Contig-U16573-1 |
Contig ID |
Contig-U16573-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1602 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
4571215 |
End point |
4569614 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
10 |
Number of EST |
15 |
Link to clone list |
U16573 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
Query= Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d (1612 letters)
Database: CSM 8402 sequences; 8,075,542 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Conti... 317 3e-86 Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Conti... 317 3e-86 Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Conti... 109 1e-23 Contig-U16576-1 (Contig-U16576-1Q) /CSM_Contig/Conti... 54 7e-07 Contig-U15011-1 (Contig-U15011-1Q) /CSM_Contig/Conti... 42 0.003 Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Conti... 42 0.003 Contig-U16306-1 (Contig-U16306-1Q) /CSM_Contig/Conti... 40 0.010 Contig-U15618-1 (Contig-U15618-1Q) /CSM_Contig/Conti... 40 0.010 Contig-U13955-1 (Contig-U13955-1Q) /CSM_Contig/Conti... 38 0.041 Contig-U10647-1 (Contig-U10647-1Q) /CSM_Contig/Conti... 38 0.041
>Contig-U16575-1 (Contig-U16575-1Q) /CSM_Contig/Contig-U16575-1Q.Seq.d Length = 1462
Score = 317 bits (160), Expect = 3e-86 Identities = 160/160 (100%) Strand = Plus / Plus
Query: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 289
Query: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 349
Query: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649 |||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ttcatcaacttcattattatcagcacaagcaatttcagcc 389
Score = 109 bits (55), Expect = 1e-23 Identities = 55/55 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 869
Score = 67.9 bits (34), Expect = 5e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045 |||||||||||||||||||||||||||||||||| Sbjct: 752 attggctgataaacttgaaaaggaacgtttagat 785
Score = 67.9 bits (34), Expect = 5e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 267 gattagaggatttaaaacaacaaagtttagaatt 300 |||||||||||||||||||||||||||||||||| Sbjct: 6 gattagaggatttaaaacaacaaagtttagaatt 39
Score = 54.0 bits (27), Expect = 7e-07 Identities = 48/55 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||| | ||||||||| |||||| ||||| |||||||| |||||| Sbjct: 995 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 1049
Score = 52.0 bits (26), Expect = 3e-06 Identities = 47/54 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128 ||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| Sbjct: 1034 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 1087
Score = 50.1 bits (25), Expect = 1e-05 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||||||||||| Sbjct: 884 attggctgataaacttgaaaaagaa 908
Score = 48.1 bits (24), Expect = 4e-05 Identities = 42/48 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122 ||||||||||||| | || |||||| |||||| |||||||||||||| Sbjct: 665 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 712
Score = 46.1 bits (23), Expect = 2e-04 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 1013 ttggctgataaacttgaaaagga 1035 ||||||||||||||||||||||| Sbjct: 705 ttggctgataaacttgaaaagga 727
Score = 44.1 bits (22), Expect = 7e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||||||| |||| Sbjct: 884 attggctgataaacttgaaaaagaac 909
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 947 attggctgataaacttgcaaaagaa 971
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaa 1095 ||||||||||||||||||||| Sbjct: 752 attggctgataaacttgaaaa 772
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaa 1032 ||||||||||||||||||||| Sbjct: 815 attggctgataaacttgaaaa 835
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 362 caacaaagattagcagcggaa 382 ||||||||||||||||||||| Sbjct: 101 caacaaagattagcagcggaa 121
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 1151 attggctgataaacttgcaaaagaa 1175
Score = 40.1 bits (20), Expect = 0.010 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1076 ttggctgataaacttgaaaa 1095 |||||||||||||||||||| Sbjct: 705 ttggctgataaacttgaaaa 724
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 947 attggctgataaacttgca 965
Score = 38.2 bits (19), Expect = 0.041 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 1022 aaacttgaaaaggaacgtttaga 1044 ||||||||||| ||||||||||| Sbjct: 1290 aaacttgaaaaagaacgtttaga 1312
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 1151 attggctgataaacttgca 1169
Score = 38.2 bits (19), Expect = 0.041 Identities = 34/39 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113 ||||||||||||| | ||||||||| ||||||||||| Sbjct: 1073 attggctgataaattggaaaaagaaaaacaagaaaaaga 1111
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 947 attggctgataaacttgcaaaagaac 972
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 1151 attggctgataaacttgcaaaagaac 1176
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 884 attggctgataaacttg 900
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 815 attggctgataaacttg 831
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 752 attggctgataaacttg 768
Score = 32.2 bits (16), Expect = 2.6 Identities = 25/28 (89%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgt 1039 ||||||||||||| | ||||| |||||| Sbjct: 995 attggctgataaattagaaaaagaacgt 1022
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1208 ttggctgataaacttg 1223 |||||||||||||||| Sbjct: 705 ttggctgataaacttg 720
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1085 aaacttgaaaaagaat 1100 |||||||||||||||| Sbjct: 1368 aaacttgaaaaagaat 1383
Score = 32.2 bits (16), Expect = 2.6 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1103 caagaaaaagagttggctga 1122 ||||||||||| |||||||| Sbjct: 1140 caagaaaaagaattggctga 1159
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 964 gttggctgataaactt 979 |||||||||||||||| Sbjct: 704 gttggctgataaactt 719
>Contig-U16573-1 (Contig-U16573-1Q) /CSM_Contig/Contig-U16573-1Q.Seq.d Length = 1612
Score = 317 bits (160), Expect = 3e-86 Identities = 160/160 (100%) Strand = Plus / Plus
Query: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 attagagtctgataaagcaaatagaataacatcgccaaaaactcccacaagtggtagtag 549
Query: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 tagtatagcattatcaccatcaacatcatcttattcaatctctgagaatagtggtggtga 609
Query: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649 |||||||||||||||||||||||||||||||||||||||| Sbjct: 610 ttcatcaacttcattattatcagcacaagcaatttcagcc 649
Score = 184 bits (93), Expect = 3e-46 Identities = 127/144 (88%) Strand = Plus / Plus
Query: 1 aattgtcacattaattaaaaatagnnnnnnnntcatttttaggaaatcaactaatatatt 60 |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1 aattgtcacattaattaaaaatagaaaaaaaatcatttttaggaaatcaactaatatatt 60
Query: 61 attttactaattactatataaatatattaattgaatttaattattgtttggttagannnn 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attttactaattactatataaatatattaattgaatttaattattgtttggttagatttt 120
Query: 121 nnnnnaatatcttaatatttaaag 144 ||||||||||||||||||| Sbjct: 121 tttttaatatcttaatatttaaag 144
Score = 109 bits (55), Expect = 1e-23 Identities = 55/55 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129
Score = 67.9 bits (34), Expect = 5e-11 Identities = 50/58 (86%) Strand = Plus / Plus
Query: 243 gaatggatgaagaaagnnnnnnnngattagaggatttaaaacaacaaagtttagaatt 300 |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 243 gaatggatgaagaaagaaaaaaaagattagaggatttaaaacaacaaagtttagaatt 300
Score = 67.9 bits (34), Expect = 5e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045 |||||||||||||||||||||||||||||||||| Sbjct: 1012 attggctgataaacttgaaaaggaacgtttagat 1045
Score = 65.9 bits (33), Expect = 2e-10 Identities = 33/33 (100%) Strand = Plus / Plus
Query: 160 tcattaaattttaaaagtaaaaattgttgtatt 192 ||||||||||||||||||||||||||||||||| Sbjct: 160 tcattaaattttaaaagtaaaaattgttgtatt 192
Score = 54.0 bits (27), Expect = 7e-07 Identities = 48/55 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||| | ||||||||| |||||| ||||| |||||||| |||||| Sbjct: 1255 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 1309
Score = 52.0 bits (26), Expect = 3e-06 Identities = 47/54 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128 ||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| Sbjct: 1294 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 1347
Score = 50.1 bits (25), Expect = 1e-05 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||||||||||| Sbjct: 1144 attggctgataaacttgaaaaagaa 1168
Score = 48.1 bits (24), Expect = 4e-05 Identities = 42/48 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122 ||||||||||||| | || |||||| |||||| |||||||||||||| Sbjct: 925 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 972
Score = 46.1 bits (23), Expect = 2e-04 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 1013 ttggctgataaacttgaaaagga 1035 ||||||||||||||||||||||| Sbjct: 965 ttggctgataaacttgaaaagga 987
Score = 44.1 bits (22), Expect = 7e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||||||| |||| Sbjct: 1144 attggctgataaacttgaaaaagaac 1169
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 362 caacaaagattagcagcggaa 382 ||||||||||||||||||||| Sbjct: 362 caacaaagattagcagcggaa 382
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 1207 attggctgataaacttgcaaaagaa 1231
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 1411 attggctgataaacttgcaaaagaa 1435
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaa 1032 ||||||||||||||||||||| Sbjct: 1075 attggctgataaacttgaaaa 1095
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaa 1095 ||||||||||||||||||||| Sbjct: 1012 attggctgataaacttgaaaa 1032
Score = 40.1 bits (20), Expect = 0.010 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1076 ttggctgataaacttgaaaa 1095 |||||||||||||||||||| Sbjct: 965 ttggctgataaacttgaaaa 984
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 1411 attggctgataaacttgca 1429
Score = 38.2 bits (19), Expect = 0.041 Identities = 34/39 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113 ||||||||||||| | ||||||||| ||||||||||| Sbjct: 1333 attggctgataaattggaaaaagaaaaacaagaaaaaga 1371
Score = 38.2 bits (19), Expect = 0.041 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 1022 aaacttgaaaaggaacgtttaga 1044 ||||||||||| ||||||||||| Sbjct: 1550 aaacttgaaaaagaacgtttaga 1572
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 1207 attggctgataaacttgca 1225
Score = 36.2 bits (18), Expect = 0.16 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 788 cttcaagatttattggat 805 |||||||||||||||||| Sbjct: 788 cttcaagatttattggat 805
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 1207 attggctgataaacttgcaaaagaac 1232
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 1411 attggctgataaacttgcaaaagaac 1436
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 1012 attggctgataaacttg 1028
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 1144 attggctgataaacttg 1160
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 1075 attggctgataaacttg 1091
Score = 32.2 bits (16), Expect = 2.6 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1103 caagaaaaagagttggctga 1122 ||||||||||| |||||||| Sbjct: 1400 caagaaaaagaattggctga 1419
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1208 ttggctgataaacttg 1223 |||||||||||||||| Sbjct: 965 ttggctgataaacttg 980
Score = 32.2 bits (16), Expect = 2.6 Identities = 25/28 (89%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgt 1039 ||||||||||||| | ||||| |||||| Sbjct: 1255 attggctgataaattagaaaaagaacgt 1282
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 964 gttggctgataaactt 979 |||||||||||||||| Sbjct: 964 gttggctgataaactt 979
>Contig-U16574-1 (Contig-U16574-1Q) /CSM_Contig/Contig-U16574-1Q.Seq.d Length = 1883
Score = 109 bits (55), Expect = 1e-23 Identities = 55/55 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 353
Score = 67.9 bits (34), Expect = 5e-11 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgtttagat 1045 |||||||||||||||||||||||||||||||||| Sbjct: 236 attggctgataaacttgaaaaggaacgtttagat 269
Score = 54.0 bits (27), Expect = 7e-07 Identities = 48/55 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatta 1129 ||||||||||||| | ||||||||| |||||| ||||| |||||||| |||||| Sbjct: 479 attggctgataaattagaaaaagaacgtcaagagaaagaattggctgataaatta 533
Score = 52.0 bits (26), Expect = 3e-06 Identities = 47/54 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctgagaaatt 1128 ||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| Sbjct: 518 attggctgataaattagaaaaagaaaaacaagaaaaagaattggctgataaatt 571
Score = 50.1 bits (25), Expect = 1e-05 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||||||||||| Sbjct: 368 attggctgataaacttgaaaaagaa 392
Score = 48.1 bits (24), Expect = 4e-05 Identities = 42/48 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaagagttggctga 1122 ||||||||||||| | || |||||| |||||| |||||||||||||| Sbjct: 149 attggctgataaattagagaaagaacgtcaagagaaagagttggctga 196
Score = 46.1 bits (23), Expect = 2e-04 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 1013 ttggctgataaacttgaaaagga 1035 ||||||||||||||||||||||| Sbjct: 189 ttggctgataaacttgaaaagga 211
Score = 44.1 bits (22), Expect = 7e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 |||||||||||| ||||||||||||| Sbjct: 944 attggctgataagcttgaaaaggaac 969
Score = 44.1 bits (22), Expect = 7e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||||||| |||| Sbjct: 368 attggctgataaacttgaaaaagaac 393
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 431 attggctgataaacttgcaaaagaa 455
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 635 attggctgataaacttgcaaaagaa 659
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaa 1032 ||||||||||||||||||||| Sbjct: 299 attggctgataaacttgaaaa 319
Score = 42.1 bits (21), Expect = 0.003 Identities = 24/25 (96%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaa 1099 ||||||||||||||||| ||||||| Sbjct: 1046 attggctgataaacttgcaaaagaa 1070
Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaa 1095 ||||||||||||||||||||| Sbjct: 236 attggctgataaacttgaaaa 256
Score = 40.1 bits (20), Expect = 0.010 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 1076 ttggctgataaacttgaaaa 1095 |||||||||||||||||||| Sbjct: 189 ttggctgataaacttgaaaa 208
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 431 attggctgataaacttgca 449
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 1046 attggctgataaacttgca 1064
Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttgca 1225 ||||||||||||||||||| Sbjct: 635 attggctgataaacttgca 653
Score = 38.2 bits (19), Expect = 0.041 Identities = 34/39 (87%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaagaatctcaagaaaaaga 1113 ||||||||||||| | ||||||||| ||||||||||| Sbjct: 557 attggctgataaattggaaaaagaaaaacaagaaaaaga 595
Score = 38.2 bits (19), Expect = 0.041 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 1022 aaacttgaaaaggaacgtttaga 1044 ||||||||||| ||||||||||| Sbjct: 774 aaacttgaaaaagaacgtttaga 796
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 431 attggctgataaacttgcaaaagaac 456
Score = 36.2 bits (18), Expect = 0.16 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaac 1037 ||||||||||||||||| ||| |||| Sbjct: 635 attggctgataaacttgcaaaagaac 660
Score = 36.2 bits (18), Expect = 0.16 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 788 cttcaagatttattggat 805 |||||||||||||||||| Sbjct: 12 cttcaagatttattggat 29
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 368 attggctgataaacttg 384
Score = 34.2 bits (17), Expect = 0.65 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaa 1095 |||||||||||| |||||||| Sbjct: 944 attggctgataagcttgaaaa 964
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1012 attggctgataaacttg 1028 ||||||||||||||||| Sbjct: 1046 attggctgataaacttg 1062
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 236 attggctgataaacttg 252
Score = 34.2 bits (17), Expect = 0.65 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1207 attggctgataaacttg 1223 ||||||||||||||||| Sbjct: 299 attggctgataaacttg 315
Score = 32.2 bits (16), Expect = 2.6 Identities = 25/28 (89%) Strand = Plus / Plus
Query: 1012 attggctgataaacttgaaaaggaacgt 1039 ||||||||||||| | ||||| |||||| Sbjct: 479 attggctgataaattagaaaaagaacgt 506
Score = 32.2 bits (16), Expect = 2.6 Identities = 22/24 (91%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaaga 1098 ||||||||||||| | |||||||| Sbjct: 1007 attggctgataaattagaaaaaga 1030
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1085 aaacttgaaaaagaat 1100 |||||||||||||||| Sbjct: 852 aaacttgaaaaagaat 867
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 964 gttggctgataaactt 979 |||||||||||||||| Sbjct: 188 gttggctgataaactt 203
Score = 32.2 bits (16), Expect = 2.6 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 1103 caagaaaaagagttggctga 1122 ||||||||||| |||||||| Sbjct: 624 caagaaaaagaattggctga 643
Score = 32.2 bits (16), Expect = 2.6 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1208 ttggctgataaacttg 1223 |||||||||||||||| Sbjct: 189 ttggctgataaacttg 204
Score = 32.2 bits (16), Expect = 2.6 Identities = 22/24 (91%) Strand = Plus / Plus
Query: 1075 attggctgataaacttgaaaaaga 1098 ||||||||||||| | |||||||| Sbjct: 1100 attggctgataaattagaaaaaga 1123
Database: CSM Posted date: Jun 21, 2004 1:35 PM Number of letters in database: 8,075,542 Number of sequences in database: 8402 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,800 Number of Sequences: 8402 Number of extensions: 15800 Number of successful extensions: 2180 Number of sequences better than 10.0: 121 length of query: 1612 length of database: 8,075,542 effective HSP length: 16 effective length of query: 1596 effective length of database: 7,941,110 effective search space: 12674011560 effective search space used: 12674011560 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 16 (32.2 bits)
|
dna update |
2009. 4.12 |
Homology vs DNA |
|
protein update |
2009. 7.28 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
3 |
SS (DIR, S) |
0 |
SH (FL, L) |
5 |
SF (FL, S) |
2 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |