| Contig-U03439-1 |
| Contig ID |
Contig-U03439-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1249 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
1191196 |
| End point |
1191884 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
8 |
| Number of EST |
9 |
| Link to clone list |
U03439 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5.31 |
| Homology vs DNA |
Query= Contig-U03439-1 (Contig-U03439-1Q) /CSM_Contig/Contig-U03439-1Q.Seq.d
(1249 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ388646) Dictyostelium discoideum cDNA clone:dds6g18, 5' e... 1150 0.0 1
(BJ390092) Dictyostelium discoideum cDNA clone:dds21k06, 5' ... 1078 0.0 1
(C93877) Dictyostelium discoideum slug cDNA, clone SSL819. 771 0.0 2
(BJ399322) Dictyostelium discoideum cDNA clone:dds5n12, 3' e... 716 0.0 1
(BJ399579) Dictyostelium discoideum cDNA clone:dds6g18, 3' e... 646 0.0 2
(C90061) Dictyostelium discoideum slug cDNA, clone SSG282. 511 e-142 3
(AU074773) Dictyostelium discoideum slug cDNA, clone SSL819. 476 e-129 1
(AU074349) Dictyostelium discoideum slug cDNA, clone SSK445. 476 e-129 1
(AU073330) Dictyostelium discoideum slug cDNA, clone SSG690. 406 e-109 1
(C91562) Dictyostelium discoideum slug cDNA, clone SSK445. 375 e-102 3
(BJ387853) Dictyostelium discoideum cDNA clone:dds5n12, 5' e... 333 1e-86 1
(C89955) Dictyostelium discoideum slug cDNA, clone SSG690. 92 6e-14 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.004 15
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.009 11
(AC150209) Pan troglodytes chromosome X clone PTB-085O24 map... 46 0.016 7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.026 14
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 0.029 19
(AM422018) Candidatus Phytoplasma australiense complete genome. 32 0.035 21
(AC023037) Homo sapiens chromosome X clone RP11-630D8 map X,... 46 0.048 4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 30 0.11 13
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 0.11 14
(EK059474) 1092960063300 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.15 4
(ER339688) 1092344334858 Global-Ocean-Sampling_GS-34-01-01-1... 34 0.16 3
(EJ765231) 1092963199330 Global-Ocean-Sampling_GS-30-02-01-1... 34 0.18 3
(AC232999) Peromyscus maniculatus rufinus clone CH233-475O5,... 50 0.21 1
(AF291051) Carsonella ruddii cell division protein (gidA) ge... 34 0.33 5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 46 0.39 13
(AY301620) Bombyx mandarina from China mitochondrial DNA, co... 38 0.43 5
(AC187866) Populus trichocarpa clone Pop1-7B1, complete sequ... 34 0.44 8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.45 10
(CU457797) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.45 2
(AC188344) Aotus nancymaae clone CH258-442H14, WORKING DRAFT... 38 0.47 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.53 11
(AL844509) Plasmodium falciparum chromosome 13. 34 0.59 21
(BX179690) Danio rerio genomic clone DKEY-180C22, genomic su... 34 0.60 2
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 38 0.62 10
(EJ288421) 1095370003016 Global-Ocean-Sampling_GS-27-01-01-1... 36 0.71 3
(AL034559) Plasmodium falciparum MAL3P7. 36 0.71 11
(AC140951) Pan troglodytes BAC clone RP43-60K3 from chromoso... 34 0.82 5
(AL732396) Mouse DNA sequence from clone RP23-93M14 on chrom... 48 0.82 1
(EK049995) 1092959687665 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.82 1
(EJ550081) 1092959435239 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.82 1
(EJ536033) 1092955259357 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.82 1
(CZ111619) OM__Ba0125K15.r OM__Ba Oryza minuta genomic clone... 48 0.82 1
