Contig-U16577-1
Contig ID Contig-U16577-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16577-1 (Contig-U16577-1Q) /CSM_Contig/Contig-U16577-1Q.Seq.d
CAAAACATTTAAAATATGTCTTTAGATTTTAAATCTTTAAGCATAAACGG
TGAATACCTCGACTCCTAAATCGATGAAAGACCGGTAGCAAACCTGCGAT
AATTCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACA
TGATGACATCGGTCCTTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGT
CCTGATAGAATCCCTTTTGGGTGTGTCTATTGAACTTGATTAGATGGTGG
TAAAAAGTGCGCGAGTGCATAGCAGCTTCGTCCTAATAAACTATGCGAGG
ACCGCCCGAAATGAGCCAAATGTTAATCAAGGGAGATAGATAACGCCTGA
TTGGACGTATGCCTAGGGTATCTTTCCGTCTGTTGCCCCGCAAGGGGGGG
CTTACTGGGTGACTTAGGCTACTATGTTGTAATTCTCTCGATTTGTCACT
GTCATTCGGCTAGCATTTAGAGGTTAACGTAATCAATATACATTGGTCAC
AAAAAACTTTTTAATGGTGGAAGGTAAATTTAATGTCACTAATAATCGGT
CCGTCAAATTGGTTAGTTAGAGGGCATTAAGCGTGCTGAAAGCTATTAGA
AAGGATCAATTGTGTTGATTCCGACCTATCTCTAATATGTTAGTCGGGTA
TGTCCGGCAGTTTAGCGGCAGGGGGAACGGTGTACGCGCTGGGTTTCTGG
CCACCGTTGCAGTAGCAGGTAAGATCTGCGTAATACTAGTACTTGTCCGA
AAG

Gap no gap
Contig length 753
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4916943
End point 4917347
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 7
Link to clone list U16577
List of clone(s)

est1=FC-IC1189F,1,683
est2=FC-IC1189Z,1,627
est3=FC-IC1291E,1,684
est4=SSL891E,1,609
est5=VHC677Z,2,753
est6=VHJ830F,15,562
est7=VHM367Z,19,735
Translated Amino Acid sequence
qni*nmsldfkslsingeylds*iderpvanlr*ft*iaaywds*nvert**hrsfrirc
ytwvrvvliesllgvsield*mvvksarvhssfvlinyartarnepnvnqgr*itpdwty
a*gifpsvapqggaywvt*atml*fsrfvtvirlafrg*rnqytlvtknflmvegkfnvt
nnrsvklvs*ralsvlkairkdqlc*FRPISNMLVGYVRQFSGRGNGVRAGFLATVAVAG
KICVILVLVRK


Translated Amino Acid sequence (All Frames)
Frame A:
qni*nmsldfkslsingeylds*iderpvanlr*ft*iaaywds*nvert**hrsfrirc
ytwvrvvliesllgvsield*mvvksarvhssfvlinyartarnepnvnqgr*itpdwty
a*gifpsvapqggaywvt*atml*fsrfvtvirlafrg*rnqytlvtknflmvegkfnvt
nnrsvklvs*ralsvlkairkdqlc*FRPISNMLVGYVRQFSGRGNGVRAGFLATVAVAG
KICVILVLVRK


Frame B:
ktfkicl*ilnl*a*tvntstpksmkdr*qtcdnslelqptgivemlnahddigpfglgv
ilg*ews**npfwvcllnlirww*kvreciaass**tmrgppemsqmlikgdr*rligrm
prvsfrllprkggltg*lrllccnsldlslsfg*hlevnvinihwsqktf*wwkvnlmsl
iigpsnwlvrgh*ac*kllerincvdsdlslic*sgmsgslaaggtvyalgfwpplq*qv
rsa*y*ylse


Frame C:
khlkyvfrf*ifkhkr*iprllnr*ktgskpaiihlncsllg*lkc*thmmtsvlsd*vl
ylgesgpdripfgcvy*t*ldggkkcasa*qlrpnklcedrpk*akc*sreidna*ldvc
lgylsvccparggllgdlgyyvvilsichchsasi*rlt*siyighkklfnggr*i*ch*
*svrqig*legikraesy*kgsivliptyl*yvsrvcpav*rqgerctrwvsghrcssr*
dlrntstcpk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16577-1 (Contig-U16577-1Q)
/CSM_Contig/Contig-U16577-1Q.Seq.d
(753 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16577-1 (Contig-U16577-1Q) /CSM_Contig/Conti... 1451 0.0
Contig-U16602-1 (Contig-U16602-1Q) /CSM_Contig/Conti... 351 1e-96
Contig-U16256-1 (Contig-U16256-1Q) /CSM_Contig/Conti... 283 2e-76
Contig-U15718-1 (Contig-U15718-1Q) /CSM_Contig/Conti... 283 2e-76
Contig-U14096-1 (Contig-U14096-1Q) /CSM_Contig/Conti... 283 2e-76
Contig-U13298-1 (Contig-U13298-1Q) /CSM_Contig/Conti... 283 2e-76
Contig-U15495-1 (Contig-U15495-1Q) /CSM_Contig/Conti... 278 1e-74
Contig-U16366-1 (Contig-U16366-1Q) /CSM_Contig/Conti... 276 5e-74
Contig-U16328-1 (Contig-U16328-1Q) /CSM_Contig/Conti... 276 5e-74
Contig-U15932-1 (Contig-U15932-1Q) /CSM_Contig/Conti... 272 7e-73

>Contig-U16577-1 (Contig-U16577-1Q) /CSM_Contig/Contig-U16577-1Q.Seq.d
Length = 753

Score = 1451 bits (732), Expect = 0.0
Identities = 746/753 (99%)
Strand = Plus / Plus


Query: 1 caaaacatttaaaatatgtctttagattttaaatctttaagcataaacggtgaatacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaacatttaaaatatgtctttagattttaaatctttaagcataaacggtgaatacctc 60


Query: 61 gactcctaaatcgatgaaagaccggtagcaaacctgcgataattcacttgaattgcagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gactcctaaatcgatgaaagaccggtagcaaacctgcgataattcacttgaattgcagcc 120


Query: 121 tactgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tactgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgt 180


Query: 181 tatacttgggtgagagtggtcctgatagaatcccttttgggtgtgtctattgaacttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatacttgggtgagagtggtcctgatagaatcccttttgggtgtgtctattgaacttgat 240


Query: 241 tagatggtggtaaaaagtgcgcgagtgcatagcagcttcgtcctaataaactatgcgagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagatggtggtaaaaagtgcgcgagtgcatagcagcttcgtcctaataaactatgcgagg 300


Query: 301 accgcccgaaatgagccaaatgttaatcaagggagatagataacgcctgattggacgtat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accgcccgaaatgagccaaatgttaatcaagggagatagataacgcctgattggacgtat 360


Query: 361 gcctagggtatctttccgtctgttgccccgcaannnnnnncttactgggtgacttaggct 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 gcctagggtatctttccgtctgttgccccgcaagggggggcttactgggtgacttaggct 420


Query: 421 actatgttgtaattctctcgatttgtcactgtcattcggctagcatttagaggttaacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 actatgttgtaattctctcgatttgtcactgtcattcggctagcatttagaggttaacgt 480


Query: 481 aatcaatatacattggtcacaaaaaactttttaatggtggaaggtaaatttaatgtcact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatcaatatacattggtcacaaaaaactttttaatggtggaaggtaaatttaatgtcact 540


Query: 541 aataatcggtccgtcaaattggttagttagagggcattaagcgtgctgaaagctattaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aataatcggtccgtcaaattggttagttagagggcattaagcgtgctgaaagctattaga 600


Query: 601 aaggatcaattgtgttgattccgacctatctctaatatgttagtcgggtatgtccggcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaggatcaattgtgttgattccgacctatctctaatatgttagtcgggtatgtccggcag 660


Query: 661 tttagcggcagggggaacggtgtacgcgctgggtttctggccaccgttgcagtagcaggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttagcggcagggggaacggtgtacgcgctgggtttctggccaccgttgcagtagcaggt 720


Query: 721 aagatctgcgtaatactagtacttgtccgaaag 753
|||||||||||||||||||||||||||||||||
Sbjct: 721 aagatctgcgtaatactagtacttgtccgaaag 753


>Contig-U16602-1 (Contig-U16602-1Q) /CSM_Contig/Contig-U16602-1Q.Seq.d
Length = 1355

Score = 351 bits (177), Expect = 1e-96
Identities = 198/201 (98%), Gaps = 3/201 (1%)
Strand = Plus / Plus


Query: 1 caaaacatttaaaatatgtctttagattttaaatctttaagcataaacggtgaatacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 caaaacatttaaaatatgtctttagattttaaatctttaagcataaacggtgaatacctc 73


Query: 61 gactcctaaatcgatgaaagaccggtagcaaacctgcgataattcacttgaattgcagcc 120
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 74 gactcctaaatcgatgaa-gaccg-tagcaaac-tgcgataattcacttgaattgcagcc 130


Query: 121 tactgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tactgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgt 190


Query: 181 tatacttgggtgagagtggtc 201
|||||||||||||||||||||
Sbjct: 191 tatacttgggtgagagtggtc 211


>Contig-U16256-1 (Contig-U16256-1Q) /CSM_Contig/Contig-U16256-1Q.Seq.d
Length = 2605

Score = 283 bits (143), Expect = 2e-76
Identities = 164/167 (98%), Gaps = 3/167 (1%)
Strand = Plus / Plus


Query: 35 ctttaagcataaacggtgaatacctcgactcctaaatcgatgaaagaccggtagcaaacc 94
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 ctttaagcataaacggtgaatacctcgactcctaaatcgatgaa-gaccg-tagcaaac- 57


Query: 95 tgcgataattcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tgcgataattcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgat 117


Query: 155 gacatcggtcctttcggattaggtgttatacttgggtgagagtggtc 201
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gacatcggtcctttcggattaggtgttatacttgggtgagagtggtc 164


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5360
Number of Sequences: 8402
Number of extensions: 5360
Number of successful extensions: 597
Number of sequences better than 10.0: 99
length of query: 753
length of database: 8,075,542
effective HSP length: 16
effective length of query: 737
effective length of database: 7,941,110
effective search space: 5852598070
effective search space used: 5852598070
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.12
Homology vs DNA
Query= Contig-U16577-1 (Contig-U16577-1Q) /CSM_Contig/Contig-U16577-1Q.Seq.d
(753 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU272240) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 652 0.0 3
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 595 0.0 4
(AU272381) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 595 0.0 4
(AU272380) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 595 0.0 3
(AU272241) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 595 0.0 4
(BJ414970) Dictyostelium discoideum cDNA clone:ddv21d04, 5' ... 595 0.0 3
(X00601) Dictyostelium discoideum ribosomal RNA gene. 367 0.0 6
(BJ423783) Dictyostelium discoideum cDNA clone:ddv50l08, 5' ... 882 0.0 2
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri... 513 0.0 6
(BJ433184) Dictyostelium discoideum cDNA clone:ddv21d04, 3' ... 438 0.0 3
(BJ424289) Dictyostelium discoideum cDNA clone:ddv51p23, 5' ... 262 1e-82 2
(AM282596) Dictyostelium mucoroides 18S rRNA gene (partial),... 178 3e-71 2
(AM282597) Dictyostelium mucoroides 18S rRNA gene (partial),... 178 3e-71 2
(BJ333022) Dictyostelium discoideum cDNA clone:dda41o05, 5' ... 214 3e-71 2
(BJ396385) Dictyostelium discoideum cDNA clone:dds42b20, 5' ... 214 3e-71 2
(BJ391015) Dictyostelium discoideum cDNA clone:dds14m15, 5' ... 214 3e-71 2
(BJ387961) Dictyostelium discoideum cDNA clone:dds7k02, 5' e... 214 3e-71 2
(BJ332097) Dictyostelium discoideum cDNA clone:dda37p02, 5' ... 214 3e-71 2
(BJ396145) Dictyostelium discoideum cDNA clone:dds41d18, 5' ... 216 2e-69 2
(AM282599) Dictyostelium mucoroides 18S rRNA gene (partial),... 186 2e-69 3
(EF066487) Dictyostelium mucoroides strain Dmc1 internal tra... 186 2e-69 3
(BJ388083) Dictyostelium discoideum cDNA clone:dds7f24, 5' e... 214 6e-69 2
(BJ359760) Dictyostelium discoideum cDNA clone:ddc2k09, 5' e... 214 6e-69 2
(BJ411221) Dictyostelium discoideum cDNA clone:ddv3a13, 5' e... 214 6e-69 2
(BJ332389) Dictyostelium discoideum cDNA clone:dda38n24, 5' ... 214 6e-69 2
(BJ338142) Dictyostelium discoideum cDNA clone:dda60c07, 5' ... 214 6e-69 2
(BJ332764) Dictyostelium discoideum cDNA clone:dda40b22, 5' ... 214 3e-68 2
(BJ424674) Dictyostelium discoideum cDNA clone:ddv53n05, 5' ... 214 3e-68 2
(BJ419855) Dictyostelium discoideum cDNA clone:ddv37n09, 5' ... 214 3e-68 2
(BJ367368) Dictyostelium discoideum cDNA clone:ddc42o08, 5' ... 216 3e-68 2
(BJ409876) Dictyostelium discoideum cDNA clone:ddv10i12, 5' ... 218 3e-68 2
(BJ421666) Dictyostelium discoideum cDNA clone:ddv43n11, 5' ... 214 3e-68 2
(BJ424747) Dictyostelium discoideum cDNA clone:ddv53o08, 5' ... 210 3e-68 2
(AM282595) Dictyostelium mucoroides 18S rRNA gene (partial),... 186 4e-68 3
(AM282598) Dictyostelium mucoroides 18S rRNA gene (partial),... 186 4e-68 3
(BJ367373) Dictyostelium discoideum cDNA clone:ddc42p12, 5' ... 214 1e-67 2
(BJ361142) Dictyostelium discoideum cDNA clone:ddc9f04, 5' e... 214 1e-67 2
(BJ425067) Dictyostelium discoideum cDNA clone:ddv54c18, 5' ... 216 1e-67 2
(BJ423422) Dictyostelium discoideum cDNA clone:ddv49k06, 5' ... 214 1e-67 2
(BJ393355) Dictyostelium discoideum cDNA clone:dds31d05, 5' ... 214 1e-67 2
(BJ361530) Dictyostelium discoideum cDNA clone:ddc17f17, 5' ... 214 1e-67 2
(BJ393272) Dictyostelium discoideum cDNA clone:dds30b21, 5' ... 214 1e-67 2
(BJ390424) Dictyostelium discoideum cDNA clone:dds22j10, 5' ... 214 1e-67 2
(BJ416183) Dictyostelium discoideum cDNA clone:ddv25p04, 5' ... 218 1e-67 2
(BJ368554) Dictyostelium discoideum cDNA clone:ddc47n02, 5' ... 214 1e-67 2
(BJ362902) Dictyostelium discoideum cDNA clone:ddc24a01, 5' ... 214 1e-67 2
(BJ417250) Dictyostelium discoideum cDNA clone:ddv30a05, 5' ... 214 1e-67 2
(BJ370451) Dictyostelium discoideum cDNA clone:ddc54n02, 5' ... 214 1e-67 2
(BJ323688) Dictyostelium discoideum cDNA clone:dda11d24, 5' ... 214 1e-67 2
(BJ358551) Dictyostelium discoideum cDNA clone:ddc10i06, 5' ... 214 1e-67 2
(BJ395940) Dictyostelium discoideum cDNA clone:dds40b24, 5' ... 214 1e-67 2
(BJ331711) Dictyostelium discoideum cDNA clone:dda36c21, 5' ... 214 1e-67 2
(BJ393940) Dictyostelium discoideum cDNA clone:dds33p02, 5' ... 214 1e-67 2
(BJ327541) Dictyostelium discoideum cDNA clone:dda20f23, 5' ... 216 1e-67 2
(BJ368153) Dictyostelium discoideum cDNA clone:ddc45b17, 5' ... 206 1e-67 2
(AY330646) Dictyostelium clavatum 18S ribosomal RNA gene, pa... 170 4e-67 2
(DQ463371) Dictyostelium macrocephalum 18S ribosomal RNA gen... 170 4e-67 2
(BJ333892) Dictyostelium discoideum cDNA clone:dda44l10, 5' ... 214 4e-67 2
(BJ369688) Dictyostelium discoideum cDNA clone:ddc51m09, 5' ... 214 4e-67 2
(BJ416539) Dictyostelium discoideum cDNA clone:ddv26b19, 5' ... 214 4e-67 2
(BJ390304) Dictyostelium discoideum cDNA clone:dds21n19, 5' ... 214 4e-67 2
(BJ393212) Dictyostelium discoideum cDNA clone:dds30d13, 5' ... 214 4e-67 2
(BJ328892) Dictyostelium discoideum cDNA clone:dda30a05, 5' ... 214 4e-67 2
(BJ339138) Dictyostelium discoideum cDNA clone:dda64d10, 5' ... 214 4e-67 2
(BJ395747) Dictyostelium discoideum cDNA clone:dds40c03, 5' ... 214 4e-67 2
(BJ422943) Dictyostelium discoideum cDNA clone:ddv47e17, 5' ... 214 4e-67 2
(BJ411494) Dictyostelium discoideum cDNA clone:ddv4l18, 5' e... 214 4e-67 2
(BJ324600) Dictyostelium discoideum cDNA clone:dda7h01, 5' e... 214 4e-67 2
(BJ411375) Dictyostelium discoideum cDNA clone:ddv4l06, 5' e... 214 4e-67 2
(BJ332414) Dictyostelium discoideum cDNA clone:dda39d01, 5' ... 214 4e-67 2
(BJ415397) Dictyostelium discoideum cDNA clone:ddv22n12, 5' ... 214 4e-67 2
(BJ363762) Dictyostelium discoideum cDNA clone:ddc28j12, 5' ... 214 4e-67 2
(BJ334117) Dictyostelium discoideum cDNA clone:dda45o01, 5' ... 214 4e-67 2
(BJ323878) Dictyostelium discoideum cDNA clone:dda12n17, 5' ... 214 4e-67 2
(BJ332644) Dictyostelium discoideum cDNA clone:dda39g21, 5' ... 214 4e-67 2
(BJ333576) Dictyostelium discoideum cDNA clone:dda43a09, 5' ... 214 4e-67 2
(BJ327434) Dictyostelium discoideum cDNA clone:dda20n07, 5' ... 214 4e-67 2
(BJ410963) Dictyostelium discoideum cDNA clone:ddv2b17, 5' e... 214 4e-67 2
(BJ331689) Dictyostelium discoideum cDNA clone:dda36l18, 5' ... 214 4e-67 2
(BJ338443) Dictyostelium discoideum cDNA clone:dda61e16, 5' ... 214 4e-67 2
(BJ336003) Dictyostelium discoideum cDNA clone:dda52i09, 5' ... 214 4e-67 2
(BJ351025) Dictyostelium discoideum cDNA clone:dda41d20, 3' ... 214 4e-67 2
(BJ363632) Dictyostelium discoideum cDNA clone:ddc27m13, 5' ... 214 4e-67 2
(BJ360612) Dictyostelium discoideum cDNA clone:ddc7a02, 5' e... 214 4e-67 2
(BJ333899) Dictyostelium discoideum cDNA clone:dda44n09, 5' ... 214 4e-67 2
(BJ394340) Dictyostelium discoideum cDNA clone:dds34a22, 5' ... 214 4e-67 2
(BJ351734) Dictyostelium discoideum cDNA clone:dda44n09, 3' ... 214 4e-67 2
(BJ358858) Dictyostelium discoideum cDNA clone:ddc11m13, 5' ... 214 4e-67 2
(BJ415820) Dictyostelium discoideum cDNA clone:ddv23i19, 5' ... 214 2e-66 2
(BJ350974) Dictyostelium discoideum cDNA clone:dda41i18, 3' ... 214 2e-66 2
(BJ420013) Dictyostelium discoideum cDNA clone:ddv37o21, 5' ... 214 2e-66 2
(BJ339006) Dictyostelium discoideum cDNA clone:dda63e22, 5' ... 214 2e-66 2
(BJ420801) Dictyostelium discoideum cDNA clone:ddv40a14, 5' ... 214 2e-66 2
(BJ418679) Dictyostelium discoideum cDNA clone:ddv33j16, 5' ... 214 2e-66 2
(BJ422613) Dictyostelium discoideum cDNA clone:ddv46c13, 5' ... 214 2e-66 2
(BJ415357) Dictyostelium discoideum cDNA clone:ddv22f09, 5' ... 214 2e-66 2
(BJ363795) Dictyostelium discoideum cDNA clone:ddc28f17, 5' ... 214 2e-66 2
(BJ333150) Dictyostelium discoideum cDNA clone:dda41i18, 5' ... 214 2e-66 2
(BJ394349) Dictyostelium discoideum cDNA clone:dds34d19, 5' ... 214 2e-66 2
(BJ323656) Dictyostelium discoideum cDNA clone:dda11h18, 5' ... 214 2e-66 2
(BJ425283) Dictyostelium discoideum cDNA clone:ddv55a10, 5' ... 214 2e-66 2
(BJ337400) Dictyostelium discoideum cDNA clone:dda57e11, 5' ... 214 2e-66 2
(BJ334219) Dictyostelium discoideum cDNA clone:dda45e17, 5' ... 214 2e-66 2
(BJ419549) Dictyostelium discoideum cDNA clone:ddv36o07, 5' ... 214 2e-66 2
(BJ421147) Dictyostelium discoideum cDNA clone:ddv41j20, 5' ... 214 2e-66 2
(BJ387510) Dictyostelium discoideum cDNA clone:dds3f03, 5' e... 214 2e-66 2
(BJ423397) Dictyostelium discoideum cDNA clone:ddv49g01, 5' ... 214 2e-66 2
(BJ427062) Dictyostelium discoideum cDNA clone:ddv61l04, 5' ... 214 2e-66 2
(BJ333553) Dictyostelium discoideum cDNA clone:dda43l04, 5' ... 214 2e-66 2
(BJ423860) Dictyostelium discoideum cDNA clone:ddv50k15, 5' ... 212 2e-66 2
(BJ328130) Dictyostelium discoideum cDNA clone:dda23f02, 5' ... 214 2e-66 2
(BJ418236) Dictyostelium discoideum cDNA clone:ddv32h05, 5' ... 214 2e-66 2
(BJ426767) Dictyostelium discoideum cDNA clone:ddv60n02, 5' ... 214 2e-66 2
(BJ390732) Dictyostelium discoideum cDNA clone:dds23d15, 5' ... 214 2e-66 2
(BJ413988) Dictyostelium discoideum cDNA clone:ddv17l18, 5' ... 214 2e-66 2
(BJ324807) Dictyostelium discoideum cDNA clone:dda8j05, 5' e... 214 2e-66 2
(BJ331987) Dictyostelium discoideum cDNA clone:dda37g20, 5' ... 214 2e-66 2
(BJ368340) Dictyostelium discoideum cDNA clone:ddc46f07, 5' ... 214 2e-66 2
(BJ445649) Dictyostelium discoideum cDNA clone:ddv60n02, 3' ... 214 2e-66 2
(BJ419963) Dictyostelium discoideum cDNA clone:ddv37d20, 5' ... 214 2e-66 2
(BJ362463) Dictyostelium discoideum cDNA clone:ddc21k21, 5' ... 214 2e-66 2
(BJ391233) Dictyostelium discoideum cDNA clone:dds15a19, 5' ... 214 2e-66 2
(BJ364981) Dictyostelium discoideum cDNA clone:ddc33o17, 5' ... 214 2e-66 2
(BJ369474) Dictyostelium discoideum cDNA clone:ddc50o17, 5' ... 214 2e-66 2
(BJ370514) Dictyostelium discoideum cDNA clone:ddc54k11, 5' ... 214 2e-66 2
(BJ418605) Dictyostelium discoideum cDNA clone:ddv33k08, 5' ... 214 2e-66 2
(BJ410044) Dictyostelium discoideum cDNA clone:ddv11b05, 5' ... 214 2e-66 2
(BJ395419) Dictyostelium discoideum cDNA clone:dds38e24, 5' ... 214 2e-66 2
(BJ392897) Dictyostelium discoideum cDNA clone:dds29h12, 5' ... 214 2e-66 2
(BJ420688) Dictyostelium discoideum cDNA clone:ddv40i06, 5' ... 214 2e-66 2
(BJ421169) Dictyostelium discoideum cDNA clone:ddv41o19, 5' ... 214 2e-66 2
(BJ338325) Dictyostelium discoideum cDNA clone:dda60m24, 5' ... 214 2e-66 2
(BJ358951) Dictyostelium discoideum cDNA clone:ddc12g02, 5' ... 216 2e-66 2
(BJ334179) Dictyostelium discoideum cDNA clone:dda45m09, 5' ... 214 2e-66 2
(BJ367708) Dictyostelium discoideum cDNA clone:ddc43o17, 5' ... 214 2e-66 2
(BJ424211) Dictyostelium discoideum cDNA clone:ddv51b20, 5' ... 214 2e-66 2
(BJ366498) Dictyostelium discoideum cDNA clone:ddc39n03, 5' ... 214 2e-66 2
(BJ366490) Dictyostelium discoideum cDNA clone:ddc39l02, 5' ... 214 2e-66 2
(BJ422180) Dictyostelium discoideum cDNA clone:ddv45j03, 5' ... 214 2e-66 2
(BJ413105) Dictyostelium discoideum cDNA clone:ddv14n06, 5' ... 214 2e-66 2
(BJ393077) Dictyostelium discoideum cDNA clone:dds30c05, 5' ... 214 6e-66 2
(BJ413550) Dictyostelium discoideum cDNA clone:ddv16n01, 5' ... 214 6e-66 2
(BJ393976) Dictyostelium discoideum cDNA clone:dds33i09, 5' ... 214 6e-66 2
(BJ426201) Dictyostelium discoideum cDNA clone:ddv58p06, 5' ... 212 6e-66 2
(BJ382666) Dictyostelium discoideum cDNA clone:ddc45b17, 3' ... 200 6e-66 2
(AF351199) Dictyostelium sphaerocephalum 18S ribosomal RNA g... 170 8e-66 3
(BJ368025) Dictyostelium discoideum cDNA clone:ddc45a04, 5' ... 208 2e-65 2
(BJ388450) Dictyostelium discoideum cDNA clone:dds9j14, 5' e... 214 2e-65 2
(BJ336078) Dictyostelium discoideum cDNA clone:dda52m17, 5' ... 214 2e-65 2
(V00192) Dictyostelium discoideum 5.8S ribosomal RNA. 214 2e-65 2
(AF351197) Dictyostelium mucoroides 18S ribosomal RNA gene, ... 170 3e-65 3
(BJ390041) Dictyostelium discoideum cDNA clone:dds21a02, 5' ... 214 9e-65 2
(BJ331234) Dictyostelium discoideum cDNA clone:dda34a15, 5' ... 208 9e-65 2
(BJ416103) Dictyostelium discoideum cDNA clone:ddv24p22, 5' ... 206 9e-65 2
(BJ410612) Dictyostelium discoideum cDNA clone:ddv1p01, 5' e... 214 9e-65 2
(BJ412538) Dictyostelium discoideum cDNA clone:ddv8p19, 5' e... 206 9e-65 2
(BJ416543) Dictyostelium discoideum cDNA clone:ddv26b24, 5' ... 214 9e-65 2
(BJ365366) Dictyostelium discoideum cDNA clone:ddc35i05, 5' ... 214 9e-65 2
(BJ417698) Dictyostelium discoideum cDNA clone:ddv28a16, 5' ... 214 9e-65 2
(BJ365046) Dictyostelium discoideum cDNA clone:ddc33o23, 5' ... 214 9e-65 2
(BJ412314) Dictyostelium discoideum cDNA clone:ddv7h23, 5' e... 214 4e-64 2
(BJ366464) Dictyostelium discoideum cDNA clone:ddc39f05, 5' ... 206 4e-64 2
(BJ387385) Dictyostelium discoideum cDNA clone:dds2o01, 5' e... 214 4e-64 2
(BJ330823) Dictyostelium discoideum cDNA clone:dda32k19, 5' ... 206 4e-64 2
(AF219102) Dictyostelium giganteum 18S ribosomal RNA gene, p... 178 5e-64 3
(AM282592) Dictyostelium giganteum 18S rRNA gene (partial), ... 178 5e-64 3
(EF066486) Dictyostelium giganteum strain Dg3E internal tran... 178 5e-64 3
(BJ359166) Dictyostelium discoideum cDNA clone:ddc13j06, 5' ... 214 1e-63 2
(BJ368639) Dictyostelium discoideum cDNA clone:ddc47c15, 5' ... 214 1e-63 2
(BJ411144) Dictyostelium discoideum cDNA clone:ddv3m03, 5' e... 206 6e-63 2
(BJ379078) Dictyostelium discoideum cDNA clone:ddc33o17, 3' ... 202 6e-63 2
(AM282604) Dictyostelium sphaerocephalum 18S rRNA gene (part... 170 7e-63 3
(AM282605) Dictyostelium sphaerocephalum 18S rRNA gene (part... 170 7e-63 3
(AM282603) Dictyostelium sphaerocephalum 18S rRNA gene (part... 170 7e-63 3
(AM282600) Dictyostelium sphaerocephalum 18S rRNA gene (part... 170 7e-63 3
(AM282602) Dictyostelium sphaerocephalum 18S rRNA gene (part... 170 7e-63 3
(EF066488) Dictyostelium sphaerocephalum strain DsppCal1 int... 170 7e-63 3
(BJ335912) Dictyostelium discoideum cDNA clone:dda52c05, 5' ... 214 2e-62 2
(BJ354146) Dictyostelium discoideum cDNA clone:dda52m17, 3' ... 204 2e-62 2
(FJ424827) Dictyostelium purpureum strain QSpu37 17S ribosom... 170 3e-62 3
(FJ424828) Dictyostelium purpureum strain QSpu36 17S ribosom... 170 3e-62 3
(AF219103) Dictyostelium purpureum 18S ribosomal RNA gene, p... 170 3e-62 3
(BJ368161) Dictyostelium discoideum cDNA clone:ddc45d17, 5' ... 198 3e-61 2
(AF219101) Dictyostelium dimigraformum 18S ribosomal RNA gen... 176 4e-61 3
(BJ368352) Dictyostelium discoideum cDNA clone:ddc46i07, 5' ... 192 5e-60 2
(BJ425964) Dictyostelium discoideum cDNA clone:ddv57m14, 5' ... 190 8e-59 2
(BJ414725) Dictyostelium discoideum cDNA clone:ddv20a08, 5' ... 190 8e-59 2
(AU263685) Dictyostelium discoideum vegetative cDNA clone:VS... 200 3e-58 2
(FJ424826) Dictyostelium purpureum strain QSpu4 17S ribosoma... 155 1e-57 3
(BJ395729) Dictyostelium discoideum cDNA clone:dds39o19, 5' ... 139 1e-57 3
(BJ440918) Dictyostelium discoideum cDNA clone:ddv45j03, 3' ... 182 5e-57 2
(BJ331775) Dictyostelium discoideum cDNA clone:dda36d05, 5' ... 208 6e-57 3
(AM282591) Dictyostelium giganteum 18S rRNA gene (partial), ... 147 7e-56 4
(AF219107) Polysphondylium violaceum 18S ribosomal RNA gene,... 165 3e-54 3
(DQ463370) Dictyostelium mucoroides 18S ribosomal RNA gene, ... 170 4e-54 2
(AU261782) Dictyostelium discoideum vegetative cDNA clone:VS... 198 4e-54 2
(FJ424832) Dictyostelium purpureum strain QSpu23 17S ribosom... 147 2e-53 3
(FJ424835) Dictyostelium purpureum strain QSpu27 17S ribosom... 147 2e-53 3
(FJ424833) Dictyostelium purpureum strain QSpu33 17S ribosom... 147 2e-53 3
(FJ424834) Dictyostelium purpureum strain QSpu29 17S ribosom... 147 2e-53 3
(FJ424829) Dictyostelium purpureum strain QSpu1 17S ribosoma... 147 2e-53 3
(FJ424836) Dictyostelium purpureum strain QSpu28 17S ribosom... 147 2e-53 3
(FJ424837) Dictyostelium purpureum strain QSpu26 17S ribosom... 147 2e-53 3
(FJ424831) Dictyostelium purpureum strain QSpu21 17S ribosom... 147 2e-53 3
(FJ424838) Dictyostelium purpureum strain QSpu30 17S ribosom... 147 2e-53 3
(FJ424830) Dictyostelium purpureum strain QSpu6 17S ribosoma... 147 2e-53 3
(BJ428777) Dictyostelium discoideum cDNA clone:ddv1p01, 3' e... 167 2e-53 3
(AU271133) Dictyostelium discoideum vegetative cDNA clone:VS... 198 7e-53 2
(AM282601) Dictyostelium sphaerocephalum 18S rRNA gene (part... 113 2e-52 4
(FJ424845) Dictyostelium purpureum strain QSpu10 17S ribosom... 147 1e-51 2
(FJ424861) Dictyostelium purpureum strain QSpu31 17S ribosom... 147 1e-51 2
(FJ424858) Dictyostelium purpureum strain QSpu34 17S ribosom... 147 1e-51 2
(FJ424842) Dictyostelium purpureum strain QSpu7 17S ribosoma... 147 1e-51 2
(FJ424860) Dictyostelium purpureum strain QSpu35 17S ribosom... 147 1e-51 2
(FJ424859) Dictyostelium purpureum strain QSpu25 17S ribosom... 147 1e-51 2
(FJ424856) Dictyostelium purpureum strain QSpu24 17S ribosom... 147 1e-51 2
(FJ424851) Dictyostelium purpureum strain QSpu16 17S ribosom... 147 1e-51 2
(FJ424862) Dictyostelium purpureum strain QSpu19 17S ribosom... 147 1e-51 2
(FJ424846) Dictyostelium purpureum strain QSpu11 17S ribosom... 147 1e-51 2
(FJ424849) Dictyostelium purpureum strain QSpu14 17S ribosom... 147 1e-51 2
(FJ424850) Dictyostelium purpureum strain QSpu15 17S ribosom... 147 1e-51 2
(FJ424853) Dictyostelium purpureum strain QSpu18 17S ribosom... 147 1e-51 2
(FJ424855) Dictyostelium purpureum strain QSpu22 17S ribosom... 147 1e-51 2
(FJ424848) Dictyostelium purpureum strain QSpu13 17S ribosom... 147 1e-51 2
(FJ424843) Dictyostelium purpureum strain QSpu8 17S ribosoma... 147 1e-51 2
(FJ424854) Dictyostelium purpureum strain QSpu20 17S ribosom... 147 1e-51 2
(FJ424840) Dictyostelium purpureum strain QSpu3 17S ribosoma... 147 1e-51 2
(FJ424847) Dictyostelium purpureum strain QSpu12 17S ribosom... 147 1e-51 2
(FJ424844) Dictyostelium purpureum strain QSpu9 17S ribosoma... 147 1e-51 2
(FJ424857) Dictyostelium purpureum strain QSpu32 17S ribosom... 147 1e-51 2
(FJ424839) Dictyostelium purpureum strain QSpu2 17S ribosoma... 147 1e-51 2
(FJ424852) Dictyostelium purpureum strain QSpu17 17S ribosom... 147 1e-51 2
(FJ424841) Dictyostelium purpureum strain QSpu5 17S ribosoma... 147 1e-51 2
(BJ382936) Dictyostelium discoideum cDNA clone:ddc46i07, 3' ... 214 3e-51 2
(BJ414922) Dictyostelium discoideum cDNA clone:ddv20i19, 5' ... 214 4e-51 1
(BJ379156) Dictyostelium discoideum cDNA clone:ddc33o23, 3' ... 167 6e-50 2
(BJ387390) Dictyostelium discoideum cDNA clone:dds2a08, 5' e... 198 2e-49 2
(BJ388199) Dictyostelium discoideum cDNA clone:dds8l08, 5' e... 204 4e-48 1
(DQ340386) Dictyostelium purpureum 17S ribosomal RNA, 5.8S r... 121 4e-48 3
(BJ419506) Dictyostelium discoideum cDNA clone:ddv36f12, 5' ... 133 5e-44 2
(BJ335056) Dictyostelium discoideum cDNA clone:dda48c22, 5' ... 188 2e-43 1
(BJ333190) Dictyostelium discoideum cDNA clone:dda41d20, 5' ... 188 2e-43 1
(BJ326118) Dictyostelium discoideum cDNA clone:dda15e12, 5' ... 174 3e-39 1
(BJ438389) Dictyostelium discoideum cDNA clone:ddv37d20, 3' ... 168 2e-37 1
(BJ419499) Dictyostelium discoideum cDNA clone:ddv36e11, 5' ... 133 1e-35 2
(BJ427870) Dictyostelium discoideum cDNA clone:ddv63j23, 5' ... 147 7e-31 1
(BJ351381) Dictyostelium discoideum cDNA clone:dda43a09, 3' ... 147 7e-31 1
(BJ391970) Dictyostelium discoideum cDNA clone:dds25j22, 5' ... 133 1e-26 1
(AF219110) Polysphondylium candidum 18S ribosomal RNA gene, ... 94 3e-26 2
(AM282606) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282608) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282613) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282611) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282609) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282612) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282610) Polysphondylium candidum 18S rRNA gene (partial),... 92 1e-25 2
(AM282590) Acytostelium sp. DCB6B 18S rRNA gene (partial), 5... 98 4e-25 2
(AM282589) Acytostelium sp. GCE9 18S rRNA gene (partial), 5.... 98 4e-25 2
(DQ340387) Dictyostelium polycephalum 17S ribosomal RNA, 5.8... 76 2e-24 2
(AF219104) Dictyostelium polycephalum 18S ribosomal RNA gene... 76 2e-24 2
(AF219109) Polysphondylium tenuissimum 18S ribosomal RNA gen... 84 2e-23 2
(AF219108) Polysphondylium pallidum 18S ribosomal RNA gene, ... 84 2e-23 2
(BJ332568) Dictyostelium discoideum cDNA clone:dda39g17, 5' ... 117 6e-22 1
(DQ340388) Polysphondylium pallidum 17S ribosomal RNA, 5.8S ... 78 1e-21 2
(AM282615) Polysphondylium pallidum 18S rRNA gene (partial),... 78 1e-21 2
(AM282614) Polysphondylium pallidum 18S rRNA gene (partial),... 78 1e-21 2
(EC761796) PSE00007316 rw_mgpallid Polysphondylium pallidum ... 78 1e-21 2
(EC761461) PSE00006559 rw_mgpallid Polysphondylium pallidum ... 78 1e-21 2
(AM282588) Acytostelium leptosomum 18S rRNA gene (partial), ... 82 8e-20 2
(EC745088) PSE00008026 rw_mgpallid Polysphondylium pallidum ... 58 1e-15 2
(AM282594) Dictyostelium minutum 18S rRNA gene (partial), 5.... 78 4e-15 2
(BJ416871) Dictyostelium discoideum cDNA clone:ddv27h18, 5' ... 94 9e-15 1
(EC761231) PSE00003782 rw_mgpallid Polysphondylium pallidum ... 78 2e-14 2
(AF219105) Dictyostelium minutum 18S ribosomal RNA gene, par... 78 6e-14 2
(DQ463372) Dictyostelium minutum 18S ribosomal RNA gene, par... 78 6e-14 2
(EC761754) PSE00005638 rw_mgpallid Polysphondylium pallidum ... 78 6e-14 2
(EC760484) PSE00004741 rw_mgpallid Polysphondylium pallidum ... 78 6e-14 2
(EC761168) PSE00005306 rw_mgpallid Polysphondylium pallidum ... 78 9e-13 2
(EC760666) PSE00000143 rw_mgpallid Polysphondylium pallidum ... 78 9e-13 2
(EC745719) PSE00003771 rw_mgpallid Polysphondylium pallidum ... 58 9e-13 2
(EC761944) PSE00007022 rw_mgpallid Polysphondylium pallidum ... 78 1e-10 2
(EC761717) PSE00002953 rw_mgpallid Polysphondylium pallidum ... 78 1e-10 2
(AM282593) Dictyostelium minutum 18S rRNA gene (partial), 5.... 78 5e-10 1
(EC762408) PSE00006908 rw_mgpallid Polysphondylium pallidum ... 78 5e-10 1
(EC762316) PSE00008147 rw_mgpallid Polysphondylium pallidum ... 78 5e-10 1
(EC761245) PSE00004748 rw_mgpallid Polysphondylium pallidum ... 78 5e-10 1
(AM282607) Polysphondylium candidum 18S rRNA gene (partial),... 62 7e-10 2
(DQ340389) Dictyostelium fasciculatum 17S ribosomal RNA, 5.8... 46 4e-08 2
(AF219106) Dictyostelium aureostipes 18S ribosomal RNA gene,... 46 4e-08 2
(AY170307) Dictyostelium exiguum 18S ribosomal RNA gene, par... 46 4e-08 2
(EU672876) Dictyostelium sp. MR-2008 internal transcribed sp... 70 5e-08 2
(EC745301) PSE00005759 rw_mgpallid Polysphondylium pallidum ... 70 1e-07 1
(AU271134) Dictyostelium discoideum vegetative cDNA clone:VS... 70 1e-07 1
(BJ335838) Dictyostelium discoideum cDNA clone:dda51b23, 5' ... 70 1e-07 1
(EC745578) PSE00002246 rw_mgpallid Polysphondylium pallidum ... 48 4e-05 2
(BJ367453) Dictyostelium discoideum cDNA clone:ddc42e19, 5' ... 60 1e-04 1
(EC744808) PSE00001360 rw_mgpallid Polysphondylium pallidum ... 56 0.002 1
(EU115806) Dictyostelium discoideum Ddi2487 RNA, complete se... 54 0.008 1
(EU115793) Dictyostelium discoideum Ddi2474 RNA, complete se... 54 0.008 1
(BJ419079) Dictyostelium discoideum cDNA clone:ddv34p24, 5' ... 54 0.008 1
(EU115914) Dictyostelium discoideum Ddi2595 RNA, complete se... 52 0.031 1
(EU115791) Dictyostelium discoideum Ddi2472 RNA, complete se... 52 0.031 1
(EU115703) Dictyostelium discoideum Ddi2384 RNA, complete se... 52 0.031 1
(EU115660) Dictyostelium discoideum Ddi2341 RNA, complete se... 52 0.031 1
(AC141900) Mus musculus BAC clone RP23-47I1 from chromosome ... 50 0.12 1
(AC131717) Mus musculus chromosome 12 clone RP23-167A18, com... 50 0.12 1
(AC104920) Mus musculus chromosome 10, clone RP23-360H23, co... 50 0.12 1
(EU115603) Dictyostelium discoideum Ddi2284 RNA, complete se... 50 0.12 1
(EU115582) Dictyostelium discoideum Ddi2263 RNA, complete se... 50 0.12 1
(AC123607) Mus musculus chromosome 10 clone RP24-500O19 map ... 50 0.12 1
(AC101412) Mus musculus clone RP23-121B9, LOW-PASS SEQUENCE ... 50 0.12 1
(EC745666) PSE00000144 rw_mgpallid Polysphondylium pallidum ... 50 0.12 1
(EU115784) Dictyostelium discoideum Ddi2465 RNA, complete se... 48 0.49 1
(EU115506) Dictyostelium discoideum Ddi2187 RNA, complete se... 48 0.49 1
(EU115494) Dictyostelium discoideum Ddi2175 RNA, complete se... 48 0.49 1
(AC221450) Bos taurus clone CH240-410G4, WORKING DRAFT SEQUE... 48 0.49 1
(AC185024) Bos taurus clone CH240-273O17, WORKING DRAFT SEQU... 48 0.49 1
(EC745875) PSE00004337 rw_mgpallid Polysphondylium pallidum ... 48 0.49 1
(AC158636) Mus musculus 10 BAC RP23-402A24 (Roswell Park Can... 46 1.9 1
(AC155709) Mus musculus 10 BAC RP24-200F4 (Roswell Park Canc... 46 1.9 1
(EU115980) Dictyostelium discoideum Ddi2661 RNA, complete se... 46 1.9 1
(EU115794) Dictyostelium discoideum Ddi2475 RNA, complete se... 46 1.9 1
(EU115685) Dictyostelium discoideum Ddi2366 RNA, complete se... 46 1.9 1
(EU115399) Dictyostelium discoideum Ddi2080 RNA, complete se... 46 1.9 1
(AC096412) Rattus norvegicus clone CH230-105H2, *** SEQUENCI... 46 1.9 1
(BG798242) ic07d04.y1 Kaestner ngn3 - - Mus musculus cDNA 5'... 46 1.9 1
(FH555685) CHO_OF4498xf21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 6.4 3
(AC182766) Pan troglodytes BAC clone CH251-433B9 from chromo... 44 7.7 1
(EU115924) Dictyostelium discoideum Ddi2605 RNA, complete se... 44 7.7 1
(EU115915) Dictyostelium discoideum Ddi2596 RNA, complete se... 44 7.7 1
(EU115702) Dictyostelium discoideum Ddi2383 RNA, complete se... 44 7.7 1
(EU115562) Dictyostelium discoideum Ddi2243 RNA, complete se... 44 7.7 1
(EU115310) Dictyostelium discoideum Ddi1991 RNA, complete se... 44 7.7 1
(EU115226) Dictyostelium discoideum Ddi1907 RNA, complete se... 44 7.7 1
(AL356131) Human DNA sequence from clone RP1-91N13 on chromo... 44 7.7 1
(AL353787) Human DNA sequence from clone RP11-667H17 on chro... 44 7.7 1
(AL035688) Human DNA sequence from clone RP1-173A13 on chrom... 44 7.7 1
(CU861555) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.7 1
(AC201182) Strongylocentrotus purpuratus clone R3-14O1, WORK... 44 7.7 1
(AC181654) Strongylocentrotus purpuratus clone R3-3040P22, W... 44 7.7 1
(AC175980) Strongylocentrotus purpuratus clone R3-17G20, WOR... 44 7.7 1
(EK333058) 1095467030866 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1
(EK197738) 1095460045127 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1
(EK180182) 1095458117830 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1
(EI885860) CAH1-70K12TR CAA1Ba Cicer arietinum genomic clone... 44 7.7 1
(EI885821) CAH1-70C24TR CAA1Ba Cicer arietinum genomic clone... 44 7.7 1
(EI686950) SB_BBd03-C20.F SB_BBd Sorghum bicolor genomic 5',... 44 7.7 1
(BZ008178) oei14h09.g1 B.oleracea002 Brassica oleracea genom... 44 7.7 1

>(AU272240) Dictyostelium discoideum gamete cDNA clone:FC-IC1189, 5'
end single read.
Length = 681

Score = 652 bits (329), Expect(3) = 0.0
Identities = 331/332 (99%)
Strand = Plus / Minus


Query: 62 actcctaaatcgatgaaagaccggtagcaaacctgcgataattcacttgaattgcagcct 121
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcntaaatcgatgaaagaccggtagcaaacctgcgataattcacttgaattgcagcct 562


Query: 122 actgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgggatagttgaaatgttgaacgcacatgatgacatcggtcctttcggattaggtgtt 502


Query: 182 atacttgggtgagagtggtcctgatagaatcccttttgggtgtgtctattgaacttgatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacttgggtgagagtggtcctgatagaatcccttttgggtgtgtctattgaacttgatt 442


Query: 242 agatggtggtaaaaagtgcgcgagtgcatagcagcttcgtcctaataaactatgcgagga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatggtggtaaaaagtgcgcgagtgcatagcagcttcgtcctaataaactatgcgagga 382


Query: 302 ccgcccgaaatgagccaaatgttaatcaagggagatagataacgcctgattggacgtatg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgcccgaaatgagccaaatgttaatcaagggagatagataacgcctgattggacgtatg 322


Query: 362 cctagggtatctttccgtctgttgccccgcaa 393
||||||||||||||||||||||||||||||||
Sbjct: 321 cctagggtatctttccgtctgttgccccgcaa 290

Score = 438 bits (221), Expect(3) = 0.0
Identities = 221/221 (100%)
Strand = Plus / Minus


Query: 401 cttactgggtgacttaggctactatgttgtaattctctcgatttgtcactgtcattcggc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cttactgggtgacttaggctactatgttgtaattctctcgatttgtcactgtcattcggc 223


Query: 461 tagcatttagaggttaacgtaatcaatatacattggtcacaaaaaactttttaatggtgg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tagcatttagaggttaacgtaatcaatatacattggtcacaaaaaactttttaatggtgg 163


Query: 521 aaggtaaatttaatgtcactaataatcggtccgtcaaattggttagttagagggcattaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaggtaaatttaatgtcactaataatcggtccgtcaaattggttagttagagggcattaa 103


Query: 581 gcgtgctgaaagctattagaaaggatcaattgtgttgattc 621
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcgtgctgaaagctattagaaaggatcaattgtgttgattc 62

Score = 123 bits (62), Expect(3) = 0.0
Identities = 62/62 (100%)
Strand = Plus / Minus


Query: 622 cgacctatctctaatatgttagtcgggtatgtccggcagtttagcggcagggggaacggt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgacctatctctaatatgttagtcgggtatgtccggcagtttagcggcagggggaacggt 3


Query: 682 gt 683
||
Sbjct: 2 gt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 634,034,344
Number of extensions: 31465340
Number of successful extensions: 2261887
Number of sequences better than 10.0: 348
Length of query: 753
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 729
Effective length of database: 99,340,224,878
Effective search space: 72419023936062
Effective search space used: 72419023936062
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.28
Homology vs Protein
Query= Contig-U16577-1 (Contig-U16577-1Q) /CSM_Contig/Contig-U16577-1Q.Seq.d
(753 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,299,395,813
Number of extensions: 26115847
Number of successful extensions: 41355
Number of sequences better than 10.0: 0
Number of HSP's gapped: 41339
Number of HSP's successfully gapped: 0
Length of query: 251
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 125
Effective length of database: 649,361,233
Effective search space: 81170154125
Effective search space used: 81170154125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.84 gvh: 0.44 alm: 0.20 top: 0.60 tms: 0.07 mit: 0.52 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U16577-1 is nuc

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 2