| Contig-U16576-1 |
| Contig ID |
Contig-U16576-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
2165 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
4569931 |
| End point |
4567767 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
21 |
| Number of EST |
21 |
| Link to clone list |
U16576 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
Query= Contig-U16576-1 (Contig-U16576-1Q)
/CSM_Contig/Contig-U16576-1Q.Seq.d
(2165 letters)
Database: CSM
8402 sequences; 8,075,542 total letters
Score E
Sequences producing significant alignments: (bits) Value
Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Conti... 2365 0.0
Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Conti... 690 0.0
Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Conti... 62 4e-09
Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Conti... 52 4e-06
Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Conti... 52 4e-06
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U13543-1 (Contig-U13543-1Q) /CSM_Contig/Conti... 40 0.014
Contig-U12170-1 (Contig-U12170-1Q) /CSM_Contig/Conti... 40 0.014
>Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Contig-U16576-1Q.Seq.d
Length = 2165
Score = 2365 bits (1193), Expect = 0.0
Identities = 1207/1214 (99%)
Strand = Plus / Plus
Query: 952 tctattgaaaaagaaacaaaatcatccacaataactgatcaatttaaattatcaattgaa 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 tctattgaaaaagaaacaaaatcatccacaataactgatcaatttaaattatcaattgaa 1011
Query: 1012 aaacaacttcaaagtcaattagaaaataaaaagaaaccagtacaagttactgaagataat 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 aaacaacttcaaagtcaattagaaaataaaaagaaaccagtacaagttactgaagataat 1071
Query: 1072 agtagtagtgatggatcaacatcaactttaacatcattaactaaagatagagttaaaatg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 agtagtagtgatggatcaacatcaactttaacatcattaactaaagatagagttaaaatg 1131
Query: 1132 aaaggtagacaagcaccaagtaaaagtcataaagcaccaggttcaacttcaacttcaaat 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 aaaggtagacaagcaccaagtaaaagtcataaagcaccaggttcaacttcaacttcaaat 1191
Query: 1192 ggtggtggtgatgatgatgtgggtagtgatcaacaaccatcattattatcaaaagcatta 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 ggtggtggtgatgatgatgtgggtagtgatcaacaaccatcattattatcaaaagcatta 1251
Query: 1252 gaaagtaataaaaataatgaatcatctccaactactaaaaagaaaattgtattaccacct 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 gaaagtaataaaaataatgaatcatctccaactactaaaaagaaaattgtattaccacct 1311
Query: 1312 ggtgcagtcggtggaataatggggtcaatggcatcattggcaatggaagcacnnnnnnng 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1312 ggtgcagtcggtggaataatggggtcaatggcatcattggcaatggaagcacaaaaaaag 1371
Query: 1372 aaaatggaaattgaaaataataaacttttatcaaatgttttaaaggatgaacctgcagca 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 aaaatggaaattgaaaataataaacttttatcaaatgttttaaaggatgaacctgcagca 1431
Query: 1432 ccaaatttcgttagaggtagatcacaatctgtatcagtcacatcaacattgaaacaagat 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 ccaaatttcgttagaggtagatcacaatctgtatcagtcacatcaacattgaaacaagat 1491
Query: 1492 ccaaataaatttttaaatcataaaaagagtattgatacttattcaggcctaagagcaaga 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 ccaaataaatttttaaatcataaaaagagtattgatacttattcaggcctaagagcaaga 1551
Query: 1552 ttagttcattgtaaaggtaaaaagagaattttaaccaaagaggttgaaatctcaataaat 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 ttagttcattgtaaaggtaaaaagagaattttaaccaaagaggttgaaatctcaataaat 1611
Query: 1612 tcattgaataaaatggatgcattcgttttagattgtggtattgaaaattcaaatgttggt 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 tcattgaataaaatggatgcattcgttttagattgtggtattgaaaattcaaatgttggt 1671
Query: 1672 ggtgaatcagttgatagtaattcacattctaccattttcacttggtatggctcaaaatca 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 ggtgaatcagttgatagtaattcacattctaccattttcacttggtatggctcaaaatca 1731
Query: 1732 actgccaataagaaagccaaagcagttgcaattgcagaaatcattaaatctcacgaaaga 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1732 actgccaataagaaagccaaagcagttgcaattgcagaaatcattaaatctcacgaaaga 1791
Query: 1792 ggtggtcatgctacaataattaaattggatgaaggtgatgaaaatgaattattttataaa 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 ggtggtcatgctacaataattaaattggatgaaggtgatgaaaatgaattattttataaa 1851
Query: 1852 cgtattggtggaggttcatcacataaatctactattaatccagatggtggtgatgattta 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1852 cgtattggtggaggttcatcacataaatctactattaatccagatggtggtgatgattta 1911
Query: 1912 gaagcggaattaaattgggcatcatcattcacactattgaagtatttaactgataaagat 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 gaagcggaattaaattgggcatcatcattcacactattgaagtatttaactgataaagat 1971
Query: 1972 caattaattcatattgatactaaatcattatcaatggaattattagagtctgatggtttc 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1972 caattaattcatattgatactaaatcattatcaatggaattattagagtctgatggtttc 2031
Query: 2032 tatgtattggatactgttagtgagttctatgaatggtcaggtagaaattccgatcaatca 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 tatgtattggatactgttagtgagttctatgaatggtcaggtagaaattccgatcaatca 2091
Query: 2092 ttaaaggaacaattccataagaaatgtcaaggaacgtttaaagaataatcaacatagaca 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 ttaaaggaacaattccataagaaatgtcaaggaacgtttaaagaataatcaacatagaca 2151
Query: 2152 atcatgggttgaat 2165
||||||||||||||
Sbjct: 2152 atcatgggttgaat 2165
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataagctt 602
|||||||||||||||||||||||||||||||||||
Sbjct: 568 aagagaaacaagataaagaattggctgataagctt 602
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||||||||||||||||||||||||||
Sbjct: 671 aagagaaacaagataaagaattggctgataa 701
Score = 54.0 bits (27), Expect = 9e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||| ||||||||||||||||||||||
Sbjct: 764 aagagaaaaaagataaagaattggctgataa 794
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
||||||||||||||||||||||||||
Sbjct: 64 aagagaaagaattggctgataaactt 89
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
||||||||||||||||||||||||||
Sbjct: 1 aagagaaagaattggctgataaactt 26
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 279 ttggctgataaacttgcaaaagaa 302
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 691 ttggctgataaacttgcaaaagaa 714
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 75 ttggctgataaacttgcaaaagaa 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| |||||||| |||||||||||||||||
