>Contig-U16568-1 (Contig-U16568-1Q) /CSM_Contig/Contig-U16568-1Q.Seq.d
CAAAGACACCACAATATAAATTATTAGTGGAATAACAGTTAAACAAAGAC
ACCACAATATAAATTATTAGTGGAATAACAGTTAAATAAAGACACCACAA
TATAAATTATTAGTGGAATAACAGTTATATTGATGCCATTGTTATAATTA
AAATAATTTAAGATAATATTTATTATCAATTAAATAATATAAAGACACCA
CAATAAAAATATATTAGTGGAATAACAGTTAACATATATTAATACTTATA
TTTAATTATTTAATTAAAAATTAAATTAAATTAAATTAAATAAATTAAAT
TAAATTATATAATTAAATTATGTAAATTAAATAAAAAAATTAAATTATAA
AATTAAATTATATTTAATAAATTTTATATATAATTGTTGGTGAAAGTCAT
GTCATCAACTACTACTCATTCAAAGAAAGCCATCCGTAAAGCCAAAGTGT
CTTCCACCGCCAAACGTGCCGCTGAAGTGACAACTGCCTCCGATGATGCT
ATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTGAAGTTGA
TGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCA
GAGAGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACC
ATTGACGCTTTAAAAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTT
TACCATCCACTGCTCCCAGAATGGTGTTGAACCAACCTTGAAGACCATTA
TGGACAATGGTGCTGCATCAAATGAATTATTTCAATTGCTTCAACCTACC
CACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAACATTAAA
GAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAA
CTGACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGT
AACTGCTACTCAGCCCAAGATGTTATAAAAAACATCGAAGCCATTATGAG
TTACCACAATGTAATTAATCCGGTGTATCTCATCCATGGTACTGCTGAAG
TTCAATTAGAGTATCTAAGATCAATTTTAGATAATAATATCCTTGCTTTG
TTAAAGATGGTCGTACCAGACTGGTTACAAACTGATGTTGCAATCAAACT
CAACACTCAAACCGATATCACCGAGTGTCGTGAAGCCATCACCGAGTTGG
TTCTTAACAATGCTGATAAGTTCTCGAGAAGAAGACCTTCCGATTCTGCA
TCGAATACTGATGAGAAGTTTCTATTAAAAAAGAATCATGCTACTCCAAA
TCATAACTCTCATAACAGGAATTCCTTTGATGCTCAAGCTGATAAGATTA
GAGCTGCAATATTACCCGAAATAAGAAAAGACTCTAAGGTAGACCTCAAA
AAGATAAGAAGCAGTTTCATCGTTTACCGTCAAAACAAAGGCTACTGTCT
CAATTGTGGTAAATCAAATCACTCCACATCTACATGTAGAATTGATCCGG
TCGATGCCAAAGCCAATCCAGGTCCATCAGCCAAAAAGCAACAAGACTCG
ATGAAGGTGATNAGTCCAAGTCAAAGATTTTAAATAAA----------GA
AAGCCAAGATTAACTTCCCGCTACTAGACGTCAAAGAAGAGTTTGTTGAA
CAAATCAATATACAAGTTAACAATGAAATTCATAACTTCTTTATTATAGA
ATTGGATATCATTGATGTACTTTTCGGTAATGATATCCTTAAGGACTCTA
TCATTAACCAAAAAGATAAAATAATCAAGTTGAATAACAGTACATACAAA
ATTAATTATCAACAGTCGAATCAATTACATTGTAATGTAAAAGCTCCAAG
AAAACATGTTACCGTATCCAATGATAATCAGTCACAGTCACATAATCTAC
TAGATGATGATGAAGATATCAAAGAACAAGTTACAAAGTTTGTTGAAAGC
ATCCCATCACAACTTTGTGATATACTGGTTAAAACTAATCCAGAAGAAGA
AGAGATACAAGCAGTACGTGATTTCATTAATGATTCATTCGAAGATGTTA
TAGTAGATAAACTTCCTGATATTCCAGATCAGATTAACAATTCCAGAAGA
GGTAATATCATACATAATATCATAATAAAGAAAGATCAAGATGTTGAACC
AACAAAGAAACAAATCTATTATTCAACAGATGATCATAAGAGACATGTCG
AAGAAATGGTTATCAAATTTATAGATTTAGGTATTATCAAAAGATCAGAA
TCAAATTACTCATC

est1=SHH579F,1,177
est2=VHB414F,24,587
est3=VHG643F,250,854
est4=CFC606E,362,1588
est5=VHG643Z,1589,2254

kdtti*iisgitvkqrhhniny*wnns*iktpqykllve*qly*chcyn*nnlr*yllsi
k*ykdttikiy*wnns*hililifnylikn*ikln*in*iklyn*im*ik*kn*iiklny
i**ilyiivgeshvinyysfkeshp*sqsvfhrqtcr*sdnclr*cyycsskikkdsssh
*s***nlfn*kh*cirrrsqresakeikdqfd*s*nh*rfkkcchcchlheslyhpllpe
wc*tnledhygqwccik*iisiastypq*is*eqr*n*r*nikeanpp*l*iqdfgsiqn
*lrscqh*ssrsy*ps*lllsprcykkhrshyelpqcn*sgvshpwyc*ssirvskinfr
**ypcfvkdgrtrlvtn*ccnqtqhsnryhrvs*shhrvgs*qc**vlekktfrfciey*
*evsikkescysks*ls*qefl*css**d*scnitrnkkrl*grpqkdkkqfhrlpskqr
llsqlw*ikslhiym*n*SGRCQSQSRSISQKATRLDEGDXSKSKILNK---

---KAKINFPLLDVKEEFVEQINIQVNNEIHNFFIIELDIIDVLFGNDILKDSIINQKDK
IIKLNNSTYKINYQQSNQLHCNVKAPRKHVTVSNDNQSQSHNLLDDDEDIKEQVTKFVES
IPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPDQINNSRRGNIIHNIIIK
KDQDVEPTKKQIYYSTDDHKRHVEEMVIKFIDLGIIKRSESNYS

Frame A:
qrhhniny*wnns*tktpqykllve*qlnkdtti*iisgitvilmpll*lk*fkiifiin
*ii*rhhnknilve*qltyintyi*lfn*kln*iklnkln*ii*lnyvn*ikklnykikl
ylinfiyncw*kschqllliqrkpsvkpkclpppnvplk*qlppmmlllfk*nqkrlfvp
lklmmkfiqlkalmyptskserkcqrnqrpirlklkpltl*kmlpllsss*islpstapr
mvlnqp*rplwtmvlhqmnyfncfnlptmnqlrttiklkvkh*rs*stvtldprlwfhsk
lttklptlk*sklltivtatqpkml*ktskpl*vttm*lircissmvllkfn*si*dqf*
iiisllc*rwsyqtgyklmlqsnstlkpispsvvkpspswfltmlissreedlpilhril
mrsfy*krimllqiitlitgiplmlklirlelqyypk*ektlr*tskr*eavssftvktk
atvsivvnqitphlhvelirsmpkpiqvhqpksnktr*r*xvqvkdfk*---

---esqd*lpatrrqrrvc*tnqyts*q*ns*llyyrigyh*ctfr**yp*glyh*pkr*
nnqve*qyiqn*lstvesitl*cksskktcyriq**svtvt*str***ryqrtsykvc*k
hpittl*ytg*n*srrrrdtsst*fh**firrcysr*ts*ysrsd*qfqkr*yht*yhnk
ersrc*tnketnllfnr*s*etcrrngyqiyrfryyqkiriklli

Frame B:
kdtti*iisgitvkqrhhniny*wnns*iktpqykllve*qly*chcyn*nnlr*yllsi
k*ykdttikiy*wnns*hililifnylikn*ikln*in*iklyn*im*ik*kn*iiklny
i**ilyiivgeshvinyysfkeshp*sqsvfhrqtcr*sdnclr*cyycsskikkdsssh
*s***nlfn*kh*cirrrsqresakeikdqfd*s*nh*rfkkcchcchlheslyhpllpe
wc*tnledhygqwccik*iisiastypq*is*eqr*n*r*nikeanpp*l*iqdfgsiqn
*lrscqh*ssrsy*ps*lllsprcykkhrshyelpqcn*sgvshpwyc*ssirvskinfr
**ypcfvkdgrtrlvtn*ccnqtqhsnryhrvs*shhrvgs*qc**vlekktfrfciey*
*evsikkescysks*ls*qefl*css**d*scnitrnkkrl*grpqkdkkqfhrlpskqr
llsqlw*ikslhiym*n*SGRCQSQSRSISQKATRLDEGDXSKSKILNK---

---KAKINFPLLDVKEEFVEQINIQVNNEIHNFFIIELDIIDVLFGNDILKDSIINQKDK
IIKLNNSTYKINYQQSNQLHCNVKAPRKHVTVSNDNQSQSHNLLDDDEDIKEQVTKFVES
IPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPDQINNSRRGNIIHNIIIK
KDQDVEPTKKQIYYSTDDHKRHVEEMVIKFIDLGIIKRSESNYS

Frame C:
ktpqykllve*qlnkdtti*iisgitvk*rhhniny*wnnsyidaiviikii*dniyyql
nniktpq*kyisgitvniy*ylylii*lkikln*ik*iklnyiiklcklnkkikl*n*ii
fnkfyi*llvkvmssttthskkairkakvsstakraaevttasddaitvqvkskktlrpt
evddeiystestdvsdvevrekvpkksktnsieaktidalknaatavifmnlftihcsqn
gveptlktimdngaasnelfqllqpthnesvknndkiegetlkklihrnfrsktlvpfkt
dyeaantkvveainhrncysaqdviknieaimsyhnvinpvylihgtaevqleylrsild
nnilallkmvvpdwlqtdvaiklntqtditecreaitelvlnnadkfsrrrpsdsasntd
ekfllkknhatpnhnshnrnsfdaqadkiraailpeirkdskvdlkkirssfivyrqnkg
yclncgksnhststcridpvdakanpgpsakkqqdsmkvxspsqrf*i---

---kprltsry*tskksllnksiykltmkfitsll*nwislmyfsvmislrtlsltkkik
*ss*itvhtkliinsrinyivm*klqenmlpypmiishshiiy*mmmkisknklqsllka
shhnfviywlkliqkkkrykqyvislmihskml**inflifqirltipeevisyiis**r
kikmlnqqrnksiiqqmiirdmskkwlsnl*i*vlskdqnqith

Query= Contig-U16568-1 (Contig-U16568-1Q)
/CSM_Contig/Contig-U16568-1Q.Seq.d
         (2264 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16568-1 (Contig-U16568-1Q) /CSM_Contig/Conti...  3661  0.0
Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Conti...   289  9e-78
Contig-U14738-1 (Contig-U14738-1Q) /CSM_Contig/Conti...   270  9e-72
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti...    38  0.058
Contig-U09807-1 (Contig-U09807-1Q) /CSM_Contig/Conti...    38  0.058
Contig-U15696-1 (Contig-U15696-1Q) /CSM_Contig/Conti...    36  0.23
Contig-U15337-1 (Contig-U15337-1Q) /CSM_Contig/Conti...    36  0.23
Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Conti...    36  0.23
Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Conti...    36  0.23
Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Conti...    36  0.23

>Contig-U16568-1 (Contig-U16568-1Q) /CSM_Contig/Contig-U16568-1Q.Seq.d
          Length = 2264

 Score = 3661 bits (1847), Expect = 0.0
 Identities = 1880/1880 (100%)
 Strand = Plus / Plus

                                                                        
Query: 385  tgttggtgaaagtcatgtcatcaactactactcattcaaagaaagccatccgtaaagcca 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385  tgttggtgaaagtcatgtcatcaactactactcattcaaagaaagccatccgtaaagcca 444

                                                                        
Query: 445  aagtgtcttccaccgccaaacgtgccgctgaagtgacaactgcctccgatgatgctatta 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445  aagtgtcttccaccgccaaacgtgccgctgaagtgacaactgcctccgatgatgctatta 504

                                                                        
Query: 505  ctgttcaagtaaaatcaaaaaagactcttcgtcccactgaagttgatgatgaaatttatt 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505  ctgttcaagtaaaatcaaaaaagactcttcgtcccactgaagttgatgatgaaatttatt 564

                                                                        
Query: 565  caactgaaagcactgatgtatccgacgtcgaagtcagagagaaagtgccaaagaaatcaa 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565  caactgaaagcactgatgtatccgacgtcgaagtcagagagaaagtgccaaagaaatcaa 624

                                                                        
Query: 625  agaccaattcgattgaagctaaaaccattgacgctttaaaaaatgctgccactgctgtca 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  agaccaattcgattgaagctaaaaccattgacgctttaaaaaatgctgccactgctgtca 684

                                                                        
Query: 685  tcttcatgaatctctttaccatccactgctcccagaatggtgttgaaccaaccttgaaga 744
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  tcttcatgaatctctttaccatccactgctcccagaatggtgttgaaccaaccttgaaga 744

                                                                        
Query: 745  ccattatggacaatggtgctgcatcaaatgaattatttcaattgcttcaacctacccaca 804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745  ccattatggacaatggtgctgcatcaaatgaattatttcaattgcttcaacctacccaca 804

                                                                        
Query: 805  atgaatcagttaagaacaacgataaaattgaaggtgaaacattaaagaagctaatccacc 864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  atgaatcagttaagaacaacgataaaattgaaggtgaaacattaaagaagctaatccacc 864

                                                                        
Query: 865  gtaactttagatccaagactttggttccattcaaaactgactacgaagctgccaacacta 924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  gtaactttagatccaagactttggttccattcaaaactgactacgaagctgccaacacta 924

                                                                        
Query: 925  aagtagtcgaagctattaaccatcgtaactgctactcagcccaagatgttataaaaaaca 984
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  aagtagtcgaagctattaaccatcgtaactgctactcagcccaagatgttataaaaaaca 984

                                                                        
Query: 985  tcgaagccattatgagttaccacaatgtaattaatccggtgtatctcatccatggtactg 1044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  tcgaagccattatgagttaccacaatgtaattaatccggtgtatctcatccatggtactg 1044

                                                                        
Query: 1045 ctgaagttcaattagagtatctaagatcaattttagataataatatccttgctttgttaa 1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ctgaagttcaattagagtatctaagatcaattttagataataatatccttgctttgttaa 1104

                                                                        
Query: 1105 agatggtcgtaccagactggttacaaactgatgttgcaatcaaactcaacactcaaaccg 1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 agatggtcgtaccagactggttacaaactgatgttgcaatcaaactcaacactcaaaccg 1164

                                                                        
Query: 1165 atatcaccgagtgtcgtgaagccatcaccgagttggttcttaacaatgctgataagttct 1224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 atatcaccgagtgtcgtgaagccatcaccgagttggttcttaacaatgctgataagttct 1224

                                                                        
Query: 1225 cgagaagaagaccttccgattctgcatcgaatactgatgagaagtttctattaaaaaaga 1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 cgagaagaagaccttccgattctgcatcgaatactgatgagaagtttctattaaaaaaga 1284

                                                                        
Query: 1285 atcatgctactccaaatcataactctcataacaggaattcctttgatgctcaagctgata 1344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 atcatgctactccaaatcataactctcataacaggaattcctttgatgctcaagctgata 1344

                                                                        
Query: 1345 agattagagctgcaatattacccgaaataagaaaagactctaaggtagacctcaaaaaga 1404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agattagagctgcaatattacccgaaataagaaaagactctaaggtagacctcaaaaaga 1404

                                                                        
Query: 1405 taagaagcagtttcatcgtttaccgtcaaaacaaaggctactgtctcaattgtggtaaat 1464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 taagaagcagtttcatcgtttaccgtcaaaacaaaggctactgtctcaattgtggtaaat 1464

                                                                        
Query: 1465 caaatcactccacatctacatgtagaattgatccggtcgatgccaaagccaatccaggtc 1524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 caaatcactccacatctacatgtagaattgatccggtcgatgccaaagccaatccaggtc 1524

                                                                        
Query: 1525 catcagccaaaaagcaacaagactcgatgaaggtgatnagtccaagtcaaagattttaaa 1584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 catcagccaaaaagcaacaagactcgatgaaggtgatnagtccaagtcaaagattttaaa 1584

                                                                        
Query: 1585 taaannnnnnnnnngaaagccaagattaacttcccgctactagacgtcaaagaagagttt 1644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 taaannnnnnnnnngaaagccaagattaacttcccgctactagacgtcaaagaagagttt 1644

                                                                        
Query: 1645 gttgaacaaatcaatatacaagttaacaatgaaattcataacttctttattatagaattg 1704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 gttgaacaaatcaatatacaagttaacaatgaaattcataacttctttattatagaattg 1704

                                                                        
Query: 1705 gatatcattgatgtacttttcggtaatgatatccttaaggactctatcattaaccaaaaa 1764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 gatatcattgatgtacttttcggtaatgatatccttaaggactctatcattaaccaaaaa 1764

                                                                        
Query: 1765 gataaaataatcaagttgaataacagtacatacaaaattaattatcaacagtcgaatcaa 1824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 gataaaataatcaagttgaataacagtacatacaaaattaattatcaacagtcgaatcaa 1824

                                                                        
Query: 1825 ttacattgtaatgtaaaagctccaagaaaacatgttaccgtatccaatgataatcagtca 1884
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 ttacattgtaatgtaaaagctccaagaaaacatgttaccgtatccaatgataatcagtca 1884

                                                                        
Query: 1885 cagtcacataatctactagatgatgatgaagatatcaaagaacaagttacaaagtttgtt 1944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 cagtcacataatctactagatgatgatgaagatatcaaagaacaagttacaaagtttgtt 1944

                                                                        
Query: 1945 gaaagcatcccatcacaactttgtgatatactggttaaaactaatccagaagaagaagag 2004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 gaaagcatcccatcacaactttgtgatatactggttaaaactaatccagaagaagaagag 2004

                                                                        
Query: 2005 atacaagcagtacgtgatttcattaatgattcattcgaagatgttatagtagataaactt 2064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 atacaagcagtacgtgatttcattaatgattcattcgaagatgttatagtagataaactt 2064

                                                                        
Query: 2065 cctgatattccagatcagattaacaattccagaagaggtaatatcatacataatatcata 2124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 cctgatattccagatcagattaacaattccagaagaggtaatatcatacataatatcata 2124

                                                                        
Query: 2125 ataaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaacagatgat 2184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 ataaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaacagatgat 2184

                                                                        
Query: 2185 cataagagacatgtcgaagaaatggttatcaaatttatagatttaggtattatcaaaaga 2244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 cataagagacatgtcgaagaaatggttatcaaatttatagatttaggtattatcaaaaga 2244

                                
Query: 2245 tcagaatcaaattactcatc 2264
            ||||||||||||||||||||
Sbjct: 2245 tcagaatcaaattactcatc 2264


 Score =  278 bits (140), Expect = 4e-74
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60

                                                                       
Query: 61  aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 120

                               
Query: 121 acagttatattgatgccatt 140
           ||||||||||||||||||||
Sbjct: 121 acagttatattgatgccatt 140


 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 agacaccacaataaaaatatattagtggaataacag 228


 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 41/43 (95%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                      
Query: 86  ataaagacaccacaatataaat-tattagtggaataacagtta 127
           ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 189 ataaagacaccacaataaaaatatattagtggaataacagtta 231


 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 45  aaagacaccacaatataaat-tattagtggaataacagttaa 85
           ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 191 aaagacaccacaataaaaatatattagtggaataacagttaa 232


 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 2   aaagacaccacaatataaat-tattagtggaataacagttaa 42
           ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 191 aaagacaccacaataaaaatatattagtggaataacagttaa 232


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 47  agacaccacaatataaat-tattagtggaataacag 81


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 90  agacaccacaatataaat-tattagtggaataacag 124


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 4   agacaccacaatataaat-tattagtggaataacag 38


>Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Contig-U16571-1Q.Seq.d
          Length = 4599

 Score =  289 bits (146), Expect = 9e-78
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2119 atcataataaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaaca 2178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 atcataataaagaaagatcaagatgttgaaccaacaaagaaacaaatctattattcaaca 1297

                                                                        
Query: 2179 gatgatcataagagacatgtcgaagaaatggttatcaaatttatagatttaggtattatc 2238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 gatgatcataagagacatgtcgaagaaatggttatcaaatttatagatttaggtattatc 1357

                                      
Query: 2239 aaaagatcagaatcaaattactcatc 2264
            ||||||||||||||||||||||||||
Sbjct: 1358 aaaagatcagaatcaaattactcatc 1383


>Contig-U14738-1 (Contig-U14738-1Q) /CSM_Contig/Contig-U14738-1Q.Seq.d
          Length = 618

 Score =  270 bits (136), Expect = 9e-72
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 195

                                                                       
Query: 61  aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 255

                           
Query: 121 acagttatattgatgc 136
           ||||||||||||||||
Sbjct: 256 acagttatattgatgc 271


 Score =  159 bits (80), Expect = 2e-38
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                       
Query: 385 tgttggtgaaagtcatgtcatcaactactactcattcaaagaaagccatccgtaaagcca 444
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 514 tgttggtgaaagtcatgtcatcaactactactccttcaaagaaagccatccgtaaagcca 573

                                       
Query: 445 aagtgtcttccaccgccaaacgtgccgc 472
           ||| ||||||||||||||||||||||||
Sbjct: 574 aagcgtcttccaccgccaaacgtgccgc 601


 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||||||||||||||||||||||||||
Sbjct: 327 agacaccacaataaaaatatattagtggaataacag 362


 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 41/43 (95%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                      
Query: 86  ataaagacaccacaatataaat-tattagtggaataacagtta 127
           ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 323 ataaagacaccacaataaaaatatattagtggaataacagtta 365


 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 45  aaagacaccacaatataaat-tattagtggaataacagttaa 85
           ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 325 aaagacaccacaataaaaatatattagtggaataacagttaa 366


 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                     
Query: 2   aaagacaccacaatataaat-tattagtggaataacagttaa 42
           ||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 325 aaagacaccacaataaaaatatattagtggaataacagttaa 366


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 182 agacaccacaatataaat-tattagtggaataacag 216


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 225 agacaccacaatataaat-tattagtggaataacag 259


 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 193 agacaccacaataaaaatatattagtggaataacag 228
           ||||||||||||| |||| |||||||||||||||||
Sbjct: 139 agacaccacaatataaat-tattagtggaataacag 173


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,054
Number of Sequences: 8402
Number of extensions: 33054
Number of successful extensions: 3111
Number of sequences better than 10.0: 108
length of query: 2264
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2247
effective length of database: 7,932,708
effective search space: 17824794876
effective search space used: 17824794876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

Query= Contig-U16568-1 (Contig-U16568-1Q) /CSM_Contig/Contig-U16568-1Q.Seq.d
         (2264 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF049230) Dictyostelium discoideum LTR-retrotransposon Skip...  2179   0.0    2
(AF017040) Dictyostelium discoideum LTR-retrotransposon Skip...  2179   0.0    2
(FJ387222) Dictyostelium discoideum chromosome 3 centromere ...  2131   0.0    2
(FJ387223) Dictyostelium discoideum chromosome 2 C2 outer ce...  1612   0.0    1
(BJ376249) Dictyostelium discoideum cDNA clone:ddc21b23, 3' ...  1429   0.0    1
(BJ374245) Dictyostelium discoideum cDNA clone:ddc6k02, 3' e...  1405   0.0    2
(BJ360444) Dictyostelium discoideum cDNA clone:ddc6k02, 5' e...  1322   0.0    1
(BJ408772) Dictyostelium discoideum cDNA clone:dds46l20, 3' ...  1310   0.0    1
(BJ405404) Dictyostelium discoideum cDNA clone:dds31g15, 3' ...  1308   0.0    3
(BJ445989) Dictyostelium discoideum cDNA clone:ddv61e08, 3' ...  1306   0.0    1
(BJ409201) Dictyostelium discoideum cDNA clone:dds39m19, 3' ...  1306   0.0    1
(BJ352155) Dictyostelium discoideum cDNA clone:dda45g23, 3' ...  1306   0.0    1
(BJ400602) Dictyostelium discoideum cDNA clone:dds13o24, 3' ...  1285   0.0    1
(FJ387224) Dictyostelium discoideum chromosome 2 C2 inner ce...  1279   0.0    1
(BJ440638) Dictyostelium discoideum cDNA clone:ddv44e12, 3' ...  1267   0.0    2
(BJ408022) Dictyostelium discoideum cDNA clone:dds44n12, 3' ...  1241   0.0    2
(BJ405570) Dictyostelium discoideum cDNA clone:dds32l02, 3' ...  1195   0.0    3
(BJ442330) Dictyostelium discoideum cDNA clone:ddv49e14, 3' ...  1183   0.0    2
(BJ335927) Dictyostelium discoideum cDNA clone:dda52h01, 5' ...  1166   0.0    1
(BJ337707) Dictyostelium discoideum cDNA clone:dda58n09, 5' ...  1162   0.0    1
(BJ344211) Dictyostelium discoideum cDNA clone:dda18d19, 3' ...  1156   0.0    2
(BJ335933) Dictyostelium discoideum cDNA clone:dda52i03, 5' ...  1154   0.0    1
(BJ331391) Dictyostelium discoideum cDNA clone:dda35l03, 5' ...  1150   0.0    1
(BJ352521) Dictyostelium discoideum cDNA clone:dda47d03, 3' ...  1146   0.0    4
(BJ335906) Dictyostelium discoideum cDNA clone:dda52b02, 5' ...  1134   0.0    1
(BJ396773) Dictyostelium discoideum cDNA clone:dds43l20, 5' ...  1132   0.0    1
(BJ388317) Dictyostelium discoideum cDNA clone:dds8o23, 5' e...  1130   0.0    1
(BJ425805) Dictyostelium discoideum cDNA clone:ddv56l21, 5' ...  1128   0.0    1
(BJ426846) Dictyostelium discoideum cDNA clone:ddv60n12, 5' ...  1088   0.0    1
(BJ394684) Dictyostelium discoideum cDNA clone:dds36j06, 5' ...  1086   0.0    1
(BJ334854) Dictyostelium discoideum cDNA clone:dda48e04, 5' ...  1084   0.0    1
(BJ428916) Dictyostelium discoideum cDNA clone:ddv1p14, 3' e...  1007   0.0    4
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...   835   0.0    3
(BJ427103) Dictyostelium discoideum cDNA clone:ddv61e08, 5' ...  1059   0.0    1
(BJ410749) Dictyostelium discoideum cDNA clone:ddv1p14, 5' e...  1043   0.0    1
(BJ334577) Dictyostelium discoideum cDNA clone:dda47d03, 5' ...  1025   0.0    1
(BJ331425) Dictyostelium discoideum cDNA clone:dda35f10, 5' ...  1021   0.0    1
(BJ391451) Dictyostelium discoideum cDNA clone:dds13o24, 5' ...   789   0.0    2
(BJ337330) Dictyostelium discoideum cDNA clone:dda57f02, 5' ...   981   0.0    1
(BJ330784) Dictyostelium discoideum cDNA clone:dda32b21, 5' ...   979   0.0    1
(BJ339578) Dictyostelium discoideum cDNA clone:dda65h23, 5' ...   977   0.0    1
(BJ421082) Dictyostelium discoideum cDNA clone:ddv41m13, 5' ...   975   0.0    1
(BJ420588) Dictyostelium discoideum cDNA clone:ddv39c24, 5' ...   973   0.0    1
(BJ397441) Dictyostelium discoideum cDNA clone:dds46f10, 5' ...   971   0.0    1
(BJ334298) Dictyostelium discoideum cDNA clone:dda45g23, 5' ...   948   0.0    1
(AU053388) Dictyostelium discoideum slug cDNA, clone SLI533.      888   0.0    2
(BJ396741) Dictyostelium discoideum cDNA clone:dds43d20, 5' ...   932   0.0    1
(BJ421932) Dictyostelium discoideum cDNA clone:ddv44e12, 5' ...   930   0.0    1
(AU052963) Dictyostelium discoideum slug cDNA, clone SLF390.      862   0.0    2
(BJ362433) Dictyostelium discoideum cDNA clone:ddc21b23, 5' ...   914   0.0    1
(BJ395373) Dictyostelium discoideum cDNA clone:dds38k16, 5' ...   908   0.0    1
(BJ331367) Dictyostelium discoideum cDNA clone:dda35f01, 5' ...   908   0.0    1
(AU034331) Dictyostelium discoideum slug cDNA, clone SLC703.      904   0.0    1
(BJ334333) Dictyostelium discoideum cDNA clone:dda45p20, 5' ...   890   0.0    1
(BJ369303) Dictyostelium discoideum cDNA clone:ddc50e05, 5' ...   884   0.0    1
(AU033465) Dictyostelium discoideum slug cDNA, clone SLA861.      811   0.0    2
(AU052394) Dictyostelium discoideum slug cDNA, clone SLD246.      797   0.0    2
(BJ396147) Dictyostelium discoideum cDNA clone:dds41e15, 5' ...   848   0.0    1
(BJ392088) Dictyostelium discoideum cDNA clone:dds26h07, 5' ...   805   0.0    2
(BJ424847) Dictyostelium discoideum cDNA clone:ddv53d21, 5' ...   827   0.0    1
(BJ443035) Dictyostelium discoideum cDNA clone:ddv51p13, 3' ...   815   0.0    1
(AU052877) Dictyostelium discoideum slug cDNA, clone SLF252.      749   0.0    2
(BJ334537) Dictyostelium discoideum cDNA clone:dda46g21, 5' ...   783   0.0    1
(BJ395998) Dictyostelium discoideum cDNA clone:dds41a03, 5' ...   781   0.0    1
(BJ334092) Dictyostelium discoideum cDNA clone:dda45h06, 5' ...   688   0.0    2
(BJ331745) Dictyostelium discoideum cDNA clone:dda36l24, 5' ...   676   0.0    1
(BJ425644) Dictyostelium discoideum cDNA clone:ddv56k12, 5' ...   666   0.0    1
(AU266155) Dictyostelium discoideum vegetative cDNA clone:VS...   597   0.0    2
(BJ397665) Dictyostelium discoideum cDNA clone:dds47j06, 5' ...   646   0.0    1
(AU053368) Dictyostelium discoideum slug cDNA, clone SLI474.      541   e-165  2
(AU053105) Dictyostelium discoideum slug cDNA, clone SLF693.      527   e-163  2
(BJ333258) Dictyostelium discoideum cDNA clone:dda42d03, 5' ...   555   e-153  1
(BJ418551) Dictyostelium discoideum cDNA clone:ddv33l04, 5' ...   402   e-151  4
(BJ337546) Dictyostelium discoideum cDNA clone:dda57h24, 5' ...   490   e-149  2
(BJ332995) Dictyostelium discoideum cDNA clone:dda41j01, 5' ...   444   e-138  2
(BJ334053) Dictyostelium discoideum cDNA clone:dda44p19, 5' ...   432   e-134  2
(BJ360081) Dictyostelium discoideum cDNA clone:ddc4k04, 5' e...   478   e-130  1
(BJ444229) Dictyostelium discoideum cDNA clone:ddv55n18, 3' ...   311   e-118  3
(BJ349867) Dictyostelium discoideum cDNA clone:dda37l20, 3' ...   430   e-115  1
(AU039637) Dictyostelium discoideum slug cDNA, clone SLE880.      363   e-113  2
(AU039873) Dictyostelium discoideum slug cDNA, clone SLG630.      351   e-110  2
(BJ334467) Dictyostelium discoideum cDNA clone:dda46d17, 5' ...   410   e-110  1
(BJ429508) Dictyostelium discoideum cDNA clone:ddv3b22, 3' e...   270   e-106  2
(BJ384600) Dictyostelium discoideum cDNA clone:ddc50e05, 3' ...   190   e-104  3
(AU266156) Dictyostelium discoideum vegetative cDNA clone:VS...   325   e-102  2
(BJ327753) Dictyostelium discoideum cDNA clone:dda21k14, 5' ...   317   1e-81  1
(BJ396087) Dictyostelium discoideum cDNA clone:dds41f10, 5' ...   280   2e-70  1
(BJ330470) Dictyostelium discoideum cDNA clone:dda31m16, 5' ...   264   1e-65  1
(BJ391538) Dictyostelium discoideum cDNA clone:dds24e12, 5' ...   262   5e-65  1
(BJ418803) Dictyostelium discoideum cDNA clone:ddv34f06, 5' ...   252   5e-62  1
(BJ393509) Dictyostelium discoideum cDNA clone:dds31g15, 5' ...   252   5e-62  1
(BJ326994) Dictyostelium discoideum cDNA clone:dda18d19, 5' ...   252   5e-62  1
(AU266406) Dictyostelium discoideum vegetative cDNA clone:VS...   236   3e-57  1
(BJ333059) Dictyostelium discoideum cDNA clone:dda41g12, 5' ...   214   1e-50  1
(BJ330696) Dictyostelium discoideum cDNA clone:dda32n10, 5' ...   210   2e-49  1
(BJ386714) Dictyostelium discoideum cDNA clone:dds10b09, 5' ...   149   2e-49  2
(BJ364550) Dictyostelium discoideum cDNA clone:ddc32j01, 5' ...   198   7e-46  1
(BJ373818) Dictyostelium discoideum cDNA clone:ddc4k04, 3' e...   182   4e-41  1
(BJ327097) Dictyostelium discoideum cDNA clone:dda19k02, 5' ...   182   4e-41  1
(BJ327096) Dictyostelium discoideum cDNA clone:dda19k01, 5' ...   182   4e-41  1
(BJ423973) Dictyostelium discoideum cDNA clone:ddv51b04, 5' ...   119   1e-40  2
(BJ391872) Dictyostelium discoideum cDNA clone:dds25c16, 5' ...   178   6e-40  1
(BJ444604) Dictyostelium discoideum cDNA clone:ddv56l21, 3' ...   172   4e-38  1
(BJ446576) Dictyostelium discoideum cDNA clone:ddv63l04, 3' ...    84   2e-32  3
(U63602) Dictyostelium discoideum Tdd-4 transposable element...   137   2e-27  1
(BJ424349) Dictyostelium discoideum cDNA clone:ddv52l05, 5' ...   129   5e-25  1
(BJ331820) Dictyostelium discoideum cDNA clone:dda36p01, 5' ...    82   2e-19  2
(BJ335829) Dictyostelium discoideum cDNA clone:dda51o18, 5' ...   103   3e-17  1
(BJ395721) Dictyostelium discoideum cDNA clone:dds39m19, 5' ...   100   2e-16  3
(BJ335783) Dictyostelium discoideum cDNA clone:dda51d18, 5' ...   100   5e-16  1
(AU267513) Dictyostelium discoideum vegetative cDNA clone:VS...    82   1e-10  1
(AU267490) Dictyostelium discoideum vegetative cDNA clone:VS...    82   1e-10  1
(BJ421737) Dictyostelium discoideum cDNA clone:ddv43l17, 5' ...    82   1e-10  1
(AU267514) Dictyostelium discoideum vegetative cDNA clone:VS...    78   2e-09  1
(AU267491) Dictyostelium discoideum vegetative cDNA clone:VS...    78   2e-09  1
(BJ370405) Dictyostelium discoideum cDNA clone:ddc54d01, 5' ...    78   2e-09  1
(BJ395134) Dictyostelium discoideum cDNA clone:dds37c20, 5' ...    52   0.096  1
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    28   0.17   3
(AC164772) Bos taurus clone CH240-155I12, *** SEQUENCING IN ...    36   0.23   2
(EJ434533) 1093015272942 Global-Ocean-Sampling_GS-28-01-01-1...    28   0.25   3
(EK468369) 1095469437091 Global-Ocean-Sampling_GS-32-01-01-1...    28   0.25   3
(CJ760344) Ipomoea nil cDNA clone:jmsf22l24, 3' end.               50   0.38   1
(AL984221) Danio rerio genomic clone DKEY-43O19, genomic sur...    38   0.53   3
(BZ396809) EINBW54TF EI_10_12_KB Entamoeba invadens genomic ...    32   0.61   3
(CC851663) NDL.36F3.T7 Notre Dame Liverpool Aedes aegypti ge...    32   0.62   3
(BZ388163) EINAT43TF EI_10_12_KB Entamoeba invadens genomic ...    32   0.81   3
(AC180533) Strongylocentrotus purpuratus clone R3-3098H19, W...    46   0.82   3
(BZ390821) EINAV35TR EI_10_12_KB Entamoeba invadens genomic ...    32   0.83   3
(CT030733) Mouse DNA sequence from clone RP23-353G11 on chro...    48   1.5    1
(AC160119) Mus musculus BAC clone RP23-431F16 from chromosom...    48   1.5    1
(AC127422) Mus musculus BAC clone RP24-383K20 from chromosom...    48   1.5    1
(CE186856) tigr-gss-dog-17000326817741 Dog Library Canis lup...    48   1.5    1
(DI039115) PROBE FOR DIAGNOSING INFECTIOUS DISEASE..               34   2.0    4
(CS610192) Sequence 1 from Patent EP1795594.                       34   2.0    4
(CQ986404) Sequence 2 from Patent EP1498496.                       34   2.0    4
(CQ986381) Sequence 2 from Patent EP1498495.                       34   2.0    4
(BD186427) Improved method of detecting and identifying micr...    34   2.0    4
(BD186408) Method for evaluating function by phagocyte and u...    34   2.0    4
(AX801840) Sequence 2 from Patent EP1329518.                       34   2.0    4
(AX801817) Sequence 2 from Patent EP1329520.                       34   2.0    4
(AX801794) Sequence 2 from Patent EP1329519.                       34   2.0    4
(AX347546) Sequence 2 from Patent EP1160334.                       34   2.0    4
(AX347523) Sequence 2 from Patent EP1167544.                       34   2.0    4
(AX347500) Sequence 2 from Patent EP1167542.                       34   2.0    4
(AX343048) Sequence 2 from Patent EP1167543.                       34   2.0    4
(AR068482) Sequence 2 from patent US 5853998.                      34   2.0    4
(AR038635) Sequence 2 from patent US 5807673.                      34   2.0    4
(AR025178) Sequence 2 from patent US 5798211.                      34   2.0    4
(AR012053) Sequence 2 from patent US 5763188.                      34   2.0    4
(AM659963) Entamoeba moshkovskii FIC GSS, clone mosh093d12.q1k.    42   2.3    3
(CT977543) Equus caballus GSS, BAC clone CH241-61I13, T7 end...    32   3.9    2
(CU158000) Equus caballus GSS, BAC clone CH241-290E3, SP6 en...    32   4.0    2
(CU158543) Equus caballus GSS, BAC clone CH241-296H20, T7 en...    32   4.0    2
(CU138556) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.9    1
(AC214872) Callithrix jacchus clone CH259-248M19, WORKING DR...    46   5.9    1
(AC214313) Equus caballus clone CH241-385C2, WORKING DRAFT S...    46   5.9    1
(AC207146) Callithrix jacchus clone CH259-163H8, WORKING DRA...    46   5.9    1
(AC205435) Equus caballus clone CH241-333H4, WORKING DRAFT S...    46   5.9    1
(CT219052) Sus scrofa genomic clone PigE-234L4, genomic surv...    46   5.9    1
(DY293083) IC0AAA81DC05RM1 CitNFL Citrus clementina cDNA 5',...    46   5.9    1
(FC908906) IC0AAA81DC05RM1 IVIA1 Citrus clementina cDNA clon...    46   5.9    1
(EI388127) POTBG33TF Solanum tuberosum RHPOTKEY BAC ends Sol...    36   6.7    2
(AF430393) Penaeus esculentus microsatellite CSGES218 sequence.    40   6.8    2
(CW214729) 104_646_11194166_148_37055_051 Sorghum methylatio...    34   8.5    3

>(AF049230) Dictyostelium discoideum LTR-retrotransposon Skipper, Gag
            (gag) gene, complete cds; and Pro (pro) and Pol (pol)
            genes, partial cds.
          Length = 6998

 Score = 2179 bits (1099), Expect(2) = 0.0
 Identities = 1144/1159 (98%)
 Strand = Plus / Plus


Query: 386  gttggtgaaagtcatgtcatcaactactactcattcaaagaaagccatccgtaaagccaa 445
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1119 gttggtgaaagtcatgtcatcaactactactccttcaaagaaagccatccgtaaagccaa 1178


Query: 446  agtgtcttccaccgccaaacgtgccgctgaagtgacaactgcctccgatgatgctattac 505
            ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 1179 agtgtcttccaccgccaaacgtgccactgaagtgacaaccgcctccgatgatgctattac 1238


Query: 506  tgttcaagtaaaatcaaaaaagactcttcgtcccactgaagttgatgatgaaatttattc 565
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1239 tgttcaagtaaaatcaaaaaagactcttcgtcccactgaagtcgatgatgaaatttattc 1298


Query: 566  aactgaaagcactgatgtatccgacgtcgaagtcagagagaaagtgccaaagaaatcaaa 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 aactgaaagcactgatgtatccgacgtcgaagtcagagagaaagtgccaaagaaatcaaa 1358


Query: 626  gaccaattcgattgaagctaaaaccattgacgctttaaaaaatgctgccactgctgtcat 685
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 gaccaattccattgaagctaaaaccattgacgctttaaaaaatgctgccactgctgtcat 1418


Query: 686  cttcatgaatctctttaccatccactgctcccagaatggtgttgaaccaaccttgaagac 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 cttcatgaatctctttaccatccactgctcccagaatggtgttgaaccaaccttgaagac 1478


Query: 746  cattatggacaatggtgctgcatcaaatgaattatttcaattgcttcaacctacccacaa 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 cattatggacaatggtgctgcatcaaatgaattatttcaattgcttcaacctacccacaa 1538


Query: 806  tgaatcagttaagaacaacgataaaattgaaggtgaaacattaaagaagctaatccaccg 865
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1539 tgaatcagttaagaacaacgataaaattgaaggtgaaacattgaagaagctaatacaccg 1598


Query: 866  taactttagatccaagactttggttccattcaaaactgactacgaagctgccaacactaa 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 taactttagatccaagactttggttccattcaaaactgactacgaagctgccaacactaa 1658


Query: 926  agtagtcgaagctattaaccatcgtaactgctactcagcccaagatgttataaaaaacat 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 agtagtcgaagctattaaccatcgtaactgctactcagcccaagatgttataaaaaacat 1718


Query: 986  cgaagccattatgagttaccacaatgtaattaatccggtgtatctcatccatggtactgc 1045
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1719 cgaagccattatgagttaccacaatgtaattaatccggtgtatctaatccatggtactgc 1778


Query: 1046 tgaagttcaattagagtatctaagatcaattttagataataatatccttgctttgttaaa 1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tgaagttcaattagagtatctaagatcaattttagataataatatccttgctttgttaaa 1838


Query: 1106 gatggtcgtaccagactggttacaaactgatgttgcaatcaaactcaacactcaaaccga 1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 gatggtcgtaccagactggttacaaactgatgttgcaatcaaactcaacactcaaaccga 1898


Query: 1166 tatcaccgagtgtcgtgaagccatcaccgagttggttcttaacaatgctgataagttctc 1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 tatcaccgagtgtcgtgaagccatcaccgagttggttcttaacaatgctgataagttctc 1958


Query: 1226 gagaagaagaccttccgattctgcatcgaatactgatgagaagtttctattaaaaaagaa 1285
            ||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 1959 gagaagaagaccttccgattccgcatcgaataatgatgagaagtttccattaaaaaagaa 2018


Query: 1286 tcatgctactccaaatcataactctcataacaggaattcctttgatgctcaagctgataa 1345
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2019 tcatgctactccaaatcataactctcataacaggaattcctttgatgcacaagctgataa 2078


Query: 1346 gattagagctgcaatattacccgaaataagaaaagactctaaggtagacctcaaaaagat 1405
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 gattagagctgcaatattacctgaaataagaaaagactctaaggtagacctcaaaaagat 2138


Query: 1406 aagaagcagtttcatcgtttaccgtcaaaacaaaggctactgtctcaattgtggtaaatc 1465
            ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 2139 aagaagcagtttcatcgtttaccgtcagagcaaaggctactgtctcaattgtggtaaatc 2198


Query: 1466 aaatcactccacatctacatgtagaattgatccggtcgatgccaaagccaatccaggtcc 1525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 aaatcactccacatctacatgtagaattgatccggtcgatgccaaagccaatccaggtcc 2258


Query: 1526 atcagccaaaaagcaacaa 1544
            |||||||||||||||||||
Sbjct: 2259 atcagccaaaaagcaacaa 2277

 Score =  771 bits (389), Expect(2) = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Plus


Query: 1868 ccaatgataatcagtcacagtcacataatctactagatgatgatgaagatatcaaagaac 1927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3243 ccaatgataatcagtcacagtcacataatctactagatgatgatgaagatatcaaagaac 3302


Query: 1928 aagttacaaagtttgttgaaagcatcccatcacaactttgtgatatactggttaaaacta 1987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3303 aagttacaaagtttgttgaaagcatcccatcacaactttgtgatatactggttaaaacta 3362


Query: 1988 atccagaagaagaagagatacaagcagtacgtgatttcattaatgattcattcgaagatg 2047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 atccagaagaagaagagatacaagcagtacgtgatttcattaatgattcattcgaagatg 3422


Query: 2048 ttatagtagataaacttcctgatattccagatcagattaacaattccagaagaggtaata 2107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 ttatagtagataaacttcctgatattccagatcagattaacaattccagaagaggtaata 3482


Query: 2108 tcatacataatatcataataaagaaagatcaagatgttgaaccaacaaagaaacaaatct 2167
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 tcatacataatatcatattaaagaaagatcaagatgttgaaccaacaaagaaacaaatct 3542


Query: 2168 attattcaacagatgatcataagagacatgtcgaagaaatggttatcaaatttatagatt 2227
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3543 attattcaacagatgatcataagagacatgtcgaagaaatggttctcaaatttatagatt 3602


Query: 2228 taggtattatcaaaagatcagaatcaaattactcatc 2264
            |||||||||||||||||||||||||||||||||||||
Sbjct: 3603 taggtattatcaaaagatcagaatcaaattactcatc 3639

 Score =  535 bits (270), Expect(2) = 0.0
 Identities = 270/270 (100%)
 Strand = Plus / Plus


Query: 1600 aaagccaagattaacttcccgctactagacgtcaaagaagagtttgttgaacaaatcaat 1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 aaagccaagattaacttcccgctactagacgtcaaagaagagtttgttgaacaaatcaat 3033


Query: 1660 atacaagttaacaatgaaattcataacttctttattatagaattggatatcattgatgta 1719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 atacaagttaacaatgaaattcataacttctttattatagaattggatatcattgatgta 3093


Query: 1720 cttttcggtaatgatatccttaaggactctatcattaaccaaaaagataaaataatcaag 1779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3094 cttttcggtaatgatatccttaaggactctatcattaaccaaaaagataaaataatcaag 3153


Query: 1780 ttgaataacagtacatacaaaattaattatcaacagtcgaatcaattacattgtaatgta 1839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3154 ttgaataacagtacatacaaaattaattatcaacagtcgaatcaattacattgtaatgta 3213


Query: 1840 aaagctccaagaaaacatgttaccgtatcc 1869
            ||||||||||||||||||||||||||||||
Sbjct: 3214 aaagctccaagaaaacatgttaccgtatcc 3243

 Score = 81.8 bits (41), Expect(2) = 0.0
 Identities = 43/44 (97%)
 Strand = Plus / Plus


Query: 1545 gactcgatgaaggtgatnagtccaagtcaaagattttaaataaa 1588
            ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2279 gactcgatgaaggtgatgagtccaagtcaaagattttaaataaa 2322

 Score =  280 bits (141), Expect = 2e-70
 Identities = 141/141 (100%)
 Strand = Plus / Plus


Query: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 793


Query: 61  aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 853


Query: 121 acagttatattgatgccattg 141
           |||||||||||||||||||||
Sbjct: 854 acagttatattgatgccattg 874

 Score =  244 bits (123), Expect = 1e-59
 Identities = 126/127 (99%)
 Strand = Plus / Plus


Query: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 750


Query: 61  aaattattagtggaataacagttaaataaagacaccacaatataaattattagtggaata 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 751 aaattattagtggaataacagttaaacaaagacaccacaatataaattattagtggaata 810


Query: 121 acagtta 127
           |||||||
Sbjct: 811 acagtta 817

 Score =  159 bits (80), Expect(3) = 1e-37
 Identities = 83/84 (98%)
 Strand = Plus / Plus


Query: 1   caaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 777 caaagacaccacaatataaattattagtggaataacagttaaataaagacaccacaatat 836


Query: 61  aaattattagtggaataacagtta 84
           ||||||||||||||||||||||||
Sbjct: 837 aaattattagtggaataacagtta 860

 Score = 40.1 bits (20), Expect(3) = 1e-37
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 108 tattagtggaataacagtta 127
           ||||||||||||||||||||
Sbjct: 945 tattagtggaataacagtta 964

 Score = 30.2 bits (15), Expect(3) = 1e-37
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 86  ataaagacaccacaa 100
           |||||||||||||||
Sbjct: 922 ataaagacaccacaa 936

 Score =  161 bits (81), Expect = 1e-34
 Identities = 84/85 (98%)
 Strand = Plus / Plus


Query: 43  acaaagacaccacaatataaattattagtggaataacagttaaataaagacaccacaata 102
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 690 acaaagacaccacaatataaattattagtggaataacagttaaacaaagacaccacaata 749


Query: 103 taaattattagtggaataacagtta 127
           |||||||||||||||||||||||||
Sbjct: 750 taaattattagtggaataacagtta 774

 Score = 79.8 bits (40), Expect(3) = 9e-14
 Identities = 40/40 (100%)
 Strand = Plus / Plus


Query: 2   aaagacaccacaatataaattattagtggaataacagtta 41
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aaagacaccacaatataaattattagtggaataacagtta 860

 Score = 42.1 bits (21), Expect(3) = 9e-14
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 65  tattagtggaataacagttaa 85
           |||||||||||||||||||||
Sbjct: 945 tattagtggaataacagttaa 965

 Score = 26.3 bits (13), Expect(3) = 9e-14
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 45  aaagacaccacaa 57
           |||||||||||||
Sbjct: 924 aaagacaccacaa 936

 Score = 79.8 bits (40), Expect = 4e-10
 Identities = 40/40 (100%)
 Strand = Plus / Plus


Query: 88  aaagacaccacaatataaattattagtggaataacagtta 127
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aaagacaccacaatataaattattagtggaataacagtta 731

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 2,443,981,612
Number of extensions: 145894628
Number of successful extensions: 11373177
Number of sequences better than 10.0: 164
Length of query: 2264
Length of database: 101,790,757,118
Length adjustment: 25
Effective length of query: 2239
Effective length of database: 99,238,119,368
Effective search space: 222194149264952
Effective search space used: 222194149264952
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

Query= Contig-U16568-1 (Contig-U16568-1Q) /CSM_Contig/Contig-U16568-1Q.Seq.d
         (2264 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017040_1(AF017040|pid:none) Dictyostelium discoideum LTR-retro...   740   0.0
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro...   263   2e-68
AF017040_2(AF017040|pid:none) Dictyostelium discoideum LTR-retro...   182   6e-44
AE014188_199(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.044
CP001047_351(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    42   0.098
CR382131_591(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    42   0.098
AJ746250_2(AJ746250|pid:none) Yarrowia lipolytica retrotransposo...    42   0.098
AF031904_2(AF031904|pid:none) Plasmodium berghei nucleosome asse...    42   0.13
CP001357_1378(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    41   0.17
CP000743_812(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    41   0.22
FN357821_5(FN357821|pid:none) Schistosoma mansoni genome sequenc...    40   0.29
AE014185_316(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.29
CR382125_227(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    40   0.37
AM422018_68(AM422018|pid:none) Candidatus Phytoplasma australien...    40   0.49
AE014187_162(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.64
FN357486_13(FN357486|pid:none) Schistosoma mansoni genome sequen...    39   0.83
CP000976_77(CP000976|pid:none) Borrelia duttonii Ly, complete ge...    39   0.83
AY523538_1(AY523538|pid:none) Sweet potato feathery mottle virus...    39   0.83
CP000922_2603(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    39   0.83
AF461542_1(AF461542|pid:none) Clostridium botulinum strain NCTC ...    39   1.1
CP000393_1014(CP000393|pid:none) Trichodesmium erythraeum IMS101...    39   1.1
AE001362_116(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    39   1.1
CP000123_556(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    39   1.1
AP008207_3561(AP008207|pid:none) Oryza sativa (japonica cultivar...    39   1.1
AL606630_1(AL606630|pid:none) Oryza sativa genomic DNA, chromoso...    38   1.4
CP001056_1435(CP001056|pid:none) Clostridium botulinum B str. Ek...    38   1.4
AY216505_1(AY216505|pid:none) Pirital virus strain VAV-488 segme...    38   1.4
CP000606_1313(CP000606|pid:none) Shewanella loihica PV-4, comple...    38   1.4
AP009608_821(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    38   1.4
AF361075_4(AF361075|pid:none) Canine herpesvirus virion protein ...    38   1.9
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    38   1.9
AL844506_134(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.9
(Q10267) RecName: Full=Uncharacterized protein C13G7.03;  &CU329...    37   2.4
DQ011582_1(DQ011582|pid:none) Plasmodium cynomolgi Mulligan reti...    37   2.4
(Q2T9I5) RecName: Full=RNA-binding protein 26; AltName: Full=RNA...    37   2.4
AL844508_302(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.4
CP000123_430(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    37   2.4
AE014187_100(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   3.2
AM910992_217(AM910992|pid:none) Plasmodium knowlesi strain H chr...    37   3.2
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay...    37   3.2
(Q6RSS2) RecName: Full=RNA-directed RNA polymerase;          EC=...    37   3.2
CP001033_72(CP001033|pid:none) Streptococcus pneumoniae CGSP14, ...    37   3.2
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    37   3.2
CP001015_72(CP001015|pid:none) Streptococcus pneumoniae G54, com...    37   3.2
FM992695_278(FM992695|pid:none) Candida dubliniensis CD36 chromo...    37   3.2
AP008955_1333(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    37   4.1
CR855237_8(CR855237|pid:none) Oryza sativa genomic DNA, chromoso...    37   4.1
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    37   4.1
AB093210_1(AB093210|pid:none) Mus musculus mRNA for mKIAA0071 pr...    37   4.1
BC042731_1(BC042731|pid:none) Mus musculus REST corepressor 1, m...    37   4.1
CR548612_233(CR548612|pid:none) Paramecium tetraurelia macronucl...    37   4.1
BA000032_800(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    37   4.1
BX538350_20(BX538350|pid:none) Cryptosporidium parvum chromosome...    36   5.4
AE014185_144(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.4
AM180355_688(AM180355|pid:none) Clostridium difficile 630 comple...    36   5.4
AL844509_266(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.4
AY523552_1(AY523552|pid:none) Sweet potato feathery mottle virus...    36   5.4
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.4
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    36   5.4
AE005672_72(AE005672|pid:none) Streptococcus pneumoniae TIGR4, c...    36   5.4
EF107099_48(EF107099|pid:none) Uncultured marine bacterium EB0_4...    36   5.4
CP000102_112(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    36   5.4
CP000414_1331(CP000414|pid:none) Leuconostoc mesenteroides subsp...    36   5.4
CP000123_496(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    36   5.4
AL035477_11(AL035477|pid:none) Plasmodium falciparum MAL4P4.           36   5.4
AY465057_1(AY465057|pid:none) Cryptosporidium parvum chromosome ...    36   5.4
AF530470_1(AF530470|pid:none) Antheraea mylitta Tamy retrotransp...    36   5.4
CP000918_131(CP000918|pid:none) Streptococcus pneumoniae 70585, ...    36   5.4
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    36   5.4
CP000962_1611(CP000962|pid:none) Clostridium botulinum A3 str. L...    36   5.4
AP009240_2667(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    36   5.4
CP000123_473(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    36   7.0
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    36   7.0
AF461538_1(AF461538|pid:none) Clostridium botulinum strain 62A p...    36   7.0
AC116957_140(AC116957|pid:none) Dictyostelium discoideum chromos...    36   7.0
L04159_1(L04159|pid:none) Plasmodium falciparum unknown gene.          36   7.0
(A6ZMC4) RecName: Full=Nuclear fusion protein KAR5; AltName: Ful...    36   7.0
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    36   7.0
CP000921_100(CP000921|pid:none) Streptococcus pneumoniae Taiwan1...    36   7.0
FJ406891_1(FJ406891|pid:none) Plasmodium falciparum isolate D10 ...    36   7.0
(Q04746) RecName: Full=Nuclear fusion protein KAR5; AltName: Ful...    36   7.0
BT058961_1(BT058961|pid:none) Salmo salar clone ssal-rgf-516-164...    36   7.0
FJ406884_1(FJ406884|pid:none) Plasmodium falciparum isolate T9/1...    36   7.0
(P0C8Z6) RecName: Full=Putative neugrin-like protein DDB_G0288135;     36   7.0
(Q8IDX6) RecName: Full=Reticulocyte-binding protein 2 homolog a;...    36   7.0
CP000393_2660(CP000393|pid:none) Trichodesmium erythraeum IMS101...    36   7.0
BX293980_444(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    36   7.0
CP001581_2992(CP001581|pid:none) Clostridium botulinum A2 str. K...    36   7.0
AY138499_1(AY138499|pid:none) Plasmodium falciparum normocyte bi...    36   7.0
AF312916_1(AF312916|pid:none) Plasmodium falciparum reticulocyte...    36   7.0
CP000382_1450(CP000382|pid:none) Clostridium novyi NT, complete ...    36   7.0
AY166678_1(AY166678|pid:none) Plasmodium reichenowi reticulocyte...    35   9.2
S53348(S53348;S70387) nuclear fusion protein BIK1 - yeast (Sacch...    35   9.2
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF...    35   9.2
AE014188_81(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   9.2
FJ406888_1(FJ406888|pid:none) Plasmodium falciparum isolate Dd2 ...    35   9.2
(Q80W71) RecName: Full=Pleckstrin homology domain-containing fam...    35   9.2
T19431(T19431) hypothetical protein C25A1.10 - Caenorhabditis el...    35   9.2
FN357292_141(FN357292|pid:none) Schistosoma mansoni genome seque...    35   9.2
AP002909_18(AP002909|pid:none) Oryza sativa Japonica Group genom...    35   9.2
AL844509_314(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.2
CP000266_2249(CP000266|pid:none) Shigella flexneri 5 str. 8401, ...    35   9.2
AP002860_2(AP002860|pid:none) Oryza sativa Japonica Group genomi...    35   9.2
FM992688_244(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   9.2
AF517943_1(AF517943|pid:none) Helobdella robusta hedgehog-like p...    35   9.2
AC135425_11(AC135425|pid:none) Oryza sativa (japonica cultivar-g...    35   9.2
(Q89AE5) RecName: Full=P-protein; Includes:   RecName: Full=Chor...    35   9.2
AP008207_166(AP008207|pid:none) Oryza sativa (japonica cultivar-...    35   9.2
AP001111_11(AP001111|pid:none) Oryza sativa genomic DNA, chromos...    35   9.2
AE005674_2437(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    35   9.2
(P30855) RecName: Full=Sensor protein evgS;          EC=2.7.13.3...    35   9.2
AF513033_14(AF513033|pid:none) Staphylococcus aureus phage phiP6...    35   9.2

>AF017040_1(AF017040|pid:none) Dictyostelium discoideum
            LTR-retrotransposon Skipper, Gag (gag) mRNA, complete
            cds; and Pro (pro) and Pol (pol) mRNA, partial cds.
            &AF049230_1(AF049230|pid:none) &T14596(T14596)
          Length = 382

 Score =  740 bits (1911), Expect = 0.0
 Identities = 377/382 (98%), Positives = 378/382 (98%)
 Frame = +3

Query: 399  MSSTTTHSKKAIRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTEST 578
            MSSTTT SKKAIRKAKVSSTAKRA EVTTASDDAITVQVKSKKTLRPTEVDDEIYSTEST
Sbjct: 1    MSSTTTPSKKAIRKAKVSSTAKRATEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTEST 60

Query: 579  DVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDN 758
            DVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDN
Sbjct: 61   DVSDVEVREKVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDN 120

Query: 759  GAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTDYEAANTKVVEA 938
            GAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTDYEAANTKVVEA
Sbjct: 121  GAASNELFQLLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTDYEAANTKVVEA 180

Query: 939  INHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILDNNILALLKMVVP 1118
            INHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILDNNILALLKMVVP
Sbjct: 181  INHRNCYSAQDVIKNIEAIMSYHNVINPVYLIHGTAEVQLEYLRSILDNNILALLKMVVP 240

Query: 1119 DWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNTDEKFLLKKNHATP 1298
            DWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASN DEKF LKKNHATP
Sbjct: 241  DWLQTDVAIKLNTQTDITECREAITELVLNNADKFSRRRPSDSASNNDEKFPLKKNHATP 300

Query: 1299 NHNSHNRNSFDAQADKIRAAILPEIRKDSKVDLKKIRSSFIVYRQNKGYCLNCGKSNHST 1478
            NHNSHNRNSFDAQADKIRAAILPEIRKDSKVDLKKIRSSFIVYRQ+KGYCLNCGKSNHST
Sbjct: 301  NHNSHNRNSFDAQADKIRAAILPEIRKDSKVDLKKIRSSFIVYRQSKGYCLNCGKSNHST 360

Query: 1479 STCRIDPVDAKANPGPSAKKQQ 1544
            STCRIDPVDAKANPGPSAKKQQ
Sbjct: 361  STCRIDPVDAKANPGPSAKKQQ 382

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 3,113,747,680
Number of extensions: 56296913
Number of successful extensions: 200561
Number of sequences better than 10.0: 112
Number of HSP's gapped: 199822
Number of HSP's successfully gapped: 115
Length of query: 754
Length of database: 1,061,185,681
Length adjustment: 136
Effective length of query: 618
Effective length of database: 616,676,753
Effective search space: 381106233354
Effective search space used: 381106233354
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.57  gvh: 0.25  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for Contig-U16568-1 is mit