(CP000688) Dehalococcoides sp. BAV1, complete genome. 48 0.82 1
(AJ965256) Dehalococcoides sp. CBDB1 complete genome. 48 0.82 1
(AC136138) Medicago truncatula clone mth2-8f9, complete sequ... 34 0.83 6
(DJ387386) Diagnosis of Diseases Associated with Apoptosis. 30 0.88 5
(AX345217) Sequence 288 from Patent WO0200928. 30 0.88 5
(AX281294) Sequence 36 from Patent WO0177164. 30 0.88 5
(AC006883) Caenorhabditis elegans clone Y57D6, *** SEQUENCIN... 40 1.1 6
(EK137668) 1095454016493 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.1 2
(CZ932503) 253219 Tomato EcoRI BAC Library Solanum lycopersi... 42 1.1 2
(CF803341) rg70c06.y1 Meloidogyne hapla female SL1 pGEM Melo... 38 1.2 3
(BH771004) LLMGtag727 MG1363 Random Sequence Tag Library Lac... 42 1.2 2
(CP000312) Clostridium perfringens SM101, complete genome. 36 1.4 20
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 36 1.4 9
(AB070263) Bombyx mandarina mitochondrial DNA, complete genome. 38 1.5 5
(CF803401) rg70h10.y1 Meloidogyne hapla female SL1 pGEM Melo... 38 1.5 3
(BX530031) Zebrafish DNA sequence from clone DKEY-175M17 in ... 34 1.8 8
(AE001584) Borrelia burgdorferi B31 plasmid lp56, complete s... 34 1.9 7
(AE017308) Mycoplasma mobile 163K complete genome. 34 1.9 20
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 34 1.9 9
(ER626086) 1093018100345 Global-Ocean-Sampling_GS-36-01-01-2... 34 2.2 3
(EJ107634) 1092343142475 Global-Ocean-Sampling_GS-27-01-01-1... 36 2.2 2
(EJ015111) 1095433014944 Global-Ocean-Sampling_GS-26-01-01-1... 36 2.2 2
(DQ874266) Blaptica dubia cytochrome oxidase subunit II (COI... 36 2.2 2
(DQ181521) Blaptica dubia isolate nr5 cytochrome oxidase sub... 36 2.2 2
(EJ077634) 1095458135723 Global-Ocean-Sampling_GS-26-01-01-1... 36 2.2 3
(DE518198) Bombyx mori genomic DNA, Fosmid clone:GBMFno136_j... 34 2.2 2
(CT737140) Pan troglodytes chromosome X clone CH251-1E12, **... 46 2.3 4
(AF137023) Wollastonia biflora methionine S-methyltransferas... 40 2.3 3
(CU571402) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 2.3 7
(AC215445) Solanum lycopersicum chromosome 2 clone C02SLe001... 32 2.4 8
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 2.4 16
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.5 13
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 2.5 13
(AF336303) Ostrinia nubilalis tRNA-Leu gene, partial sequenc... 34 2.5 3
(AC208278) Nomascus leucogenys leucogenys clone CH271-32P20,... 36 2.6 8
(DU742912) ASNC1460.g2 HF10_10-07-02 uncultured marine micro... 36 2.6 3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 40 2.6 21
(CT490956) A BAC library has been constructed from cultivar ... 34 3.1 3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 3.1 18
(CR769783) Zebrafish DNA sequence from clone DKEY-40A23 in l... 46 3.3 1
(CR762427) Zebrafish DNA sequence from clone DKEY-253I9 in l... 46 3.3 1
(BX927231) Zebrafish DNA sequence from clone DKEYP-26F11 in ... 46 3.3 1
(BX537132) Zebrafish DNA sequence from clone RP71-8L21 in li... 46 3.3 1
(BX323028) Zebrafish DNA sequence from clone DKEY-211A8 in l... 46 3.3 1
(AC122482) Mus musculus BAC clone RP24-361E14 from chromosom... 46 3.3 1
(AC187625) Pan troglodytes BAC clone CH251-423K24 from chrom... 46 3.3 1
(AC183665) Pan troglodytes BAC clone CH251-655J2 from chromo... 46 3.3 1
(AJ010770) Homo sapiens hyperion gene, exons 1-50. 46 3.3 1
(AC121343) Homo sapiens X BAC RP11-438J7 (Roswell Park Cance... 46 3.3 1
(AC004013) Homo sapiens BAC clone GS1-541B18 from 7, complet... 46 3.3 1
(FP102501) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1
(FP102153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1
(AC093189) Pan troglodytes clone RP43-17P3, WORKING DRAFT SE... 46 3.3 1
(CR925878) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.3 1
(AC178237) Strongylocentrotus purpuratus clone R3-3086C18, W... 46 3.3 1
(AC172782) Bos taurus clone CH240-257H7, WORKING DRAFT SEQUE... 46 3.3 1
(AC172621) Bos taurus clone CH240-158J19, WORKING DRAFT SEQU... 46 3.3 1
(AZ501457) 1M0340M17F Mouse 10kb plasmid UUGC1M library Mus ... 46 3.3 1
(FH741977) CHO_OF5160xl12r1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 3.3 1
(ER968830) AF__Bc0024N21f AF__Bc Aquilegia formosa genomic, ... 46 3.3 1
(ER665808) SB_BBc47-P04.R SB_BBc Sorghum bicolor genomic 3',... 46 3.3 1
(ER598635) 1093016232770 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.3 1
(ER515666) 1093015500624 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.3 1
(ER313861) 1092344121760 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.3 1
(EJ701397) 1092956037806 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.3 1
(EJ663683) 1092955033808 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.3 1
(EJ185106) 1092344146768 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.3 1
(EJ104150) 1092343130909 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.3 1
(EJ063820) 1095458017896 Global-Ocean-Sampling_GS-26-01-01-1... 46 3.3 1
(CW162285) 104_569_11150863_116_36440_024 Sorghum methylatio... 46 3.3 1
(CR275370) Reverse strand read from insert in 5'HPRT inserti... 46 3.3 1
(CL142844) ISB1-120O4_T7.1 ISB1 Xenopus (Silurana) tropicali... 46 3.3 1
(CL126896) ISB1-91J12_T7.1 ISB1 Xenopus (Silurana) tropicali... 46 3.3 1
(EB564381) AGENCOURT_51118090 D. virilis EST Drosophila viri... 46 3.3 1
(EB557557) AGENCOURT_51877180 D. virilis EST Drosophila viri... 46 3.3 1
(DY766383) 24H_new14_F12 Bicyclus anynana wings - 24H pupae ... 46 3.3 1
(BF692446) 602247964F1 NIH_MGC_62 Homo sapiens cDNA clone IM... 46 3.3 1
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 46 3.3 1
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 30 3.4 7
(AC168605) Strongylocentrotus purpuratus clone R3-3046L12, W... 38 3.7 5
(AZ542760) ENTET18TR Entamoeba histolytica Sheared DNA Entam... 36 3.7 2
(EJ735124) 1092961100927 Global-Ocean-Sampling_GS-30-02-01-1... 36 3.7 2
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 3.7 4
(EJ988020) 1093023025437 Global-Ocean-Sampling_GS-30-02-01-1... 38 3.8 2
(CU640431) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.8 4
(AF106591) Caenorhabditis elegans cosmid T01A4, complete seq... 36 3.9 5
(CR847971) Zebrafish DNA sequence from clone CH211-147M20 in... 36 3.9 6
(AC195051) Ornithorhynchus anatinus clone OA_Bb-365A21, WORK... 36 4.2 7
(BX664745) Zebrafish DNA sequence from clone DKEY-242A8 in l... 36 4.4 9
(AF039718) Caenorhabditis elegans cosmid T12F5, complete seq... 38 4.4 4
(AJ332398) Homo sapiens genomic sequence surrounding NotI si... 32 4.6 3
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 38 4.8 11
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 34 4.9 11
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 5.7 10
(BX322647) Zebrafish DNA sequence from clone DKEYP-86F8 in l... 40 5.9 5
(AE017263) Mesoplasma florum L1 complete genome. 34 6.0 19
(AC099693) Mus musculus clone RP23-108K17, WORKING DRAFT SEQ... 32 6.0 2
(AL627098) Mouse DNA sequence from clone RP23-108K17 on chro... 32 6.0 2
(CU972389) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 6.0 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 6.3 8
(EK023434) 1092955348401 Global-Ocean-Sampling_GS-31-01-01-1... 34 6.4 3
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 6.6 9
(AM454899) Vitis vinifera, whole genome shotgun sequence, co... 34 6.6 2
(FH066581) CHO_OF3620xc15r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 6.9 2
(AC201170) Strongylocentrotus purpuratus clone R3-14K2, WORK... 36 7.2 5
(AX348666) Sequence 124 from Patent WO0202807. 34 7.4 2
(AX344269) Sequence 116 from Patent WO0200926. 34 7.4 2
(ER395275) 1095344006015 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.1 2
(EJ756513) 1092963086732 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.1 2
(EJ756080) 1092963083660 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.1 2
(ER401269) 1095351007071 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.1 2
(EJ686801) 1092955189463 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.1 2
(EJ817419) 1093017522138 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.1 2
(CB985473) AGENCOURT_13631913 NIH_MGC_184 Homo sapiens cDNA ... 34 8.2 2
(ER361923) 1092405868643 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2
(EK175438) 1095458095587 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.2 2
(ER466082) 1092963923148 Global-Ocean-Sampling_GS-35-01-01-1... 34 8.2 2
(ER296970) 1092343653569 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2
(AZ388659) 1M0148I17R Mouse 10kb plasmid UUGC1M library Mus ... 32 8.3 2
(EJ817835) 1093017524058 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.3 2
(EK243610) 1095460243812 Global-Ocean-Sampling_GS-31-01-01-1... 38 8.6 3
(CZ507170) GMW2-11M11a.g1 GMW2 Glycine max genomic, genomic ... 34 8.7 3
(CU740084) Brassica rapa subsp. pekinensis clone KBrB117L03,... 34 8.8 6
(AQ023773) CpGR0155B Cryptosporidium parvum genomic random l... 42 8.8 2
(CR628387) Zebrafish DNA sequence from clone DKEY-59J17 in l... 34 9.0 8
(AL844506) Plasmodium falciparum chromosome 7. 40 9.5 15
(DQ520859) Strelkovimermis spiculatus haplotype large mitoch... 32 9.5 6
(AQ034199) CpG0498B CpIOWAgDNA1 Cryptosporidium parvum genom... 42 9.6 2
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 32 9.6 6
(ET641315) JBVS654TR JBVS Allium cepa genomic clone JBVS4_S5... 34 9.7 3
(BX927072) Zebrafish DNA sequence from clone CH211-227D19 in... 40 9.8 3
(AC182770) Cavia porcellus clone CH234-460H21, WORKING DRAFT... 38 9.8 6
(X04465) Marchantia polymorpha chloroplast genome DNA. 34 9.8 8
>(BJ388646) Dictyostelium discoideum cDNA clone:dds6g18, 5' end,
single read.
Length = 580
Score = 1150 bits (580), Expect = 0.0
Identities = 580/580 (100%)
Strand = Plus / Plus
Query: 8 aattaataacacaataaacaaacagtttataaactaaaaaatgagtgaaggagctaataa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattaataacacaataaacaaacagtttataaactaaaaaatgagtgaaggagctaataa 60
Query: 68 acaaaaaatttttatttcattagatggcggaggtactcgtggattaatgacaatccaaat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaaaaaatttttatttcattagatggcggaggtactcgtggattaatgacaatccaaat 120
Query: 128 tttaagtcatttagaaaaagaattgggaagaaatattggagatttatgtgatattattgc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaagtcatttagaaaaagaattgggaagaaatattggagatttatgtgatattattgc 180
Query: 188 aggtacaagtgctggtggtataatatcattttgtaaaatgaatggtattgataatgaatt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtacaagtgctggtggtataatatcattttgtaaaatgaatggtattgataatgaatt 240
Query: 248 aattaatgaactttataaatgtgttggtaaaaaagttacaaaatttaattgttcaaattt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattaatgaactttataaatgtgttggtaaaaaagttacaaaatttaattgttcaaattt 300
Query: 308 tacagaatctcaatcaattgcaaatacaaatttattaattgaagaattatcaaaactttt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacagaatctcaatcaattgcaaatacaaatttattaattgaagaattatcaaaactttt 360
Query: 368 ttcaggaaatattaaagattttgcaaaacatagaaaaggttttgttttaacatgtctttc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcaggaaatattaaagattttgcaaaacatagaaaaggttttgttttaacatgtctttc 420
Query: 428 accaacattattaccaattgattatagagcttatatgatttcaaattatgataatgataa 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 accaacattattaccaattgattatagagcttatatgatttcaaattatgataatgataa 480
Query: 488 tcggttctatatggagccaaagaaaatgttagatatttcagtggtcgattcaattcgtgc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcggttctatatggagccaaagaaaatgttagatatttcagtggtcgattcaattcgtgc 540
Query: 548 cactagtggaattcctttactattcaatgtaccaagatat 587
||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cactagtggaattcctttactattcaatgtaccaagatat 580
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,621,935,269
Number of extensions: 106056929
Number of successful extensions: 9043408
Number of sequences better than 10.0: 179
Length of query: 1249
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1225
Effective length of database: 99,340,224,878
Effective search space: 121691775475550
Effective search space used: 121691775475550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.28 |
| Homology vs Protein |
Query= Contig-U03439-1 (Contig-U03439-1Q) /CSM_Contig/Contig-U03439-1Q.Seq.d
(1249 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197_19(AC084197|pid:none) Caenorhabditis elegans cosmid Y73... 64 9e-09
BC077558_1(BC077558|pid:none) Xenopus laevis MGC83523 protein, m... 50 1e-04
CP000700_31(CP000700|pid:none) Sphingomonas wittichii RW1 plasmi... 48 8e-04
AB478516_60(AB478516|pid:none) Wolbachia endosymbiont of Cadra c... 46 0.002
CT573075_3(CT573075|pid:none) Zebrafish DNA sequence from clone ... 46 0.003
AE017196_502(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 45 0.005
CP001391_572(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 44 0.009
CP000738_1220(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 44 0.009
CP000384_3160(CP000384|pid:none) Mycobacterium sp. MCS, complete... 44 0.012
CU458896_2069(CU458896|pid:none) Mycobacterium abscessus chromos... 44 0.012
AL021489_5(AL021489|pid:none) Caenorhabditis elegans YAC Y44A6C,... 43 0.021
AL021489_4(AL021489|pid:none) Caenorhabditis elegans YAC Y44A6C,... 43 0.021
AL021489_3(AL021489|pid:none) Caenorhabditis elegans YAC Y44A6C,... 43 0.021
BC067375_1(BC067375|pid:none) Danio rerio phospholipase A2, grou... 43 0.021
CP001295_19(CP001295|pid:none) Cyanothece sp. PCC 7424 plasmid p... 42 0.035
BC098731_1(BC098731|pid:none) Rattus norvegicus splicing factor ... 42 0.061
BX571946_1(BX571946|pid:none) Zebrafish DNA sequence from clone ... 41 0.079
EU419878_1(EU419878|pid:none) Gallus gallus PNPLA8 mRNA, complet... 41 0.10
BC051192_1(BC051192|pid:none) Homo sapiens splicing factor proli... 41 0.10
CP000675_1357(CP000675|pid:none) Legionella pneumophila str. Cor... 40 0.13
AM999887_271(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 40 0.13
T33857(T33857)hypothetical protein D1037.5 - Caenorhabditis eleg... 40 0.13
CP000388_210(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 40 0.18
CP000542_4567(CP000542|pid:none) Verminephrobacter eiseniae EF01... 40 0.23
(P23246) RecName: Full=Splicing factor, proline- and glutamine-r... 40 0.23
BC004534_1(BC004534|pid:none) Homo sapiens splicing factor proli... 40 0.23
(P12105) RecName: Full=Collagen alpha-1(III) chain; Flags: Precu... 39 0.30
AY449460_21(AY449460|pid:none) Oikopleura dioica clone BACOIKO00... 39 0.30
I50694(I50694) collagen alpha 1(III) chain - chicken (fragment) ... 39 0.30
CP000813_1621(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 39 0.39
AM482217_5(AM482217|pid:none) Vitis vinifera contig VV78X182164.... 39 0.39
AC152499_11(AC152499|pid:none) Medicago truncatula clone mth2-56... 39 0.39
AE015927_663(AE015927|pid:none) Clostridium tetani E88, complete... 39 0.39
T22327(T22327) hypothetical protein F47A4.5 - Caenorhabditis ele... 39 0.51
DQ647926_1(DQ647926|pid:none) Myxine glutinosa type II collagen ... 39 0.51
(P04258) RecName: Full=Collagen alpha-1(III) chain; &CGBO7S(A02... 39 0.51
U03715_1(U03715|pid:none) Mus musculus alpha-1(XVIII) collagen (... 39 0.51
BC064817_1(BC064817|pid:none) Mus musculus collagen, type XVIII,... 39 0.51
L16898_1(L16898|pid:none) Mus musculus collagen alpha 1 type XVI... 39 0.51
AK031798_1(AK031798|pid:none) Mus musculus 11 days embryo head c... 39 0.51
D17546_1(D17546|pid:none) Mus musculus mRNA for collagen, partia... 39 0.51
L22545_1(L22545|pid:none) Mouse alpha 1(XVIII) collagen mRNA, pa... 39 0.51
CP000687_1983(CP000687|pid:none) Actinobacillus pleuropneumoniae... 38 0.67
CP001091_2083(CP001091|pid:none) Actinobacillus pleuropneumoniae... 38 0.67
AY809890_1(AY809890|pid:none) Schistosoma japonicum SJCHGC09449 ... 38 0.67
CP001102_1305(CP001102|pid:none) Candidatus Amoebophilus asiatic... 38 0.87
CP000469_1247(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 37 1.1
BA000016_1339(BA000016|pid:none) Clostridium perfringens str. 13... 37 1.1
U09279_1(U09279|pid:none) Human type XIX collagen (COL19A1) mRNA... 37 1.1
AB004629_1(AB004629|pid:none) Homo sapiens gene for Type XIX col... 37 1.1
AB000636_1(AB000636|pid:none) Mus musculus mRNA for collagen a1 ... 37 1.1
BC118970_1(BC118970|pid:none) Mus musculus collagen, type XIX, a... 37 1.1
(Q9H572) RecName: Full=Collagen alpha-1(XIX) chain; AltName: Ful... 37 1.1
AM260480_1075(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 37 1.5
CP000724_4483(CP000724|pid:none) Alkaliphilus metalliredigens QY... 37 1.5
CU633750_892(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 37 1.5
CP001020_677(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 37 1.5
CP000733_874(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 37 1.5
CU207211_2078(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 37 1.5
CP000542_692(CP000542|pid:none) Verminephrobacter eiseniae EF01-... 37 1.5
CP001325_268(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 37 1.5
CP001325_513(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 37 1.9
CP000875_4839(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 37 1.9
AJ235272_50(AJ235272|pid:none) Rickettsia prowazekii strain Madr... 37 1.9
AE017197_501(AE017197|pid:none) Rickettsia typhi str. Wilmington... 37 1.9
AK048546_1(AK048546|pid:none) Mus musculus 16 days embryo head c... 37 2.0
BC153847_1(BC153847|pid:none) Bos taurus collagen, type XVIII, a... 37 2.0
EU304328_134(EU304328|pid:none) Ostreococcus virus OsV5, complet... 36 2.5
CP001291_2614(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 36 2.5
CP000157_568(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 36 2.5
AC005058_1(AC005058|pid:none) Homo sapiens BAC clone CTB-54D4 fr... 36 2.5
CR628337_1244(CR628337|pid:none) Legionella pneumophila str. Len... 36 2.5
AP006841_3348(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 36 2.5
CP000884_748(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 36 2.5
CP000859_2988(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 36 2.5
AC006618_1(AC006618|pid:none) Caenorhabditis elegans cosmid C45B... 36 2.5
AK024335_1(AK024335|pid:none) Homo sapiens cDNA FLJ14273 fis, cl... 36 2.5
AK291755_1(AK291755|pid:none) Homo sapiens cDNA FLJ77572 complet... 36 2.5
CP000312_1308(CP000312|pid:none) Clostridium perfringens SM101, ... 36 2.5
(Q9NP80) RecName: Full=Calcium-independent phospholipase A2-gamm... 36 2.5
AK041115_1(AK041115|pid:none) Mus musculus adult male aorta and ... 36 2.5
(P13941) RecName: Full=Collagen alpha-1(III) chain; Flags: Precu... 36 2.5
BC052398_1(BC052398|pid:none) Mus musculus collagen, type III, a... 36 2.5
CT573213_4319(CT573213|pid:none) Frankia alni str. ACN14A chromo... 36 2.5
(P08121) RecName: Full=Collagen alpha-1(III) chain; Flags: Precu... 36 2.5
AK220558_1(AK220558|pid:none) Mus musculus mRNA for mKIAA4231 pr... 36 2.5
S59856(S59856;S62120;S16373)collagen alpha 1(III) chain precurso... 36 2.5
AM920428_1324(AM920428|pid:none) Penicillium chrysogenum Wiscons... 36 2.5
CP000777_2324(CP000777|pid:none) Leptospira biflexa serovar Pato... 36 3.3
AP008971_197(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 36 3.3
AE017194_4865(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 36 3.3
CR522870_777(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 36 3.3
AM920439_312(AM920439|pid:none) Penicillium chrysogenum Wisconsi... 36 3.3
AM920436_34(AM920436|pid:none) Penicillium chrysogenum Wisconsin... 36 3.3
CP000820_3029(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 36 3.3
I48103(I48103) type VII collagen - Chinese hamster (fragment) &... 36 3.3
A05269(A05269;A38035;A20855)collagen alpha 1(III) chain precurso... 36 3.3
CP000312_1512(CP000312|pid:none) Clostridium perfringens SM101, ... 35 4.3
AM920458_1(AM920458|pid:none) Penicillium chrysogenum Wisconsin ... 35 4.3
AM920437_2668(AM920437|pid:none) Penicillium chrysogenum Wiscons... 35 4.3
(Q9JKS6) RecName: Full=Protein piccolo; AltName: Full=Aczonin; A... 35 4.3
AK313179_1(AK313179|pid:none) Homo sapiens cDNA, FLJ93678, highl... 35 4.3
AF138789_1(AF138789|pid:none) Rattus norvegicus multidomain pres... 35 4.3
CP001131_1461(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 33 5.5
CP000606_3420(CP000606|pid:none) Shewanella loihica PV-4, comple... 35 5.7
CP000023_982(CP000023|pid:none) Streptococcus thermophilus LMG 1... 35 5.7
CP000419_853(CP000419|pid:none) Streptococcus thermophilus LMD-9... 35 5.7
CP000109_487(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 35 5.7
CP000781_1872(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 35 5.7
CP000083_2756(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 35 5.7
AP007161_245(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 35 5.7
CP000777_1418(CP000777|pid:none) Leptospira biflexa serovar Pato... 35 5.7
AE015924_782(AE015924|pid:none) Porphyromonas gingivalis W83, co... 35 5.7
AB384877_1(AB384877|pid:none) Synthetic construct DNA, clone: pF... 35 5.7
CP000058_1849(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 35 5.7
BC128667_1(BC128667|pid:none) Xenopus laevis hypothetical protei... 35 5.7
BC055991_1(BC055991|pid:none) Xenopus laevis hypothetical protei... 35 5.7
S53787(S53787)collagen alpha chain - Paralvinella grasslei (frag... 35 5.7
CGHU7L(S05272;S04642;PE0011;S01726;S04887;A90399;A94562;)collage... 35 5.7
(Q6LDJ3) RecName: Full=Collagen alpha-1(III) chain; Flags: Precu... 35 5.7
AF009011_1(AF009011|pid:none) Mus musculus Axin mRNA, partial cds. 35 5.7
T28708(T28708)hypothetical protein T21D12.2 - Caenorhabditis ele... 35 5.7
CP001326_401(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 29 7.3
CP001336_3773(CP001336|pid:none) Desulfitobacterium hafniense DC... 35 7.4
CP000644_958(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 35 7.4
CP001079_184(CP001079|pid:none) Anaplasma marginale str. Florida... 35 7.4
AM910993_130(AM910993|pid:none) Plasmodium knowlesi strain H chr... 35 7.4
AE015928_1016(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 35 7.4
FM954972_1655(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 35 7.4
AP008230_2669(AP008230|pid:none) Desulfitobacterium hafniense Y5... 35 7.4
AF169346_1(AF169346|pid:none) Cavia porcellus pro-alpha-1 type 1... 35 7.4
(A1KMI2) RecName: Full=Translation initiation factor IF-2; &(A5... 35 7.4
(Q6SPF0) RecName: Full=Atherin; AltName: Full=Sterile alpha moti... 35 7.4
AF083440_1(AF083440|pid:none) Gallus gallus collagen XVIII mRNA,... 35 7.4
CT573213_5925(CT573213|pid:none) Frankia alni str. ACN14A chromo... 35 7.4
AM920457_1(AM920457|pid:none) Penicillium chrysogenum Wisconsin ... 34 9.7
EF413636_1(EF413636|pid:none) Uncultured organism clone PLP pata... 34 9.7
AM920428_498(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 34 9.7
AM441285_1(AM441285|pid:none) Vitis vinifera contig VV79X001748.... 34 9.7
B36298(B36298)proline-rich protein PRB3S (cys) - human (fragment) 34 9.7
U24189_3(U24189|pid:none) Caenorhabditis elegans hypothetical pr... 34 9.7
AL672176_2(AL672176|pid:none) Zebrafish DNA sequence from clone ... 34 9.7
JC5437(JC5437)spliceosome-associated protein 49 - Caenorhabditis... 34 9.7
BC135599_1(BC135599|pid:none) Xenopus tropicalis hypothetical pr... 34 9.7
A54849(A54849;PH0844;S16316;I56328;A30296;I84686)collagen alpha ... 34 9.7
L06862_1(L06862|pid:none) Human type VII collagen (COL7A1) mRNA,... 34 9.7
(Q02388) RecName: Full=Collagen alpha-1(VII) chain; AltName: Ful... 34 9.7
AL833902_1(AL833902|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0... 34 9.7
DQ008304_1(DQ008304|pid:none) Staphylococcus xylosus biofilm-ass... 34 9.7
L23982_1(L23982|pid:none) Homo sapiens collagen type VII (COL7A1... 34 9.7
A30496(A30496) proline-rich protein 13 - rat &M64792_1(M64792|p... 34 9.7
(Q09442) RecName: Full=Splicing factor 3B subunit 4; AltName: Fu... 34 9.7
FN357393_10(FN357393|pid:none) Schistosoma mansoni genome sequen... 34 9.7
AF053538_1(AF053538|pid:none) Alvinella pompejana fibrillar coll... 34 9.7
BC088035_1(BC088035|pid:none) Xenopus tropicalis complement comp... 34 9.7
>AC084197_19(AC084197|pid:none) Caenorhabditis elegans cosmid
Y73B6BL, complete sequence.
Length = 546
Score = 64.3 bits (155), Expect = 9e-09
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 9/201 (4%)
Frame = +3
Query: 81 ISLDGGGTRGLMTIQILSHLEKELGRNIGDLCD-XXXXXXXXXXXXFCKMNGIDNELINE 257
+S+DGGGTRG+M +++L +EK G+ I +L D G + E
Sbjct: 210 LSIDGGGTRGMMGLEVLEKIEKLSGKKICELFDMICGVSTGSIIAALLTAKGYSVKECRE 269
Query: 258 LYKCVGKKVTKFNCSNFTES------QSIANTNLLIEELSKLFSGNIKDFAKHRKGFV-- 413
+Y V K++ F+ F S S NTNL I L ++ +I RK
Sbjct: 270 VYMDVSKRL--FSQGKFQGSMGLILKHSYYNTNLWISILKQMIGEDITMINTSRKLHTPR 327
Query: 414 LTCLSPTLLPIDYRAYMISNYDNDNRFYMEPKKMLDISVVDSIRATSGIPLLFNVPRYQG 593
L +S + + Y+ NYD+ + D + +I+A++ PL F+ +
Sbjct: 328 LAIVSSIVNLPTIQPYIFRNYDHPAGRDSHYRGGADHCLWTAIQASAAAPLYFSEVKLDN 387
Query: 594 KNFLDGGYLNNNPTPILYQEA 656
DGG NNPT I Y EA
Sbjct: 388 LLLQDGGVYANNPTAIAYHEA 408
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,946,996,279
Number of extensions: 41797883
Number of successful extensions: 107220
Number of sequences better than 10.0: 155
Number of HSP's gapped: 105744
Number of HSP's successfully gapped: 160
Length of query: 416
Length of database: 1,061,185,681
Length adjustment: 131
Effective length of query: 285
Effective length of database: 633,018,993
Effective search space: 180410413005
Effective search space used: 180410413005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
5 |
| SH (FL, L) |
0 |
| SF (FL, S) |
3 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |