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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03407-1
Contig ID Contig-U03407-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Contig-U03407-1Q.Seq.d
AATGAACCATTCAAATCAATCAATCATTGATTTCCTNGCCACCGCTTCAN
ACCNAAAGTTGAAAAATTGAGAAAACTTTTAGAGAGTACTCAAGAGAATT
TCAAAAAACTTTGTAAATATTTCGNTGAAGAAGAGGGTAAATCNCAACCT
GAAGAATTTTTNGATATTTTTGGTCGTTTCATTACNTTGTTTGAAAATGC
TACCACCCAATTACAACAACAAAAAGAGGAACAGTTAAAGGAGGAAAAGA
GATTACAACAAAAACAACAACGTCAAGAAAGAGCAGTTAGAAAATTAACC
ACCTCAAATGAATCTGCTTCTGCCTCTCCAAACCATGCTAAATCCACTGA
TGATAAAAGTGATGAAGATGATGATATTGTTAATGATCTTTTAATGGCTG
TTCGTGATGGTGACGCTTTCAGACAAGCAAAAGGTAGAAGAAGAACAACT
CATCAAATCGCTACCTCAAAAATGATTTCAAATAATTTAGATCCTTCTAA
AATTTTACCAACAAGTCCAAATAAAAATTANTTTTTTAATTAAAAAT
Gap no gap
Contig length 547
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3175979
End point 3176469
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03407
List of clone(s) 

est1=SFB143Z,1,548
Translated Amino Acid sequence 
nepfksinh*FPXHRFXPKVEKLRKLLESTQENFKKLCKYFXEEEGKSQPEEFXDIFGRF
ITLFENATTQLQQQKEEQLKEEKRLQQKQQRQERAVRKLTTSNESASASPNHAKSTDDKS
DEDDDIVNDLLMAVRDGDAFRQAKGRRRTTHQIATSKMISNNLDPSKILPTSPNKNXFFN
*k
Translated Amino Acid sequence (All Frames) 
Frame A:
nepfksinh*FPXHRFXPKVEKLRKLLESTQENFKKLCKYFXEEEGKSQPEEFXDIFGRF
ITLFENATTQLQQQKEEQLKEEKRLQQKQQRQERAVRKLTTSNESASASPNHAKSTDDKS
DEDDDIVNDLLMAVRDGDAFRQAKGRRRTTHQIATSKMISNNLDPSKILPTSPNKNXFFN
*k


Frame B:
mnhsnqsiidflatasxxklkn*enf*rvlkrisknfvnisxkkrvnxnlknfxiflvvs
lxclkmlppnynnkkrns*rrkrdynknnnvkkeqlen*ppqmnlllplqtmlnplmikv
mkmmillmif*wlfvmvtlsdkqkveeeqlikslpqk*fqii*illkfyqqvqikixfli
kn


Frame C:
*tiqinqslisxpplxtxs*kiektfreysrefqktl*ifr*rrg*ixt*rifxyfwsfh
yxv*kcyhpitttkrgtvkggkeittktttsrkss*kinhlk*icfclskpc*ih***k*
*r**yc**sfngcs*w*rfqtskr*kknnssnrylkndfk*frsf*nftnksk*klxf*l
k
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03407-1 (Contig-U03407-1Q)
/CSM_Contig/Contig-U03407-1Q.Seq.d
         (547 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Conti...  1009  0.0
Contig-U14016-1 (Contig-U14016-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14077-1 (Contig-U14077-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11010-1 (Contig-U11010-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10719-1 (Contig-U10719-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14568-1 (Contig-U14568-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U14497-1 (Contig-U14497-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U12429-1 (Contig-U12429-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    36  0.038

>Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Contig-U03407-1Q.Seq.d
          Length = 547

 Score = 1009 bits (509), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaaccattcaaatcaatcaatcattgatttcctngccaccgcttcanaccnaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aatgaaccattcaaatcaatcaatcattgatttcctngccaccgcttcanaccnaaagtt 60

