Contig-U16573-1
Contig ID Contig-U16573-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d
AATTGTCACATTAATTAAAAATAGAAAAAAAATCATTTTTAGGAAATCAA
CTAATATATTATTTTACTAATTACTATATAAATATATTAATTGAATTTAA
TTATTGTTTGGTTAGATTTTTTTTTAATATCTTAATATTTAAAGAAAAAA
AAAAAAAAATCATTAAATTTTAAAAGTAAAAATTGTTGTATTTATATAAA
TATATATATTTAA----------AAAAAAAAAAAAAAAAAAAGAATGGAT
GAAGAAAGAAAAAAAAGATTAGAGGATTTAAAACAACAAAGTTTAGAATT
AGAAAAGGAAGCACAAGAAAGAGAGAAAAGAAATGAAGAAAGAAAGAAAG
CACGTGAAGAACAACAAAGATTAGCAGCGGAACAAGAGAAAAAAGATGAA
GAAGAAAGATTAAAAAAACAAAAAGAACGTGAAGAGAGAAGAAAGAAACG
TGAGGAAGATGAAAAGATTCTAAAGGAAGAGATGGAGAAATTAGAGTCTG
ATAAAGCAAATAGAATAACATCGCCAAAAACTCCCACAAGTGGTAGTAGT
AGTATAGCATTATCACCATCAACATCATCTTATTCAATCTCTGAGAATAG
TGGTGGTGATTCATCAACTTCATTATTATCAGCACAAGCAATTTCAGCCA
AAGAAGAAAGAGAGAAAAGAAGAAAAGAATTGGAAGAGGAAGCTAAAAAA
TTAGAATTGGAACAACAAAAAATTAGAGAAGAACGTGAAAAAAGAAAAGA
AGAAAGAAGATTACAACAAGAAGAAGAACAAAGAAAACTTCAAGATTTAT
TGGATAAAAAAGATTCTGAAAAAATTGAAAAATTAAAACAAGAAGAAAAT
GAAAAATTAGAAAAAGAAGAAAAAGAGAGAATAGAAAAAGAATTAACTGA
TAAAAAAGAAAAAGAAGAAAAAGAATTGGCTGATAAATTAGAGAAAGAAC
GTCAAGAGAAAGAGTTGGCTGATAAACTTGAAAAGGAGAAAAAAGAAAAA
GAAGAAAAAGAATTGGCTGATAAACTTGAAAAGGAACGTTTAGATAAAGA
AAAAAAAGATAAAGAAGAAAAAGAATTGGCTGATAAACTTGAAAAAGAAT
CTCAAGAAAAAGAGTTGGCTGAGAAATTAGAGAAAGAGAAAGAATTGGCT
GATAAACTTGAAAAAGAACAAAAGGAAAAAGAAGAAAAAGAACGTCAAGA
GAAAGAATTGGCTGATAAACTTGCAAAAGAACAAAAGGAGAAAGAAGAGA
AAGAATTGGCTGATAAATTAGAAAAAGAACGTCAAGAGAAAGAATTGGCT
GATAAATTAGAAAAAGAAAAACAAGAAAAAGAATTGGCTGATAAATTGGA
AAAAGAAAAACAAGAAAAAGAATCACTTGAAAAATTAGAAAAAGAAAAAC
AAGAAAAAGAATTGGCTGATAAACTTGCAAAAGAACAAAAAGAAAAAGAA
GAAAAAGAAGAAAAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGA
AAGAAAAGATAAAGAATTAGCAGCAGCAGCAGCAGCAGCAGAAACAGAAA
AACTTGAAAAAGAACGTTTAGAGAAAGAGAAAAAAGAATTGGAAGAAAAA
GAATTGGCAGAA

