebrafish DNA sequence from clone CH211-15B7 in l...    42   8.5    1
(BX000451) Zebrafish DNA sequence from clone CH211-30E10.          42   8.5    1
(BV258917) S235P6235FG12.T0 ItalianGreyhound Canis familiari...    42   8.5    1
(AC162390) Mus musculus 6 BAC RP23-233J7 (Roswell Park Cance...    42   8.5    1
(AC131909) Mus musculus chromosome 5, clone RP24-250G11, com...    42   8.5    1
(AC122340) Mus musculus BAC clone RP23-354B8 from 15, comple...    42   8.5    1
(AC103612) Mus musculus chromosome 5, clone RP24-455E13, com...    42   8.5    1
(AC213348) Pongo abelii BAC clone CH276-63G22 from chromosom...    42   8.5    1
(AC200635) Pongo abelii BAC clone CH276-118J12 from chromoso...    42   8.5    1
(AC200519) Pongo abelii BAC clone CH276-316G22 from chromoso...    42   8.5    1
(AC198094) Pongo abelii BAC clone CH276-117L23 from chromoso...    42   8.5    1
(AC161823) Pan troglodytes BAC clone CH251-142M23 from chrom...    42   8.5    1
(AC161284) Pan troglodytes BAC clone CH251-341A21 from chrom...    42   8.5    1
(AC160652) Pan troglodytes BAC clone CH251-490H15 from chrom...    42   8.5    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    42   8.5    1
(CU914131) Medicago truncatula chromosome 5 clone mth4-85a6,...    42   8.5    1
(CU914130) Medicago truncatula chromosome 5 clone mth4-73m1,...    42   8.5    1
(AM463628) Vitis vinifera contig VV78X048733.53, whole genom...    42   8.5    1
(AM451712) Vitis vinifera, whole genome shotgun sequence, co...    42   8.5    1
(AF175270) Benincasa hispida osmotin-like protein (olp) gene...    42   8.5    1
(AC185958) Glycine tomentella clone gtd1-181e18, complete se...    42   8.5    1
(EU875590) Branchiostoma floridae clone 63n5-43b24, complete...    42   8.5    1
(EU334573) Vanessa indica voucher jshao2007008 16S ribosomal...    42   8.5    1
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    42   8.5    1
(AL365232) Human DNA sequence from clone RP11-257K9 on chrom...    42   8.5    1
(AL356433) Human DNA sequence from clone RP11-453F1 on chrom...    42   8.5    1
(AC005181) Homo sapiens chromosome 17, clone hRPK.1003_J_3, ...    42   8.5    1
(AC002065) Homo sapiens BAC clone CTB-21N8 from 7, complete ...    42   8.5    1
(AC130684) Homo sapiens clone RP11-246G6, LOW-PASS SEQUENCE ...    42   8.5    1
(AC104156) Pan troglodytes clone RP43-134H9, WORKING DRAFT S...    42   8.5    1
(FP236276) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.5    1
(CU694632) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.5    1
(CU633569) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.5    1
(AC224625) Bos taurus clone CH240-480C10, WORKING DRAFT SEQU...    42   8.5    1
(AC224427) Bos taurus clone CH240-485A14, WORKING DRAFT SEQU...    42   8.5    1
(AC221067) Bos taurus clone CH240-407H4, WORKING DRAFT SEQUE...    42   8.5    1
(AC220135) Bos taurus clone CH240-363O15, WORKING DRAFT SEQU...    42   8.5    1
(AC209598) Chlorocebus aethiops clone CH252-275M1, WORKING D...    42   8.5    1
(AC209472) Chlorocebus aethiops clone CH252-317P4, WORKING D...    42   8.5    1
(AC203118) Nomascus leucogenys leucogenys clone CH271-240O17...    42   8.5    1
(AC202764) Nomascus leucogenys leucogenys clone CH271-372A15...    42   8.5    1
(AC201802) Zea mays chromosome 1 clone CH201-39J20; ZMMBBc00...    42   8.5    1
(AC197994) Colobus guereza clone CH272-26G9, WORKING DRAFT S...    42   8.5    1
(AC194539) Pan troglodytes chromosome 6 clone CH251-569H5, W...    42   8.5    1
(AC190009) Nomascus leucogenys leucogenys clone CH271-376C1,...    42   8.5    1
(AC189176) Colobus guereza clone CH272-289N6, WORKING DRAFT ...    42   8.5    1
(AC183719) Callicebus moloch clone LB5-269L21, WORKING DRAFT...    42   8.5    1
(AC183465) Callicebus moloch clone LB5-396F17, WORKING DRAFT...    42   8.5    1
(AC183333) Aotus nancymaae clone CH258-221G21, WORKING DRAFT...    42   8.5    1
(AC182986) Bos taurus clone CH240-188G1, WORKING DRAFT SEQUE...    42   8.5    1
(AC179865) Strongylocentrotus purpuratus clone R3-1007C7, WO...    42   8.5    1
(AC175088) Glycine tomentella clone gtt1-30c23, WORKING DRAF...    42   8.5    1
(AC174791) Glycine tomentella clone gtd1-6a2, WORKING DRAFT ...    42   8.5    1
(AC174400) Aotus nancymaae clone CH258-483K23, WORKING DRAFT...    42   8.5    1
(AC173947) Callicebus moloch clone LB5-353E13, WORKING DRAFT...    42   8.5    1
(AC172694) Bos taurus clone CH240-199A23, WORKING DRAFT SEQU...    42   8.5    1
(AC171888) Bos taurus clone CH240-262K13, WORKING DRAFT SEQU...    42   8.5    1
(AC171411) Bos taurus clone CH240-163I17, WORKING DRAFT SEQU...    42   8.5    1
(AC170934) Bos taurus clone CH240-280G22, WORKING DRAFT SEQU...    42   8.5    1
(AC170202) Macaca mulatta clone CH250-102N2, WORKING DRAFT S...    42   8.5    1
(AC170200) Macaca mulatta clone CH250-190E12, WORKING DRAFT ...    42   8.5    1
(AZ684935) ENTLJ52TR Entamoeba histolytica Sheared DNA Entam...    42   8.5    1
(AZ683615) ENTLW87TF Entamoeba histolytica Sheared DNA Entam...    42   8.5    1
(AZ529551) ENTBM39TR Entamoeba histolytica Sheared DNA Entam...    42   8.5    1
(AZ528749) ENTBQ80TF Entamoeba histolytica Sheared DNA Entam...    42   8.5    1
(FH174309) CHO_OF3397xi04r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   8.5    1
(ER928271) MUGQ_CH252P289H05T7_CP449_025 CHORI-252 Vervet Mo...    42   8.5    1
(ER616083) 1093017249243 Global-Ocean-Sampling_GS-36-01-01-2...    42   8.5    1
(ER413629) 1095390039293 Global-Ocean-Sampling_GS-34-01-01-1...    42   8.5    1
(EK453484) 1095467693125 Global-Ocean-Sampling_GS-32-01-01-1...    42   8.5    1
(EJ888939) 1093018432521 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.5    1
(EJ833685) 1093017605467 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.5    1
(AQ096801) HS_3039_A1_D05_MF CIT Approved Human Genomic Sper...    42   8.5    1
(EJ129608) 1092343423474 Global-Ocean-Sampling_GS-27-01-01-1...    42   8.5    1
(EJ033404) 1095454060163 Global-Ocean-Sampling_GS-26-01-01-1...    42   8.5    1
(DH301765) Oryzias latipes Fosmid clone:GOLWFno650_m22, forw...    42   8.5    1
(DE506660) Bombyx mori genomic DNA, Fosmid clone:GBMFno120_i...    42   8.5    1
(DE498008) Bombyx mori genomic DNA, Fosmid clone:GBMFno108_d...    42   8.5    1
(DE156198) Bombyx mori genomic DNA, Fosmid clone:RO0299-D07_F.     42   8.5    1
(CT536934) A BAC library has been constructed from cultivar ...    42   8.5    1
(CG755440) P051-1-C11.ya Ppa EcoRI BAC Library Pristionchus ...    42   8.5    1
(CG268492) OG5BB47TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   8.5    1
(CE355386) tigr-gss-dog-17000361505637 Dog Library Canis lup...    42   8.5    1
(CC507117) CH240_348H8.T7 CHORI-240 Bos taurus genomic clone...    42   8.5    1
(BZ979421) PUGFM94TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   8.5    1
(AG200543) Pan troglodytes DNA, clone: RP43-082J13.TJ.             42   8.5    1
(DY644442) PU3_plate38_L15 PU3 Prunus persica cDNA similar t...    42   8.5    1
(DY639612) PU2_plate51_D24 PU2 Prunus persica cDNA similar t...    42   8.5    1
(DY639041) PU2_plate36_M06 PU2 Prunus persica cDNA similar t...    42   8.5    1
(DT620085) ACAH-aaa18d06.g1 Hydra_EST_UCI-10 Hydra magnipapi...    42   8.5    1
(DT608859) ACAG-aaa66d09.g1 Hydra_EST_UCI-9 Hydra magnipapil...    42   8.5    1
(CX056148) tai96a03.y2 Hydra EST UCI 5 ALP Hydra magnipapill...    42   8.5    1
(GE386611) 293708826 Nasonia vitripennis Female Pupae Nasoni...    42   8.5    1
(GD218628) G1045P392FI6.T1 Aplysia californica Pooled Normal...    42   8.5    1
(FE210898) L011H07 Antarctic fish Dissostichus mawsoni adult...    42   8.5    1
(FC865801) PPN018F01-T7 PPN Prunus persica cDNA clone PPN018...    42   8.5    1
(FC616289) CAXS8175.rev CAXS Lottia gigantea from head, foot...    42   8.5    1
(ES730640) Nad03b_15_G07_C005.g1 Nuphar advena flower bud li...    42   8.5    1
(ES730607) Nad03b_15_G07_C005.b1 Nuphar advena flower bud li...    42   8.5    1
(EV813973) BGBV-aae88e08.g1 Snail_EST_pSMART Biomphalaria gl...    34   8.6    2
(DD061441) Methods and nucleic acids for the analysis of  he...    34   8.9    2
(DD061295) Methods and nucleic acids for the analysis of  he...    34   8.9    2
(AX599003) Sequence 343 from Patent WO02077272.                    34   8.9    2
(AX598857) Sequence 197 from Patent WO02077272.                    34   8.9    2
(FG296767) 1108793262892 New World Screwworm Larvae 9387 EST...    34   8.9    3
(FG298782) 1108793320683 New World Screwworm Larvae 9387 EST...    34   9.0    3
(AL353818) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    36   9.2    2
(FG292886) 1108770644278 New World Screwworm Larvae 9387 EST...    34   9.4    3
(CU896576) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   9.4    2
(FG298395) 1108793311371 New World Screwworm Larvae 9387 EST...    34   9.7    3
(FG298436) 1108793311423 New World Screwworm Larvae 9387 EST...    34   9.7    3
(FG292848) 1108770644215 New World Screwworm Larvae 9387 EST...    34   9.7    3
(FG293365) 1108770669990 New World Screwworm Larvae 9387 EST...    34   9.8    3
(AM478972) Vitis vinifera contig VV78X248826.27, whole genom...    36   9.8    2
(FG295628) 1108770734887 New World Screwworm Larvae 9387 EST...    34   9.9    3
(FG283411) 1108770613866 New World Screwworm Egg 9261 ESTs C...    34   10.0   3

>(BJ388581) Dictyostelium discoideum cDNA clone:dds6c12, 5' end,
          single read.
          Length = 229

 Score =  107 bits (54), Expect(3) = 3e-37
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 1  aaaatgattgtttattattaaattataaaactaatgaatgactgtagtcctatc 54
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaatgattgtttattattaaattataaaactaatgaatgactgtagtcctatc 54

 Score = 65.9 bits (33), Expect(3) = 3e-37
 Identities = 33/33 (100%)
 Strand = Plus / Plus


Query: 121 ctctagcaatttcttttattttaaaataacaag 153
           |||||||||||||||||||||||||||||||||
Sbjct: 121 ctctagcaatttcttttattttaaaataacaag 153

 Score = 34.2 bits (17), Expect(3) = 3e-37
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 204 cagtttntaaattttaaancaaa 226
           |||||||||||||||||||||||
Sbjct: 204 cagtttntaaattttaaancaaa 226

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 194,304,801
Number of extensions: 15464904
Number of successful extensions: 4999554
Number of sequences better than 10.0: 290
Length of query: 228
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 205
Effective length of database: 99,442,330,388
Effective search space: 20385677729540
Effective search space used: 20385677729540
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.28
Homology vs Protein 
Query= Contig-U03444-1 (Contig-U03444-1Q) /CSM_Contig/Contig-U03444-1Q.Seq.d
         (228 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 143,485,187
Number of extensions: 1416327
Number of successful extensions: 1564
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1564
Number of HSP's successfully gapped: 0
Length of query: 76
Length of database: 1,061,185,681
Length adjustment: 47
Effective length of query: 29
Effective length of database: 907,568,625
Effective search space: 26319490125
Effective search space used: 26319490125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.93  gvh: 0.51  alm: 0.35  top: 0.80  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03444-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0