                                                                       
Query: 61  gaaaaattgagaaaacttttagagagtactcaagagaatttcaaaaaactttgtaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaaattgagaaaacttttagagagtactcaagagaatttcaaaaaactttgtaaatat 120

                                                                       
Query: 121 ttcgntgaagaagagggtaaatcncaacctgaagaatttttngatatttttggtcgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcgntgaagaagagggtaaatcncaacctgaagaatttttngatatttttggtcgtttc 180

                                                                       
Query: 181 attacnttgtttgaaaatgctaccacccaattacaacaacaaaaagaggaacagttaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attacnttgtttgaaaatgctaccacccaattacaacaacaaaaagaggaacagttaaag 240

                                                                       
Query: 241 gaggaaaagagattacaacaaaaacaacaacgtcaagaaagagcagttagaaaattaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggaaaagagattacaacaaaaacaacaacgtcaagaaagagcagttagaaaattaacc 300

                                                                       
Query: 301 acctcaaatgaatctgcttctgcctctccaaaccatgctaaatccactgatgataaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acctcaaatgaatctgcttctgcctctccaaaccatgctaaatccactgatgataaaagt 360

                                                                       
Query: 361 gatgaagatgatgatattgttaatgatcttttaatggctgttcgtgatggtgacgctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatgaagatgatgatattgttaatgatcttttaatggctgttcgtgatggtgacgctttc 420

                                                                       
Query: 421 agacaagcaaaaggtagaagaagaacaactcatcaaatcgctacctcaaaaatgatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agacaagcaaaaggtagaagaagaacaactcatcaaatcgctacctcaaaaatgatttca 480

                                                             
Query: 481 aataatttagatccttctaaaattttaccaacaagtccaaataaaaatta 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aataatttagatccttctaaaattttaccaacaagtccaaataaaaatta 530


>Contig-U14016-1 (Contig-U14016-1Q) /CSM_Contig/Contig-U14016-1Q.Seq.d
          Length = 441

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 343 tccactgatgataaaagtgatgaagatgatga 374
           |||| ||||||| ||||||||||| |||||||
Sbjct: 218 tccaatgatgatgaaagtgatgaaaatgatga 187


>Contig-U14077-1 (Contig-U14077-1Q) /CSM_Contig/Contig-U14077-1Q.Seq.d
          Length = 953

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 468 aaaaatgatttcaaataat 486
           |||||||||||||||||||
Sbjct: 60  aaaaatgatttcaaataat 78


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9686
Number of Sequences: 6905
Number of extensions: 9686
Number of successful extensions: 1574
Number of sequences better than 10.0: 560
length of query: 547
length of database: 5,674,871
effective HSP length: 16
effective length of query: 531
effective length of database: 5,564,391
effective search space: 2954691621
effective search space used: 2954691621
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.31
Homology vs DNA 
Query= Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Contig-U03407-1Q.Seq.d
         (547 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ398949) Dictyostelium discoideum cDNA clone:dds3e11, 3' e...   541   0.0    2
(AJ812236) Dictyostelium discoideum mRNA for diaphanous-rela...   513   0.0    4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    48   2e-04  6
(AC096070) Rattus norvegicus 4 BAC CH230-20J7 (Children's Ho...    48   0.045  2
(EF394952) Beraeodes minutus isolate L 16S ribosomal RNA gen...    50   0.089  1
(AF186866) Eresia clara isolate 38-1 16S ribosomal RNA gene,...    50   0.089  1
(CU792669) A BAC library has been constructed from PN40024 g...    38   0.15   2
(CV643150) EST921903 Field isolate cDNA library Plasmodium v...    40   0.18   2
(AC121515) Rattus norvegicus strain Brown Norway clone RP31-...    48   0.35   1
(AC087042) Rattus norvegicus strain Brown Norway clone RP31-...    48   0.35   1
(AY747882) Dryas iulia isolate STRI-B-293 16S ribosomal RNA ...    48   0.35   1
(AF186912) Eresia plaginota isolate 38-4 16S ribosomal RNA g...    48   0.35   1
(AF186895) Eresia myia isolate 24-5 16S ribosomal RNA gene, ...    48   0.35   1
(AF186865) Melitaea cinxia isolate 23-13 16S ribosomal RNA g...    48   0.35   1
(AC104740) Homo sapiens chromosome 3 clone RP11-46D21, compl...    48   0.35   1
(CU914719) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.35   1
(CT997816) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.35   1
(AC178321) Strongylocentrotus purpuratus clone R3-1114L16, W...    48   0.35   1
(FD490198) Ltu01b_55_H03_C012.b2 Liriodendron Flower Bud Lib...    32   0.58   3
(Z93384) Caenorhabditis elegans Fosmid H08M01.                     40   0.68   4
(AP010372) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   0.77   2
(AP009835) Lotus japonicus genomic DNA, clone: LjT33L17, TM1...    34   0.79   2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    42   1.0    4
(AC006782) Caenorhabditis elegans clone Y47G6, *** SEQUENCIN...    42   1.4    6
(CR385030) Zebrafish DNA sequence from clone DKEY-114E9.           46   1.4    1
(AC093570) Mus musculus strain C57BL/6J chromosome 5 clone r...    46   1.4    1
(CT963077) M.truncatula DNA sequence from clone MTH2-39L15 o...    46   1.4    1
(AC147472) Medicago truncatula clone mth2-24n18, complete se...    46   1.4    1
(AF186905) Eresia pelonia isolate 38-7 16S ribosomal RNA gen...    46   1.4    1
(AF186861) Eresia burchellii isolate 38-5 16S ribosomal RNA ...    46   1.4    1
(AC084017) Homo sapiens 3 BAC RP11-208P4 (Roswell Park Cance...    46   1.4    1
(AC125652) Rattus norvegicus clone CH230-227C21, *** SEQUENC...    46   1.4    1
(FP017248) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.4    1
(AC078796) Homo sapiens chromosome 3 clone RP11-327L13, WORK...    46   1.4    1
(AL136118) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.4    1
(AL135915) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.4    1
(AC218945) Zea mays chromosome 9 clone CH201-83N14; ZMMBBc00...    46   1.4    1
(AC209852) Zea mays chromosome 3 clone CH201-108J15; ZMMBBc0...    46   1.4    1
(AC185495) Zea mays chromosome 3 clone ZMMBBb-161D19; ZMMBBb...    46   1.4    1
(AC025015) Homo sapiens clone RP11-273F12, WORKING DRAFT SEQ...    46   1.4    1
(DX326286) OR_ABa0246L16.r OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DX314606) OR_ABa0229M15.r OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DX295087) OR_ABa0200K18.f OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DX216354) OR_ABa0091B18.f OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DX207150) OR_ABa0078G08.f OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DX156290) OR_ABa0009A19.r OR_ABa Oryza ridleyi genomic clon...    46   1.4    1
(DE949784) Macropus eugenii DNA, BAC clone: MEB1-147F22_F, 5...    46   1.4    1
(CZ660635) OM__Ba0212J14.r OM__Ba Oryza minuta genomic clone...    46   1.4    1
(CZ040713) OM__Ba0022K24.f OM__Ba Oryza minuta genomic clone...    46   1.4    1
(CC162855) ii59a03.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ...    46   1.4    1
(ES301975) _22Z_B12 Bermudagrass Normalized cDNA Library Cyn...    46   1.4    1
(ES299959) _22Y_A08 Bermudagrass Normalized cDNA Library Cyn...    46   1.4    1
(DY890889) CeleSEQ7365 Cunninghamella elegans pBluescript (E...    46   1.4    1
(DY886397) CeleSEQ2041 Cunninghamella elegans pBluescript (E...    46   1.4    1
(DY885150) CeleSEQ342 Cunninghamella elegans pBluescript (Ec...    46   1.4    1
(DV484371) 5358_C02_F04Z_012 Brachypodium distachyon leaf ES...    46   1.4    1
(DV469377) 5406_G06_M12ZR5_036 Brachypodium distachyon callu...    46   1.4    1
(AJ778515) Populus euphratica EST, clone P0000600002A06F1.         46   1.4    1
(BM023666) fu66e12.x1 zebrafish adult brain Danio rerio cDNA...    46   1.4    1
(BM005016) fu63a08.x1 zebrafish adult brain Danio rerio cDNA...    46   1.4    1
(BI840968) fq41c10.x1 zebrafish adult brain Danio rerio cDNA...    46   1.4    1
(FC863164) PPN040G11-T7 PPN Prunus persica cDNA clone PPN040...    46   1.4    1
(AC109788) Bos taurus clone RP42-377H19, WORKING DRAFT SEQUE...    40   1.5    4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   1.6    6
(EJ034176) 1095454064002 Global-Ocean-Sampling_GS-26-01-01-1...    38   1.7    2
(CU104773) M.truncatula DNA sequence from clone MTH2-194L2 o...    34   2.0    3
(EH016810) USDA-FP_189274 Lysiphlebus testaceipes adult whol...    38   2.1    2
(AC112045) Rattus norvegicus clone CH230-94A1, WORKING DRAFT...    40   2.1    2
(EH016738) USDA-FP_189208 Lysiphlebus testaceipes adult whol...    38   2.2    2
(AC214571) Bos taurus clone CH240-113A7, WORKING DRAFT SEQUE...    34   2.8    6
(AC163659) Mus musculus BAC clone RP24-294C10 from chromosom...    40   3.0    2
(AF172282) Oryza sativa adh1-adh2 region.                          40   3.1    2
(U00796) Dictyostelium discoideum plasmid Ddp1 D2 ORF, D1 OR...    32   3.2    2
(U00691) Dictyostelium discoideum plasmid Ddp1 D2 orf, D1/D3...    32   3.2    2
(AF270470) Cloning vector pBIG, complete sequence.                 32   3.2    2
(AF269237) Cloning vector pTX-GFP, complete sequence.              32   3.2    2
(AF269238) Cloning vector pTX-FLAG, complete sequence.             32   3.2    2
(AF269226) Cloning vector pTIKL, complete sequence.                32   3.2    2
(AF269225) Cloning vector pLITTLE, complete sequence.              32   3.2    2
(EU908846) Expression vector pDM359, complete sequence.            32   3.2    2
(EU908848) Expression vector pDM309, complete sequence.            32   3.2    2
(EU908845) Expression vector pDM310, complete sequence.            32   3.2    2
(EU908847) Expression vector pDM360, complete sequence.            32   3.3    2
(EU912542) Expression vector pDM358, complete sequence.            32   3.3    2
(EU912540) Expression vector pDM320, complete sequence.            32   3.3    2
(EU912539) Expression vector pDM304, complete sequence.            32   3.3    2
(EU912541) Expression vector pDM326, complete sequence.            32   3.3    2
(X53237) D. discoideum plasmid Ddp1 DNA with D-5, G-1 and D-...    32   3.3    2
(DX433949) BE1077_G09_R IASMA L1 HindIII BAC library Vitis v...    38   3.6    2
(AJ757918) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    34   3.7    2
(DU719722) pyo14f02.b1 VT847 Caenorhabditis briggsae genomic...    32   3.7    2
(CU582784) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.7    4
(AM448261) Vitis vinifera contig VV78X160880.22, whole genom...    40   5.1    2
(AC222856) Bos taurus clone CH240-436J18, WORKING DRAFT SEQU...    38   5.4    4
(AP007300) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   5.5    1
(AP006658) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   5.5    1
(AM486294) Vitis vinifera contig VV78X110571.10, whole genom...    44   5.5    1
(AM475880) Vitis vinifera contig VV78X208857.7, whole genome...    44   5.5    1
(AM463195) Vitis vinifera contig VV78X124269.10, whole genom...    44   5.5    1
(AM428443) Vitis vinifera contig VV78X001431.3, whole genome...    44   5.5    1
(AM428299) Vitis vinifera contig VV79X003679.3, whole genome...    44   5.5    1
(AC208727) Populus trichocarpa clone JGIACSB1073-D10, comple...    44   5.5    1
(EU030506) Epactoides hanskii voucher Ale.han.3.3 16S riboso...    44   5.5    1
(EU030505) Epactoides hanskii voucher Ale.han.3.2 16S riboso...    44   5.5    1
(EU030504) Epactoides hanskii voucher Ale.han.3.1 16S riboso...    44   5.5    1
(AC186778) Trichinella spiralis chromosome UNK clone TS195-4...    44   5.5    1
(AC084468) Caenorhabditis briggsae cosmid CB044J14, complete...    44   5.5    1
(AC006805) Caenorhabditis elegans cosmid Y54B9A, complete se...    44   5.5    1
(AC113350) Homo sapiens chromosome 5 clone CTD-2548J21, comp...    44   5.5    1
(AC144500) Canis lupus familiaris clone RP81-387G21, WORKING...    44   5.5    1
(AC131501) Lytechinus variegatus clone Lv53J24, *** SEQUENCI...    44   5.5    1
(CU929848) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(CU694871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(CU694799) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(CU633566) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(CU498984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(AC034168) Homo sapiens chromosome 5 clone RP11-639P6, WORKI...    44   5.5    1
(CU467039) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(CU372902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.5    1
(AP009943) Lotus japonicus genomic DNA, clone: LjB18O14, BM1...    44   5.5    1
(AC224181) Bos taurus clone CH240-447E23, WORKING DRAFT SEQU...    44   5.5    1
(AC202190) Zea mays chromosome unknown clone CH201-162F4; ZM...    44   5.5    1
(AC178136) Strongylocentrotus purpuratus clone R3-3078G23, W...    44   5.5    1
(AC169546) Bos taurus clone CH240-221K22, WORKING DRAFT SEQU...    44   5.5    1
(FP018254) Brassica napus GSS, clone JBnB009J16, end read, p...    44   5.5    1
(FI285791) AdH1157-CPY2-L5TF AdH1 Arachis duranensis genomic...    44   5.5    1
(ET936221) CHO_OF434xm01r1.ab1 CHO_OF Nicotiana tabacum geno...    44   5.5    1
(ER601225) 1093016245854 Global-Ocean-Sampling_GS-36-01-01-2...    44   5.5    1
(ER594550) 1093016215939 Global-Ocean-Sampling_GS-36-01-01-2...    44   5.5    1
(EJ871047) 1093018347359 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.5    1
(EJ832991) 1093017587572 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.5    1
(EJ535016) 1092955252639 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.5    1
(EI051000) hhd0007dc01.g1 hhd Oryza coarctata genomic clone ...    44   5.5    1
(ED772679) GM_WBb0148F22.r GM_WBb Glycine max genomic clone ...    44   5.5    1
(DX827325) ZMMBLb0005O03.f ZMMBLb Zea mays genomic clone ZMM...    44   5.5    1
(DU703344) Bst035871 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU688928) Bst021458 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU687087) Bst019623 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU685755) Bst018291 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU670077) Bst002619 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU669653) Bst002195 lambda03 Boechera stricta genomic clone...    44   5.5    1
(DU293699) 1098421223815 CHORI-243 Ovis aries genomic clone ...    44   5.5    1
(AL004064) F.rubripes GSS sequence, clone 095O03aF4.               44   5.5    1
(CT512711) A BAC library has been constructed from cultivar ...    44   5.5    1
(CT331436) Sus scrofa genomic clone CH242-405C19, genomic su...    44   5.5    1
(CT251255) Sus scrofa genomic clone CH242-165N14, genomic su...    44   5.5    1
(CT077945) Sus scrofa genomic clone CH242-72J23, genomic sur...    44   5.5    1
(AG661949) Macaca fuscata fuscata DNA, clone: MSB2-081N17_R,...    44   5.5    1
(EB491844) 1099341406453 12-DrosW-norm-1P5Kb Drosophila will...    44   5.5    1
(DW282640) UI-S-HH0-adx-i-04-0-UI.s1 UI-S-HH0 Euprymna scolo...    44   5.5    1
(DT619966) ACAH-aaa60b01.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   5.5    1
(DT618870) ACAH-aaa87e01.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   5.5    1
(DT615841) ACAH-aab11g02.g1 Hydra_EST_UCI-10 Hydra magnipapi...    44   5.5    1
(DR445678) AR1023A08 A. gomesiana hemocytes normalized libra...    44   5.5    1
(DN246407) ACAE-aaa29l04.g1 Hydra EST UCI 5 Hydra magnipapil...    44   5.5    1
(AM732455) Cucumis melo subsp. melo EST, clone CI_13-G09-M13R.     44   5.5    1
(CX450586) JGI_XZG22906.rev NIH_XGC_tropGas7 Xenopus (Silura...    44   5.5    1
(CN771448) tad98b06.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   5.5    1
(CF801799) rj52e07.y1 Meloidogyne chitwoodi female SL1 pGEM ...    44   5.5    1
(CF357274) rm83d06.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    44   5.5    1
(EY391380) CAXA9237.fwd CAXA Helobdella robusta Subtracted L...    44   5.5    1
(EV901613) rcbl0_020455.y1 cbl Sus scrofa cDNA 5', mRNA sequ...    44   5.5    1
(ES651769) SA_MX2_02g09_SP6 Dogfish Shark Multiple Tissues, ...    44   5.5    1
(CP000849) Rickettsia bellii OSU 85-389, complete genome.          44   5.5    1
(CP000087) Rickettsia bellii RML369-C, complete genome.            44   5.5    1
(CU929160) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   5.6    5
(AC164015) Bos taurus clone CH240-144A15, *** SEQUENCING IN ...    40   6.3    3
(AC024835) Caenorhabditis elegans cosmid Y57E12B, complete s...    40   6.5    3
(AC011274) Homo sapiens clone RP11-12O12, WORKING DRAFT SEQU...    34   7.5    5
(BZ082706) llf70a03.b1 B.oleracea002 Brassica oleracea genom...    34   7.7    2
(CU818568) A BAC library has been constructed from PN40024 g...    38   7.9    2
(CT529024) A BAC library has been constructed from cultivar ...    38   8.1    2
(DX430794) BE1099_K10_F IASMA L1 HindIII BAC library Vitis v...    38   8.2    2
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    36   8.4    5
(U69730) Homo sapiens Xp22 Cosmids U98B4 and U24F2 (Lawrence...    42   9.5    2
(AC180056) Strongylocentrotus purpuratus clone R3-25P04, WOR...    32   9.8    2
(AC006333) Homo sapiens BAC clone RP11-390E23 from 7, comple...    30   9.9    2
(AC180014) Strongylocentrotus purpuratus clone R3-16K21, WOR...    32   9.9    2
(AC143357) Pan troglodytes BAC clone RP43-171L24 from chromo...    30   9.9    2
(ER498098) 1093015355726 Global-Ocean-Sampling_GS-35-01-01-1...    38   9.9    2
(AC027585) Homo sapiens chromosome 7 clone RP11-216D5 map 7,...    30   9.9    2
(DX117559) OG_ABa0143B24.f OG_ABa Oryza granulata genomic cl...    34   10.0   2

>(BJ398949) Dictyostelium discoideum cDNA clone:dds3e11, 3' end,
           single read.
          Length = 548

 Score =  541 bits (273), Expect(2) = 0.0
 Identities = 276/276 (100%)
 Strand = Plus / Minus


Query: 272 gtcaagaaagagcagttagaaaattaaccacctcaaatgaatctgcttctgcctctccaa 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcaagaaagagcagttagaaaattaaccacctcaaatgaatctgcttctgcctctccaa 218


Query: 332 accatgctaaatccactgatgataaaagtgatgaagatgatgatattgttaatgatcttt 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 accatgctaaatccactgatgataaaagtgatgaagatgatgatattgttaatgatcttt 158


Query: 392 taatggctgttcgtgatggtgacgctttcagacaagcaaaaggtagaagaagaacaactc 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 taatggctgttcgtgatggtgacgctttcagacaagcaaaaggtagaagaagaacaactc 98


Query: 452 atcaaatcgctacctcaaaaatgatttcaaataatttagatccttctaaaattttaccaa 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  atcaaatcgctacctcaaaaatgatttcaaataatttagatccttctaaaattttaccaa 38


Query: 512 caagtccaaataaaaattanttttttaattaaaaat 547
           ||||||||||||||||||||||||||||||||||||
Sbjct: 37  caagtccaaataaaaattanttttttaattaaaaat 2

 Score =  369 bits (186), Expect(2) = 0.0
 Identities = 207/207 (100%)
 Strand = Plus / Minus


Query: 1   aatgaaccattcaaatcaatcaatcattgatttcctngccaccgcttcanaccnaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aatgaaccattcaaatcaatcaatcattgatttcctngccaccgcttcanaccnaaagtt 489


Query: 61  gaaaaattgagaaaacttttagagagtactcaagagaatttcaaaaaactttgtaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaaaaattgagaaaacttttagagagtactcaagagaatttcaaaaaactttgtaaatat 429


Query: 121 ttcgntgaagaagagggtaaatcncaacctgaagaatttttngatatttttggtcgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttcgntgaagaagagggtaaatcncaacctgaagaatttttngatatttttggtcgtttc 369


Query: 181 attacnttgtttgaaaatgctaccacc 207
           |||||||||||||||||||||||||||
Sbjct: 368 attacnttgtttgaaaatgctaccacc 342

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 682,450,618
Number of extensions: 43437424
Number of successful extensions: 3797220
Number of sequences better than 10.0: 185
Length of query: 547
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 524
Effective length of database: 99,442,330,388
Effective search space: 52107781123312
Effective search space used: 52107781123312
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.28
Homology vs Protein 
Query= Contig-U03407-1 (Contig-U03407-1Q) /CSM_Contig/Contig-U03407-1Q.Seq.d
         (547 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5TJ57) RecName: Full=Formin-E; AltName: Full=Diaphanous-relate...   217   1e-55
(Q5TJ55) RecName: Full=Formin-D; AltName: Full=Diaphanous-relate...    40   0.040
AK006902_1(AK006902|pid:none) Mus musculus adult male testis cDN...    39   0.089
BC076585_1(BC076585|pid:none) Mus musculus dishevelled associate...    39   0.089
(Q8BPM0) RecName: Full=Disheveled-associated activator of morpho...    39   0.089
(Q9Y4D1) RecName: Full=Disheveled-associated activator of morpho...    38   0.15
BC133280_1(BC133280|pid:none) Bos taurus dishevelled associated ...    38   0.15
AK021890_1(AK021890|pid:none) Homo sapiens cDNA FLJ11828 fis, cl...    38   0.15
FN357391_19(FN357391|pid:none) Schistosoma mansoni genome sequen...    37   0.34
AK122266_1(AK122266|pid:none) Mus musculus premature mRNA for mK...    37   0.44
AJ008112_1(AJ008112|pid:none) Homo sapiens mRNA for C17orf1 prot...    34   2.2
BC073988_1(BC073988|pid:none) Homo sapiens formin-like 1, mRNA (...    34   2.2
BX324141_1(BX324141|pid:none) Zebrafish DNA sequence from clone ...    34   2.2
BC163491_1(BC163491|pid:none) Danio rerio dishevelled associated...    34   2.2
AL834396_1(AL834396|pid:none) Homo sapiens mRNA; cDNA DKFZp761P0...    33   3.7
BC168411_1(BC168411|pid:none) Synthetic construct Mus musculus c...    33   4.9
(Q6ZPF4) RecName: Full=Formin-like protein 3;  &AK155331_1(AK155...    33   4.9
(Q8IVF7) RecName: Full=Formin-like protein 3; AltName: Full=Form...    33   4.9
AB095934_1(AB095934|pid:none) Homo sapiens mRNA for KIAA2014 pro...    33   4.9
AK127200_1(AK127200|pid:none) Homo sapiens cDNA FLJ45265 fis, cl...    33   4.9
AL162062_1(AL162062|pid:none) Homo sapiens mRNA; cDNA DKFZp762B2...    33   4.9
AL845170_3(AL845170|pid:none) Mouse DNA sequence from clone RP23...    33   4.9
AK170744_1(AK170744|pid:none) Mus musculus NOD-derived CD11c +ve...    33   4.9
AF513716_1(AF513716|pid:none) Mus musculus MAN mRNA, complete cds.     33   4.9
AL845170_2(AL845170|pid:none) Mouse DNA sequence from clone RP23...    33   4.9
BC033181_1(BC033181|pid:none) Homo sapiens formin-like 3, mRNA (...    33   4.9
BC048004_1(BC048004|pid:none) Mus musculus formin-like 2, mRNA (...    33   4.9
AB384661_1(AB384661|pid:none) Synthetic construct DNA, clone: pF...    33   4.9
(A2APV2) RecName: Full=Formin-like protein 2; AltName: Full=Prot...    33   4.9
AB385514_1(AB385514|pid:none) Synthetic construct DNA, clone: pF...    32   8.3
AC012443_1(AC012443|pid:none) Homo sapiens BAC clone RP11-17G11 ...    32   8.3
(Q96PY5) RecName: Full=Formin-like protein 2; AltName: Full=Form...    32   8.3
AK131316_1(AK131316|pid:none) Homo sapiens cDNA FLJ16308 fis, cl...    32   8.3
AB170379_1(AB170379|pid:none) Macaca fascicularis brain cDNA clo...    32   8.3
AK094865_1(AK094865|pid:none) Homo sapiens cDNA FLJ37546 fis, cl...    32   8.3
BC167804_1(BC167804|pid:none) Synthetic construct Homo sapiens c...    32   8.3

>(Q5TJ57) RecName: Full=Formin-E; AltName: Full=Diaphanous-related
            formin dia3;  &AJ812236_1(AJ812236|pid:none)
          Length = 1561

 Score =  217 bits (553), Expect = 1e-55
 Identities = 117/158 (74%), Positives = 118/158 (74%)
 Frame = +1

Query: 55   KVEKLRKLLESTQENFKKLCKYFXEEEGKSQPEEFXDIFGRFITLFENATTXXXXXXXXX 234
            +VEKLRKLLESTQENFKKLCKYF EEEGKSQPEEF DIFGRFITLFENATT
Sbjct: 1404 EVEKLRKLLESTQENFKKLCKYFAEEEGKSQPEEFFDIFGRFITLFENATTQLQQQKEEQ 1463

Query: 235  XXXXXXXXXXXXXXXXAVRKLTTSNESASASPNHAKSTXXXXXXXXXXXXXLLMAVRDGD 414
                            AVRKLTTSNESASASPNHAKST             LLMAVRDGD
Sbjct: 1464 LKEEKRLQQKQQRQERAVRKLTTSNESASASPNHAKSTDDKSDEDDDIVNDLLMAVRDGD 1523

Query: 415  AFRQAKGRRRTTHQIATSKMISNNLDPSKILPTSPNKN 528
            AFRQAKGRRRTTHQIATSKMISNNLDPSKILPTSPNKN
Sbjct: 1524 AFRQAKGRRRTTHQIATSKMISNNLDPSKILPTSPNKN 1561

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 484,678,456
Number of extensions: 5789816
Number of successful extensions: 15402
Number of sequences better than 10.0: 36
Number of HSP's gapped: 15399
Number of HSP's successfully gapped: 36
Length of query: 182
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 61
Effective length of database: 665,703,473
Effective search space: 40607911853
Effective search space used: 40607911853
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.45  gvh: 0.45  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for Contig-U03407-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0