Gap gap included
Contig length 1602
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4571215
End point 4569614
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 15
Link to clone list U16573
List of clone(s)

est1=SFJ180F,1,154
est2=SFL313F,17,154
est3=SHJ355F,24,154
est4=SLI863F,25,207
est5=SLK675F,26,213
est6=SHC305F,41,154
est7=SHD121F,41,154
est8=SHJ174F,41,154
est9=SLJ834F,214,516
est10=SHF529F,232,792
est11=SLI863Z,718,1228
est12=SFJ180Z,754,1112
est13=SHD121Z,792,1042
est14=SFL313Z,1124,1602
est15=SLK675Z,1167,1483
Translated Amino Acid sequence
lsh*lkiekksflgnqliyyftnyyiniliefnyclvrfffnilifkekkkkiikf*k*K
LLYLYKYIYL---

---KKKKKKRMDEERKKRLEDLKQQSLELEKEAQEREKRNEERKKAREEQQRLAAEQEKK
DEEERLKKQKEREERRKKREEDEKILKEEMEKLESDKANRITSPKTPTSGSSSIALSPST
SSYSISENSGGDSSTSLLSAQAISAKEEREKRRKELEEEAKKLELEQQKIREEREKRKEE
RRLQQEEEQRKLQDLLDKKDSEKIEKLKQEENEKLEKEEKERIEKELTDKKEKEEKELAD
KLEKERQEKELADKLEKEKKEKEEKELADKLEKERLDKEKKDKEEKELADKLEKESQEKE
LAEKLEKEKELADKLEKEQKEKEEKERQEKELADKLAKEQKEKEEKELADKLEKERQEKE
LADKLEKEKQEKELADKLEKEKQEKESLEKLEKEKQEKELADKLAKEQKEKEEKEEKEEK
EKQEKEEKERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAE


Translated Amino Acid sequence (All Frames)
Frame A:
nchin*k*kknhf*ein*yiilliti*iy*lnliivwldfflis*ylkkkkkkslnfksk
ncciyiniyi*---

---KKKKKKRMDEERKKRLEDLKQQSLELEKEAQEREKRNEERKKAREEQQRLAAEQEKK
DEEERLKKQKEREERRKKREEDEKILKEEMEKLESDKANRITSPKTPTSGSSSIALSPST
SSYSISENSGGDSSTSLLSAQAISAKEEREKRRKELEEEAKKLELEQQKIREEREKRKEE
RRLQQEEEQRKLQDLLDKKDSEKIEKLKQEENEKLEKEEKERIEKELTDKKEKEEKELAD
KLEKERQEKELADKLEKEKKEKEEKELADKLEKERLDKEKKDKEEKELADKLEKESQEKE
LAEKLEKEKELADKLEKEQKEKEEKERQEKELADKLAKEQKEKEEKELADKLEKERQEKE
LADKLEKEKQEKELADKLEKEKQEKESLEKLEKEKQEKELADKLAKEQKEKEEKEEKEEK
EKQEKEEKERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAE

Frame B:
ivtliknrkkiifrkstnilfy*llykyin*i*llfg*iff*ylni*rkkkknh*ilkvk
ivvfi*iyif---

---kkkkkkewmkkekkd*ri*nnkv*n*krkhkkerkemkkerkhvknnkd*qrnkrkk
mkkkd*knkknvkreernvrkmkrf*rkrwrn*slikqie*hrqklpqvvvvv*hyhhqh
hliqslrivvvihqlhyyqhkqfqpkkkerkeeknwkrklkn*nwnnkkleknvkkekkk
edynkkknkenfkiywikkilkklkn*nkkkmkn*kkkkkre*kkn*likkkkkkknwli
n*rknvkrkswlinlkrrkkkkkkknwlinlkrnv*ikkkkikkkknwlinlkknlkkks
wlrn*rkrknwlinlkknkrkkkkknvkrknwlinlqknkrrkkrknwlin*kknvkrkn
wlin*kkknkkknwlinwkkknkkknhlkn*kkknkkknwlinlqknkkkkkkkkkkkkk
rnkkkkkkkekikn*qqqqqqqkqknlkknv*rkrkknwkkknwq

Frame C:
lsh*lkiekksflgnqliyyftnyyiniliefnyclvrfffnilifkekkkkiikf*k*K
LLYLYKYIYL---

---kkkkkkng*rkkkkirgfkttkfrirkgstrkrekk*rkkest*rttkissgtrekr
*rrkikktkrt*rekket*gr*kdskgrdgeirv**sk*nniaknshkw***ysiitini
ilfnl*e*ww*finfiiistsnfsqrrkrekkkrigrgs*kirigttkn*rrt*kkkrrk
kittrrrtkktsrfig*krf*kn*kiktrrk*kirkrrkrenrkrin**krkrrkrig**
irertsrervg**t*kgekrkrrkrig**t*kgtfr*rkkr*rrkrig**t*krisrkrv
g*eirererig**t*krtkgkrrkrtsrerig**tckrtkgerrerig**irkrtsreri
g**irkrktrkrig**igkrktrkrit*kirkrktrkrig**tckrtkrkrrkrrkrrkr
etrkrrkrkkr*risssssssrnrkt*krtfrerekrigrkrigr

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16573-1 (Contig-U16573-1Q)
/CSM_Contig/Contig-U16573-1Q.Seq.d
(1612 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Conti... 317 3e-86
Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Conti... 317 3e-86
Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Conti... 109 1e-23
Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Conti... 54 7e-07
Contig-U15011-1 (Contig-U15011-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U16306-1 (Contig-U16306-1Q) /CSM_Contig/Conti... 40 0.010
Contig-U15618-1 (Contig-U15618-1Q) /CSM_Contig/Conti... 40 0.010
Contig-U13955-1 (Contig-U13955-1Q) /CSM_Contig/Conti... 38 0.041
Contig-U10647-1 (Contig-U10647-1Q) /CSM_Contig/Conti... 38 0.041

>Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Contig-U16575-1Q.Seq.d
Length = 1462

Score = 317 bits (160), Expect = 3e-86
Identities = 160/160 (100%)
Strand = Plus / Plus


Query: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 289


Query: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 349


Query: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649
||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttcatcaacttcattattatcagcacaagcaatttcagcc 389


Score = 109 bits (55), Expect = 1e-23
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 869


Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045
||||||||||||||||||||||||||||||||||
Sbjct: 752 attggctgataaacttgaaaaggaacgtttagat 785


Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 267 gattagaggatttaaaacaacaaagtttagaatt 300
||||||||||||||||||||||||||||||||||
Sbjct: 6 gattagaggatttaaaacaacaaagtttagaatt 39


Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
||||||||||||| | ||||||||| |||||| ||||| |||||||| ||||||
Sbjct: 995 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 1049


Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128
||||||||||||| | ||||||||| ||||||||||| |||||||| |||||
Sbjct: 1034 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 1087


Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
|||||||||||||||||||||||||
Sbjct: 884 attggctgataaacttgaaaaagaa 908


Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122
||||||||||||| | || |||||| |||||| ||||||||||||||
Sbjct: 665 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 712


Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1013 ttggctgataaacttgaaaagga 1035
|||||||||||||||||||||||
Sbjct: 705 ttggctgataaacttgaaaagga 727


Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||||||| ||||
Sbjct: 884 attggctgataaacttgaaaaagaac 909


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 947 attggctgataaacttgcaaaagaa 971


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaa 1095
|||||||||||||||||||||
Sbjct: 752 attggctgataaacttgaaaa 772


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaa 1032
|||||||||||||||||||||
Sbjct: 815 attggctgataaacttgaaaa 835


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 362 caacaaagattagcagcggaa 382
|||||||||||||||||||||
Sbjct: 101 caacaaagattagcagcggaa 121


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 1151 attggctgataaacttgcaaaagaa 1175


Score = 40.1 bits (20), Expect = 0.010
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1076 ttggctgataaacttgaaaa 1095
||||||||||||||||||||
Sbjct: 705 ttggctgataaacttgaaaa 724


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 947 attggctgataaacttgca 965


Score = 38.2 bits (19), Expect = 0.041
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1022 aaacttgaaaaggaacgtttaga 1044
||||||||||| |||||||||||
Sbjct: 1290 aaacttgaaaaagaacgtttaga 1312


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 1151 attggctgataaacttgca 1169


Score = 38.2 bits (19), Expect = 0.041
Identities = 34/39 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113
||||||||||||| | ||||||||| |||||||||||
Sbjct: 1073 attggctgataaattggaaaaagaaaaacaagaaaaaga 1111


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 947 attggctgataaacttgcaaaagaac 972


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 1151 attggctgataaacttgcaaaagaac 1176


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 884 attggctgataaacttg 900


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 815 attggctgataaacttg 831


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 752 attggctgataaacttg 768


Score = 32.2 bits (16), Expect = 2.6
Identities = 25/28 (89%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgt 1039
||||||||||||| | ||||| ||||||
Sbjct: 995 attggctgataaattagaaaaagaacgt 1022


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1208 ttggctgataaacttg 1223
||||||||||||||||
Sbjct: 705 ttggctgataaacttg 720


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1085 aaacttgaaaaagaat 1100
||||||||||||||||
Sbjct: 1368 aaacttgaaaaagaat 1383


Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1103 caagaaaaagagttggctga 1122
||||||||||| ||||||||
Sbjct: 1140 caagaaaaagaattggctga 1159


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 964 gttggctgataaactt 979
||||||||||||||||
Sbjct: 704 gttggctgataaactt 719


>Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d
Length = 1612

Score = 317 bits (160), Expect = 3e-86
Identities = 160/160 (100%)
Strand = Plus / Plus


Query: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549


Query: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609


Query: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649
||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649


Score = 184 bits (93), Expect = 3e-46
Identities = 127/144 (88%)
Strand = Plus / Plus


Query: 1 aattgtcacattaattaaaaatagnnnnnnnntcatttttaggaaatcaactaatatatt 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 aattgtcacattaattaaaaatagaaaaaaaatcatttttaggaaatcaactaatatatt 60


Query: 61 attttactaattactatataaatatattaattgaatttaattattgtttggttagannnn 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attttactaattactatataaatatattaattgaatttaattattgtttggttagatttt 120


Query: 121 nnnnnaatatcttaatatttaaag 144
|||||||||||||||||||
Sbjct: 121 tttttaatatcttaatatttaaag 144


Score = 109 bits (55), Expect = 1e-23
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129


Score = 67.9 bits (34), Expect = 5e-11
Identities = 50/58 (86%)
Strand = Plus / Plus


Query: 243 gaatggatgaagaaagnnnnnnnngattagaggatttaaaacaacaaagtttagaatt 300
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 243 gaatggatgaagaaagaaaaaaaagattagaggatttaaaacaacaaagtttagaatt 300


Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045
||||||||||||||||||||||||||||||||||
Sbjct: 1012 attggctgataaacttgaaaaggaacgtttagat 1045


Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 160 tcattaaattttaaaagtaaaaattgttgtatt 192
|||||||||||||||||||||||||||||||||
Sbjct: 160 tcattaaattttaaaagtaaaaattgttgtatt 192


Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
||||||||||||| | ||||||||| |||||| ||||| |||||||| ||||||
Sbjct: 1255 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 1309


Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128
||||||||||||| | ||||||||| ||||||||||| |||||||| |||||
Sbjct: 1294 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 1347


Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
|||||||||||||||||||||||||
Sbjct: 1144 attggctgataaacttgaaaaagaa 1168


Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122
||||||||||||| | || |||||| |||||| ||||||||||||||
Sbjct: 925 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 972


Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1013 ttggctgataaacttgaaaagga 1035
|||||||||||||||||||||||
Sbjct: 965 ttggctgataaacttgaaaagga 987


Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||||||| ||||
Sbjct: 1144 attggctgataaacttgaaaaagaac 1169


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 362 caacaaagattagcagcggaa 382
|||||||||||||||||||||
Sbjct: 362 caacaaagattagcagcggaa 382


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 1207 attggctgataaacttgcaaaagaa 1231


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 1411 attggctgataaacttgcaaaagaa 1435


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaa 1032
|||||||||||||||||||||
Sbjct: 1075 attggctgataaacttgaaaa 1095


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaa 1095
|||||||||||||||||||||
Sbjct: 1012 attggctgataaacttgaaaa 1032


Score = 40.1 bits (20), Expect = 0.010
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1076 ttggctgataaacttgaaaa 1095
||||||||||||||||||||
Sbjct: 965 ttggctgataaacttgaaaa 984


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 1411 attggctgataaacttgca 1429


Score = 38.2 bits (19), Expect = 0.041
Identities = 34/39 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113
||||||||||||| | ||||||||| |||||||||||
Sbjct: 1333 attggctgataaattggaaaaagaaaaacaagaaaaaga 1371


Score = 38.2 bits (19), Expect = 0.041
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1022 aaacttgaaaaggaacgtttaga 1044
||||||||||| |||||||||||
Sbjct: 1550 aaacttgaaaaagaacgtttaga 1572


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 1207 attggctgataaacttgca 1225


Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 788 cttcaagatttattggat 805
||||||||||||||||||
Sbjct: 788 cttcaagatttattggat 805


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 1207 attggctgataaacttgcaaaagaac 1232


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 1411 attggctgataaacttgcaaaagaac 1436


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 1012 attggctgataaacttg 1028


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 1144 attggctgataaacttg 1160


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 1075 attggctgataaacttg 1091


Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1103 caagaaaaagagttggctga 1122
||||||||||| ||||||||
Sbjct: 1400 caagaaaaagaattggctga 1419


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1208 ttggctgataaacttg 1223
||||||||||||||||
Sbjct: 965 ttggctgataaacttg 980


Score = 32.2 bits (16), Expect = 2.6
Identities = 25/28 (89%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgt 1039
||||||||||||| | ||||| ||||||
Sbjct: 1255 attggctgataaattagaaaaagaacgt 1282


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 964 gttggctgataaactt 979
||||||||||||||||
Sbjct: 964 gttggctgataaactt 979


>Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Contig-U16574-1Q.Seq.d
Length = 1883

Score = 109 bits (55), Expect = 1e-23
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 353


Score = 67.9 bits (34), Expect = 5e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045
||||||||||||||||||||||||||||||||||
Sbjct: 236 attggctgataaacttgaaaaggaacgtttagat 269


Score = 54.0 bits (27), Expect = 7e-07
Identities = 48/55 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
||||||||||||| | ||||||||| |||||| ||||| |||||||| ||||||
Sbjct: 479 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 533


Score = 52.0 bits (26), Expect = 3e-06
Identities = 47/54 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128
||||||||||||| | ||||||||| ||||||||||| |||||||| |||||
Sbjct: 518 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 571


Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
|||||||||||||||||||||||||
Sbjct: 368 attggctgataaacttgaaaaagaa 392


Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/48 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122
||||||||||||| | || |||||| |||||| ||||||||||||||
Sbjct: 149 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 196


Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1013 ttggctgataaacttgaaaagga 1035
|||||||||||||||||||||||
Sbjct: 189 ttggctgataaacttgaaaagga 211


Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
|||||||||||| |||||||||||||
Sbjct: 944 attggctgataagcttgaaaaggaac 969


Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||||||| ||||
Sbjct: 368 attggctgataaacttgaaaaagaac 393


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 431 attggctgataaacttgcaaaagaa 455


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 635 attggctgataaacttgcaaaagaa 659


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaa 1032
|||||||||||||||||||||
Sbjct: 299 attggctgataaacttgaaaa 319


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaa 1099
||||||||||||||||| |||||||
Sbjct: 1046 attggctgataaacttgcaaaagaa 1070


Score = 42.1 bits (21), Expect = 0.003
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaa 1095
|||||||||||||||||||||
Sbjct: 236 attggctgataaacttgaaaa 256


Score = 40.1 bits (20), Expect = 0.010
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1076 ttggctgataaacttgaaaa 1095
||||||||||||||||||||
Sbjct: 189 ttggctgataaacttgaaaa 208


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 431 attggctgataaacttgca 449


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 1046 attggctgataaacttgca 1064


Score = 38.2 bits (19), Expect = 0.041
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttgca 1225
|||||||||||||||||||
Sbjct: 635 attggctgataaacttgca 653


Score = 38.2 bits (19), Expect = 0.041
Identities = 34/39 (87%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113
||||||||||||| | ||||||||| |||||||||||
Sbjct: 557 attggctgataaattggaaaaagaaaaacaagaaaaaga 595


Score = 38.2 bits (19), Expect = 0.041
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1022 aaacttgaaaaggaacgtttaga 1044
||||||||||| |||||||||||
Sbjct: 774 aaacttgaaaaagaacgtttaga 796


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 431 attggctgataaacttgcaaaagaac 456


Score = 36.2 bits (18), Expect = 0.16
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaac 1037
||||||||||||||||| ||| ||||
Sbjct: 635 attggctgataaacttgcaaaagaac 660


Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 788 cttcaagatttattggat 805
||||||||||||||||||
Sbjct: 12 cttcaagatttattggat 29


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 368 attggctgataaacttg 384


Score = 34.2 bits (17), Expect = 0.65
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaa 1095
|||||||||||| ||||||||
Sbjct: 944 attggctgataagcttgaaaa 964


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttg 1028
|||||||||||||||||
Sbjct: 1046 attggctgataaacttg 1062


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 236 attggctgataaacttg 252


Score = 34.2 bits (17), Expect = 0.65
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1207 attggctgataaacttg 1223
|||||||||||||||||
Sbjct: 299 attggctgataaacttg 315


Score = 32.2 bits (16), Expect = 2.6
Identities = 25/28 (89%)
Strand = Plus / Plus


Query: 1012 attggctgataaacttgaaaaggaacgt 1039
||||||||||||| | ||||| ||||||
Sbjct: 479 attggctgataaattagaaaaagaacgt 506


Score = 32.2 bits (16), Expect = 2.6
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaaga 1098
||||||||||||| | ||||||||
Sbjct: 1007 attggctgataaattagaaaaaga 1030


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1085 aaacttgaaaaagaat 1100
||||||||||||||||
Sbjct: 852 aaacttgaaaaagaat 867


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 964 gttggctgataaactt 979
||||||||||||||||
Sbjct: 188 gttggctgataaactt 203


Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 1103 caagaaaaagagttggctga 1122
||||||||||| ||||||||
Sbjct: 624 caagaaaaagaattggctga 643


Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1208 ttggctgataaacttg 1223
||||||||||||||||
Sbjct: 189 ttggctgataaacttg 204


Score = 32.2 bits (16), Expect = 2.6
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 1075 attggctgataaacttgaaaaaga 1098
||||||||||||| | ||||||||
Sbjct: 1100 attggctgataaattagaaaaaga 1123


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,800
Number of Sequences: 8402
Number of extensions: 15800
Number of successful extensions: 2180
Number of sequences better than 10.0: 121
length of query: 1612
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1596
effective length of database: 7,941,110
effective search space: 12674011560
effective search space used: 12674011560
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 4.12
Homology vs DNA
Query= Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d
(1612 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ394487) Dictyostelium discoideum cDNA clone:dds35i07, 5' ... 303 1e-77 1
(BJ368438) Dictyostelium discoideum cDNA clone:ddc46p15, 5' ... 303 1e-77 1
(BJ361999) Dictyostelium discoideum cDNA clone:ddc19n13, 5' ... 303 1e-77 1
(BJ329747) Dictyostelium discoideum cDNA clone:dda26k02, 5' ... 303 1e-77 1
(BJ346295) Dictyostelium discoideum cDNA clone:dda30a16, 3' ... 86 5e-12 1
(BJ389754) Dictyostelium discoideum cDNA clone:dds19o19, 5' ... 48 1e-10 3
(BJ370643) Dictyostelium discoideum cDNA clone:ddc54i19, 5' ... 46 6e-10 3
(BJ329021) Dictyostelium discoideum cDNA clone:dda30a16, 5' ... 40 3e-08 3
(AU060470) Dictyostelium discoideum slug cDNA, clone SLJ834. 60 5e-05 2
(BJ329989) Dictyostelium discoideum cDNA clone:dda27a06, 5' ... 38 0.017 2
(BJ396365) Dictyostelium discoideum cDNA clone:dds42n13, 5' ... 38 0.017 2
(BJ368495) Dictyostelium discoideum cDNA clone:ddc46o24, 5' ... 38 0.017 2
(AU062276) Dictyostelium discoideum slug cDNA, clone SLI863. 38 0.024 2
(AU060629) Dictyostelium discoideum slug cDNA, clone SLK675. 38 0.025 2
(BJ333502) Dictyostelium discoideum cDNA clone:dda42p24, 5' ... 38 0.22 2
(EY325928) CAWY11259.fwd CAWY Helobdella robusta Subtracted ... 36 0.77 2
(BJ390623) Dictyostelium discoideum cDNA clone:dds23j03, 5' ... 38 0.94 2
(AC119103) Rattus norvegicus clone CH230-130P8, *** SEQUENCI... 48 1.1 1
(BZ208706) CH230-437O13.TJ CHORI-230 Segment 2 Rattus norveg... 48 1.1 1
(AC182981) Bos taurus clone CH240-77B17, WORKING DRAFT SEQUE... 34 2.0 2
(AC178794) Strongylocentrotus purpuratus clone R3-29N24, WOR... 34 7.7 2
(AC178950) Strongylocentrotus purpuratus clone R3-3121H6, WO... 34 7.7 2
(AC179365) Strongylocentrotus purpuratus clone R3-59I1, WORK... 34 7.8 2
(AC179235) Strongylocentrotus purpuratus clone R3-41M21, WOR... 32 7.9 2

>(BJ394487) Dictyostelium discoideum cDNA clone:dds35i07, 5' end,
single read.
Length = 561

Score = 303 bits (153), Expect = 1e-77
Identities = 153/153 (100%)
Strand = Plus / Plus


Query: 497 tctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtagtagtata 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtagtagtata 315


Query: 557 gcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtgattcatca 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtgattcatca 375


Query: 617 acttcattattatcagcacaagcaatttcagcc 649
|||||||||||||||||||||||||||||||||
Sbjct: 376 acttcattattatcagcacaagcaatttcagcc 408

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 273,931,480
Number of extensions: 17257496
Number of successful extensions: 1264212
Number of sequences better than 10.0: 24
Length of query: 1612
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1588
Effective length of database: 99,340,224,878
Effective search space: 157752277106264
Effective search space used: 157752277106264
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.28
Homology vs Protein
Query= Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d
(1612 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 446,543,060
Number of extensions: 4692742
Number of successful extensions: 11908
Number of sequences better than 10.0: 0
Number of HSP's gapped: 11890
Number of HSP's successfully gapped: 0
Length of query: 537
Length of database: 1,061,185,681
Length adjustment: 134
Effective length of query: 403
Effective length of database: 623,213,649
Effective search space: 251155100547
Effective search space used: 251155100547
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.44 gvh: 0.08 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.04
nuc: 0.69 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U16573-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 3
SS (DIR, S) 0
SH (FL, L) 5
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0