Sbjct: 259 aagaaaaacaagaaaaagaattggctgataa 289
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| |||||||| |||||||||||||||||
Sbjct: 181 aagaaaaacaagaaaaagaattggctgataa 211
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 641 aagagaaagaattggctgataaa 663
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 734 aagagaaagaattggctgataaa 756
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 151 aagagaaagaattggctgataaa 173
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 112 aagagaaagaattggctgataaa 134
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 680 aagataaagaattggctgataaactt 705
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 268 aagaaaaagaattggctgataaactt 293
Score = 40.1 bits (20), Expect = 0.014
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
|||||||||||||||| |||||||
Sbjct: 12 ttggctgataaacttgaaaaagaa 35
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 190 aagaaaaagaattggctgataaa 212
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 576 caagataaagaattggctgataa 598
||||| |||||||||||||||||
Sbjct: 150 caagagaaagaattggctgataa 172
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 576 caagataaagaattggctgataa 598
||||| |||||||||||||||||
Sbjct: 63 caagagaaagaattggctgataa 85
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 773 aagataaagaattggctgataaa 795
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 1 aagagaaagaattggctgataa 22
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 734 aagagaaagaattggctgataa 755
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 112 aagagaaagaattggctgataa 133
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataa 22
|||| |||||||||||||||||
Sbjct: 577 aagataaagaattggctgataa 598
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 641 aagagaaagaattggctgataa 662
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaa 587
||||||||||||| ||||||
Sbjct: 340 aagagaaacaagaaaaagaa 359
Score = 32.2 bits (16), Expect = 3.4
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
|||||||||||| || ||||||||
Sbjct: 784 ttggctgataaagttacaaaagaa 807
>Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Contig-U16574-1Q.Seq.d
Length = 1883
Score = 690 bits (348), Expect = 0.0
Identities = 348/348 (100%)
Strand = Plus / Plus
Query: 952 tctattgaaaaagaaacaaaatcatccacaataactgatcaatttaaattatcaattgaa 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1536 tctattgaaaaagaaacaaaatcatccacaataactgatcaatttaaattatcaattgaa 1595
Query: 1012 aaacaacttcaaagtcaattagaaaataaaaagaaaccagtacaagttactgaagataat 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 aaacaacttcaaagtcaattagaaaataaaaagaaaccagtacaagttactgaagataat 1655
Query: 1072 agtagtagtgatggatcaacatcaactttaacatcattaactaaagatagagttaaaatg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1656 agtagtagtgatggatcaacatcaactttaacatcattaactaaagatagagttaaaatg 1715
Query: 1132 aaaggtagacaagcaccaagtaaaagtcataaagcaccaggttcaacttcaacttcaaat 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1716 aaaggtagacaagcaccaagtaaaagtcataaagcaccaggttcaacttcaacttcaaat 1775
Query: 1192 ggtggtggtgatgatgatgtgggtagtgatcaacaaccatcattattatcaaaagcatta 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 ggtggtggtgatgatgatgtgggtagtgatcaacaaccatcattattatcaaaagcatta 1835
Query: 1252 gaaagtaataaaaataatgaatcatctccaactactaaaaagaaaatt 1299
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 gaaagtaataaaaataatgaatcatctccaactactaaaaagaaaatt 1883
Score = 69.9 bits (35), Expect = 2e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataagctt 602
|||||||||||||||||||||||||||||||||||
Sbjct: 925 aagagaaacaagataaagaattggctgataagctt 959
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||||||||||||||||||||||||||
Sbjct: 1027 aagagaaacaagataaagaattggctgataa 1057
Score = 54.0 bits (27), Expect = 9e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||| ||||||||||||||||||||||
Sbjct: 1120 aagagaaaaaagataaagaattggctgataa 1150
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
||||||||||||||||||||||||||
Sbjct: 421 aagagaaagaattggctgataaactt 446
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
||||||||||||||||||||||||||
Sbjct: 358 aagagaaagaattggctgataaactt 383
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 636 ttggctgataaacttgcaaaagaa 659
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 1047 ttggctgataaacttgcaaaagaa 1070
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 432 ttggctgataaacttgcaaaagaa 455
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 997 aagagaaagaattggctgataaa 1019
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| |||||||| |||||||||||||||||
Sbjct: 616 aagaaaaacaagaaaaagaattggctgataa 646
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 1090 aagagaaagaattggctgataaa 1112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 508 aagagaaagaattggctgataaa 530
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 469 aagagaaagaattggctgataaa 491
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| |||||||| |||||||||||||||||
Sbjct: 538 aagaaaaacaagaaaaagaattggctgataa 568
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 226 aagaaaaagaattggctgataaactt 251
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 1036 aagataaagaattggctgataaactt 1061
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 625 aagaaaaagaattggctgataaactt 650
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 289 aagaaaaagaattggctgataaactt 314
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||||||||| |||||||||||||||
Sbjct: 178 aagagaaagagttggctgataaactt 203
Score = 42.1 bits (21), Expect = 0.004
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 570 gagaaacaagataaagaattggctgataa 598
|||||| |||| |||||||||||||||||
Sbjct: 462 gagaaagaagagaaagaattggctgataa 490
Score = 40.1 bits (20), Expect = 0.014
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
|||||||||||||||| |||||||
Sbjct: 369 ttggctgataaacttgaaaaagaa 392
Score = 40.1 bits (20), Expect = 0.014
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
|||||||||||||||| |||||||
Sbjct: 300 ttggctgataaacttgaaaaagaa 323
Score = 38.2 bits (19), Expect = 0.056
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| ||| |||| |||||||||||||||||
Sbjct: 130 aagaaaaagaagaaaaagaattggctgataa 160
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 576 caagataaagaattggctgataa 598
||||| |||||||||||||||||
Sbjct: 507 caagagaaagaattggctgataa 529
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 547 aagaaaaagaattggctgataaa 569
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 139 aagaaaaagaattggctgataaa 161
Score = 38.2 bits (19), Expect = 0.056
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| ||| |||| |||||||||||||||||
Sbjct: 280 aagataaagaagaaaaagaattggctgataa 310
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 576 caagataaagaattggctgataa 598
||||| |||||||||||||||||
Sbjct: 420 caagagaaagaattggctgataa 442
Score = 38.2 bits (19), Expect = 0.056
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||| ||| |||| |||||||||||||||||
Sbjct: 217 aagaaaaagaagaaaaagaattggctgataa 247
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 1129 aagataaagaattggctgataaa 1151
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 358 aagagaaagaattggctgataa 379
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 1090 aagagaaagaattggctgataa 1111
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 997 aagagaaagaattggctgataa 1018
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataa 22
|||| |||||||||||||||||
Sbjct: 934 aagataaagaattggctgataa 955
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaa 587
||||||||||||| ||||||
Sbjct: 697 aagagaaacaagaaaaagaa 716
Score = 32.2 bits (16), Expect = 3.4
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
|||||||||||| || ||||||||
Sbjct: 1140 ttggctgataaagttacaaaagaa 1163
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttg 90
||||||||||||||||
Sbjct: 189 ttggctgataaacttg 204
Score = 32.2 bits (16), Expect = 3.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttg 90
||||||||||||||||
Sbjct: 237 ttggctgataaacttg 252
Score = 32.2 bits (16), Expect = 3.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaa 587
||||||||||||| ||||||
Sbjct: 1366 aagagaaacaagaaaaagaa 1385
>Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Contig-U10739-1Q.Seq.d
Length = 1027
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||||||||||||||||||||||||||
Sbjct: 821 aagagaaacaagataaagaattggctgataa 851
Score = 54.0 bits (27), Expect = 9e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 568 aagagaaacaagataaagaattggctgataa 598
|||||||| ||||||||||||||||||||||
Sbjct: 914 aagagaaaaaagataaagaattggctgataa 944
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 ttggctgataaacttgcaaaagaa 98
||||||||||||||||||||||||
Sbjct: 841 ttggctgataaacttgcaaaagaa 864
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 884 aagagaaagaattggctgataaa 906
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||||||||||||||||||||||
Sbjct: 791 aagagaaagaattggctgataaa 813
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaactt 26
|||| |||||||||||||||||||||
Sbjct: 830 aagataaagaattggctgataaactt 855
Score = 38.2 bits (19), Expect = 0.056
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 aagagaaagaattggctgataaa 23
|||| ||||||||||||||||||
Sbjct: 923 aagataaagaattggctgataaa 945
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 884 aagagaaagaattggctgataa 905
Score = 36.2 bits (18), Expect = 0.22
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 577 aagataaagaattggctgataa 598
|||| |||||||||||||||||
Sbjct: 791 aagagaaagaattggctgataa 812
Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,855
Number of Sequences: 8402
Number of extensions: 41855
Number of successful extensions: 5676
Number of sequences better than 10.0: 285
length of query: 2165
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2148
effective length of database: 7,932,708
effective search space: 17039456784
effective search space used: 17039456784
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
|
| dna update |
2009. 4.12 |
| Homology vs DNA |
Query= Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Contig-U16576-1Q.Seq.d
(2165 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ336180) Dictyostelium discoideum cDNA clone:dda53d01, 5' ... 1294 0.0 1
(BJ332614) Dictyostelium discoideum cDNA clone:dda39a20, 5' ... 1225 0.0 1
(BJ389908) Dictyostelium discoideum cDNA clone:dds20d17, 5' ... 1189 0.0 1
(BJ367386) Dictyostelium discoideum cDNA clone:ddc42d16, 5' ... 605 0.0 2
(BJ420943) Dictyostelium discoideum cDNA clone:ddv40n22, 5' ... 767 0.0 2
(BJ365535) Dictyostelium discoideum cDNA clone:ddc35o14, 5' ... 775 0.0 2
(BJ337069) Dictyostelium discoideum cDNA clone:dda56k03, 5' ... 829 0.0 2
(BJ332285) Dictyostelium discoideum cDNA clone:dda38h14, 5' ... 775 0.0 2
(BJ330309) Dictyostelium discoideum cDNA clone:dda31h01, 5' ... 775 0.0 2
(BJ331263) Dictyostelium discoideum cDNA clone:dda34h17, 5' ... 825 0.0 3
(BJ338481) Dictyostelium discoideum cDNA clone:dda61n16, 5' ... 775 0.0 2
(BJ359064) Dictyostelium discoideum cDNA clone:ddc12l14, 5' ... 775 0.0 2
(BJ338798) Dictyostelium discoideum cDNA clone:dda63h03, 5' ... 775 0.0 2
(AU052967) Dictyostelium discoideum slug cDNA, clone SLF402. 775 0.0 1
(AU054045) Dictyostelium discoideum slug cDNA, clone SLK491. 769 0.0 1
(BJ348721) Dictyostelium discoideum cDNA clone:dda34k01, 3' ... 739 0.0 1
(BJ399352) Dictyostelium discoideum cDNA clone:dds5h13, 3' e... 587 e-163 1
(BJ404305) Dictyostelium discoideum cDNA clone:dds28j01, 3' ... 496 e-135 1
(AU053018) Dictyostelium discoideum slug cDNA, clone SLF523. 260 e-116 2
(BJ394070) Dictyostelium discoideum cDNA clone:dds33n13, 5' ... 410 e-115 2
(BJ354980) Dictyostelium discoideum cDNA clone:dda55i09, 3' ... 252 5e-62 1
(BJ378390) Dictyostelium discoideum cDNA clone:ddc31d23, 3' ... 210 3e-55 2
(BJ409315) Dictyostelium discoideum cDNA clone:dds40e20, 3' ... 186 2e-42 1
(BJ409634) Dictyostelium discoideum cDNA clone:dds42c19, 3' ... 168 6e-37 1
(BJ409611) Dictyostelium discoideum cDNA clone:dds42n13, 3' ... 151 1e-31 1
(BJ357164) Dictyostelium discoideum cDNA clone:dda62l18, 3' ... 119 1e-25 2
(BJ399394) Dictyostelium discoideum cDNA clone:dds5b19, 3' e... 86 9e-21 3
(FC521164) CBFU4423.rev CBFU Thalassiosira pseudonana Iron l... 58 0.001 1
(FI145088) MUGQ_CH252P139A18Sp6_CH0251_079 CHORI-252 Vervet ... 46 0.004 2
(CV100786) FAMU_USDA_FP_8809 Vitis shuttleworthii L., grape ... 54 0.023 1
(CV093932) FAMU_USDA_FP_1955 Vitis shuttleworthii L., grape ... 54 0.023 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.026 14
(AC202659) Spermophilus tridecemlineatus clone VMRC20-239H7,... 38 0.058 2
(AC180855) Strongylocentrotus purpuratus clone R3-3069C1, WO... 36 0.058 2
(AU061918) Dictyostelium discoideum slug cDNA, clone SLG607. 52 0.092 1
(AU053536) Dictyostelium discoideum slug cDNA, clone SLI863. 52 0.092 1
(AU053226) Dictyostelium discoideum slug cDNA, clone SLI177. 52 0.092 1
(AU039273) Dictyostelium discoideum slug cDNA, clone SLH324. 52 0.092 1
(BJ395949) Dictyostelium discoideum cDNA clone:dds40d23, 5' ... 52 0.092 1
(BJ387877) Dictyostelium discoideum cDNA clone:dds5h13, 5' e... 52 0.092 1
(BJ375707) Dictyostelium discoideum cDNA clone:ddc19n13, 3' ... 52 0.092 1
(BJ369883) Dictyostelium discoideum cDNA clone:ddc52j12, 5' ... 52 0.092 1
(BJ347398) Dictyostelium discoideum cDNA clone:dda27a06, 3' ... 52 0.092 1
(BJ347269) Dictyostelium discoideum cDNA clone:dda26i15, 3' ... 52 0.092 1
(BZ164233) CH230-246O13.TJB CHORI-230 Segment 2 Rattus norve... 44 0.21 3
(AF312225) Homo sapiens chromosome 2 map 2q37.1, complete se... 50 0.36 1
(AC019130) Homo sapiens BAC clone RP11-563E16 from 2, comple... 50 0.36 1
(BD159432) Primer for synthesizing full-length cDNA and use ... 46 0.42 2
(AX881985) Sequence 16890 from Patent EP1074617. 46 0.42 2
(AK022231) Homo sapiens cDNA FLJ12169 fis, clone MAMMA1000643. 46 0.42 2
(AC181327) Strongylocentrotus purpuratus clone R3-4018A10, W... 42 0.50 6
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.63 11
(AC110651) Rattus norvegicus clone CH230-81I7, WORKING DRAFT... 42 1.0 4
(AC215389) Solanum lycopersicum chromosome 2 clone C02HBa012... 44 1.0 4
(AL954822) Zebrafish DNA sequence from clone CH211-222M15 in... 48 1.4 1
(AL845285) Mouse DNA sequence from clone RP23-167M2 on chrom... 48 1.4 1
(AC198905) Pan troglodytes BAC clone CH251-428E24 from chrom... 48 1.4 1
(DJ080768) Neisseria Genomic Research. 48 1.4 1
(DD002107) Neisseria Genomic Sequences And Methods Of Their ... 48 1.4 1
(DD001103) Neisseria Genomic Sequences And Methods Of Their ... 48 1.4 1
(CS238429) Sequence 111 from Patent EP1605061. 48 1.4 1
(AX044030) Sequence 109 from Patent WO0066791. 48 1.4 1
(EU210637) Armigeres subalbatus ASAP ID ACN-0182338 transcri... 48 1.4 1
(AL596275) Human DNA sequence from clone RP11-183G22 on chro... 48 1.4 1
(AC134141) Rattus norvegicus clone CH230-374G4, WORKING DRAF... 48 1.4 1
(AC130865) Rattus norvegicus clone CH230-209F5, WORKING DRAF... 48 1.4 1
(AC114218) Rattus norvegicus clone CH230-318G24, WORKING DRA... 48 1.4 1
(AC112019) Rattus norvegicus clone CH230-16I4, *** SEQUENCIN... 48 1.4 1
(AC097561) Rattus norvegicus clone CH230-161A18, WORKING DRA... 48 1.4 1
(AC097543) Rattus norvegicus clone CH230-126I1, WORKING DRAF... 48 1.4 1
(BB979072) Plasmodium berghei str. ANKA cDNA clone: OK009136... 48 1.4 1
(FK918695) EST_lsal_evj_941877 lsalevj mixed_tissue_mixed_st... 48 1.4 1
(CP000381) Neisseria meningitidis 053442, complete genome. 48 1.4 1
(AL157959) Neisseria meningitidis serogroup A strain Z2491 c... 48 1.4 1
(AE002098) Neisseria meningitidis MC58, complete genome. 48 1.4 1
(AC199667) Nomascus leucogenys leucogenys clone CH271-70M18,... 44 1.6 3
(BF566802) UI-R-BJ0p-afm-d-10-0-UI.r1 UI-R-BJ0p Rattus norve... 42 1.6 2
(CO546984) LyEST3355 Sea lamprey LyEST Petromyzon marinus cD... 42 1.8 2
(CT975338) Equus caballus GSS, BAC clone CH241-57G12, SP6 en... 42 2.3 2
(FM129301) Rattus norvegicus EST, 5'-end sequence, clone etn... 42 2.3 2
(EY375028) CAXA15409.rev CAXA Helobdella robusta Subtracted ... 42 2.3 2
(AY865620) Homo sapiens signal transducer and activator of t... 46 2.3 4
(GC698976) Sequence 14221 from patent US 6812339. 46 2.3 4
(BZ215927) CH230-250M23.TV CHORI-230 Segment 2 Rattus norveg... 42 2.3 2
(EY323661) CAWX9128.rev CAWX Helobdella robusta Primary Earl... 42 2.4 2
(EY339497) CAWY9714.rev CAWY Helobdella robusta Subtracted E... 42 2.5 2
(EY375029) CAXA15409.fwd CAXA Helobdella robusta Subtracted ... 42 2.6 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 2.7 12
(DE894236) Macropus eugenii DNA, BAC clone: MEB1-072A13_F, 5... 42 2.7 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 2.7 16
(AL663105) Human DNA sequence from clone RP4-743D20 on chrom... 32 2.8 2
(EY293757) CAWX11304.fwd CAWX Helobdella robusta Primary Ear... 42 2.9 2
(AL357112) Human DNA sequence *** SEQUENCING CANCELLED *** f... 32 2.9 2
(AL078584) Human DNA sequence from clone RP1-245M18 on chrom... 36 2.9 2
(CL100618) ISB1-36A1_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 42 3.0 2
(CL099951) ISB1-33H24_Sp6.1 ISB1 Xenopus (Silurana) tropical... 42 3.0 2
(CL099711) ISB1-33B22_Sp6.1 ISB1 Xenopus (Silurana) tropical... 42 3.2 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 3.3 10
(CW941880) TcB23.1_H11_SP6 Tribolium BAC library Tribolium c... 40 3.4 3
(AL181289) Tetraodon nigroviridis genome survey sequence T7 ... 40 3.6 2
(CG734269) RP11-210E16, SP6 RPCI-11 Human Male BAC Library H... 32 3.8 2
(DH676955) Rattus norvegicus DNA, BAC clone: RNB1-228M22, 3'... 40 4.1 2
(DH772441) Rattus norvegicus DNA, BAC clone: RNB1-357N11, 5'... 40 4.7 2
(CN223357) WLA048G11.ab1 WLbrain Gallus gallus cDNA 5', mRNA... 42 4.7 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 4.8 13
(DW989806) EST42187 Larval Stage 1 Aedes aegypti cDNA clone ... 34 4.8 3
(AL166032) Tetraodon nigroviridis genome survey sequence T7 ... 38 5.0 3
(AZ000660) RPCI-23-313D18.TJ RPCI-23 Mus musculus genomic cl... 36 5.0 2
(AB286671) Lethenteron japonicum LjHox1w gene for LjHox1w ho... 46 5.7 1
(U70205) La Crosse virus polyprotein gene, complete cds. 46 5.7 1
(U18980) La Crosse virus isolate LAC22988-89 M segment polyp... 46 5.7 1
(U18979) La Crosse virus isolate LAC30928-31 M segment polyp... 46 5.7 1
(M87664) Bunyavirus La Crosse G2/Nsm/G1 gene, open reading f... 46 5.7 1
(EF485037) La Crosse virus strain LACV/mosquito/1978 segment... 46 5.7 1
(EF485034) La Crosse virus strain LACV/human/1978 segment me... 46 5.7 1
(EF485031) La Crosse virus strain LACV/human/1960 segment me... 46 5.7 1
(DQ196119) La Crosse virus strain 77 segment middle, complet... 46 5.7 1
(AF528166) La Crosse virus strain Human/78 segment M, comple... 46 5.7 1
(AL772186) Mouse DNA sequence from clone RP23-281K3 on chrom... 46 5.7 1
(AL592080) Mouse DNA sequence from clone RP23-102H10 on chro... 46 5.7 1
(AC159335) Mus musculus 10 BAC RP24-447O4 (Roswell Park Canc... 46 5.7 1
(AC159135) Mus musculus 10 BAC RP23-184H24 (Roswell Park Can... 46 5.7 1
(AC125183) Mus musculus BAC clone RP23-297M4 from 5, complet... 46 5.7 1
(AC115937) Mus musculus chromosome 5, clone RP24-547J21, com... 46 5.7 1
(AC198680) Rhesus Macaque BAC CH250-125J6 () complete seque... 46 5.7 1
(AC183599) Pan troglodytes BAC clone CH251-508H15 from chrom... 46 5.7 1
(AM435121) Vitis vinifera contig VV78X220276.9, whole genome... 46 5.7 1
(AM269955) Aspergillus niger contig An01c0080, complete genome. 46 5.7 1
(AC187854) Populus trichocarpa clone Pop1-11B14, complete se... 46 5.7 1
(DL005656) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 46 5.7 1
(CS459581) Sequence 62 from Patent WO2006117596. 46 5.7 1
(GN008013) Sequence 454 from Patent EP2014669. 46 5.7 1
(GC773048) Sequence 88293 from patent US 6812339. 46 5.7 1
(AF040661) Caenorhabditis elegans cosmid W10G11, complete se... 46 5.7 1
(DQ160197) Homo sapiens RAD51-like 1 (S. cerevisiae) (RAD51L... 46 5.7 1
(AP003555) Homo sapiens genomic DNA, chromosome 11q, clone:R... 46 5.7 1
(AL354796) Human DNA sequence from clone RP11-145E17 on chro... 46 5.7 1
(AL157915) Human chromosome 14 DNA sequence BAC R-68M10 of l... 46 5.7 1
(AC124864) Homo sapiens BAC clone RP11-570J4 from 4, complet... 46 5.7 1
(AC116622) Homo sapiens BAC clone RP11-312L16 from 4, comple... 46 5.7 1
(AC106858) Homo sapiens chromosome 17, clone RP11-347L15, co... 46 5.7 1
(AC067945) Homo sapiens BAC clone RP11-629B4 from 2, complet... 46 5.7 1
(AC141505) Rattus norvegicus clone CH230-51E13, WORKING DRAF... 46 5.7 1
(AC135039) Rattus norvegicus clone CH230-178I12, WORKING DRA... 46 5.7 1
(AC131201) Rattus norvegicus clone CH230-367K5, WORKING DRAF... 46 5.7 1
(AC130068) Rattus norvegicus clone CH230-313L4, *** SEQUENCI... 46 5.7 1
(AC127160) Rattus norvegicus clone CH230-460D14, *** SEQUENC... 46 5.7 1
(AC123343) Rattus norvegicus clone CH230-124O22, WORKING DRA... 46 5.7 1
(AC111852) Rattus norvegicus clone CH230-12H7, *** SEQUENCIN... 46 5.7 1
(FP017207) Medicago truncatula chromosome 5 clone mth4-14b12... 46 5.7 1
(CU606997) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.7 1
(AC087248) Mus musculus clone RP23-83G18, *** SEQUENCING IN ... 46 5.7 1
(AC087097) Mus musculus chromosome 11 clone RP23-93F18, WORK... 46 5.7 1
(CU463988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.7 1
(AC219851) Bos taurus clone CH240-320A16, WORKING DRAFT SEQU... 46 5.7 1
(AC201675) Strongylocentrotus purpuratus clone R3-1106J8, WO... 46 5.7 1
(AC201550) Strongylocentrotus purpuratus clone R3-3114D15, W... 46 5.7 1
(AC184230) Strongylocentrotus purpuratus clone R3-3056L22, W... 46 5.7 1
(AC181729) Strongylocentrotus purpuratus clone R3-1038B04, W... 46 5.7 1
(AC181547) Strongylocentrotus purpuratus clone R3-1109O21, W... 46 5.7 1
(AC180869) Strongylocentrotus purpuratus clone R3-3067G10, W... 46 5.7 1
(AC179119) Strongylocentrotus purpuratus clone R3-4011I22, W... 46 5.7 1
(AC178532) Strongylocentrotus purpuratus clone R3-3028K18, W... 46 5.7 1
(AC178092) Strongylocentrotus purpuratus clone R3-3067G15, W... 46 5.7 1
(AC177279) Strongylocentrotus purpuratus clone R3-1033M10, W... 46 5.7 1
(AC177268) Strongylocentrotus purpuratus clone R3-1033P1, WO... 46 5.7 1
(AC168515) Strongylocentrotus purpuratus clone R3-3108I21, W... 46 5.7 1
(AC023493) Homo sapiens chromosome 17 clone RP11-313F15, WOR... 46 5.7 1
(AC016198) Homo sapiens clone RP11-24K5, WORKING DRAFT SEQUE... 46 5.7 1
(AC006789) Caenorhabditis elegans clone Y49F6, *** SEQUENCIN... 46 5.7 1
(BH077364) RPCI-24-398K7.TJ RPCI-24 Mus musculus genomic clo... 46 5.7 1
(AZ635293) 1M0491K05R Mouse 10kb plasmid UUGC1M library Mus ... 46 5.7 1
(ET899690) CHO_OF141xn19f1.ab1 CHO_OF Nicotiana tabacum geno... 46 5.7 1
(EJ317518) 1095403309670 Global-Ocean-Sampling_GS-27-01-01-1... 46 5.7 1
(EI062833) hhc0011aa02.b1 hhc Oryza granulata genomic clone ... 46 5.7 1
(EF749584) Mus musculus C57BL/6N IST10487C8BBF1 gene trap em... 46 5.7 1
(DU962565) 233394 Tomato MboI BAC Library Solanum lycopersic... 46 5.7 1
(CW929790) EDCBY84TR A. castellanii, 6-8 kb library from tot... 46 5.7 1
(CT176377) Sus scrofa genomic clone CH242-81L23, genomic sur... 46 5.7 1
(CE313980) tigr-gss-dog-17000360956396 Dog Library Canis lup... 46 5.7 1
(ES399554) MUT06-K17.y1d-s SHGC-MUT Mytilus californianus cD... 46 5.7 1
(DV865787) CRP5519 Creeping bentgrass EST Agrostis stolonife... 46 5.7 1
(DV860530) CRP262 Creeping bentgrass EST Agrostis stolonifer... 46 5.7 1
(DC223789) Plasmodium berghei strain ANKA cDNA clone:MZ00799... 46 5.7 1
(AU061684) Dictyostelium discoideum slug cDNA, clone SLF403. 46 5.7 1
(DA362186) Homo sapiens cDNA clone BRSTN2008738, 5' end, mRN... 46 5.7 1
(CN360153) 17000600020569 GRN_PRENEU Homo sapiens cDNA 5', m... 46 5.7 1
(C83992) Dictyostelium discoideum slug cDNA, clone SLK675. 46 5.7 1
(C25548) Dictyostelium discoideum slug cDNA, clone SLA251. 46 5.7 1
(BQ372861) CM4-FT0104-230600-215-e12 FT0104 Homo sapiens cDN... 46 5.7 1
(BJ401399) Dictyostelium discoideum cDNA clone:dds23j03, 3' ... 46 5.7 1
(BJ396076) Dictyostelium discoideum cDNA clone:dds41d11, 5' ... 46 5.7 1
(BJ387907) Dictyostelium discoideum cDNA clone:dds5b19, 5' e... 46 5.7 1
(BJ385408) Dictyostelium discoideum cDNA clone:ddc54i19, 3' ... 46 5.7 1
(BJ339061) Dictyostelium discoideum cDNA clone:dda64b02, 5' ... 46 5.7 1
(BJ335359) Dictyostelium discoideum cDNA clone:dda49k24, 5' ... 46 5.7 1
(BF295885) 029PbE11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 46 5.7 1
(BF294538) 006PbB09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 46 5.7 1
(BE392994) 601309007F1 NIH_MGC_44 Homo sapiens cDNA clone IM... 46 5.7 1
(BB909527) Trifolium pratense cDNA clone:RCE08355. 46 5.7 1
(GO196559) CAGB16252.rev CAGB Alvinella pompejana Normalized... 46 5.7 1
(GO180560) CAGA6735.fwd CAGA Alvinella pompejana Normalized ... 46 5.7 1
(GO178630) CAGA5822.fwd CAGA Alvinella pompejana Normalized ... 46 5.7 1
(GO176721) CAGA4935.fwd CAGA Alvinella pompejana Normalized ... 46 5.7 1
(GO144566) CAGA30892.fwd CAGA Alvinella pompejana Normalized... 46 5.7 1
(FK696037) CCBW2971.g1 CCBW Cochliobolus heterostrophus, Che... 46 5.7 1
(FE244574) CAPG8273.fwd CAPG Naegleria gruberi amoeba stage ... 46 5.7 1
(FD436636) Atr02b_38_D01_C011.g1 FGP Female Amborella tricho... 46 5.7 1
(AA000528) me75e10.r1 Soares mouse embryo NbME13.5 14.5 Mus ... 40 5.8 2
(EE668491) SAAH-aac06d03.g1 Agen 0058 Schmidtea mediterranea... 36 6.0 2
(FK919361) EST_lsal_evj_959119 lsalevj mixed_tissue_mixed_st... 44 6.1 2
(FK919360) EST_lsal_evj_946063 lsalevj mixed_tissue_mixed_st... 44 6.1 2
(AC198142) Pongo abelii BAC clone CH276-149J5 from chromosom... 44 6.4 4
(BX511319) RZPD Mus musculus cDNA clone IMAGp998K19935 = IMA... 40 6.6 2
(AL356742) Human DNA sequence from clone RP11-216C10 on chro... 36 6.6 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 6.6 14
(AZ145694) SP_0025_A1_B10_T7 Strongylocentrotus purpuratus, ... 40 6.8 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 7.1 14
(CQ342489) Sequence 16583 from Patent WO0157275. 42 7.1 2
(CQ305288) Sequence 16393 from Patent WO0186003. 42 7.1 2
(CQ268254) Sequence 16515 from Patent WO0157277. 42 7.1 2
(CQ230106) Sequence 16945 from Patent WO0157273. 42 7.1 2
(CQ206688) Sequence 8965 from Patent WO0157271. 42 7.1 2
(CQ182292) Sequence 13688 from Patent WO0157274. 42 7.1 2
(CQ146881) Sequence 16903 from Patent WO0157276. 42 7.1 2
(CQ108252) Sequence 17111 from Patent WO0157272. 42 7.1 2
(CQ077251) Sequence 13051 from Patent WO0157278. 42 7.1 2
(CQ057943) Sequence 8763 from Patent WO0157270. 42 7.1 2
(AC132361) Mus musculus BAC clone RP24-149E13 from chromosom... 40 7.3 5
(BJ339169) Dictyostelium discoideum cDNA clone:dda64l07, 5' ... 40 7.4 2
(GE599928) CCPW8297.b2_A12.ab1 CCP(UWX) Globe Artichoke Cyna... 40 7.5 2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 7.5 12
(AZ257675) RPCI-23-439L8.TV RPCI-23 Mus musculus genomic clo... 42 7.5 2
(GE593620) CCPW2284.b1_H20.ab1 CCP(UWX) Globe Artichoke Cyna... 40 7.8 2
(AI425738) me75e10.y1 Soares mouse embryo NbME13.5 14.5 Mus ... 40 7.8 2
(DH729854) Rattus norvegicus DNA, BAC clone: RNB1-300D24, 5'... 40 8.0 2
(AZ851742) 2M0154E07F Mouse 10kb plasmid UUGC1M library Mus ... 40 8.0 2
(DH521845) Rattus norvegicus DNA, BAC clone: RNB1-019I20, 5'... 40 8.1 2
(EJ503474) 1095403665657 Global-Ocean-Sampling_GS-28-01-01-1... 40 8.3 3
(AZ378012) 1M0132P03R Mouse 10kb plasmid UUGC1M library Mus ... 42 8.3 2
(AY254473) Dictyostelium discoideum nucleotide exchange fact... 40 8.4 3
(AC013442) Homo sapiens BAC clone RP11-387M19 from 2, comple... 36 8.4 5
(DH633832) Rattus norvegicus DNA, BAC clone: RNB1-170P01, 3'... 40 8.5 2
(EJ360728) 1092963685799 Global-Ocean-Sampling_GS-28-01-01-1... 38 8.6 2
(DH621498) Rattus norvegicus DNA, BAC clone: RNB1-154H08, 5'... 40 8.8 2
(EF424219) Homo sapiens cell-line somatic cell hybrid F1H4 c... 40 8.9 2
(FK683739) CCBP4201.b1 CCBP Cochliobolus heterostrophus, Che... 42 9.0 2
(BZ251835) CH230-401H22.TJ CHORI-230 Segment 2 Rattus norveg... 40 9.0 2
(AM530274) Paracentrotus lividus EST, clone MPMGp1171H2364Q,... 40 9.1 2
(EY347794) CAWZ16151.rev CAWZ Helobdella robusta Primary Lat... 40 9.2 2
(ET215895) MUGQ_CH252P419O11T7_CP802_034 CHORI-252 Vervet Mo... 38 9.2 2
(BV771206) pRRL2:Newb:20080411:145514 USMARC Pig Breed SNP D... 42 9.3 2
(AL188841) Tetraodon nigroviridis genome survey sequence PUC... 40 9.4 2
(AC103465) Rattus norvegicus clone CH230-44D23, *** SEQUENCI... 32 9.6 2
(CT522755) A BAC library has been constructed from cultivar ... 36 9.6 2
(BH356455) CH230-163J19.TV CHORI-230 Segment 1 Rattus norveg... 42 9.8 2
>(BJ336180) Dictyostelium discoideum cDNA clone:dda53d01, 5' end,
single read.
Length = 657
Score = 1294 bits (653), Expect = 0.0
Identities = 656/657 (99%)
Strand = Plus / Plus
Query: 1383 tgaaaataataaacttttatcaaatgttttaaaggatgaacctgcagcaccaaatttcgt 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaaaataataaacttttatcaaatgttttaaaggatgaacctgcagcaccaaatttcgt 60
Query: 1443 tagaggtagatcacaatctgtatcagtcacatcaacattgaaacaagatccaaataaatt 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagaggtagatcacaatctgtatcagtcacatcaacattgaaacaagatccaaataaatt 120
Query: 1503 tttaaatcataaaaagagtattgatacttattcaggcctaagagcaagattagttcattg 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaaatcataaaaagagtattgatacttattcaggcctaagagcaagattagttcattg 180
Query: 1563 taaaggtaaaaagagaattttaaccaaagaggttgaaatctcaataaattcattgaataa 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaaggtaaaaagagaattttaaccaaagaggttgaaatctcaataaattcattgaataa 240
Query: 1623 aatggatgcattcgttttagattgtggtattgaaaattcaaatgttggtggtgaatcagt 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatggatgcattcgttttagattgtggtattgaaaattcaaatgttggtggtgaatcagt 300
Query: 1683 tgatagtaattcacattctaccattttcacttggtatggctcaaaatcaactgccaataa 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgatagtaattcacattctaccattttcacttggtatggctcaaaatcaactgccaataa 360
Query: 1743 gaaagccaaagcagttgcaattgcagaaatcattaaatctcacgaaagaggtggtcatgc 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaagccaaagcagttgcaattgcagaaatcattaaatctcacgaaagaggtggtcatgc 420
Query: 1803 tacaataattaaattggatgaaggtgatgaaaatgaattattttataaacgtattggtgg 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacaataattaaattggatgaaggtgatgaaaatgaattattttataaacgtattggtgg 480
Query: 1863 aggttcatcacataaatctactattaatccagatggtggtgatgatttagaagcggaatt 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggttcatcacataaatctactattaatccagatggtggtgatgatttagaagcggaatt 540
Query: 1923 aaattgggcatcatcattcacactattgaagtatttaactgataaagatcaattaattca 1982
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 541 aaattgggcatcatcattcacactattgaagtgtttaactgataaagatcaattaattca 600
Query: 1983 tattgatactaaatcattatcaatggaattattagagtctgatggtttctatgtatt 2039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tattgatactaaatcattatcaatggaattattagagtctgatggtttctatgtatt 657
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,694,935,052
Number of extensions: 110377870
Number of successful extensions: 9551050
Number of sequences better than 10.0: 261
Length of query: 2165
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 2141
Effective length of database: 99,340,224,878
Effective search space: 212687421463798
Effective search space used: 212687421463798
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.28 |
| Homology vs Protein |
Query= Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Contig-U16576-1Q.Seq.d
(2165 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q27319) RecName: Full=Gelsolin, cytoplasmic; AltName: Full=Acti... 71 1e-10
S41391(S41391)gelsolin - American lobster 71 1e-10
AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod... 67 4e-09
(Q8WQ85) RecName: Full=Villidin; 67 4e-09
BC074148_1(BC074148|pid:none) Xenopus laevis similar to villin, ... 65 8e-09
BC044966_1(BC044966|pid:none) Xenopus laevis similar to villin, ... 65 8e-09
BC045214_1(BC045214|pid:none) Xenopus laevis similar to villin 1... 64 2e-08
BC111730_1(BC111730|pid:none) Homo sapiens advillin, mRNA (cDNA ... 64 2e-08
(O75366) RecName: Full=Advillin; AltName: Full=p92; &AK314362_1... 64 2e-08
AF041449_1(AF041449|pid:none) Homo sapiens advillin mRNA, comple... 64 2e-08
AL928875_3(AL928875|pid:none) Zebrafish DNA sequence from clone ... 64 2e-08
BC054960_1(BC054960|pid:none) Xenopus laevis villin 1, mRNA (cDN... 63 4e-08
BC074679_1(BC074679|pid:none) Xenopus tropicalis villin 1, mRNA ... 63 5e-08
(P36418) RecName: Full=Protovillin; AltName: Full=100 kDa actin-... 62 9e-08
AE014297_18(AE014297|pid:none) Drosophila melanogaster chromosom... 61 2e-07
(Q07171) RecName: Full=Gelsolin; Flags: Precursor; &AE014297_15... 61 2e-07
BC135895_1(BC135895|pid:none) Xenopus tropicalis hypothetical pr... 61 2e-07
BC084059_1(BC084059|pid:none) Xenopus laevis gelsolin, mRNA (cDN... 61 2e-07
AE014297_14(AE014297|pid:none) Drosophila melanogaster chromosom... 61 2e-07
A53909(A53909;S32531) gelsolin, secreted form precursor - fruit ... 61 2e-07
BC021808_1(BC021808|pid:none) Mus musculus villin-like, mRNA (cD... 61 2e-07
(Q91YD6) RecName: Full=Villin-like protein; AltName: Full=EF-6; ... 59 6e-07
BC049461_1(BC049461|pid:none) Danio rerio capping protein (actin... 59 7e-07
AK171324_1(AK171324|pid:none) Mus musculus B6-derived CD11 +ve d... 58 1e-06
AK170878_1(AK170878|pid:none) Mus musculus NOD-derived CD11c +ve... 58 1e-06
AK154851_1(AK154851|pid:none) Mus musculus NOD-derived CD11c +ve... 58 1e-06
(Q865V6) RecName: Full=Macrophage-capping protein; AltName: Full... 57 3e-06
AX960828_1(AX960828|pid:none) Sequence 6 from Patent EP1371728. 57 4e-06
BC021090_1(BC021090|pid:none) Homo sapiens scinderin, mRNA (cDNA... 57 4e-06
AC005281_1(AC005281|pid:none) Homo sapiens PAC clone RP4-722F20 ... 57 4e-06
AK313709_1(AK313709|pid:none) Homo sapiens cDNA, FLJ94302, highl... 57 4e-06
(Q9Y6U3) RecName: Full=Adseverin; AltName: Full=Scinderin; &AK2... 57 4e-06
(Q3SZP7) RecName: Full=Villin-1; &BC102759_1(BC102759|pid:none) 56 5e-06
BT020776_1(BT020776|pid:none) Bos taurus villin 1 (VIL1), mRNA, ... 56 5e-06
BC071365_1(BC071365|pid:none) Danio rerio capping protein (actin... 56 5e-06
(O15195) RecName: Full=Villin-like protein; 55 8e-06
(Q60604) RecName: Full=Adseverin; AltName: Full=Scinderin; AltNa... 55 8e-06
BC017303_1(BC017303|pid:none) Homo sapiens villin 1, mRNA (cDNA ... 55 8e-06
(P09327) RecName: Full=Villin-1; 55 8e-06
A07400_1(A07400|pid:none) H.sapiens DNA for villin. &A31642(A31... 55 8e-06
I45832(I45832) scinderin - bovine &X78479_1(X78479|pid:none) 55 8e-06
AK136080_1(AK136080|pid:none) Mus musculus in vitro fertilized e... 55 8e-06
AK173295_1(AK173295|pid:none) Mus musculus mRNA for mKIAA1905 pr... 55 8e-06
AP008210_1797(AP008210|pid:none) Oryza sativa (japonica cultivar... 55 8e-06
Y13971_1(Y13971|pid:none) Mus musculus mRNA for adseverin(D5). 55 8e-06
AK133484_1(AK133484|pid:none) Mus musculus 11 days pregnant adul... 55 8e-06
CR855138_6(CR855138|pid:none) Oryza sativa genomic DNA, chromoso... 55 8e-06
BC094991_1(BC094991|pid:none) Danio rerio scinderin like a, mRNA... 55 1e-05
(Q28046) RecName: Full=Adseverin; AltName: Full=Scinderin; ... 54 2e-05
BC015267_1(BC015267|pid:none) Mus musculus villin 1, mRNA (cDNA ... 54 2e-05
BC134994_1(BC134994|pid:none) Danio rerio gelsolin a, mRNA (cDNA... 54 2e-05
BC155581_1(BC155581|pid:none) Danio rerio scinderin like a, mRNA... 54 3e-05
AK313898_1(AK313898|pid:none) Homo sapiens cDNA, FLJ94534, highl... 54 3e-05
BC125898_1(BC125898|pid:none) Danio rerio scinderin like a, mRNA... 54 3e-05
AF175294_1(AF175294|pid:none) Danio rerio gelsolin mRNA, complet... 54 3e-05
U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 53 4e-05
BC115120_1(BC115120|pid:none) Danio rerio gelsolin a, mRNA (cDNA... 53 4e-05
BC168981_1(BC168981|pid:none) Rattus norvegicus villin 1, mRNA (... 53 5e-05
AK152818_1(AK152818|pid:none) Mus musculus bone marrow macrophag... 53 5e-05
AK165153_1(AK165153|pid:none) Mus musculus 10 days neonate olfac... 53 5e-05
AF099929_1(AF099929|pid:none) Rattus norvegicus pervin mRNA, com... 53 5e-05
AY324394_1(AY324394|pid:none) Rattus norvegicus scinderin (Scind... 53 5e-05
S15011(S15011)mbh1 protein - mouse 52 7e-05
X54511_1(X54511|pid:none) M.musculus mbh1 gene for Myc basic mot... 52 9e-05
AJ719674_1(AJ719674|pid:none) Gallus gallus mRNA for hypothetica... 52 1e-04
AB019233_13(AB019233|pid:none) Arabidopsis thaliana genomic DNA,... 52 1e-04
T23355(T23355) hypothetical protein K06A4.3 - Caenorhabditis ele... 51 2e-04
BC066531_1(BC066531|pid:none) Danio rerio scinderin like b, mRNA... 51 2e-04
AK146622_1(AK146622|pid:none) Mus musculus 17 days pregnant adul... 50 3e-04
(P24452) RecName: Full=Macrophage-capping protein; AltName: Full... 50 3e-04
CP001334_86(CP001334|pid:none) Micromonas sp. RCC299 chromosome ... 50 4e-04
BX572629_4(BX572629|pid:none) Zebrafish DNA sequence from clone ... 50 4e-04
BX005064_2(BX005064|pid:none) Zebrafish DNA sequence from clone ... 50 4e-04
BX927121_2(BX927121|pid:none) Zebrafish DNA sequence from clone ... 49 0.001
AK318641_1(AK318641|pid:none) Arabidopsis thaliana AT2G29890 mRN... 47 0.003
H84701(H84701)probable villin [imported] - Arabidopsis thaliana 47 0.003
BC090138_1(BC090138|pid:none) Xenopus tropicalis flightless 1 ho... 47 0.003
(O81643) RecName: Full=Villin-1; &AC007113_2(AC007113|pid:none) 47 0.003
BT055016_1(BT055016|pid:none) Zea mays full-length cDNA clone ZM... 46 0.006
BC074175_1(BC074175|pid:none) Xenopus laevis MGC81993 protein, m... 45 0.008
BC074479_1(BC074479|pid:none) Xenopus laevis MGC84783 protein, m... 45 0.014
EF215146_1(EF215146|pid:none) Callithrix jacchus clone J23-44.2_... 45 0.014
CR861279_1(CR861279|pid:none) Pongo abelii mRNA; cDNA DKFZp459O0... 44 0.019
EU677720_1(EU677720|pid:none) Caenorhabditis brenneri gelsolin m... 44 0.019
AM474513_1(AM474513|pid:none) Vitis vinifera contig VV78X109071.... 44 0.024
AF287264_1(AF287264|pid:none) Mus musculus cytoskeletal actin-mo... 44 0.032
(Q9JJ28) RecName: Full=Protein flightless-1 homolog; &AF142329_... 44 0.032
BC032282_1(BC032282|pid:none) Mus musculus flightless I homolog ... 44 0.032
(O65570) RecName: Full=Villin-4; &AK117296_1(AK117296|pid:none)... 43 0.042
AL078464_19(AL078464|pid:none) Arabidopsis thaliana DNA chromoso... 43 0.042
BC085829_1(BC085829|pid:none) Rattus norvegicus flightless I hom... 43 0.042
E84845(E84845)probable villin 2 [imported] - Arabidopsis thaliana 42 0.071
AF081202_1(AF081202|pid:none) Arabidopsis thaliana villin 2 (VLN... 42 0.071
AF317423_1(AF317423|pid:none) Mus musculus archvillin (Svil) mRN... 42 0.071
(Q8K4L3) RecName: Full=Supervillin; AltName: Full=Archvillin; Al... 42 0.071
(Q3SX14) RecName: Full=Gelsolin; AltName: Full=Actin-depolymeriz... 42 0.12
AK151684_1(AK151684|pid:none) Mus musculus bone marrow macrophag... 42 0.12
AK299453_1(AK299453|pid:none) Homo sapiens cDNA FLJ55934 complet... 41 0.16
BC135025_1(BC135025|pid:none) Danio rerio gelsolin b, mRNA (cDNA... 41 0.16
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 41 0.16
AL773523_9(AL773523|pid:none) Mouse DNA sequence from clone RP23... 41 0.21
AJ577853_1(AJ577853|pid:none) Nicotiana tabacum partial mRNA for... 40 0.27
AL117410_1(AL117410|pid:none) Homo sapiens mRNA; cDNA DKFZp586H1... 40 0.27
AF051850_1(AF051850|pid:none) Homo sapiens supervillin mRNA, com... 40 0.27
AL158167_3(AL158167|pid:none) Human DNA sequence from clone RP11... 40 0.27
(P06396) RecName: Full=Gelsolin; AltName: Full=Actin-depolymeriz... 40 0.27
AF088901_1(AF088901|pid:none) Lilium longiflorum actin bundling ... 40 0.27
AK304720_1(AK304720|pid:none) Homo sapiens cDNA FLJ53284 complet... 40 0.27
AK295201_1(AK295201|pid:none) Homo sapiens cDNA FLJ53327 complet... 40 0.27
AK304675_1(AK304675|pid:none) Homo sapiens cDNA FLJ56212 complet... 40 0.27
AK304799_1(AK304799|pid:none) Homo sapiens cDNA FLJ53285 complet... 40 0.27
AL158167_2(AL158167|pid:none) Human DNA sequence from clone RP11... 40 0.27
AK300631_1(AK300631|pid:none) Homo sapiens cDNA FLJ56154 complet... 40 0.27
AK302077_1(AK302077|pid:none) Homo sapiens cDNA FLJ60365 complet... 40 0.27
AK304629_1(AK304629|pid:none) Homo sapiens cDNA FLJ53698 complet... 40 0.27
AK096280_1(AK096280|pid:none) Homo sapiens cDNA FLJ38961 fis, cl... 40 0.27
AY893064_1(AY893064|pid:none) Synthetic construct Homo sapiens c... 40 0.27
AP008214_585(AP008214|pid:none) Oryza sativa (japonica cultivar-... 40 0.46
AY119662_1(AY119662|pid:none) Drosophila melanogaster SD07495 fu... 40 0.46
AL513122_6(AL513122|pid:none) Human DNA sequence from clone RP11... 40 0.46
AK150359_1(AK150359|pid:none) Mus musculus bone marrow macrophag... 39 0.60
CR859411_1(CR859411|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1... 39 0.60
AB170287_1(AB170287|pid:none) Macaca fascicularis brain cDNA clo... 39 0.60
AY380816_1(AY380816|pid:none) Mustela putorius furo smooth muscl... 39 0.79
CP000123_229(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 39 1.0
EU334660_1(EU334660|pid:none) Strongylocentrotus purpuratus vill... 39 1.0
AK341307_1(AK341307|pid:none) Acyrthosiphon pisum ACYPI008158 mR... 38 1.3
AY809768_1(AY809768|pid:none) Schistosoma japonicum SJCHGC06031 ... 38 1.3
FN313917_1(FN313917|pid:none) Schistosoma japonicum isolate Anhu... 38 1.3
A32621(A32621) gelsolin, cytosolic - mouse &J04953_1(J04953|pid... 38 1.8
AP008209_1498(AP008209|pid:none) Oryza sativa (japonica cultivar... 37 2.3
AY261827_1(AY261827|pid:none) Ciona intestinalis cytoplasmic gel... 36 5.1
A88536(A88536)protein B0523.5 [imported] - Caenorhabditis elegans 36 5.1
S44732(S44732)b0523.5 protein - Caenorhabditis elegans 36 5.1
(Q5HNS0) RecName: Full=Probable cell wall amidase lytH; ... 36 6.7
AP006716_1289(AP006716|pid:none) Staphylococcus haemolyticus JCS... 36 6.7
EU253976_1(EU253976|pid:none) Ajellomyces capsulatus L-ornithine... 35 8.7
>(Q27319) RecName: Full=Gelsolin, cytoplasmic; AltName:
Full=Actin-depolymerizing factor; Short=ADF;
&S53373(S53373) &Z29534_1(Z29534|pid:none)
Length = 754
Score = 71.2 bits (173), Expect = 1e-10
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 6/198 (3%)
Frame = +1
Query: 1522 IDTYSGLRARLVHCKGKKRILTKEVEISINSLNKMDAFVLDCGIENSNVGGESVDSNSHS 1701
+D + ARL H KG++ I ++VE+ + S+NK D F+LDCG S
Sbjct: 124 VDPDAPYPARLFHVKGRRNIRIRQVEVGVGSMNKGDCFILDCG----------------S 167
Query: 1702 TIFTWYGSKSTANXXXXXXXXXXXXXSHERGGHATIIKLDE---GDENELFYKRIGGGSS 1872
++ + G S + + G A +I +DE G E +GGGS
Sbjct: 168 QVYAYMGPSSRKMDRLKAIQAANPVRADDHAGKAKVIVIDETASGSEAGESSPGLGGGSP 227
Query: 1873 HKSTINPDGGDDLEAELNWASSFTLLKYLTDKDQLIH---IDTKSLSMELLESDGFYVLD 2043
G DD E + + TL D D +I I K L +L+S ++LD
Sbjct: 228 DDVADEDTGVDDSAFERSEVNVVTLHHIFEDGDGVIQTNMIGEKPLLQSMLDSGDCFLLD 287
Query: 2044 TVSEFYEWSGRNSDQSLK 2097
T Y W G S + K
Sbjct: 288 TGVGVYVWIGSGSSKKEK 305
Lambda K H
0.315 0.130 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,660,963,158
Number of extensions: 27168552
Number of successful extensions: 75153
Number of sequences better than 10.0: 137
Number of HSP's gapped: 74997
Number of HSP's successfully gapped: 140
Length of query: 721
Length of database: 1,061,185,681
Length adjustment: 136
Effective length of query: 585
Effective length of database: 616,676,753
Effective search space: 360755900505
Effective search space used: 360755900505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
10 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
3 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
1 |
| SF (FL, S) |
1 |
| CH (FL, L) |
4 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |