Contig-U16571-1 |
Contig ID |
Contig-U16571-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
4589 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1130 |
End point |
1368 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
43 |
Number of EST |
79 |
Link to clone list |
U16571 |
List of clone(s) |
est1=SHC842Z,1,796 est2=SHA658Z,90,827 est3=CFG815Z,92,829 est4=CHD524Z,99,764 est5=CHQ302Z,166,809 est6=CHF305Z,239,830 est7=CHS368Z,413,1192 est8=SHG481Z,483,1227 est9=SHE552Z,553,1225 est10=AHA263F,1228,1854 est11=AHF244F,1261,1883 est12=AHA839F,1263,1882 est13=CHF305F,1272,1870 est14=AFJ106F,1277,1907 est15=AFJ206F,1277,1891 est16=SHA658F,1282,1894 est17=VHK722F,1305,1896 est18=AHK272F,1321,1893 est19=AHK466F,1323,1893 est20=CHQ302F,1337,1807 est21=AHL678F,1351,1921 est22=CHS368F,1385,2023 est23=AHM541F,1413,2018 est24=AHP375F,1414,1834 est25=VHK230F,1435,2021 est26=AHI385F,1436,2018 est27=VHI225F,1486,1704 est28=VHJ256F,1494,2045 est29=CHC783Z,1524,1814 est30=AHD676F,1568,2225 est31=SHE552F,1575,2109 est32=AHM774F,1611,2226 est33=VHE256F,1611,2233 est34=VHJ583F,1649,2193 est35=SHI786F,1765,2356 est36=AHE636F,1771,2353 est37=VHE463F,1804,2461 est38=SHC842F,1809,2416 est39=VHJ274F,1823,2331 est40=SHG481F,1828,2462 est41=AFJ206Z,1927,2563 est42=AFJ106Z,1937,2563 est43=CFG815F,2374,3034 est44=VFC501F,2401,2967 est45=VFC503F,2401,2813 est46=CHD524F,2755,3368 est47=SHE845F,2767,2933 est48=AFC284F,2769,3309 est49=AFL417F,3117,3714 est50=AHA263Z,3372,4180 est51=VFA550F,3388,3911 est52=AHC690Z,3397,4182 est53=AHD676Z,3409,4165 est54=AHM541Z,3409,4182 est55=AHF244Z,3410,4182 est56=VHK230Z,3410,4184 est57=VHJ274Z,3451,4162 est58=AHI385Z,3453,4180 est59=AHE636Z,3455,4182 est60=AHK466Z,3455,4161 est61=AHL678Z,3455,4180 est62=VHI225Z,3461,4183 est63=VHJ256Z,3471,4183 est64=AFC284Z,3552,4179 est65=VHE256Z,3553,4184 est66=VHK722Z,3594,4183 est67=AHP375Z,3617,4183 est68=AHP820Z,3617,4182 est69=VFC501Z,3618,4181 est70=VSH120E,3758,4550 est71=AHA839Z,3819,4570 est72=AHK272Z,3843,4570 est73=AFL417Z,3844,4550 est74=AHM774Z,3866,4570 est75=VHE463Z,3906,4558 est76=VHJ583Z,3910,4572 est77=VFA550Z,3914,4550 est78=VSI147F,4032,4589 est79=VSI147Z,4047,4538
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.12 |
Homology vs DNA |
Query= Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Contig-U16571-1Q.Seq.d (4599 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AF049230) Dictyostelium discoideum LTR-retrotransposon Skip... 2646 0.0 3 (AF017040) Dictyostelium discoideum LTR-retrotransposon Skip... 2646 0.0 3 (FJ387222) Dictyostelium discoideum chromosome 3 centromere ... 2603 0.0 3 (FJ387224) Dictyostelium discoideum chromosome 2 C2 inner ce... 2583 0.0 3 (FJ387223) Dictyostelium discoideum chromosome 2 C2 outer ce... 2559 0.0 5 (BJ351940) Dictyostelium discoideum cDNA clone:dda45h06, 3' ... 1493 0.0 3 (BJ444442) Dictyostelium discoideum cDNA clone:ddv56k12, 3' ... 1461 0.0 1 (BJ355853) Dictyostelium discoideum cDNA clone:dda58n09, 3' ... 1461 0.0 1 (BJ355260) Dictyostelium discoideum cDNA clone:dda56a11, 3' ... 1390 0.0 2 (BJ350887) Dictyostelium discoideum cDNA clone:dda41g12, 3' ... 1390 0.0 2 (BJ350128) Dictyostelium discoideum cDNA clone:dda38g20, 3' ... 1390 0.0 2 (BJ349526) Dictyostelium discoideum cDNA clone:dda36c24, 3' ... 1390 0.0 2 (BJ348729) Dictyostelium discoideum cDNA clone:dda34l06, 3' ... 1390 0.0 2 (BJ347937) Dictyostelium discoideum cDNA clone:dda31m16, 3' ... 1390 0.0 2 (BJ352461) Dictyostelium discoideum cDNA clone:dda46g21, 3' ... 1388 0.0 1 (BJ408839) Dictyostelium discoideum cDNA clone:dds47j06, 3' ... 1386 0.0 2 (BJ404680) Dictyostelium discoideum cDNA clone:dds29d12, 3' ... 1386 0.0 3 (BJ352193) Dictyostelium discoideum cDNA clone:dda45p20, 3' ... 1380 0.0 1 (BJ442932) Dictyostelium discoideum cDNA clone:ddv51k08, 3' ... 1366 0.0 2 (BJ404381) Dictyostelium discoideum cDNA clone:dds28i09, 3' ... 1360 0.0 1 (BJ352371) Dictyostelium discoideum cDNA clone:dda46d17, 3' ... 1360 0.0 1 (BJ441601) Dictyostelium discoideum cDNA clone:ddv47a08, 3' ... 1358 0.0 1 (BJ373818) Dictyostelium discoideum cDNA clone:ddc4k04, 3' e... 1354 0.0 2 (BJ353822) Dictyostelium discoideum cDNA clone:dda51d18, 3' ... 1354 0.0 1 (BJ355670) Dictyostelium discoideum cDNA clone:dda57h24, 3' ... 1350 0.0 1 (BJ358130) Dictyostelium discoideum cDNA clone:dda65h23, 3' ... 1348 0.0 1 (BJ352826) Dictyostelium discoideum cDNA clone:dda48e04, 3' ... 1346 0.0 1 (BJ350571) Dictyostelium discoideum cDNA clone:dda40g10, 3' ... 1346 0.0 1 (BJ352772) Dictyostelium discoideum cDNA clone:dda47j21, 3' ... 1344 0.0 1 (BJ351093) Dictyostelium discoideum cDNA clone:dda42d03, 3' ... 1344 0.0 1 (BJ442382) Dictyostelium discoideum cDNA clone:ddv49o14, 3' ... 1340 0.0 1 (BJ403555) Dictyostelium discoideum cDNA clone:dds25c16, 3' ... 1338 0.0 1 (BJ444604) Dictyostelium discoideum cDNA clone:ddv56l21, 3' ... 1330 0.0 2 (BJ406691) Dictyostelium discoideum cDNA clone:dds36j06, 3' ... 1328 0.0 1 (BJ354828) Dictyostelium discoideum cDNA clone:dda54k20, 3' ... 1328 0.0 1 (BJ442400) Dictyostelium discoideum cDNA clone:ddv49c20, 3' ... 1318 0.0 2 (BJ353945) Dictyostelium discoideum cDNA clone:dda52b02, 3' ... 1312 0.0 1 (BJ353970) Dictyostelium discoideum cDNA clone:dda52h01, 3' ... 1304 0.0 1 (BJ359381) Dictyostelium discoideum cDNA clone:ddc14n04, 5' ... 1302 0.0 1 (BJ327096) Dictyostelium discoideum cDNA clone:dda19k01, 5' ... 1227 0.0 1 (BJ363942) Dictyostelium discoideum cDNA clone:ddc29o05, 5' ... 1217 0.0 1 (BJ330696) Dictyostelium discoideum cDNA clone:dda32n10, 5' ... 1213 0.0 1 (BJ333059) Dictyostelium discoideum cDNA clone:dda41g12, 5' ... 1211 0.0 1 (BJ439803) Dictyostelium discoideum cDNA clone:ddv41m13, 3' ... 1207 0.0 1 (BJ391872) Dictyostelium discoideum cDNA clone:dds25c16, 5' ... 1207 0.0 1 (BJ330470) Dictyostelium discoideum cDNA clone:dda31m16, 5' ... 1207 0.0 1 (BJ371573) Dictyostelium discoideum cDNA clone:ddc58h17, 5' ... 1197 0.0 1 (BJ327097) Dictyostelium discoideum cDNA clone:dda19k02, 5' ... 1195 0.0 1 (BJ402032) Dictyostelium discoideum cDNA clone:dds20a08, 3' ... 1178 0.0 1 (AU061463) Dictyostelium discoideum slug cDNA, clone SLE345. 1174 0.0 1 (BJ364550) Dictyostelium discoideum cDNA clone:ddc32j01, 5' ... 1172 0.0 1 (BJ439190) Dictyostelium discoideum cDNA clone:ddv39o14, 3' ... 1168 0.0 1 (AU061465) Dictyostelium discoideum slug cDNA, clone SLE355. 1166 0.0 1 (BJ341247) Dictyostelium discoideum cDNA clone:dda5g22, 3' e... 1162 0.0 1 (BJ424349) Dictyostelium discoideum cDNA clone:ddv52l05, 5' ... 1150 0.0 1 (BJ439216) Dictyostelium discoideum cDNA clone:ddv39c24, 3' ... 1146 0.0 3 (BJ376598) Dictyostelium discoideum cDNA clone:ddc29o05, 3' ... 1142 0.0 4 (BJ335783) Dictyostelium discoideum cDNA clone:dda51d18, 5' ... 1132 0.0 1 (BJ335829) Dictyostelium discoideum cDNA clone:dda51o18, 5' ... 1128 0.0 1 (BJ411827) Dictyostelium discoideum cDNA clone:ddv6a01, 5' e... 1124 0.0 1 (BJ336717) Dictyostelium discoideum cDNA clone:dda54k20, 5' ... 1124 0.0 1 (BJ443185) Dictyostelium discoideum cDNA clone:ddv52l05, 3' ... 1096 0.0 1 (BJ378560) Dictyostelium discoideum cDNA clone:ddc32j01, 3' ... 1094 0.0 1 (BJ334803) Dictyostelium discoideum cDNA clone:dda47j21, 5' ... 1090 0.0 1 (BJ424102) Dictyostelium discoideum cDNA clone:ddv51k08, 5' ... 1086 0.0 1 (BJ407462) Dictyostelium discoideum cDNA clone:dds38k16, 3' ... 1076 0.0 1 (BJ348282) Dictyostelium discoideum cDNA clone:dda32b21, 3' ... 1076 0.0 1 (BJ372796) Dictyostelium discoideum cDNA clone:ddc14n04, 3' ... 1066 0.0 2 (BJ445726) Dictyostelium discoideum cDNA clone:ddv60n12, 3' ... 1047 0.0 2 (BJ407862) Dictyostelium discoideum cDNA clone:dds43l20, 3' ... 1027 0.0 3 (BJ385155) Dictyostelium discoideum cDNA clone:ddc54d01, 3' ... 1019 0.0 3 (BJ394857) Dictyostelium discoideum cDNA clone:dds36b22, 5' ... 825 0.0 2 (BJ420560) Dictyostelium discoideum cDNA clone:ddv39n16, 5' ... 821 0.0 2 (BJ332353) Dictyostelium discoideum cDNA clone:dda38g20, 5' ... 821 0.0 2 (BJ389832) Dictyostelium discoideum cDNA clone:dds20a08, 5' ... 749 0.0 3 (BJ328117) Dictyostelium discoideum cDNA clone:dda23b06, 5' ... 527 0.0 4 (BJ442798) Dictyostelium discoideum cDNA clone:ddv51b04, 3' ... 1001 0.0 2 (BJ349002) Dictyostelium discoideum cDNA clone:dda35f01, 3' ... 751 0.0 4 (BJ355431) Dictyostelium discoideum cDNA clone:dda57f02, 3' ... 1072 0.0 1 (BJ420563) Dictyostelium discoideum cDNA clone:ddv39o14, 5' ... 737 0.0 2 (BJ324337) Dictyostelium discoideum cDNA clone:dda5g22, 5' e... 1065 0.0 1 (BJ337095) Dictyostelium discoideum cDNA clone:dda56a11, 5' ... 1041 0.0 2 (BJ386544) Dictyostelium discoideum cDNA clone:ddc58h17, 3' ... 729 0.0 4 (BJ392884) Dictyostelium discoideum cDNA clone:dds29d12, 5' ... 733 0.0 2 (BJ356987) Dictyostelium discoideum cDNA clone:dda62h06, 3' ... 1049 0.0 1 (BJ356898) Dictyostelium discoideum cDNA clone:dda61f19, 3' ... 1049 0.0 1 (BJ389972) Dictyostelium discoideum cDNA clone:dds20a20, 5' ... 702 0.0 3 (BJ430068) Dictyostelium discoideum cDNA clone:ddv6a01, 3' e... 1047 0.0 1 (BJ440427) Dictyostelium discoideum cDNA clone:ddv43l17, 3' ... 1043 0.0 1 (BJ386187) Dictyostelium discoideum cDNA clone:ddc57m08, 3' ... 704 0.0 4 (BJ344395) Dictyostelium discoideum cDNA clone:dda19k01, 3' ... 946 0.0 3 (BJ407191) Dictyostelium discoideum cDNA clone:dds37c20, 3' ... 664 0.0 5 (BJ344396) Dictyostelium discoideum cDNA clone:dda19k02, 3' ... 918 0.0 4 (BJ396237) Dictyostelium discoideum cDNA clone:dds41l21, 5' ... 607 0.0 2 (BJ348183) Dictyostelium discoideum cDNA clone:dda32n10, 3' ... 640 0.0 5 (BJ401892) Dictyostelium discoideum cDNA clone:dds19b20, 3' ... 668 0.0 4 (BJ337245) Dictyostelium discoideum cDNA clone:dda56d19, 5' ... 636 0.0 3 (BJ410965) Dictyostelium discoideum cDNA clone:ddv2c13, 5' e... 902 0.0 2 (BJ332913) Dictyostelium discoideum cDNA clone:dda40g10, 5' ... 601 0.0 2 (BJ437375) Dictyostelium discoideum cDNA clone:ddv34f06, 3' ... 993 0.0 1 (BJ406881) Dictyostelium discoideum cDNA clone:dds36b22, 3' ... 609 0.0 5 (BJ423579) Dictyostelium discoideum cDNA clone:ddv49o14, 5' ... 969 0.0 1 (BJ353873) Dictyostelium discoideum cDNA clone:dda51o18, 3' ... 559 0.0 6 (BJ358250) Dictyostelium discoideum cDNA clone:dda56d19, 3' ... 555 0.0 5 (BJ423908) Dictyostelium discoideum cDNA clone:ddv50e21, 5' ... 662 0.0 2 (BJ370405) Dictyostelium discoideum cDNA clone:ddc54d01, 5' ... 918 0.0 1 (BJ345220) Dictyostelium discoideum cDNA clone:dda23b06, 3' ... 585 0.0 4 (BJ403806) Dictyostelium discoideum cDNA clone:dds26h07, 3' ... 561 0.0 4 (BJ349346) Dictyostelium discoideum cDNA clone:dda36p01, 3' ... 549 0.0 5 (BJ409475) Dictyostelium discoideum cDNA clone:dds42a11, 3' ... 878 0.0 1 (BJ408586) Dictyostelium discoideum cDNA clone:dds46f10, 3' ... 492 0.0 3 (BJ394040) Dictyostelium discoideum cDNA clone:dds33g13, 5' ... 775 0.0 2 (BJ439186) Dictyostelium discoideum cDNA clone:ddv39n16, 3' ... 460 0.0 5 (BJ399372) Dictyostelium discoideum cDNA clone:dds5l18, 3' e... 494 0.0 4 (AU034801) Dictyostelium discoideum slug cDNA, clone SLE345. 466 0.0 3 (BJ442728) Dictyostelium discoideum cDNA clone:ddv50e21, 3' ... 470 0.0 5 (BJ389696) Dictyostelium discoideum cDNA clone:dds19b20, 5' ... 773 0.0 2 (BJ423595) Dictyostelium discoideum cDNA clone:ddv49c20, 5' ... 549 0.0 2 (BJ405940) Dictyostelium discoideum cDNA clone:dds33g13, 3' ... 470 0.0 4 (BJ411849) Dictyostelium discoideum cDNA clone:ddv6e01, 5' e... 799 0.0 1 (BJ338509) Dictyostelium discoideum cDNA clone:dda61f19, 5' ... 787 0.0 1 (BJ429148) Dictyostelium discoideum cDNA clone:ddv2c13, 3' e... 460 0.0 4 (BJ407829) Dictyostelium discoideum cDNA clone:dds43d20, 3' ... 704 0.0 2 (AU266936) Dictyostelium discoideum vegetative cDNA clone:VS... 749 0.0 1 (BJ409463) Dictyostelium discoideum cDNA clone:dds41l21, 3' ... 412 0.0 6 (BJ409400) Dictyostelium discoideum cDNA clone:dds41e15, 3' ... 420 0.0 5 (BJ349867) Dictyostelium discoideum cDNA clone:dda37l20, 3' ... 648 0.0 1 (AU266937) Dictyostelium discoideum vegetative cDNA clone:VS... 420 e-175 2 (BJ384600) Dictyostelium discoideum cDNA clone:ddc50e05, 3' ... 597 e-175 2 (BJ395373) Dictyostelium discoideum cDNA clone:dds38k16, 5' ... 620 e-172 1 (AU268225) Dictyostelium discoideum vegetative cDNA clone:VS... 420 e-171 4 (BJ396147) Dictyostelium discoideum cDNA clone:dds41e15, 5' ... 615 e-171 1 (U63593) Dictyostelium discoideum Tdd-4 transposable element... 609 e-169 1 (AU268226) Dictyostelium discoideum vegetative cDNA clone:VS... 420 e-162 2 (BJ409338) Dictyostelium discoideum cDNA clone:dds41a03, 3' ... 555 e-156 2 (BJ387890) Dictyostelium discoideum cDNA clone:dds5l18, 5' e... 293 e-152 3 (BJ409379) Dictyostelium discoideum cDNA clone:dds41f10, 3' ... 420 e-127 2 (BJ422847) Dictyostelium discoideum cDNA clone:ddv47a08, 5' ... 418 e-112 1 (AF049229) Dictyostelium discoideum LTR-retrotransposon Skip... 208 e-104 3 (AF017047) Dictyostelium discoideum LTR-retrotransposon Skip... 343 e-102 2 (AF017044) Dictyostelium discoideum LTR-retrotransposon Skip... 341 e-102 2 (BJ335906) Dictyostelium discoideum cDNA clone:dda52b02, 5' ... 363 4e-95 1 (AU034930) Dictyostelium discoideum slug cDNA, clone SLE355. 327 8e-95 3 (C94068) Dictyostelium discoideum slug cDNA, clone SSG367. 309 1e-92 2 (AF017046) Dictyostelium discoideum LTR-retrotransposon Skip... 307 9e-86 3 (BJ337707) Dictyostelium discoideum cDNA clone:dda58n09, 5' ... 319 5e-82 1 (AF017045) Dictyostelium discoideum LTR-retrotransposon Skip... 295 2e-81 3 (BJ393985) Dictyostelium discoideum cDNA clone:dds33j12, 5' ... 238 1e-77 2 (AF298624) Dictyostelium discoideum chromosome 2 repeat region. 299 5e-76 1 (AU034331) Dictyostelium discoideum slug cDNA, clone SLC703. 281 1e-70 1 (BJ408772) Dictyostelium discoideum cDNA clone:dds46l20, 3' ... 281 1e-70 1 (BJ445989) Dictyostelium discoideum cDNA clone:ddv61e08, 3' ... 278 2e-69 1 (BJ440638) Dictyostelium discoideum cDNA clone:ddv44e12, 3' ... 278 2e-69 1 (BJ409201) Dictyostelium discoideum cDNA clone:dds39m19, 3' ... 278 2e-69 1 (BJ408022) Dictyostelium discoideum cDNA clone:dds44n12, 3' ... 278 2e-69 1 (BJ352155) Dictyostelium discoideum cDNA clone:dda45g23, 3' ... 278 2e-69 1 (BJ405570) Dictyostelium discoideum cDNA clone:dds32l02, 3' ... 167 5e-52 3 (BJ352521) Dictyostelium discoideum cDNA clone:dda47d03, 3' ... 117 7e-47 4 (AF017043) Dictyostelium discoideum LTR-retrotransposon Skip... 163 5e-43 3 (AF017041) Dictyostelium discoideum LTR-retrotransposon Skip... 163 3e-41 3 (AU267490) Dictyostelium discoideum vegetative cDNA clone:VS... 151 6e-40 3 (AU267513) Dictyostelium discoideum vegetative cDNA clone:VS... 151 3e-38 3 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 151 3e-34 13 (AU267514) Dictyostelium discoideum vegetative cDNA clone:VS... 151 3e-34 3 (AU267491) Dictyostelium discoideum vegetative cDNA clone:VS... 151 3e-34 3 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 147 6e-34 2 (AF017042) Dictyostelium discoideum LTR-retrotransposon Skip... 123 2e-33 4 (BJ417958) Dictyostelium discoideum cDNA clone:ddv31m05, 5' ... 155 2e-32 1 (BJ329146) Dictyostelium discoideum cDNA clone:dda30p21, 5' ... 155 2e-32 1 (BJ395921) Dictyostelium discoideum cDNA clone:dds40n13, 5' ... 147 4e-30 1 (BJ386768) Dictyostelium discoideum cDNA clone:dds10g15, 5' ... 147 4e-30 1 (BJ369345) Dictyostelium discoideum cDNA clone:ddc50o06, 5' ... 147 4e-30 1 (BJ363459) Dictyostelium discoideum cDNA clone:ddc26b24, 5' ... 147 4e-30 1 (BJ362403) Dictyostelium discoideum cDNA clone:ddc21k13, 5' ... 147 4e-30 1 (BJ324024) Dictyostelium discoideum cDNA clone:dda4k09, 5' e... 147 4e-30 1 (BJ419431) Dictyostelium discoideum cDNA clone:ddv36h04, 5' ... 143 7e-29 1 (BJ418157) Dictyostelium discoideum cDNA clone:ddv31h22, 5' ... 143 7e-29 1 (BJ388461) Dictyostelium discoideum cDNA clone:dds9l16, 5' e... 143 7e-29 1 (BJ369199) Dictyostelium discoideum cDNA clone:ddc49n15, 5' ... 143 7e-29 1 (BJ364850) Dictyostelium discoideum cDNA clone:ddc33p05, 5' ... 143 7e-29 1 (BJ364357) Dictyostelium discoideum cDNA clone:ddc31n08, 5' ... 143 7e-29 1 (BJ361110) Dictyostelium discoideum cDNA clone:ddc9l19, 5' e... 143 7e-29 1 (BJ337873) Dictyostelium discoideum cDNA clone:dda59c12, 5' ... 143 7e-29 1 (BJ324315) Dictyostelium discoideum cDNA clone:dda5b19, 5' e... 143 7e-29 1 (BJ323571) Dictyostelium discoideum cDNA clone:dda11a09, 5' ... 143 7e-29 1 (BJ369055) Dictyostelium discoideum cDNA clone:ddc49k05, 5' ... 139 1e-27 1 (BJ424110) Dictyostelium discoideum cDNA clone:ddv51l12, 5' ... 137 4e-27 1 (BJ360103) Dictyostelium discoideum cDNA clone:ddc4d10, 5' e... 137 4e-27 1 (BJ335927) Dictyostelium discoideum cDNA clone:dda52h01, 5' ... 137 4e-27 1 (BJ417571) Dictyostelium discoideum cDNA clone:ddv28e06, 5' ... 135 2e-26 1 (BJ325662) Dictyostelium discoideum cDNA clone:dda1j20, 5' e... 135 2e-26 1 (BJ427449) Dictyostelium discoideum cDNA clone:ddv62p07, 5' ... 131 3e-25 1 (BJ415929) Dictyostelium discoideum cDNA clone:ddv24o05, 5' ... 131 3e-25 1 (BJ327181) Dictyostelium discoideum cDNA clone:dda19c13, 5' ... 131 3e-25 1 (BJ390200) Dictyostelium discoideum cDNA clone:dds21c14, 5' ... 127 4e-24 1 (BJ362439) Dictyostelium discoideum cDNA clone:ddc21d19, 5' ... 127 4e-24 1 (BJ329041) Dictyostelium discoideum cDNA clone:dda30f13, 5' ... 127 4e-24 1 (BJ324538) Dictyostelium discoideum cDNA clone:dda6e22, 5' e... 127 4e-24 1 (BJ338448) Dictyostelium discoideum cDNA clone:dda61f15, 5' ... 123 6e-23 1 (BJ420380) Dictyostelium discoideum cDNA clone:ddv39i04, 5' ... 121 3e-22 1 (BJ416097) Dictyostelium discoideum cDNA clone:ddv24o22, 5' ... 105 2e-17 1 (BJ334298) Dictyostelium discoideum cDNA clone:dda45g23, 5' ... 54 2e-04 2 (BJ362433) Dictyostelium discoideum cDNA clone:ddc21b23, 5' ... 54 2e-04 2 (BJ426846) Dictyostelium discoideum cDNA clone:ddv60n12, 5' ... 60 8e-04 1 (BJ394684) Dictyostelium discoideum cDNA clone:dds36j06, 5' ... 58 0.003 1 (BJ334854) Dictyostelium discoideum cDNA clone:dda48e04, 5' ... 56 0.013 1 (BJ424183) Dictyostelium discoideum cDNA clone:ddv51l15, 5' ... 36 0.040 2 (BJ391451) Dictyostelium discoideum cDNA clone:dds13o24, 5' ... 36 0.040 2 (BJ369303) Dictyostelium discoideum cDNA clone:ddc50e05, 5' ... 36 0.041 2 (CZ430618) OA_BBa0097K16.f OA_BBa Oryza alta genomic clone O... 54 0.050 1 (CZ143441) OA_BBa0040P13.f OA_BBa Oryza alta genomic clone O... 54 0.050 1 (FE095113) LV_GL_RA25D05f Litopenaeus vannamei gills cDNA li... 38 0.30 2 (FE095112) LV_GL_RA25B05r Litopenaeus vannamei gills cDNA li... 38 0.30 2 (ER838072) PPTEY93TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 0.37 4 (CU416310) Pleurobrachia pileus 5-PRIME EST from clone SQ0AA... 50 0.78 1 (DU831891) KBrS009D05R KBrS, Brassica rapa Sau3AI BAC librar... 42 2.3 2 (AM461229) Vitis vinifera contig VV78X101286.4, whole genome... 38 2.6 2 (AC220944) Pan troglodytes BAC clone CH251-656L19 from chrom... 48 3.1 1 (AC213006) Pan troglodytes BAC clone CH251-68I11 from chromo... 48 3.1 1 (AC073048) Homo sapiens BAC clone RP11-54E21 from 7, complet... 48 3.1 1 (AC080074) Homo sapiens chromosome 7 clone RP11-338F10, WORK... 48 3.1 1 (CZ997995) 187186 Tomato MboI BAC Library Solanum lycopersic... 48 3.1 1 (EG547369) RrLX2a28k02f1 1YR+II Rutilus rutilus cDNA clone 2... 48 3.1 1 (AC155664) Bos taurus clone CH240-31P11, WORKING DRAFT SEQUE... 42 3.5 6 (AC144212) Macaca mulatta clone CH250-270E1, *** SEQUENCING ... 40 5.2 2 (U49829) Caenorhabditis elegans cosmid F27D9, complete seque... 42 6.8 2 (CE124728) tigr-gss-dog-17000325947071 Dog Library Canis lup... 46 7.1 2 (BI251715) 602994217F1 NCI_CGAP_Mam5 Mus musculus cDNA clone... 36 7.5 2 (BV006911) ORS 28 Sunflower strain HA89 lambda ZAP express H... 36 7.6 2 (BZ479865) BONAQ70TF BO_1.6_2_KB_tot Brassica oleracea genom... 36 8.9 2
>(AF049230) Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds. Length = 6998
Score = 2646 bits (1335), Expect(3) = 0.0 Identities = 1338/1339 (99%) Strand = Plus / Plus
Query: 2058 cactttctgatgaatcactcaaagaattcaataatctaaagaaagagtttgaaggtgaaa 2117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4314 cactttctgatgaatcactcaaagaattcaataatctaaagaaagagtttgaaggtgaaa 4373
Query: 2118 atattgtcgctattccaattgaacaagataactccataccaatagatatcgaaaaggtta 2177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4374 atattgtcgctattccaattgaacaagataactccataccaatagatatcgaaaaggtta 4433
Query: 2178 aagcatcaacagacatgccaatccattcagataataataatctaaacaatggtagttttc 2237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4434 aagcatcaacagacatgccaatccattcagataataataatctaaacaatggtagttttc 4493
Query: 2238 acttgtattgtgatgttagtgataaagcattatcaggtgtattatatcaaattcaaggta 2297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4494 acttgtattgtgatgttagtgataaagcattatcaggtgtattatatcaaattcaaggta 4553
Query: 2298 ataaattcaaagtcatttggtttcatagtagaaaacttactgatactcaaaagaggtaca 2357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 4554 ataaattcaaagtcatttggtttcattgtagaaaacttactgatactcaaaagaggtaca 4613
Query: 2358 gcataggtgatagagagttcctttcaatcattgattctctaaagaagtttcaacatttat 2417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4614 gcataggtgatagagagttcctttcaatcattgattctctaaagaagtttcaacatttat 4673
Query: 2418 taattggtaaaaaggtttcaatctacactgatcaccaaaatcttacatatattatcaata 2477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4674 taattggtaaaaaggtttcaatctacactgatcaccaaaatcttacatatattatcaata 4733
Query: 2478 agtcaaacgataaaccgttcacaaagagacaagataattatatgaaatatattaaagaat 2537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4734 agtcaaacgataaaccgttcacaaagagacaagataattatatgaaatatattaaagaat 4793
Query: 2538 ttgattatgaattaagacatataagtggtaaaaagaatggtatagctgatttcttatctc 2597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4794 ttgattatgaattaagacatataagtggtaaaaagaatggtatagctgatttcttatctc 4853
Query: 2598 gtaaatatgataatttccaatgggatgaatcgtttttaaataaaattaaggaagaacaaa 2657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4854 gtaaatatgataatttccaatgggatgaatcgtttttaaataaaattaaggaagaacaaa 4913
Query: 2658 tcaattctcaatggctattagagatgaaaaagaatccaaatttatgcattgaagaaatta 2717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4914 tcaattctcaatggctattagagatgaaaaagaatccaaatttatgcattgaagaaatta 4973
Query: 2718 atgatatctgttaccttagtgaagatgggttcaagaaattaatcatcatagataaagaaa 2777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4974 atgatatctgttaccttagtgaagatgggttcaagaaattaatcatcatagataaagaaa 5033
Query: 2778 ctattcataccgtcattagagaatatcacgataccaaatatagtggtcatcacgctttag 2837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5034 ctattcataccgtcattagagaatatcacgataccaaatatagtggtcatcacgctttag 5093
Query: 2838 atatcacatacaataatataagacaagattactatttcaaagaaatgttttctattatca 2897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5094 atatcacatacaataatataagacaagattactatttcaaagaaatgttttctattatca 5153
Query: 2898 agaggtacataaagtcttgtgcaacatgtcaattgaacattaaccgtaaagataatggta 2957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5154 agaggtacataaagtcttgtgcaacatgtcaattgaacattaaccgtaaagataatggta 5213
Query: 2958 tactccaaagtttagaaattccctttgaagtttggagagatatatcaatcgatttcttat 3017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5214 tactccaaagtttagaaattccctttgaagtttggagagatatatcaatcgatttcttat 5273
Query: 3018 cgctaccaaaaacaatgtatgcaataaacggatttacagttgaagtcgatcaagtttgtg 3077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5274 cgctaccaaaaacaatgtatgcaataaacggatttacagttgaagtcgatcaagtttgtg 5333
Query: 3078 tcattgtttgtagattatctaaaatggttcatatagttccatgtcataagacaatagatg 3137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5334 tcattgtttgtagattatctaaaatggttcatatagttccatgtcataagacaatagatg 5393
Query: 3138 cccaacatactgctcaattattgttgaatcatgtgttcagactccatggttatccaagaa 3197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5394 cccaacatactgctcaattattgttgaatcatgtgttcagactccatggttatccaagaa 5453
Query: 3198 caatcgtctccgatagagatccaagattcctttcagaaatatgggagagatgggcaaaga 3257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5454 caatcgtctccgatagagatccaagattcctttcagaaatatgggagagatgggcaaaga 5513
Query: 3258 cgatggattctaaactcaagatgactgtggcacacagagcacaagctgatggtcaaactg 3317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5514 cgatggattctaaactcaagatgactgtggcacacagagcacaagctgatggtcaaactg 5573
Query: 3318 aaagaatgaatagagaaattattagaatattaactaaagcctcaacagagtatggggaga 3377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5574 aaagaatgaatagagaaattattagaatattaactaaagcctcaacagagtatggggaga 5633
Query: 3378 attggtcagatatcattcc 3396 ||||||||||||||||||| Sbjct: 5634 attggtcagatatcattcc 5652
Score = 1473 bits (743), Expect = 0.0 Identities = 755/759 (99%) Strand = Plus / Plus
Query: 1238 atcataataaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaaca 1297 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3494 atcatattaaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaaca 3553
Query: 1298 gatgatcataagagacatgtcgaagaaatggttatcaaatttatagatttaggtattatc 1357 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3554 gatgatcataagagacatgtcgaagaaatggttctcaaatttatagatttaggtattatc 3613
Query: 1358 aaaagatcagaatcaaattactcatctccaatcatgttattaaagaagagagattcatgg 1417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3614 aaaagatcagaatcaaattactcatctccaatcatgttattaaagaagagagattcatgg 3673
Query: 1418 cgtgtagtccacgactatcgtcaactaaataaagtcactgttagagacgatcatccattc 1477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3674 cgtgtagtccacgactatcgtcaactaaataaagtcactgttagagacgatcatccattc 3733
Query: 1478 actccggttgatagtcttttaaatcaatgtaaagattcaaagcttttctcaaagtttgac 1537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3734 actccggttgatagtcttttaaatcaatgtaaagattcaaagcttttctcaaagtttgac 3793
Query: 1538 atgattatgggttatttccaagtgttaattaatccagaacacgcaaagtacaccgctttc 1597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3794 atgattatgggttatttccaagtgttaattaatccagaacacgcaaagtacaccgctttc 3853
Query: 1598 attacacatattggtaaatttgaatatactagaatgccacaaggtttagtcaactctcca 1657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3854 attacacatattggtaaatttgaatatactagaatgccacaaggtttagtcaactctcca 3913
Query: 1658 tccacattcgccagattgatggtcgaaatatttggaaaaatcaaaagtttattacaatac 1717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3914 tccacattcgccagattgatggtcgaaatatttggaaaaatcaaaagtttattacaatac 3973
Query: 1718 tttgatgatcttttggttcattcaaaactcgactacatggtacatttcattgaaataatt 1777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3974 tttgatgatcttttggttcattcaaaactcgactacatggtacatttcattgaaatcatt 4033
Query: 1778 agaatgcttctatattgtagaaagtacctattattcatttcaagagaaaagagtgaaatg 1837 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4034 agaatgcttctatattgtagaaagtacctattattcatttcacgagaaaagagtgaaatg 4093
Query: 1838 ttaaagactgaagtagatttccttggtttccacattcataaagatggtatatctccaaga 1897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4094 ttaaagactgaagtagatttccttggtttccacattcataaagatggtatatctccaaga 4153
Query: 1898 gctgcaaaggttagagctatctctgagttacctgaaccaagaaacgccaaagaagctgaa 1957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4154 gctgcaaaggttagagctatctctgagttacctgaaccaagaaacgccaaagaagctgaa 4213
Query: 1958 gctgcattaggtctttttggattcttcaggagacacatt 1996 ||||||||||||||||||||||||||||||||||||||| Sbjct: 4214 gctgcattaggtctttttggattcttcaggagacacatt 4252
Score = 1350 bits (681), Expect(3) = 0.0 Identities = 696/701 (99%) Strand = Plus / Plus
Query: 3456 ccaaatcgtatatggattcaatccaccaactcccgttaatcatttcaattcattaacaaa 3515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5710 ccaaatcgtatatggattcaatccaccaactcccgttaatcatttcaattcattaacaaa 5769
Query: 3516 gactcgtataccaatgagcaacatcaaaaagattgtccgtgataatatactagatgctca 3575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5770 gactcgtataccaatgagcaacatcaaaaagattgtccgtgataatatactagatgctca 5829
Query: 3576 aatcaatgctcaaaagtattacaaccgaggtcgtggtgatgttatcttcgtagtcggaga 3635 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5830 aatcaatgctccaaagtattacaaccgaggtcgtggtgatgttatcttcgtagtcggaga 5889
Query: 3636 aaaggtgatggttaaaagaaaattcttccaaactaatctttcaaaagatctaatctctca 3695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5890 aaaggtgatggttaaaagaaaattcttccaaactaatctttcaaaagatctaatctctca 5949
Query: 3696 caaacttgaatccaagaattgtggaccattcataatcactgccgttcatggtaataatgt 3755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5950 caaacttgaatccaagaattgtggaccattcataatcactgccgttcatggtaataatgt 6009
Query: 3756 aacactcgatttagtaggttatccaaagaaacacaatgtgttcaacaaggatcaaatcgt 3815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6010 aacactcgatttagtaggttatccaaagaaacacaatgtgttcaacaaggatcaaatcgt 6069
Query: 3816 aaaactatacgaggacagtgagtggttaagagaagagatatcgatgcccgaacctgagga 3875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 aaaactatacgaggacagtgagtggttaagagaagagatatcgatgcccgaacctgagga 6129
Query: 3876 gatggacgaagcaagttacgaagttgaaagtattctcaatcacgataaagtcaaaaagat 3935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6130 gatggacgaagcaagttacgaagttgaaagtattctcaatcacgataaagtcaaaaagat 6189
Query: 3936 gtacctagtgaagttcaaaggttacccagaacctgaatggatcaaagaagtcgatacaga 3995 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 6190 gtacctagtgaagttcaaaggttacccagaacctgaatggatcagagaagtcgatacaga 6249
Query: 3996 ctgtgaagagttagtcagagagtattggaataacgtgcagaagaaacaattgaactcaag 4055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6250 ctgtgaagagttagtcagagagtattggaataacgtgcagaagaaacaattgaactcaag 6309
Query: 4056 aagagaaagagagaatgtaactacagaagccgttgagccaattgtgtcacctccactctc 4115 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 6310 aagagaaagagagaatgtaactacagaagcagttgagccaattgtgtcacctccactctc 6369
Query: 4116 ccaagaagttcaaagttctcaaacattgcaaccaattactc 4156 | |||||||||||||||||||||||||||||||||||||| Sbjct: 6370 cacagaagttcaaagttctcaaacattgcaaccaattactc 6410
Score = 557 bits (281), Expect(9) = 0.0 Identities = 284/285 (99%) Strand = Plus / Plus
Query: 402 tttagtaggttatccaaagaaacacaatgtgttcaacaaggatcaaatcgtaaaactata 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6019 tttagtaggttatccaaagaaacacaatgtgttcaacaaggatcaaatcgtaaaactata 6078
Query: 462 cgaggacagtgagtggttaagagaagagatatcgatgcccgaacctgaggagatggacga 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6079 cgaggacagtgagtggttaagagaagagatatcgatgcccgaacctgaggagatggacga 6138
Query: 522 agcaagttacgaagttgaaagtattctcaatcacgataaagtcaaaaagatgtacctagt 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6139 agcaagttacgaagttgaaagtattctcaatcacgataaagtcaaaaagatgtacctagt 6198
Query: 582 gaagttcaaaggttacccagaacctgaatggatcaaagaagtcgatacagactgtgaaga 641 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 6199 gaagttcaaaggttacccagaacctgaatggatcagagaagtcgatacagactgtgaaga 6258
Query: 642 gttagtcagagagtattggaataacgtgcagaagaaacaattgaa 686 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6259 gttagtcagagagtattggaataacgtgcagaagaaacaattgaa 6303
Score = 258 bits (130), Expect(9) = 0.0 Identities = 130/130 (100%) Strand = Plus / Plus
Query: 271 aaaaggtgatggttaaaagaaaattcttccaaactaatctttcaaaagatctaatctctc 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5889 aaaaggtgatggttaaaagaaaattcttccaaactaatctttcaaaagatctaatctctc 5948
Query: 331 acaaacttgaatccaagaattgtggaccattcataatcactgccgttcatggtaataatg 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5949 acaaacttgaatccaagaattgtggaccattcataatcactgccgttcatggtaataatg 6008
Query: 391 taacactcga 400 |||||||||| Sbjct: 6009 taacactcga 6018
Score = 200 bits (101), Expect(9) = 0.0 Identities = 104/105 (99%) Strand = Plus / Plus
Query: 1 tatggggagaattggtcagatatcattccacttattgaatttgcaatgaactcatcaatg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5624 tatggggagaattggtcagatatcattccacttattgaatttgcaatgaactcatcaatg 5683
Query: 61 agcaagtctacaaagatgtcaccattccaaatcgtttatggattc 105 ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 5684 agcaagtctacaaagatgtcaccattccaaatcgtatatggattc 5728
Score = 143 bits (72), Expect(9) = 0.0 Identities = 72/72 (100%) Strand = Plus / Plus
Query: 106 caatccaccaactcccgttaatcatttcaattcattaacaaagactcgtataccaatgag 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5728 caatccaccaactcccgttaatcatttcaattcattaacaaagactcgtataccaatgag 5787
Query: 166 caacatcaaaaa 177 |||||||||||| Sbjct: 5788 caacatcaaaaa 5799
Score = 121 bits (61), Expect(3) = 0.0 Identities = 61/61 (100%) Strand = Plus / Plus
Query: 3396 ccacttattgaatttgcaatgaactcatcaatgagcaagtctacaaagatgtcaccattc 3455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5651 ccacttattgaatttgcaatgaactcatcaatgagcaagtctacaaagatgtcaccattc 5710
Query: 3456 c 3456 | Sbjct: 5711 c 5711
Score = 121 bits (61), Expect(9) = 0.0 Identities = 64/65 (98%) Strand = Plus / Plus
Query: 688 ctcaagaagagaaagagagaatgtaactacagaagccgttgagccaattgtgtcacctcc 747 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 6304 ctcaagaagagaaagagagaatgtaactacagaagcagttgagccaattgtgtcacctcc 6363
Query: 748 actct 752 ||||| Sbjct: 6364 actct 6368
Score = 95.6 bits (48), Expect(9) = 0.0 Identities = 51/52 (98%) Strand = Plus / Plus
Query: 188 gtgataatatactagatgctcaaatcaatgctcaaaagtattacaaccgagg 239 ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 5808 gtgataatatactagatgctcaaatcaatgctccaaagtattacaaccgagg 5859
Score = 75.8 bits (38), Expect(9) = 0.0 Identities = 38/38 (100%) Strand = Plus / Plus
Query: 758 agaagttcaaagttctcaaacattgcaaccaattactc 795 |||||||||||||||||||||||||||||||||||||| Sbjct: 6373 agaagttcaaagttctcaaacattgcaaccaattactc 6410
Score = 69.9 bits (35), Expect(9) = 0.0 Identities = 35/35 (100%) Strand = Plus / Plus
Query: 239 ggtcgtggtgatgttatcttcgtagtcggagaaaa 273 ||||||||||||||||||||||||||||||||||| Sbjct: 5858 ggtcgtggtgatgttatcttcgtagtcggagaaaa 5892
Score = 28.2 bits (14), Expect(9) = 0.0 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 174 aaaaagattgtccg 187 |||||||||||||| Sbjct: 5795 aaaaagattgtccg 5808
Score = 396 bits (200), Expect(5) = e-151 Identities = 209/212 (98%) Strand = Plus / Plus
Query: 4225 acttcaagtgaggatgatgaacttgatcttagtttacaaattaaaacaactagatcagga 4284 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 6479 acttcaagtgatgatgatgaacatgatcttagtttacaaattaaaacaactagatcagga 6538
Query: 4285 agaaaagttacacccaagagtttatagtccacctctgagccatagctagcctaaagaagg 4344 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 6539 agaaaagttacacccaagagtttatagtccacctctgagccatagctggcctaaagaagg 6598
Query: 4345 aaggggaaggtgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaa 4404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6599 aaggggaaggtgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaa 6658
Query: 4405 cgtaacaaattcgcgcatctccatgtaaaaat 4436 |||||||||||||||||||||||||||||||| Sbjct: 6659 cgtaacaaattcgcgcatctccatgtaaaaat 6690
Score = 163 bits (82), Expect(5) = e-151 Identities = 82/82 (100%) Strand = Plus / Plus
Query: 994 tgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaacgtaacaaat 1053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaacgtaacaaat 60
Query: 1054 tcgcgcatctccatgtaaaaat 1075 |||||||||||||||||||||| Sbjct: 61 tcgcgcatctccatgtaaaaat 82
Score = 42.1 bits (21), Expect(5) = e-151 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 4569 tttcataacgcccttactttt 4589 ||||||||||||||||||||| Sbjct: 6823 tttcataacgcccttactttt 6843
Score = 38.2 bits (19), Expect(5) = e-151 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1201 ctgatttttcggtttagtt 1219 ||||||||||||||||||| Sbjct: 197 ctgatttttcggtttagtt 215
Score = 30.2 bits (15), Expect(5) = e-151 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 4557 ttttcggtttagttt 4571 ||||||||||||||| Sbjct: 6810 ttttcggtttagttt 6824
Score = 396 bits (200), Expect(2) = e-107 Identities = 209/212 (98%) Strand = Plus / Plus
Query: 864 acttcaagtgaggatgatgaacttgatcttagtttacaaattaaaacaactagatcagga 923 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 6479 acttcaagtgatgatgatgaacatgatcttagtttacaaattaaaacaactagatcagga 6538
Query: 924 agaaaagttacacccaagagtttatagtccacctctgagccatagctagcctaaagaagg 983 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 6539 agaaaagttacacccaagagtttatagtccacctctgagccatagctggcctaaagaagg 6598
Query: 984 aaggggaaggtgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaa 1043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6599 aaggggaaggtgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaa 6658
Query: 1044 cgtaacaaattcgcgcatctccatgtaaaaat 1075 |||||||||||||||||||||||||||||||| Sbjct: 6659 cgtaacaaattcgcgcatctccatgtaaaaat 6690
Score = 38.2 bits (19), Expect(2) = e-107 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 1201 ctgatttttcggtttagtt 1219 ||||||||||||||||||| Sbjct: 6805 ctgatttttcggtttagtt 6823
Score = 163 bits (82), Expect(3) = 2e-38 Identities = 82/82 (100%) Strand = Plus / Plus
Query: 4355 tgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaacgtaacaaat 4414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgttagagactcaaaactaaattaatttaaagttagtatgagctcaacaacgtaacaaat 60
Query: 4415 tcgcgcatctccatgtaaaaat 4436 |||||||||||||||||||||| Sbjct: 61 tcgcgcatctccatgtaaaaat 82
Score = 42.1 bits (21), Expect(3) = 2e-38 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 4569 tttcataacgcccttactttt 4589 ||||||||||||||||||||| Sbjct: 215 tttcataacgcccttactttt 235
Score = 30.2 bits (15), Expect(3) = 2e-38 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 4557 ttttcggtttagttt 4571 ||||||||||||||| Sbjct: 202 ttttcggtttagttt 216
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 4,915,864,450 Number of extensions: 290923673 Number of successful extensions: 23161331 Number of sequences better than 10.0: 231 Length of query: 4599 Length of database: 101,790,757,118 Length adjustment: 25 Effective length of query: 4574 Effective length of database: 99,238,119,368 Effective search space: 453915157989232 Effective search space used: 453915157989232 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.28 |
Homology vs Protein |
Query= Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Contig-U16571-1Q.Seq.d (4599 letters)
Database: nrp_A 3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro... 1459 0.0 AY198186_2(AY198186|pid:none) Saccharomyces paradoxus Ty3-like r... 327 2e-93 (Q99315) RecName: Full=Transposon Ty3-G Gag-Pol polyprotein; Alt... 322 5e-92 M34549_2(M34549|pid:none) Saccharomyces cerevisiae tRNA-Cys gene... 322 5e-92 (Q7LHG5) RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; Alt... 323 2e-91 M23367_2(M23367|pid:none) Saccharomyces cerevisiae TY3-2 complet... 323 2e-91 AF541963_5(AF541963|pid:none) Glycine max cv Williams 82 BAC clo... 339 6e-91 CR382131_591(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 333 3e-89 AJ746250_2(AJ746250|pid:none) Yarrowia lipolytica retrotransposo... 333 3e-89 AB430324_1(AB430324|pid:none) Lotus japonicus Ty3-gypsy LORE2B2 ... 318 2e-88 AB430326_1(AB430326|pid:none) Lotus japonicus Ty3-gypsy LORE2B4 ... 316 2e-88 EU522675_1(EU522675|pid:none) Ananas comosus clone pC17Dea2 retr... 329 5e-88 AB430329_1(AB430329|pid:none) Lotus japonicus Ty3-gypsy LORE2B7 ... 316 9e-88 AB430321_1(AB430321|pid:none) Lotus japonicus Ty3-gypsy LORE2B r... 316 9e-88 AF448416_9(AF448416|pid:none) Zea mays B73 chromosome 9S bz geno... 313 1e-87 AF061282_3(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin clu... 327 3e-87 AB458444_61(AB458444|pid:none) Oryza sativa Indica Group Kasalat... 327 3e-87 CR855171_12(CR855171|pid:none) Oryza sativa (indica cultivar-gro... 310 3e-87 AL606459_9(AL606459|pid:none) Oryza sativa genomic DNA, chromoso... 310 3e-87 AC022352_18(AC022352|pid:none) Genomic Sequence for Oryza sativa... 326 6e-87 CR855068_4(CR855068|pid:none) Oryza sativa genomic DNA, chromoso... 324 2e-86 AC079634_1(AC079634|pid:none) Genomic Sequence for Oryza sativa,... 324 2e-86 CR855217_8(CR855217|pid:none) Oryza sativa (indica cultivar-grou... 323 3e-86 AC137616_13(AC137616|pid:none) Oryza sativa (japonica cultivar-g... 323 3e-86 AL662958_8(AL662958|pid:none) Oryza sativa genomic DNA, chromoso... 323 3e-86 Z46728_15(Z46728|pid:none) S.cerevisiae chromosome IX cosmid 9910. 323 4e-86 AF061282_20(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin cl... 312 5e-86 AB028236_3(AB028236|pid:none) Tricholoma matsutake LTR retroelem... 293 6e-86 AL606682_9(AL606682|pid:none) Oryza sativa genomic DNA, chromoso... 305 8e-86 AC135916_2(AC135916|pid:none) Genomic sequence for Oryza sativa,... 322 1e-85 AC124142_14(AC124142|pid:none) Oryza sativa (japonica cultivar-g... 321 2e-85 AP008213_862(AP008213|pid:none) Oryza sativa (japonica cultivar-... 321 2e-85 AC150244_6(AC150244|pid:none) Medicago truncatula chromosome 7 c... 320 3e-85 AC134044_16(AC134044|pid:none) Oryza sativa (japonica cultivar-g... 320 3e-85 CR855080_1(CR855080|pid:none) Oryza sativa (indica cultivar-grou... 320 4e-85 AC097278_23(AC097278|pid:none) Oryza sativa chromosome 10 BAC OS... 320 4e-85 AL606997_6(AL606997|pid:none) Oryza sativa genomic DNA, chromoso... 319 5e-85 AM481999_2(AM481999|pid:none) Vitis vinifera contig VV78X241394.... 319 5e-85 AC135498_4(AC135498|pid:none) Oryza sativa (japonica cultivar-gr... 319 5e-85 AB458444_60(AB458444|pid:none) Oryza sativa Indica Group Kasalat... 319 7e-85 AC093568_17(AC093568|pid:none) Oryza sativa chromosome 10 clone ... 319 7e-85 AY129008_1(AY129008|pid:none) Zea mays CRM centromeric retrotran... 319 7e-85 CR855060_2(CR855060|pid:none) Oryza sativa genomic DNA, chromoso... 319 7e-85 AL662955_6(AL662955|pid:none) Oryza sativa genomic DNA, chromoso... 318 9e-85 AB033235_1(AB033235|pid:none) Oryza sativa Indica Group gypsy-ty... 318 9e-85 AL662955_10(AL662955|pid:none) Oryza sativa genomic DNA, chromos... 318 9e-85 CR855060_3(CR855060|pid:none) Oryza sativa genomic DNA, chromoso... 318 9e-85 AC093017_8(AC093017|pid:none) Oryza sativa (japonica cultivar-gr... 318 9e-85 AB458444_104(AB458444|pid:none) Oryza sativa Indica Group Kasala... 318 1e-84 AC097446_24(AC097446|pid:none) Oryza sativa (japonica cultivar-g... 318 1e-84 AC090486_5(AC090486|pid:none) Genomic sequence for Oryza sativa... 318 1e-84 AC121365_11(AC121365|pid:none) Oryza sativa (japonica cultivar-g... 318 1e-84 AC130611_13(AC130611|pid:none) Oryza sativa (japonica cultivar-g... 318 1e-84 AL731578_9(AL731578|pid:none) Oryza sativa genomic DNA, chromoso... 318 1e-84 CR855017_1(CR855017|pid:none) Oryza sativa (indica cultivar-grou... 318 2e-84 AL731643_28(AL731643|pid:none) Oryza sativa genomic DNA, chromos... 318 2e-84 AY360388_13(AY360388|pid:none) Oryza sativa (japonica cultivar-g... 318 2e-84 CR855225_5(CR855225|pid:none) Oryza sativa genomic DNA, chromoso... 317 2e-84 CR855056_5(CR855056|pid:none) Oryza sativa genomic DNA, chromoso... 317 2e-84 AB458444_6(AB458444|pid:none) Oryza sativa Indica Group Kasalath... 317 2e-84 AL731581_16(AL731581|pid:none) Oryza sativa genomic DNA, chromos... 317 2e-84 AY360387_1(AY360387|pid:none) Oryza sativa (japonica cultivar-gr... 317 3e-84 AC091749_5(AC091749|pid:none) Oryza sativa chromosome 10 BAC OSJ... 317 3e-84 AY661558_1(AY661558|pid:none) Hordeum vulgare subsp. vulgare eIF... 303 3e-84 CR855110_9(CR855110|pid:none) Oryza sativa genomic DNA, chromoso... 317 3e-84 AC145272_6(AC145272|pid:none) Oryza sativa (japonica cultivar-gr... 317 3e-84 AC051624_1(AC051624|pid:none) Genomic Sequence for Oryza sativa,... 317 3e-84 AC132484_16(AC132484|pid:none) Oryza sativa (japonica cultivar-g... 306 3e-84 CR855077_3(CR855077|pid:none) Oryza sativa (indica cultivar-grou... 316 4e-84 AL662949_3(AL662949|pid:none) Oryza sativa genomic DNA, chromoso... 316 4e-84 AL731595_9(AL731595|pid:none) Oryza sativa genomic DNA, chromoso... 316 4e-84 CR855080_5(CR855080|pid:none) Oryza sativa (indica cultivar-grou... 316 4e-84 AC090486_12(AC090486|pid:none) Genomic sequence for Oryza sativ... 316 4e-84 AC051624_3(AC051624|pid:none) Genomic Sequence for Oryza sativa,... 300 5e-84 AC091735_33(AC091735|pid:none) Genomic sequence for Oryza sativa... 316 6e-84 AY360390_15(AY360390|pid:none) Oryza sativa (japonica cultivar-g... 316 6e-84 CR855153_2(CR855153|pid:none) Oryza sativa genomic DNA, chromoso... 315 8e-84 AC077693_20(AC077693|pid:none) Oryza sativa chromosome 10 BAC OS... 315 8e-84 AC133004_15(AC133004|pid:none) Oryza sativa (japonica cultivar-g... 315 8e-84 AC051624_18(AC051624|pid:none) Genomic Sequence for Oryza sativa... 315 8e-84 AC150788_10(AC150788|pid:none) Oryza sativa (japonica cultivar-g... 315 1e-83 AC150788_9(AC150788|pid:none) Oryza sativa (japonica cultivar-gr... 315 1e-83 AL662951_12(AL662951|pid:none) Oryza sativa genomic DNA, chromos... 315 1e-83 AC097446_13(AC097446|pid:none) Oryza sativa (japonica cultivar-g... 314 2e-83 AL662980_12(AL662980|pid:none) Oryza sativa genomic DNA, chromos... 314 2e-83 AL606691_17(AL606691|pid:none) Oryza sativa genomic DNA, chromos... 314 2e-83 CR855061_4(CR855061|pid:none) Oryza sativa genomic DNA, chromoso... 304 2e-83 CR855028_5(CR855028|pid:none) Oryza sativa genomic DNA, chromoso... 313 3e-83 CR855080_6(CR855080|pid:none) Oryza sativa (indica cultivar-grou... 313 4e-83 AC145273_1(AC145273|pid:none) Oryza sativa (japonica cultivar-gr... 305 4e-83 CR855075_6(CR855075|pid:none) Oryza sativa (indica cultivar-grou... 313 5e-83 AC091732_12(AC091732|pid:none) Oryza sativa (japonica cultivar-g... 313 5e-83 CR855237_3(CR855237|pid:none) Oryza sativa genomic DNA, chromoso... 313 5e-83 AC120985_4(AC120985|pid:none) Oryza sativa (japonica cultivar-gr... 312 6e-83 AL731618_12(AL731618|pid:none) Oryza sativa genomic DNA, chromos... 312 6e-83 AC074282_11(AC074282|pid:none) Oryza sativa (japonica cultivar-g... 312 6e-83 AC137610_10(AC137610|pid:none) Oryza sativa (japonica cultivar-g... 312 8e-83 AC145810_7(AC145810|pid:none) Oryza sativa (japonica cultivar-gr... 312 8e-83 AC147811_19(AC147811|pid:none) Oryza sativa (japonica cultivar-g... 303 1e-82 AL731603_8(AL731603|pid:none) Oryza sativa genomic DNA, chromoso... 311 1e-82 AC119148_2(AC119148|pid:none) Oryza sativa (japonica cultivar-gr... 301 1e-82 AC146338_6(AC146338|pid:none) Oryza sativa (japonica cultivar-gr... 301 2e-82 AL731625_7(AL731625|pid:none) Oryza sativa (japonica cultivar-gr... 302 2e-82 CR855026_1(CR855026|pid:none) Oryza sativa (indica cultivar-grou... 300 2e-82 AC120536_10(AC120536|pid:none) Oryza sativa (japonica cultivar-g... 311 2e-82 CR855062_2(CR855062|pid:none) Oryza sativa genomic DNA, chromoso... 311 2e-82 AC104322_6(AC104322|pid:none) Oryza sativa chromosome 10 BAC OSJ... 302 2e-82 AC135916_12(AC135916|pid:none) Genomic sequence for Oryza sativa... 302 2e-82 AL662974_8(AL662974|pid:none) Oryza sativa genomic DNA, chromoso... 310 2e-82 AP007151_1375(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 310 2e-82 AL662941_9(AL662941|pid:none) Oryza sativa genomic DNA, chromoso... 310 2e-82 AC131968_8(AC131968|pid:none) Oryza sativa (japonica cultivar-gr... 302 3e-82 AL662953_1(AL662953|pid:none) Oryza sativa genomic DNA, chromoso... 298 3e-82 AC137613_7(AC137613|pid:none) Oryza sativa (japonica cultivar-gr... 299 4e-82 AC131966_13(AC131966|pid:none) Oryza sativa (japonica cultivar-g... 303 4e-82 AY830091_2(AY830091|pid:none) Phytophthora infestans gypsy-like ... 310 4e-82 CR855079_4(CR855079|pid:none) Oryza sativa genomic DNA, chromoso... 309 5e-82 AC150190_4(AC150190|pid:none) Oryza sativa (japonica cultivar-gr... 308 9e-82 AC097278_20(AC097278|pid:none) Oryza sativa chromosome 10 BAC OS... 298 1e-81 AC145272_2(AC145272|pid:none) Oryza sativa (japonica cultivar-gr... 300 2e-81 AC136220_5(AC136220|pid:none) Oryza sativa (japonica cultivar-gr... 300 2e-81 AL606605_2(AL606605|pid:none) Oryza sativa genomic DNA, chromoso... 299 2e-81 AL731603_4(AL731603|pid:none) Oryza sativa genomic DNA, chromoso... 299 3e-81 CR855022_1(CR855022|pid:none) Oryza sativa (indica cultivar-grou... 306 4e-81 AC119670_26(AC119670|pid:none) Oryza sativa (japonica cultivar-g... 293 5e-81 CR855045_2(CR855045|pid:none) Oryza sativa (indica cultivar-grou... 306 5e-81 AC091732_8(AC091732|pid:none) Oryza sativa (japonica cultivar-gr... 297 6e-81 AL662936_18(AL662936|pid:none) Oryza sativa genomic DNA, chromos... 298 6e-81 AY040832_1(AY040832|pid:none) Hordeum vulgare Ty3/gypsy retrotra... 305 8e-81 AL731643_21(AL731643|pid:none) Oryza sativa genomic DNA, chromos... 297 1e-80 AC145272_7(AC145272|pid:none) Oryza sativa (japonica cultivar-gr... 298 2e-80 AC137003_9(AC137003|pid:none) Oryza sativa (japonica cultivar-gr... 303 4e-80 DQ365821_2(DQ365821|pid:none) Oryza australiensis transposon Ty3... 303 5e-80 AJ966994_1(AJ966994|pid:none) Lotus corniculatus var. japonicus ... 303 5e-80 AC131968_10(AC131968|pid:none) Oryza sativa (japonica cultivar-g... 302 7e-80 T07863(T07863) probable polyprotein - pineapple retrotransposon ... 302 9e-80 AC104322_8(AC104322|pid:none) Oryza sativa chromosome 10 BAC OSJ... 292 2e-79 AL663012_2(AL663012|pid:none) Oryza sativa genomic DNA, chromoso... 301 2e-79 CR855238_3(CR855238|pid:none) Oryza sativa genomic DNA, chromoso... 300 3e-79 AL731643_22(AL731643|pid:none) Oryza sativa genomic DNA, chromos... 300 3e-79 AF119040_1(AF119040|pid:none) Lycopersicon esculentum haplotype ... 300 3e-79 AL663011_11(AL663011|pid:none) Oryza sativa genomic DNA, chromos... 300 4e-79 AC148360_22(AC148360|pid:none) Medicago truncatula clone mth2-27... 300 4e-79 AM461210_1(AM461210|pid:none) Vitis vinifera contig VV78X271543.... 299 6e-79 AC137747_4(AC137747|pid:none) Oryza sativa (japonica cultivar-gr... 291 7e-79 AC006570_3(AC006570|pid:none) Arabidopsis thaliana chromosome 2 ... 299 7e-79 AL606630_12(AL606630|pid:none) Oryza sativa genomic DNA, chromos... 299 7e-79 AL731643_10(AL731643|pid:none) Oryza sativa genomic DNA, chromos... 298 1e-78 AC105743_20(AC105743|pid:none) Oryza sativa chromosome 3 BAC OSJ... 298 1e-78 AC138199_20(AC138199|pid:none) Medicago truncatula clone mth2-15... 298 1e-78 AC119149_12(AC119149|pid:none) Oryza sativa (japonica cultivar-g... 298 1e-78 CR855237_9(CR855237|pid:none) Oryza sativa genomic DNA, chromoso... 290 2e-78 AM439547_2(AM439547|pid:none) Vitis vinifera contig VV78X109768.... 298 2e-78 AL662937_25(AL662937|pid:none) Oryza sativa genomic DNA, chromos... 298 2e-78 DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps... 297 2e-78 AC069473_21(AC069473|pid:none) Arabidopsis thaliana chromosome 3... 297 2e-78 AL731625_11(AL731625|pid:none) Oryza sativa (japonica cultivar-g... 288 5e-78 AL731602_7(AL731602|pid:none) Oryza sativa genomic DNA, chromoso... 296 5e-78 CR855171_10(CR855171|pid:none) Oryza sativa (indica cultivar-gro... 296 5e-78 AM436113_5(AM436113|pid:none) Vitis vinifera contig VV78X033734.... 296 6e-78 AC137747_11(AC137747|pid:none) Oryza sativa (japonica cultivar-g... 296 6e-78 AC147811_20(AC147811|pid:none) Oryza sativa (japonica cultivar-g... 295 8e-78 AC154033_4(AC154033|pid:none) Solanum demissum chromosome 5 clon... 281 1e-77 AL731636_8(AL731636|pid:none) Oryza sativa genomic DNA, chromoso... 295 1e-77 AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar... 288 2e-77 AM474226_1(AM474226|pid:none) Vitis vinifera contig VV78X054870.... 293 3e-77 AC091749_12(AC091749|pid:none) Oryza sativa chromosome 10 BAC OS... 293 5e-77 AF499727_6(AF499727|pid:none) Cucumis melo BAC clone PIT92-60K17... 293 5e-77 AL662937_15(AL662937|pid:none) Oryza sativa genomic DNA, chromos... 293 5e-77 AC119149_3(AC119149|pid:none) Oryza sativa (japonica cultivar-gr... 292 7e-77 AC021892_34(AC021892|pid:none) Genomic sequence for Oryza sativa... 292 7e-77 AB458444_50(AB458444|pid:none) Oryza sativa Indica Group Kasalat... 291 1e-76 CR855207_3(CR855207|pid:none) Oryza sativa genomic DNA, chromoso... 291 2e-76 AC078839_1(AC078839|pid:none) Oryza sativa (japonica cultivar-gr... 290 3e-76 CR380953_301(CR380953|pid:none) Candida glabrata strain CBS138 c... 290 5e-76 AY673967_1(AY673967|pid:none) Candida glabrata transposon LTR-re... 290 5e-76 AC022352_16(AC022352|pid:none) Genomic Sequence for Oryza sativa... 290 5e-76 AC126008_33(AC126008|pid:none) Medicago truncatula clone mth2-13... 289 8e-76 AF051915_2(AF051915|pid:none) Cladosporium fulvum CfT-1 LTR-retr... 288 1e-75 AC149290_9(AC149290|pid:none) Solanum demissum chromosome 5 clon... 288 1e-75 CR855060_5(CR855060|pid:none) Oryza sativa genomic DNA, chromoso... 288 1e-75 AC134047_6(AC134047|pid:none) Oryza sativa (japonica cultivar-gr... 288 1e-75 AC119290_7(AC119290|pid:none) Oryza sativa (japonica cultivar-gr... 288 2e-75 AM476928_2(AM476928|pid:none) Vitis vinifera contig VV78X023854.... 287 2e-75 AC137610_4(AC137610|pid:none) Oryza sativa (japonica cultivar-gr... 286 5e-75 AC134046_23(AC134046|pid:none) Oryza sativa (japonica cultivar-g... 286 5e-75 AL663004_6(AL663004|pid:none) Oryza sativa genomic DNA, chromoso... 286 7e-75 AC021892_20(AC021892|pid:none) Genomic sequence for Oryza sativa... 285 1e-74 AL663004_5(AL663004|pid:none) Oryza sativa genomic DNA, chromoso... 284 2e-74 AC011621_1(AC011621|pid:none) Arabidopsis thaliana chromosome II... 283 4e-74 AC080019_10(AC080019|pid:none) Genomic sequence for Oryza sativa... 281 2e-73 AL662962_13(AL662962|pid:none) Oryza sativa genomic DNA, chromos... 280 3e-73 AC091680_31(AC091680|pid:none) Oryza sativa chromosome 10 BAC OS... 278 1e-72 AL731644_9(AL731644|pid:none) Oryza sativa genomic DNA, chromoso... 267 2e-72 AJ439555_2(AJ439555|pid:none) Saccharomyces exiguus LTR-retrotra... 277 2e-72 AC129718_16(AC129718|pid:none) Oryza sativa (japonica cultivar-g... 277 3e-72 AL606690_14(AL606690|pid:none) Oryza sativa genomic DNA, chromos... 276 4e-72 AP005722_25(AP005722|pid:none) Oryza sativa Japonica Group genom... 276 4e-72 AC092388_12(AC092388|pid:none) Oryza sativa chromosome 10 BAC OS... 267 5e-72 AM446694_2(AM446694|pid:none) Vitis vinifera contig VV78X219773.... 276 5e-72 AF466646_9(AF466646|pid:none) Zea mays putative transposase (Z19... 276 5e-72 AC112208_29(AC112208|pid:none) Oryza sativa (japonica cultivar-g... 274 3e-71 AP008207_1945(AP008207|pid:none) Oryza sativa (japonica cultivar... 273 3e-71 AM477145_2(AM477145|pid:none) Vitis vinifera contig VV78X252996.... 271 4e-71 AC137606_17(AC137606|pid:none) Oryza sativa (japonica cultivar-g... 273 4e-71 AC132489_6(AC132489|pid:none) Oryza sativa (japonica cultivar-gr... 273 4e-71 AC080019_14(AC080019|pid:none) Genomic sequence for Oryza sativa... 272 7e-71 AL663005_17(AL663005|pid:none) Oryza sativa genomic DNA, chromos... 271 1e-70 AL731604_12(AL731604|pid:none) Oryza sativa genomic DNA, chromos... 271 2e-70 AM471078_1(AM471078|pid:none) Vitis vinifera contig VV78X257783.... 270 3e-70 AC146526_16(AC146526|pid:none) Oryza sativa (japonica cultivar-g... 270 5e-70 AC068924_24(AC068924|pid:none) Oryza sativa chromosome 10 BAC OS... 264 9e-70 AF264028_2(AF264028|pid:none) Colletotrichum gloeosporioides aut... 268 2e-69 (Q05654) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 267 2e-69 AL035248_8(AL035248|pid:none) S.pombe chromosome I cosmid c167. 267 2e-69 AL442108_7(AL442108|pid:none) Oryza sativa genomic DNA, chromoso... 266 5e-69 CR855237_6(CR855237|pid:none) Oryza sativa genomic DNA, chromoso... 266 7e-69 (Q9UR07) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 266 7e-69 (Q9C0R2) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 266 7e-69 AC137991_5(AC137991|pid:none) Oryza sativa chromosome 3 BAC OSJN... 264 2e-68 AC137606_15(AC137606|pid:none) Oryza sativa (japonica cultivar-g... 264 3e-68 CR855134_2(CR855134|pid:none) Oryza sativa (indica cultivar-grou... 264 3e-68 AC135503_5(AC135503|pid:none) Oryza sativa (japonica cultivar-gr... 263 3e-68 CR855107_8(CR855107|pid:none) Oryza sativa (indica cultivar-grou... 263 3e-68 AJ864642_1(AJ864642|pid:none) Orpinomyces sp. OUS1 partial putat... 263 5e-68 AC136141_29(AC136141|pid:none) Medicago truncatula clone mth2-12... 248 5e-68 AL662939_17(AL662939|pid:none) Oryza sativa genomic DNA, chromos... 261 1e-67 AC093612_16(AC093612|pid:none) Oryza sativa (japonica cultivar-g... 261 2e-67 AC007789_10(AC007789|pid:none) Oryza sativa BAC OSJNBa0049B20 ge... 261 2e-67 AM468153_1(AM468153|pid:none) Vitis vinifera contig VV78X194966.... 260 4e-67 AC080019_15(AC080019|pid:none) Genomic sequence for Oryza sativa... 260 4e-67 AC098565_11(AC098565|pid:none) Oryza sativa chromosome 10 clone ... 249 4e-67 AC131966_1(AC131966|pid:none) Oryza sativa (japonica cultivar-gr... 249 4e-67 AC092748_33(AC092748|pid:none) Genomic sequence for Oryza sativa... 259 5e-67 L35053_2(L35053|pid:none) Magnaporthe grisea transposon LTR retr... 259 9e-67 AY360387_15(AY360387|pid:none) Oryza sativa (japonica cultivar-g... 258 1e-66 AC091233_22(AC091233|pid:none) Oryza sativa chromosome 3 BAC OSJ... 258 1e-66 AJ000387_3(AJ000387|pid:none) Drosophila melanogaster ZAM retroe... 257 2e-66 A84460(A84460) probable retroelement pol polyprotein [imported] ... 256 4e-66 AL606639_1(AL606639|pid:none) Oryza sativa genomic DNA, chromoso... 254 2e-65 AM432176_2(AM432176|pid:none) Vitis vinifera contig VV78X039936.... 254 2e-65 AC092172_7(AC092172|pid:none) Oryza sativa (japonica cultivar-gr... 253 4e-65 AC135594_6(AC135594|pid:none) Oryza sativa chromosome 3 BAC OSJN... 253 4e-65 AL731586_16(AL731586|pid:none) Oryza sativa (japonica cultivar-g... 253 4e-65 AC135594_30(AC135594|pid:none) Oryza sativa chromosome 3 BAC OSJ... 253 6e-65 AL731594_11(AL731594|pid:none) Oryza sativa genomic DNA, chromos... 253 6e-65 AF458768_1(AF458768|pid:none) Oryza sativa LTR retrotransposon O... 252 1e-64 AC183435_9(AC183435|pid:none) Asparagus officinalis clone 025-10... 251 2e-64 AL663011_12(AL663011|pid:none) Oryza sativa genomic DNA, chromos... 250 3e-64 AC161107_16(AC161107|pid:none) Medicago truncatula clone mth2-19... 249 5e-64 AE017352_52(AE017352|pid:none) Cryptococcus neoformans var. neof... 249 7e-64 AB028613_7(AB028613|pid:none) Arabidopsis thaliana genomic DNA, ... 249 9e-64 AM444891_1(AM444891|pid:none) Vitis vinifera contig VV78X141130.... 248 1e-63 AM440848_1(AM440848|pid:none) Vitis vinifera contig VV78X161940.... 248 1e-63 AC148393_22(AC148393|pid:none) Oryza sativa (japonica cultivar-g... 248 2e-63 AC135957_7(AC135957|pid:none) Oryza sativa (japonica cultivar-gr... 248 2e-63 AC135959_19(AC135959|pid:none) Medicago truncatula clone mth2-26... 248 2e-63 AL731602_9(AL731602|pid:none) Oryza sativa genomic DNA, chromoso... 247 3e-63 AL731602_5(AL731602|pid:none) Oryza sativa genomic DNA, chromoso... 247 3e-63 CU633899_197(CU633899|pid:none) Podospora anserina genomic DNA c... 247 3e-63 AC078944_15(AC078944|pid:none) Genomic Sequence for Oryza sativa... 245 1e-62 AC007534_17(AC007534|pid:none) Genomic sequence for Arabidopsis ... 244 2e-62 AY928610_2(AY928610|pid:none) Drosophila melanogaster chromosome... 244 2e-62 CR855084_1(CR855084|pid:none) Oryza sativa genomic DNA, chromoso... 244 3e-62 AC136519_7(AC136519|pid:none) Oryza sativa (japonica cultivar-gr... 243 4e-62 AL663009_11(AL663009|pid:none) Oryza sativa genomic DNA, chromos... 243 5e-62 AC084218_12(AC084218|pid:none) Oryza sativa (japonica cultivar-g... 240 3e-61 AM477499_3(AM477499|pid:none) Vitis vinifera contig VV78X042069.... 239 5e-61 AM487002_1(AM487002|pid:none) Vitis vinifera contig VV78X106005.... 239 9e-61 AM451829_1(AM451829|pid:none) Vitis vinifera contig VV78X165873.... 238 2e-60 AF030881_2(AF030881|pid:none) Takifugu rubripes sushi-ichi retro... 238 2e-60 AC105743_2(AC105743|pid:none) Oryza sativa chromosome 3 BAC OSJN... 237 3e-60 AM444333_2(AM444333|pid:none) Vitis vinifera contig VV78X133939.... 237 3e-60 AC097446_1(AC097446|pid:none) Oryza sativa (japonica cultivar-gr... 236 5e-60 AC131966_15(AC131966|pid:none) Oryza sativa (japonica cultivar-g... 236 5e-60 CR855059_3(CR855059|pid:none) Oryza sativa (indica cultivar-grou... 234 2e-59 CR855232_10(CR855232|pid:none) Oryza sativa genomic DNA, chromos... 234 2e-59 AL662948_14(AL662948|pid:none) Oryza sativa genomic DNA, chromos... 233 5e-59 AM425409_5(AM425409|pid:none) Vitis vinifera contig VV78X052478.... 232 9e-59 AM426702_2(AM426702|pid:none) Vitis vinifera contig VV78X044649.... 232 1e-58 AC131375_23(AC131375|pid:none) Oryza sativa (japonica cultivar-g... 231 1e-58 AC090714_13(AC090714|pid:none) Oryza sativa chromosome 3 BAC OSJ... 231 2e-58 EF426679_3(EF426679|pid:none) Drosophila ananassae retrotranspos... 229 7e-58 AM434825_2(AM434825|pid:none) Vitis vinifera contig VV78X093963.... 229 9e-58 AY013569_1(AY013569|pid:none) Clonorchis sinensis clone 4 LTR re... 228 2e-57 AM484251_1(AM484251|pid:none) Vitis vinifera contig VV78X248596.... 228 2e-57 AC104712_4(AC104712|pid:none) Oryza sativa (japonica cultivar-gr... 227 3e-57 AM477021_1(AM477021|pid:none) Vitis vinifera contig VV78X255865.... 227 4e-57 DQ444467_1(DQ444467|pid:none) Nosema bombycis retrotransposon Nb... 227 4e-57 DQ408427_2(DQ408427|pid:none) Drosophila buzzatii Isis retrotran... 227 4e-57 AM478165_1(AM478165|pid:none) Vitis vinifera contig VV78X095284.... 227 4e-57 AM464172_2(AM464172|pid:none) Vitis vinifera contig VV78X170761.... 226 6e-57 AM424660_2(AM424660|pid:none) Vitis vinifera contig VV78X086766.... 226 8e-57 AM470947_2(AM470947|pid:none) Vitis vinifera contig VV78X111490.... 226 8e-57 AC091724_19(AC091724|pid:none) Oryza sativa (japonica cultivar-g... 212 1e-56 AC137609_15(AC137609|pid:none) Oryza sativa (japonica cultivar-g... 225 1e-56 AC133004_16(AC133004|pid:none) Oryza sativa (japonica cultivar-g... 225 1e-56 AC137613_6(AC137613|pid:none) Oryza sativa (japonica cultivar-gr... 225 1e-56 AM431414_1(AM431414|pid:none) Vitis vinifera contig VV78X107372.... 225 1e-56 AM445248_2(AM445248|pid:none) Vitis vinifera contig VV78X215774.... 225 1e-56 AM481999_1(AM481999|pid:none) Vitis vinifera contig VV78X241394.... 224 2e-56 AM442294_3(AM442294|pid:none) Vitis vinifera contig VV78X245739.... 224 2e-56 AM474911_2(AM474911|pid:none) Vitis vinifera contig VV78X051397.... 223 4e-56 AL732332_2(AL732332|pid:none) Oryza sativa genomic DNA, chromoso... 204 6e-56 AL731598_6(AL731598|pid:none) Oryza sativa genomic DNA, chromoso... 222 9e-56 AF222049_2(AF222049|pid:none) Drosophila melanogaster Transpac t... 222 9e-56 AM475507_1(AM475507|pid:none) Vitis vinifera contig VV78X235683.... 222 1e-55 AP008213_1128(AP008213|pid:none) Oryza sativa (japonica cultivar... 222 1e-55 AY013565_1(AY013565|pid:none) Clonorchis sinensis clone 52 LTR r... 222 1e-55 AM446832_1(AM446832|pid:none) Vitis vinifera contig VV78X211827.... 221 2e-55 AM454623_2(AM454623|pid:none) Vitis vinifera contig VV78X191095.... 221 3e-55 AM423819_2(AM423819|pid:none) Vitis vinifera contig VV78X084947.... 220 3e-55 AM428474_1(AM428474|pid:none) Vitis vinifera contig VV78X080159.... 220 4e-55 AL731640_11(AL731640|pid:none) Oryza sativa (japonica cultivar-g... 219 7e-55 AM461164_1(AM461164|pid:none) Vitis vinifera contig VV78X258163.... 219 1e-54 AM452225_2(AM452225|pid:none) Vitis vinifera contig VV78X060228.... 219 1e-54 AC149266_11(AC149266|pid:none) Solanum demissum chromosome 5 clo... 218 2e-54 AM478668_1(AM478668|pid:none) Vitis vinifera contig VV78X256863.... 218 2e-54 AF364550_2(AF364550|pid:none) Drosophila melanogaster transposon... 218 2e-54 AM478068_2(AM478068|pid:none) Vitis vinifera contig VV78X183017.... 217 3e-54 AM484516_3(AM484516|pid:none) Vitis vinifera contig VV78X098166.... 217 4e-54 AM427137_3(AM427137|pid:none) Vitis vinifera contig VV78X054303.... 217 4e-54 AL731598_10(AL731598|pid:none) Oryza sativa genomic DNA, chromos... 216 5e-54 AM479061_2(AM479061|pid:none) Vitis vinifera contig VV78X003404.... 216 5e-54 AL663009_10(AL663009|pid:none) Oryza sativa genomic DNA, chromos... 216 5e-54 AM932520_2(AM932520|pid:none) Lubomirskia baicalensis silcatein ... 216 6e-54 AM447668_1(AM447668|pid:none) Vitis vinifera contig VV78X175387.... 216 6e-54 B36329(B36329)hypothetical protein 2 - cabbage looper transposon... 216 6e-54 AM461282_4(AM461282|pid:none) Vitis vinifera contig VV78X151187.... 216 6e-54 CR855040_3(CR855040|pid:none) Oryza sativa genomic DNA, chromoso... 216 8e-54 AM429562_2(AM429562|pid:none) Vitis vinifera contig VV78X055853.... 215 1e-53 AL442118_12(AL442118|pid:none) Oryza sativa genomic DNA, chromos... 215 1e-53 AM473236_3(AM473236|pid:none) Vitis vinifera contig VV78X247839.... 215 1e-53 L23646_13(L23646|pid:none) Caenorhabditis elegans cosmid F44E2, ... 214 2e-53 AJ133521_2(AJ133521|pid:none) Drosophila buzzatii osvaldo retrot... 214 2e-53 AM483682_2(AM483682|pid:none) Vitis vinifera contig VV79X004810.... 214 2e-53 T18572(T18572) gag, pol and env protein precursor - Caenorhabdit... 214 2e-53 DQ985395_2(DQ985395|pid:none) Adineta vaga retrotransposon Juno1... 209 2e-53 AM440494_1(AM440494|pid:none) Vitis vinifera contig VV78X015907.... 214 3e-53 AM486637_1(AM486637|pid:none) Vitis vinifera contig VV78X065665.... 213 4e-53 AM424388_1(AM424388|pid:none) Vitis vinifera contig VV79X000602.... 213 5e-53 AL662944_10(AL662944|pid:none) Oryza sativa genomic DNA, chromos... 213 7e-53 AL663020_6(AL663020|pid:none) Oryza sativa genomic DNA, chromoso... 212 1e-52 AM460814_5(AM460814|pid:none) Vitis vinifera contig VV78X194533.... 212 1e-52 AM440596_2(AM440596|pid:none) Vitis vinifera contig VV78X027473.... 212 1e-52 AF492764_2(AF492764|pid:none) Drosophila melanogaster transposon... 211 2e-52 AM439165_1(AM439165|pid:none) Vitis vinifera contig VV78X102694.... 211 2e-52 T43046(T43046) retrovirus-related pol polyprotein homolog - Medi... 211 2e-52 AM459325_7(AM459325|pid:none) Vitis vinifera contig VV78X088974.... 211 2e-52 AM482401_2(AM482401|pid:none) Vitis vinifera contig VV78X104175.... 211 3e-52 AM429977_1(AM429977|pid:none) Vitis vinifera contig VV78X209205.... 211 3e-52 EF710649_21(EF710649|pid:none) Glyptapanteles flavicoxis clone B... 211 3e-52 AM466213_1(AM466213|pid:none) Vitis vinifera contig VV78X075816.... 210 3e-52 AL731615_12(AL731615|pid:none) Oryza sativa genomic DNA, chromos... 209 6e-52 AC091680_34(AC091680|pid:none) Oryza sativa chromosome 10 BAC OS... 209 6e-52 AM451549_1(AM451549|pid:none) Vitis vinifera contig VV78X083010.... 209 6e-52 AM455686_1(AM455686|pid:none) Vitis vinifera contig VV78X255536.... 209 8e-52 AF541948_2(AF541948|pid:none) Drosophila melanogaster transposon... 209 1e-51 AM469632_1(AM469632|pid:none) Vitis vinifera contig VV78X096591.... 208 1e-51 AM475043_2(AM475043|pid:none) Vitis vinifera contig VV78X132196.... 208 2e-51 AM480920_1(AM480920|pid:none) Vitis vinifera contig VV79X003057.... 207 2e-51 AM465595_2(AM465595|pid:none) Vitis vinifera contig VV78X127309.... 207 3e-51 (Q8I7P9) RecName: Full=Retrovirus-related Pol polyprotein from t... 207 4e-51 AM448094_2(AM448094|pid:none) Vitis vinifera contig VV78X115004.... 206 5e-51 AY050234_1(AY050234|pid:none) Drosophila melanogaster SD02026 fu... 206 5e-51 AM465541_3(AM465541|pid:none) Vitis vinifera contig VV78X081861.... 206 5e-51 AC119149_15(AC119149|pid:none) Oryza sativa (japonica cultivar-g... 206 7e-51 AM489048_4(AM489048|pid:none) Vitis vinifera contig VV78X019039.... 206 7e-51 AC151743_25(AC151743|pid:none) Medicago truncatula clone mth2-25... 206 7e-51 AL731604_18(AL731604|pid:none) Oryza sativa genomic DNA, chromos... 206 9e-51 AM449111_2(AM449111|pid:none) Vitis vinifera contig VV78X139463.... 206 9e-51 AM447355_1(AM447355|pid:none) Vitis vinifera contig VV78X043790.... 205 1e-50 AM443753_3(AM443753|pid:none) Vitis vinifera contig VV78X040989.... 205 1e-50 AC121241_22(AC121241|pid:none) Medicago truncatula clone mth2-4n... 205 1e-50 AM470852_2(AM470852|pid:none) Vitis vinifera contig VV78X249707.... 205 1e-50 AM426812_4(AM426812|pid:none) Vitis vinifera contig VV78X023720.... 204 2e-50 AM423811_3(AM423811|pid:none) Vitis vinifera contig VV78X155349.... 204 2e-50 (P20825) RecName: Full=Retrovirus-related Pol polyprotein from t... 204 3e-50 AP008207_2914(AP008207|pid:none) Oryza sativa (japonica cultivar... 196 4e-50 AC083944_15(AC083944|pid:none) Genomic sequence for Oryza sativa... 203 4e-50 AM425684_1(AM425684|pid:none) Vitis vinifera contig VV78X012679.... 203 4e-50 AM455468_2(AM455468|pid:none) Vitis vinifera contig VV78X156887.... 203 4e-50 CR855120_9(CR855120|pid:none) Oryza sativa (indica cultivar-grou... 203 6e-50 AM486380_1(AM486380|pid:none) Vitis vinifera contig VV78X072871.... 203 6e-50 AM432478_1(AM432478|pid:none) Vitis vinifera contig VV78X235622.... 203 6e-50 AM461146_2(AM461146|pid:none) Vitis vinifera contig VV78X136354.... 203 6e-50 AL731596_19(AL731596|pid:none) Oryza sativa genomic DNA, chromos... 203 6e-50 DQ453964_2(DQ453964|pid:none) Oryza sativa (indica cultivar-grou... 202 9e-50 DQ444465_1(DQ444465|pid:none) Nosema bombycis retrotransposon Nb... 202 1e-49 AM442275_1(AM442275|pid:none) Vitis vinifera contig VV78X083742.... 201 2e-49 AJ009736_2(AJ009736|pid:none) Drosophila melanogaster Idefix ret... 201 2e-49 S02021(S02021)micropia polyprotein - fruit fly (Drosophila melan... 201 2e-49 AM458280_1(AM458280|pid:none) Vitis vinifera contig VV78X159862.... 201 3e-49 AM433639_5(AM433639|pid:none) Vitis vinifera contig VV78X203213.... 201 3e-49 AM453810_1(AM453810|pid:none) Vitis vinifera contig VV78X250948.... 200 4e-49 AM439848_1(AM439848|pid:none) Vitis vinifera contig VV78X085604.... 200 5e-49 AC090488_7(AC090488|pid:none) Genomic sequence for Oryza sativa,... 199 8e-49 AC137615_2(AC137615|pid:none) Genomic sequence for Oryza sativa,... 198 1e-48 AB458444_100(AB458444|pid:none) Oryza sativa Indica Group Kasala... 198 2e-48 AM432907_2(AM432907|pid:none) Vitis vinifera contig VV78X106103.... 198 2e-48 AM482978_1(AM482978|pid:none) Vitis vinifera contig VV78X117964.... 198 2e-48 AF077407_4(AF077407|pid:none) Arabidopsis thaliana BAC F9D12. &... 197 4e-48 DQ444472_1(DQ444472|pid:none) Nosema bombycis retrotransposon Nb... 197 4e-48 AL606634_12(AL606634|pid:none) Oryza sativa genomic DNA, chromos... 197 4e-48 AP008217_1231(AP008217|pid:none) Oryza sativa (japonica cultivar... 196 5e-48 AC123570_18(AC123570|pid:none) Medicago truncatula clone mth2-33... 196 5e-48 AY360392_7(AY360392|pid:none) Oryza sativa (japonica cultivar-gr... 196 7e-48 AB281063_1(AB281063|pid:none) Clonorchis sinensis retrotransposo... 196 9e-48 AM468506_1(AM468506|pid:none) Vitis vinifera contig VV78X270902.... 195 1e-47 AM487528_1(AM487528|pid:none) Vitis vinifera contig VV78X169703.... 195 1e-47 S44816(S44816)F44E2.1 protein - Caenorhabditis elegans 195 2e-47 AM488919_1(AM488919|pid:none) Vitis vinifera contig VV78X144548.... 194 3e-47 CR854995_2(CR854995|pid:none) Oryza sativa (indica cultivar-grou... 193 4e-47 CR854995_1(CR854995|pid:none) Oryza sativa (indica cultivar-grou... 193 4e-47 AY360386_11(AY360386|pid:none) Oryza sativa (japonica cultivar-g... 193 4e-47 AC183436_44(AC183436|pid:none) Asparagus officinalis clone 025-3... 192 1e-46 AM472469_1(AM472469|pid:none) Vitis vinifera contig VV79X000183.... 192 1e-46 AM473153_2(AM473153|pid:none) Vitis vinifera contig VV78X068699.... 192 1e-46 CR855043_9(CR855043|pid:none) Oryza sativa (indica cultivar-grou... 191 2e-46 AC098682_12(AC098682|pid:none) Genomic sequence for Oryza sativa... 191 2e-46 AM469923_2(AM469923|pid:none) Vitis vinifera contig VV78X167224.... 191 3e-46 AM480532_1(AM480532|pid:none) Vitis vinifera contig VV78X105742.... 190 4e-46 AC133005_18(AC133005|pid:none) Oryza sativa (japonica cultivar-g... 190 4e-46 AC080019_8(AC080019|pid:none) Genomic sequence for Oryza sativa,... 190 4e-46 AM430202_4(AM430202|pid:none) Vitis vinifera contig VV78X117241.... 190 5e-46 AM451555_2(AM451555|pid:none) Vitis vinifera contig VV78X265602.... 190 5e-46 AL662968_12(AL662968|pid:none) Oryza sativa genomic DNA, chromos... 188 2e-45 AM461214_2(AM461214|pid:none) Vitis vinifera contig VV78X271542.... 187 2e-45 AP008208_1285(AP008208|pid:none) Oryza sativa (japonica cultivar... 187 2e-45 AM481653_4(AM481653|pid:none) Vitis vinifera contig VV78X045989.... 187 4e-45 AM486465_2(AM486465|pid:none) Vitis vinifera contig VV78X021272.... 186 5e-45 AC137609_6(AC137609|pid:none) Oryza sativa (japonica cultivar-gr... 186 7e-45 AB458444_107(AB458444|pid:none) Oryza sativa Indica Group Kasala... 186 7e-45 AM424945_1(AM424945|pid:none) Vitis vinifera contig VV78X236190.... 186 9e-45 AM470637_1(AM470637|pid:none) Vitis vinifera contig VV78X207247.... 186 9e-45 AL606449_8(AL606449|pid:none) Oryza sativa genomic DNA, chromoso... 185 2e-44 AM448670_1(AM448670|pid:none) Vitis vinifera contig VV78X204350.... 185 2e-44 AM901561_1(AM901561|pid:none) Musa acuminata subsp. malaccensis ... 185 2e-44 AM469115_3(AM469115|pid:none) Vitis vinifera contig VV78X121961.... 184 2e-44 AM437302_2(AM437302|pid:none) Vitis vinifera contig VV78X129225.... 184 3e-44 AM437996_1(AM437996|pid:none) Vitis vinifera contig VV78X084696.... 184 3e-44 AM423679_3(AM423679|pid:none) Vitis vinifera contig VV78X078339.... 183 5e-44 AM477693_3(AM477693|pid:none) Vitis vinifera contig VV78X188466.... 183 6e-44 AM901562_1(AM901562|pid:none) Musa acuminata subsp. malaccensis ... 182 8e-44 X14037_1(X14037|pid:none) D.melanogaster micropia-Dm11 retrotran... 182 8e-44 DQ889228_2(DQ889228|pid:none) Drosophila erecta endogenous virus... 182 8e-44 AC147774_16(AC147774|pid:none) Medicago truncatula chromosome 2 ... 182 1e-43 AC120534_21(AC120534|pid:none) Oryza sativa (japonica cultivar-g... 181 2e-43 AM424189_3(AM424189|pid:none) Vitis vinifera contig VV78X202739.... 181 2e-43 AC120534_22(AC120534|pid:none) Oryza sativa (japonica cultivar-g... 181 2e-43 AM423741_1(AM423741|pid:none) Vitis vinifera contig VV78X027251.... 181 2e-43 AM461172_1(AM461172|pid:none) Vitis vinifera contig VV78X174581.... 181 2e-43 AL606447_14(AL606447|pid:none) Oryza sativa genomic DNA, chromos... 181 2e-43 AC137610_18(AC137610|pid:none) Oryza sativa (japonica cultivar-g... 181 3e-43 X03734_1(X03734|pid:none) D. melanogaster retrotransposon gypsy ... 180 4e-43 AM473449_1(AM473449|pid:none) Vitis vinifera contig VV78X185032.... 180 5e-43 AC152405_45(AC152405|pid:none) Medicago truncatula clone mth2-49... 179 7e-43 AF033821_2(AF033821|pid:none) Drosophila melanogaster gypsy tran... 179 1e-42 AM431020_4(AM431020|pid:none) Vitis vinifera contig VV78X184725.... 179 1e-42 (P10401) RecName: Full=Retrovirus-related Pol polyprotein from t... 179 1e-42 AC097446_22(AC097446|pid:none) Oryza sativa (japonica cultivar-g... 179 1e-42 DQ887186_2(DQ887186|pid:none) Drosophila melanogaster clone B10 ... 178 1e-42 DQ444468_1(DQ444468|pid:none) Nosema bombycis retrotransposon Nb... 178 1e-42 EF591042_2(EF591042|pid:none) Drosophila melanogaster clone 8.1 ... 178 1e-42 DQ887187_2(DQ887187|pid:none) Drosophila melanogaster clone 4.1 ... 178 2e-42 AC007730_14(AC007730|pid:none) Arabidopsis thaliana chromosome 2... 177 4e-42 (P10394) RecName: Full=Retrovirus-related Pol polyprotein from t... 176 6e-42 AY928609_2(AY928609|pid:none) Drosophila melanogaster chromosome... 176 6e-42 AB036885_1(AB036885|pid:none) Tricholoma magnivelare pol gene fo... 176 6e-42 AM487681_1(AM487681|pid:none) Vitis vinifera contig VV78X237309.... 176 7e-42 AC131968_11(AC131968|pid:none) Oryza sativa (japonica cultivar-g... 176 7e-42 EF591043_2(EF591043|pid:none) Drosophila melanogaster clone B18 ... 175 1e-41 AL663002_3(AL663002|pid:none) Oryza sativa genomic DNA, chromoso... 175 1e-41 AB281061_1(AB281061|pid:none) Clonorchis sinensis retrotransposo... 175 2e-41 S70430(S70430)hypothetical protein 4 - fruit fly (Drosophila mel... 175 2e-41 DQ536165_1(DQ536165|pid:none) Populus trichocarpa clone 14213185... 175 2e-41 DQ889229_2(DQ889229|pid:none) Drosophila erecta endogenous virus... 174 2e-41 AY113457_1(AY113457|pid:none) Drosophila melanogaster RE36839 fu... 174 4e-41 AB281065_1(AB281065|pid:none) Clonorchis sinensis retrotransposo... 173 6e-41 AC084766_13(AC084766|pid:none) Oryza sativa chromosome 3 BAC OSJ... 173 6e-41 AP008213_779(AP008213|pid:none) Oryza sativa (japonica cultivar-... 173 6e-41 AM458354_1(AM458354|pid:none) Vitis vinifera contig VV78X269116.... 172 8e-41 BX842604_3(BX842604|pid:none) Oryza sativa genomic DNA, chromoso... 172 1e-40 AM469654_4(AM469654|pid:none) Vitis vinifera contig VV78X072672.... 158 1e-40 U89994_2(U89994|pid:none) Drosophila melanogaster burdock retrot... 172 1e-40 AC158464_30(AC158464|pid:none) Medicago truncatula chromosome 2 ... 172 1e-40 AC146526_18(AC146526|pid:none) Oryza sativa (japonica cultivar-g... 171 3e-40 AP008207_1465(AP008207|pid:none) Oryza sativa (japonica cultivar... 171 3e-40 AM423465_2(AM423465|pid:none) Vitis vinifera contig VV78X128917.... 171 3e-40 AP008208_1169(AP008208|pid:none) Oryza sativa (japonica cultivar... 170 4e-40 AY830138_12(AY830138|pid:none) Ipomoea batatas cultivar Beaurega... 170 4e-40 AB007466_2(AB007466|pid:none) Vicia faba mRNA for reverse transc... 169 9e-40 AM440909_2(AM440909|pid:none) Vitis vinifera contig VV78X052866.... 169 9e-40 AL731599_11(AL731599|pid:none) Oryza sativa genomic DNA, chromos... 169 9e-40 AM440779_2(AM440779|pid:none) Vitis vinifera contig VV78X051669.... 169 1e-39 AM485804_2(AM485804|pid:none) Vitis vinifera contig VV78X120626.... 167 3e-39 BX548042_1(BX548042|pid:none) Zebrafish DNA sequence from clone ... 167 3e-39 AB036886_1(AB036886|pid:none) Tricholoma bakamatsutake pol gene ... 167 4e-39 AM434494_2(AM434494|pid:none) Vitis vinifera contig VV78X089075.... 166 6e-39 AM431146_4(AM431146|pid:none) Vitis vinifera contig VV78X184721.... 166 8e-39
>AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds. &T14598(T14598) Length = 1116
Score = 1459 bits (3778), Expect = 0.0 Identities = 717/720 (99%), Positives = 719/720 (99%) Frame = +2
Query: 1238 IIIKKDQDVEPTKKQIYYSTDDHKRHVEEMVIKFIDLGIIKRSESNYSSPIMLLKKRDSW 1417 II+KKDQDVEPTKKQIYYSTDDHKRHVEEMV+KFIDLGIIKRSESNYSSPIMLLKKRDSW Sbjct: 94 IILKKDQDVEPTKKQIYYSTDDHKRHVEEMVLKFIDLGIIKRSESNYSSPIMLLKKRDSW 153
Query: 1418 RVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEHAKYTAF 1597 RVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEHAKYTAF Sbjct: 154 RVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLFSKFDMIMGYFQVLINPEHAKYTAF 213
Query: 1598 ITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSLLQYFDDLLVHSKLDYMVHFIEII 1777 ITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSLLQYFDDLLVHSKLDYMVHFIEII Sbjct: 214 ITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKSLLQYFDDLLVHSKLDYMVHFIEII 273
Query: 1778 RMLLYCRKYLLFISREKSEMLKTEVDFLGFHIHKDGISPRAAKVRAISELPEPRNAKEAE 1957 RMLLYCRKYLLFISREKSEMLKTEVDFLGFHIHKDGISPRAAKVRAISELPEPRNAKEAE Sbjct: 274 RMLLYCRKYLLFISREKSEMLKTEVDFLGFHIHKDGISPRAAKVRAISELPEPRNAKEAE 333
Query: 1958 AALGLFGFFRRHIENYAEKTYHLSKESKGKNKKTLSDESLKEFNNLKKEFEGENIVAIPI 2137 AALGLFGFFRRHIENYAEKTYHLSKESKGKNKKTLSDESLKEFNNLKKEFEGENIVAIPI Sbjct: 334 AALGLFGFFRRHIENYAEKTYHLSKESKGKNKKTLSDESLKEFNNLKKEFEGENIVAIPI 393
Query: 2138 EQDNSIPIDIEKVKASTDMPIHSDNNNLNNGSFHLYCDVSDKALSGVLYQIQGNKFKVIW 2317 EQDNSIPIDIEKVKASTDMPIHSDNNNLNNGSFHLYCDVSDKALSGVLYQIQGNKFKVIW Sbjct: 394 EQDNSIPIDIEKVKASTDMPIHSDNNNLNNGSFHLYCDVSDKALSGVLYQIQGNKFKVIW 453
Query: 2318 FHSRKLTDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNLTYIINKSNDKPF 2497 FH RKLTDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNLTYIINKSNDKPF Sbjct: 454 FHCRKLTDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNLTYIINKSNDKPF 513
Query: 2498 TKRQDNYMKYIKEFDYELRHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQWLL 2677 TKRQDNYMKYIKEFDYELRHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQWLL Sbjct: 514 TKRQDNYMKYIKEFDYELRHISGKKNGIADFLSRKYDNFQWDESFLNKIKEEQINSQWLL 573
Query: 2678 EMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIREYHDTKYSGHHALDITYNNI 2857 EMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIREYHDTKYSGHHALDITYNNI Sbjct: 574 EMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIREYHDTKYSGHHALDITYNNI 633
Query: 2858 RQDYYFKEMFSIIKRYIKSCATCQLNINRKDNGILQSLEIPFEVWRDISIDFLSLPKTMY 3037 RQDYYFKEMFSIIKRYIKSCATCQLNINRKDNGILQSLEIPFEVWRDISIDFLSLPKTMY Sbjct: 634 RQDYYFKEMFSIIKRYIKSCATCQLNINRKDNGILQSLEIPFEVWRDISIDFLSLPKTMY 693
Query: 3038 AINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRD 3217 AINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRD Sbjct: 694 AINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRD 753
Query: 3218 PRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYGENWSDIIP 3397 PRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYGENWSDIIP Sbjct: 754 PRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYGENWSDIIP 813
Score = 533 bits (1374), Expect = e-149 Identities = 266/284 (93%), Positives = 268/284 (94%) Frame = +1
Query: 3457 QIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAQKYYNRGRGDVIFVVGE 3636 QIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINA KYYNRGRGDVIFVVGE Sbjct: 833 QIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAPKYYNRGRGDVIFVVGE 892
Query: 3637 KVMVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIV 3816 KVMVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIV Sbjct: 893 KVMVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIV 952
Query: 3817 KLYEDSEWLREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIKEVDTD 3996 KLYEDSEWLREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWI+EVDTD Sbjct: 953 KLYEDSEWLREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIREVDTD 1012
Query: 3997 CEELVREYWNNVQKKQLNSRRERENVTTEAVEPIVSPPLSQEVQSSQTLQPITPXXXXXX 4176 CEELVREYWNNVQKKQLNSRRERENVTTEAVEPIVSPPLS EVQSSQTLQPITP Sbjct: 1013 CEELVREYWNNVQKKQLNSRRERENVTTEAVEPIVSPPLSTEVQSSQTLQPITPRQQNSI 1072
Query: 4177 XXXXXXXKKRKSRNQNTSSEDDELDLSLQIKTTRSGRKVTPKSL 4308 KKRKSRNQNTSS+DDE DLSLQIKTTRSGRKVTPKSL Sbjct: 1073 SNQRNQSKKRKSRNQNTSSDDDEHDLSLQIKTTRSGRKVTPKSL 1116
Score = 252 bits (644), Expect(3) = 2e-88 Identities = 138/230 (60%), Positives = 155/230 (67%), Gaps = 9/230 (3%) Frame = +1
Query: 1 YGENWSDIIPLIEFAMNXXXXXXXXXXPFQIVYGFQSTNSR*SFQFINKDSYTNEQHQKR 180 YGENWSDIIPLIEFAMN PFQIVYGF F + K + K+ Sbjct: 804 YGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMS-NIKK 862
Query: 181 LSGDNILDAQINAQKYYNRGSW*CYLRSRRKR*WLKENSSKLIFQKI*SLTNLNPRIVDH 360 + DNILDAQINA KYYNRG + + K++ ++ TNL+ ++ H Sbjct: 863 IVRDNILDAQINAPKYYNRG----------RGDVIFVVGEKVMVKRKFFQTNLSKDLISH 912
Query: 361 S*SL----PFMVIM*HSS-----LVGYPKKHNVFNKDQIVKLYEDSEWLREEISMPEPEE 513 PF++ H + LVGYPKKHNVFNKDQIVKLYEDSEWLREEISMPEPEE Sbjct: 913 KLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIVKLYEDSEWLREEISMPEPEE 972
Query: 514 MDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIKEVDTDCEELVREYWN 663 MDEASYEVESILNHDKVKKMYLVKFKGYPEPEWI+EVDTDCEELVREYWN Sbjct: 973 MDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIREVDTDCEELVREYWN 1022
Score = 91.3 bits (225), Expect(3) = 2e-88 Identities = 49/65 (75%), Positives = 50/65 (76%) Frame = +3
Query: 753 SQEVQSSQTLQPITPXXXXXXXXXXXXXKKRKSRNQNTSSEDDELDLSLQIKTTRSGRKV 932 S EVQSSQTLQPITP KKRKSRNQNTSS+DDE DLSLQIKTTRSGRKV Sbjct: 1052 STEVQSSQTLQPITPRQQNSISNQRNQSKKRKSRNQNTSSDDDEHDLSLQIKTTRSGRKV 1111
Query: 933 TPKSL 947 TPKSL Sbjct: 1112 TPKSL 1116
Score = 31.2 bits (69), Expect(3) = 2e-88 Identities = 14/14 (100%), Positives = 14/14 (100%) Frame = +2
Query: 710 VTTEAVEPIVSPPL 751 VTTEAVEPIVSPPL Sbjct: 1038 VTTEAVEPIVSPPL 1051
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3268448 Number of Hits to DB: 7,012,251,666 Number of extensions: 138108707 Number of successful extensions: 571620 Number of sequences better than 10.0: 51863 Number of HSP's gapped: 401211 Number of HSP's successfully gapped: 53513 Length of query: 1533 Length of database: 1,061,185,681 Length adjustment: 142 Effective length of query: 1391 Effective length of database: 597,066,065 Effective search space: 830518896415 Effective search space used: 830518896415 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
8 |
VF (FL, S) |
3 |
AH (FL, L) |
14 |
AF (FL, S) |
4 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
6 |
SF (FL, S) |
0 |
CH (FL, L) |
5 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |