>Contig-U03331-1 (Contig-U03331-1Q) /CSM_Contig/Contig-U03331-1Q.Seq.d
NCCAATAATATTCCAAGAAAATATATAGTANAATTAAAACATAACGATGA
CGTAAAAGACTTTGAACGTTATGAATTTGTGACCTATACGTTTAGAAGCT
TTAAATATATTTATGAAATGTTCTATAAAAAGCAAAAAAAAGTATTACAT
TTAGAAAAAATAAAAGAATATCTAGATGAACGAGCATTAGCCCATTGGAT
TATGGATGATGGCGGGTATACTGGAGCAGGTATTAGAATAGCAACAAATG
CCTTTACTTTAAAAGAAGTAATGTTTTTGAAAGAGTTATTAGAAGACAAA
TTTAAATTAAAATG

est1=FC-IC0216E,1,314

XNNIPRKYIVXLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDE
RALAHWIMDDGGYTGAGIRIATNAFTLKEVMFLKELLEDKFKLK

Frame A:
XNNIPRKYIVXLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDE
RALAHWIMDDGGYTGAGIRIATNAFTLKEVMFLKELLEDKFKLK


Frame B:
piifqeni*xn*nitmt*ktlnvmnl*pirlealnifmkcsikskkkyyi*kk*kni*mn
eh*piglwmmagileqvle*qqmpll*kk*cf*ksy*ktnln*n


Frame C:
q*yskkiysxikt*r*rkrl*tl*icdlyv*kl*iyl*nvl*kakksitfrknkrisr*t
sispldyg*wrvywsry*nsnkclyfkrsnvfervirrqi*ikm

Query= Contig-U03331-1 (Contig-U03331-1Q)
/CSM_Contig/Contig-U03331-1Q.Seq.d
         (314 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03331-1 (Contig-U03331-1Q) /CSM_Contig/Conti...   343  7e-95
Contig-U12427-1 (Contig-U12427-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U12262-1 (Contig-U12262-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U12028-1 (Contig-U12028-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U11916-1 (Contig-U11916-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U11512-1 (Contig-U11512-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U11484-1 (Contig-U11484-1Q) /CSM_Contig/Conti...    32  0.34
Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Conti...    32  0.34

>Contig-U03331-1 (Contig-U03331-1Q) /CSM_Contig/Contig-U03331-1Q.Seq.d
          Length = 314

 Score =  343 bits (173), Expect = 7e-95
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 142 gtattacatttagaaaaaataaaagaatatctagatgaacgagcattagcccattggatt 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gtattacatttagaaaaaataaaagaatatctagatgaacgagcattagcccattggatt 201

                                                                       
Query: 202 atggatgatggcgggtatactggagcaggtattagaatagcaacaaatgcctttacttta 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atggatgatggcgggtatactggagcaggtattagaatagcaacaaatgcctttacttta 261

                                                                
Query: 262 aaagaagtaatgtttttgaaagagttattagaagacaaatttaaattaaaatg 314
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaagaagtaatgtttttgaaagagttattagaagacaaatttaaattaaaatg 314


 Score =  242 bits (122), Expect = 2e-64
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccaataatattccaagaaaatatatagtanaattaaaacataacgatgacgtaaaagact 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ccaataatattccaagaaaatatatagtanaattaaaacataacgatgacgtaaaagact 61

                                                                       
Query: 62  ttgaacgttatgaatttgtgacctatacgtttagaagctttaaatatatttatgaaatgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ttgaacgttatgaatttgtgacctatacgtttagaagctttaaatatatttatgaaatgt 121

                
Query: 122 tctat 126
           |||||
Sbjct: 122 tctat 126


>Contig-U12427-1 (Contig-U12427-1Q) /CSM_Contig/Contig-U12427-1Q.Seq.d
          Length = 1890

 Score = 34.2 bits (17), Expect = 0.085
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 154 gaaaaaataaaagaata 170
           |||||||||||||||||
Sbjct: 68  gaaaaaataaaagaata 52


>Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Contig-U10122-1Q.Seq.d
          Length = 1154

 Score = 34.2 bits (17), Expect = 0.085
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 150 tttagaaaaaataaaagaata 170
           |||||||||||||||| ||||
Sbjct: 40  tttagaaaaaataaaaaaata 20


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7277
Number of Sequences: 6905
Number of extensions: 7277
Number of successful extensions: 562
Number of sequences better than 10.0: 196
length of query: 314
length of database: 5,674,871
effective HSP length: 15
effective length of query: 299
effective length of database: 5,571,296
effective search space: 1665817504
effective search space used: 1665817504
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U03331-1 (Contig-U03331-1Q) /CSM_Contig/Contig-U03331-1Q.Seq.d
         (314 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   343   e-156  2
(D50297) Dictyostelium discoideum mitochondrial cox1/2, ai2a...   343   e-156  2
(X81884) D.discoideum mitochondrial cox1 gene and cox2 gene.      343   e-156  2
(AU271419) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   337   e-155  2
(AU271420) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   343   e-145  2
(AV780841) Lotus japonicus cDNA clone:MPDL083g11_f, 3' end.        52   0.013  1
(DC219905) Plasmodium berghei strain ANKA cDNA clone:MZ00176...    44   0.013  2
(DC219130) Plasmodium berghei strain ANKA cDNA clone:MZ00055...    44   0.014  2
(CU582855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.050  1
(CS374650) Sequence 753 from Patent WO2006034879.                  44   0.10   2
(CS374378) Sequence 481 from Patent WO2006034879.                  44   0.10   2
(EJ067535) 1095458054557 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.20   1
(AC106753) Homo sapiens chromosome 5 clone RP11-174H5, compl...    42   0.30   3
(CU655869) H.numata DNA sequence from clone AEHN-38G4.             38   0.34   4
(AL161590) Arabidopsis thaliana DNA chromosome 4, contig fra...    34   0.36   5
(AL138739) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   0.37   3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.64   9
(AC232559) Brassica rapa subsp. pekinensis clone KBrH038M21,...    32   0.65   7
(CU914242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.77   1
(CU582971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.77   1
(AC232037) Solanum tuberosum strain Diploid genotype RH89-03...    46   0.77   1
(ER299253) 1092343671812 Global-Ocean-Sampling_GS-34-01-01-1...    46   0.77   1
(DH391278) Oryzias latipes Fosmid clone:GOLWFno787_k23, forw...    46   0.77   1
(DC101405) Xenopus laevis NBRP cDNA clone:xl225o06, 5' end.        46   0.77   1
(BY359345) Mus musculus 15 days embryo head cDNA, RIKEN full...    46   0.77   1
(BU910279) AGENCOURT_10490362 NICHD_XGC_Emb1 Xenopus laevis ...    46   0.77   1
(BQ735286) AGENCOURT_8097210 NICHD_XGC_Emb4 Xenopus laevis c...    46   0.77   1
(BJ033509) Xenopus laevis cDNA clone:XL022a06, 5' end, singl...    46   0.77   1
(EJ202245) 1092344309626 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.78   2
(GE532396) CCHS19096.b1_O22.ab1 CCHS Espina Barnadesia spino...    36   0.80   2
(ER602838) 1093016255419 Global-Ocean-Sampling_GS-36-01-01-2...    38   0.98   2
(CU638869) Zebrafish DNA sequence from clone CH73-369D14 in ...    42   1.2    2
(CU929688) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.3    3
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       42   1.3    4
(AC179508) Strongylocentrotus purpuratus clone R3-1035E5, WO...    42   1.8    2
(CU975672) Brassica napus GSS, clone JBnB063H02, end read, p...    38   1.8    2
(AC093882) Homo sapiens BAC clone RP11-658L13 from 4, comple...    44   2.0    2
(CL117394) ISB1-68I9_Sp6.1 ISB1 Xenopus (Silurana) tropicali...    32   2.1    2
(AC087771) Genomic Sequence for Medicago truncatula, clone 8...    40   2.1    4
(AL974310) Zebrafish DNA sequence from clone DKEY-14J6.            38   2.2    2
(BX957260) Zebrafish DNA sequence from clone DKEY-1N7 in lin...    38   2.2    2
(AC208298) Glycine tomentella clone gtt1-204p21, WORKING DRA...    36   2.4    4
(AC124011) Mus musculus BAC clone RP23-218I3 from 9, complet...    38   2.4    2
(AC178585) Strongylocentrotus purpuratus clone R3-3025B04, W...    38   2.5    2
(CU896606) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.5    3
(EK117842) 1092963265182 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.6    2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    42   2.8    4
(EJ013960) 1095433011105 Global-Ocean-Sampling_GS-26-01-01-1...    34   2.9    2
(EK140224) 1095454095115 Global-Ocean-Sampling_GS-31-01-01-1...    40   3.0    2
(EU344893) Grapevine leafroll-associated virus 3 isolate Cl-...    44   3.1    1
(BV380275) S245P6208FH6.T0 SpanishGrayWolf Canis lupus STS g...    44   3.1    1
(AL731713) Mouse DNA sequence from clone RP23-32L9 on chromo...    44   3.1    1
(AC125487) Mus musculus BAC clone RP23-38L16 from 12, comple...    44   3.1    1
(AC187726) Pan troglodytes BAC clone CH251-325J20 from chrom...    44   3.1    1
(AC142311) Pan troglodytes BAC clone RP43-47I3 from chromoso...    44   3.1    1
(GC702060) Sequence 17305 from patent US 6812339.                  44   3.1    1
(GC697651) Sequence 12896 from patent US 6812339.                  44   3.1    1
(AP006297) Homo sapiens genomic DNA, chromosome 6 clone:RP11...    44   3.1    1
(AP006198) Homo sapiens genomic DNA, chromosome 6, clone:RP1...    44   3.1    1
(AP002530) Homo sapiens genomic DNA, chromosome 6q21, anti-o...    44   3.1    1
(AL355532) Human DNA sequence from clone RP11-487F5 on chrom...    44   3.1    1
(AC073203) Homo sapiens BAC clone RP11-313M4 from 7, complet...    44   3.1    1
(AB041340) Homo sapiens genomic DNA, chromosome 6q21, clone:...    44   3.1    1
(AC094729) Rattus norvegicus clone CH230-5I2, WORKING DRAFT ...    44   3.1    1
(FP102206) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(CU928288) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.1    1
(AC197346) Zea mays chromosome 9 clone CH201-307N3; ZMMBBc03...    44   3.1    1
(AZ674387) ENTMB25TF Entamoeba histolytica Sheared DNA Entam...    44   3.1    1
(FH981090) CHO_OF6828xh12r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   3.1    1
(FH892704) zaBac05-4_C03 Guppy pIndigoBAC-5 genomic Poecilia...    44   3.1    1
(FH466963) CHO_OF4960xj03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   3.1    1
(ER591608) 1093016200775 Global-Ocean-Sampling_GS-36-01-01-2...    44   3.1    1
(ER449763) 1092963844348 Global-Ocean-Sampling_GS-35-01-01-1...    44   3.1    1
(DX021986) KBrB015O17R KBrB, Brassica rapa BamHI BAC library...    44   3.1    1
(DU110318) JBnY030A16R Brassica napus BAC library JBnY Brass...    44   3.1    1
(CZ737701) OC__Ba0075C20.r OC__Ba Oryza coarctata genomic cl...    44   3.1    1
(CZ531787) SRAA-aac74h02.b1 Strongyloides ratti whole genome...    44   3.1    1
(CW047111) 104_284_10512543_114_30219 Sorghum methylation fi...    44   3.1    1
(CT159329) Sus scrofa genomic clone CH242-139I22, genomic su...    44   3.1    1
(BZ339817) ic35a08.g1 WGS-SbicolorF (JM107 adapted methyl fi...    44   3.1    1
(BZ334410) hx79c02.g1 WGS-SbicolorF (JM107 adapted methyl fi...    44   3.1    1
(BZ334409) hx79c02.b1 WGS-SbicolorF (JM107 adapted methyl fi...    44   3.1    1
(BZ333338) hx69c11.b1 WGS-SbicolorF (JM107 adapted methyl fi...    44   3.1    1
(AM052169) Diploplastron affine EST, clone dip_S02NT696.           44   3.1    1
(BF693236) 602081220F1 NIH_MGC_81 Homo sapiens cDNA clone IM...    44   3.1    1
(FC820604) Sr_pAMT7_018d05_T7 S. ratti mixed stage pAMP Stro...    44   3.1    1
(FC815218) Sr_pAMT7_02g11_T7 S. ratti mixed stage pAMP Stron...    44   3.1    1
(FC811549) Sr_pASP6_07p10_SP6 S. ratti mixed stage pAMP Stro...    44   3.1    1
(FC811439) Sr_pASP6_07j18_SP6 S. ratti mixed stage pAMP Stro...    44   3.1    1
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome.      44   3.1    1
(CP000745) Methanococcus maripaludis C7, complete genome.          44   3.1    1
(CP000716) Thermosipho melanesiensis BI429, complete genome.       44   3.1    1
(EJ578762) 1092960132856 Global-Ocean-Sampling_GS-29-01-01-1...    38   3.2    2
(AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,...    42   3.2    4
(EK270313) 1095462254769 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.2    2
(FP101980) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.2    5
(EJ303177) 1095390049870 Global-Ocean-Sampling_GS-27-01-01-1...    36   3.4    2
(AC154765) Mus musculus BAC clone RP24-427C1 from 12, comple...    36   3.5    4
(FB596650) Sequence 12373 from Patent WO2004081186.                36   3.7    3
(CP000033) Lactobacillus acidophilus NCFM, complete genome.        36   4.2    7
(AC134593) Mus musculus chromosome UNK clone RP23-385K11, **...    34   4.3    3
(AC206231) Pongo abelii chromosome UNKNOWN clone CH276-43E2,...    34   4.4    6
(AC092491) Homo sapiens 12 BAC RP11-125G9 (Roswell Park Canc...    42   4.7    2
(GC532299) Sequence 11419 from patent US 7411051.                  34   5.1    5
(EA749560) Sequence 11419 from patent US 7368531.                  34   5.1    5
(CP000683) Rickettsia massiliae MTU5, complete genome.             38   5.2    8
(AM433152) Vitis vinifera contig VV78X220717.10, whole genom...    32   5.2    3
(AM441263) Vitis vinifera contig VV78X203565.8, whole genome...    38   5.3    2
(DX556630) GH_MBb0065M10f GH_MBb Gossypium hirsutum genomic ...    34   5.3    2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   5.4    6
(AC109061) Rattus norvegicus clone CH230-101L7, *** SEQUENCI...    40   5.5    3
(CU655881) P.sativum DNA sequence from clone JICPSV-598E15.        32   5.9    2
(CU984549) Brassica rapa subsp. pekinensis clone KBrB040I06,...    34   6.0    4
(AC158404) Mus musculus BAC clone RP24-112K13 from chromosom...    36   6.1    4
(AC169096) Bos taurus clone CH240-226I18, WORKING DRAFT SEQU...    36   6.3    4
(AC124603) Mus musculus BAC clone RP23-52H14 from chromosome...    38   6.5    4
(AX926714) Sequence 4 from Patent WO03084989.                      34   6.6    5
(EB319542) CNSN01-F-022934-501 Normalized CNS library (juven...    36   6.9    2
(AC123400) Rattus norvegicus clone CH230-404I15, *** SEQUENC...    36   7.5    4
(EJ454251) 1093015546612 Global-Ocean-Sampling_GS-28-01-01-1...    32   7.5    2
(EK054205) 1092960001129 Global-Ocean-Sampling_GS-31-01-01-1...    32   8.0    2
(CU468009) H.melpomene DNA sequence from clone AEHM-27N4.          38   8.1    4
(AC139863) Mus musculus chromosome 14, clone RP23-19M21, com...    42   8.2    2
(AC173040) Bos taurus clone CH240-98E16, WORKING DRAFT SEQUE...    42   8.4    2
(AC158533) Mus musculus BAC clone RP23-107I15 from chromosom...    42   8.4    2
(DU497028) 1098421026643 CHORI-243 Ovis aries genomic clone ...    36   9.0    2
(AC212022) Pongo abelii chromosome UNKNOWN clone CH276-203I1...    42   9.0    2
(AL954678) Zebrafish DNA sequence from clone CH211-207E14 in...    42   9.1    2
(CU469515) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   9.2    2
(AC173963) Glycine tomentella clone gtd1-77d2, WORKING DRAFT...    36   9.3    4
(AC082649) Homo sapiens BAC clone RP11-99E17 from 4, complet...    34   9.7    3
(AC113948) Oryza sativa chromosome 10 BAC OSJNBb0038A07 geno...    32   9.9    4

>(AB000109) Dictyostelium discoideum mitochondrial DNA, complete genome.
          Length = 55564

 Score =  343 bits (173), Expect(2) = e-156
 Identities = 173/173 (100%)
 Strand = Plus / Plus


Query: 142   gtattacatttagaaaaaataaaagaatatctagatgaacgagcattagcccattggatt 201
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12902 gtattacatttagaaaaaataaaagaatatctagatgaacgagcattagcccattggatt 12961


Query: 202   atggatgatggcgggtatactggagcaggtattagaatagcaacaaatgcctttacttta 261
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12962 atggatgatggcgggtatactggagcaggtattagaatagcaacaaatgcctttacttta 13021


Query: 262   aaagaagtaatgtttttgaaagagttattagaagacaaatttaaattaaaatg 314
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13022 aaagaagtaatgtttttgaaagagttattagaagacaaatttaaattaaaatg 13074

 Score =  242 bits (122), Expect(2) = e-156
 Identities = 124/125 (99%)
 Strand = Plus / Plus


Query: 2     ccaataatattccaagaaaatatatagtanaattaaaacataacgatgacgtaaaagact 61
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12762 ccaataatattccaagaaaatatatagtaaaattaaaacataacgatgacgtaaaagact 12821


Query: 62    ttgaacgttatgaatttgtgacctatacgtttagaagctttaaatatatttatgaaatgt 121
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12822 ttgaacgttatgaatttgtgacctatacgtttagaagctttaaatatatttatgaaatgt 12881


Query: 122   tctat 126
             |||||
Sbjct: 12882 tctat 12886

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 440,545,312
Number of extensions: 32180894
Number of successful extensions: 2921214
Number of sequences better than 10.0: 135
Length of query: 314
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 291
Effective length of database: 99,442,330,388
Effective search space: 28937718142908
Effective search space used: 28937718142908
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U03331-1 (Contig-U03331-1Q) /CSM_Contig/Contig-U03331-1Q.Seq.d
         (314 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81884_4(X81884|pid:none) D.discoideum mitochondrial cox1 gene a...   186   2e-46
AB000109_9(AB000109|pid:none) Dictyostelium discoideum mitochond...   186   2e-46
AY863213_8(AY863213|pid:none) Smittium culisetae mitochondrion, ...    73   4e-12
(A9RAG8) RecName: Full=Cytochrome b mRNA maturase bI2;  &DQ50894...    60   2e-08
AJ307410_15(AJ307410|pid:none) Yarrowia lipolytica complete mito...    58   9e-08
S63639(S63639)hypothetical protein 246 - Allomyces macrogynus mi...    57   2e-07
S63641(S63641)hypothetical protein 242 - Allomyces macrogynus mi...    57   3e-07
EF463011_23(EF463011|pid:none) Chlorokybus atmophyticus strain S...    56   3e-07
S63646(S63646)hypothetical protein 261 - Allomyces macrogynus mi...    54   2e-06
DQ287690_6(DQ287690|pid:none) Blastocladiella emersonii mitochon...    53   4e-06
AJ249985_2(AJ249985|pid:none) Podospora curvicolla mitochondrial...    52   7e-06
AF110138_31(AF110138|pid:none) Nephroselmis olivacea mitochondri...    51   1e-05
X95974_1(X95974|pid:none) Saccharomyces cerevisiae mitochondrial...    51   1e-05
L43503_3(L43503|pid:none) Chlamydomonas pallidostigmatica chloro...    51   1e-05
EU352794_2(EU352794|pid:none) Trebouxia jamesii strain UTEX 2233...    50   2e-05
AF538044_4(AF538044|pid:none) Amoebidium parasiticum mitochondri...    50   2e-05
J01472_1(J01472|pid:none) Saccharomyces cerevisiae cytochrome b ...    50   3e-05
AF404303_13(AF404303|pid:none) Spizellomyces punctatus mitochond...    48   9e-05
AF010257_4(AF010257|pid:none) Agrocybe aegerita cytochrome c oxi...    48   1e-04
AJ841289_1(AJ841289|pid:none) uncultured Glomus mitochondrial pa...    48   1e-04
L43352_3(L43352|pid:none) Chlamydomonas frankii chloroplast larg...    47   2e-04
EU337988_1(EU337988|pid:none) Volvox carteri f. nagariensis clon...    47   3e-04
AF008237_12(AF008237|pid:none) Chlamydomonas eugametos mitochond...    47   3e-04
AF402142_6(AF402142|pid:none) Hyaloraphidium curvatum mitochondr...    46   4e-04
DQ026513_4(DQ026513|pid:none) Candida orthopsilosis strain MCO47...    46   4e-04
AY962590_4(AY962590|pid:none) Candida orthopsilosis strain MCO45...    46   4e-04
AJ841288_1(AJ841288|pid:none) uncultured Glomus mitochondiral pa...    46   4e-04
EU306617_2(EU306617|pid:none) Chlamydomonas reinhardtii strain C...    46   5e-04
X55305_2(X55305|pid:none) C.smithii, mobile intron of apocytochr...    46   5e-04
AF404306_9(AF404306|pid:none) Rhizophydium sp. 136 mitochondrion...    45   6e-04
DQ291132_35(DQ291132|pid:none) Oltmannsiellopsis viridis chlorop...    45   8e-04
L49150_4(L49150|pid:none) Chlorosarcina brevispinosa chloroplast...    45   8e-04
DQ376035_4(DQ376035|pid:none) Candida parapsilosis strain CLIB21...    44   0.002
AJ841807_1(AJ841807|pid:none) Glomus intraradices mitochondrial ...    44   0.002
DQ373068_2(DQ373068|pid:none) Chlamydomonas incerta mitochondrio...    44   0.002
AJ973193_1(AJ973193|pid:none) Glomus intraradices mitochondrial ...    43   0.003
S63653(S63653) hypothetical protein 176 - Allomyces macrogynus m...    43   0.003
DQ157700_12(DQ157700|pid:none) Ustilago maydis mitochondrion, co...    43   0.004
AJ973192_1(AJ973192|pid:none) Glomus intraradices mitochondrial ...    43   0.004
(Q0H8Y2) RecName: Full=Probable intron-encoded endonuclease aI7;...    43   0.004
AF404306_36(AF404306|pid:none) Rhizophydium sp. 136 mitochondrio...    42   0.005
CS559091_1(CS559091|pid:none) Sequence 6 from Patent WO2006032426.     42   0.007
AF402779_1(AF402779|pid:none) Expression vector pKSUC1, complete...    42   0.007
AF170481_1(AF170481|pid:none) Cloning vector pUC19RP12, complete...    42   0.007
CQ779208_1(CQ779208|pid:none) Sequence 4 from Patent WO2004015134.     42   0.007
AX674823_1(AX674823|pid:none) Sequence 1 from Patent WO03004659.       42   0.007
X00149_1(X00149|pid:none) Saccharomyces cerevisiae  mt 21s rRNA ...    42   0.007
FJ797515_4(FJ797515|pid:none) Expression vector pBADSce, complet...    42   0.007
X00143_1(X00143|pid:none) Kluyveromyces thermotolerans mt 21s rR...    42   0.009
(Q0H8Z1) RecName: Full=Probable intron-encoded DNA endonuclease ...    41   0.012
(Q34807) RecName: Full=Probable intron-encoded endonuclease 1;  ...    41   0.012
S23208(S23208)mRNA maturase bI2 - yeast (Saccharomyces sp.) mito...    41   0.015
AF404306_19(AF404306|pid:none) Rhizophydium sp. 136 mitochondrio...    41   0.015
AF004559_6(AF004559|pid:none) Venturia inaequalis RT-like protei...    41   0.015
L43539_1(L43539|pid:none) Chlamydomonas sp. (SAG 66.72) chloropl...    40   0.020
DQ630521_3(DQ630521|pid:none) Stigeoclonium helveticum strain UT...    40   0.026
AJ841804_1(AJ841804|pid:none) Glomus intraradices mitochondrial ...    40   0.026
EU275726_9(EU275726|pid:none) Polysphondylium pallidum strain PN...    40   0.034
L49155_1(L49155|pid:none) Neochloris aquatica chloroplast large-...    39   0.044
AF404303_28(AF404303|pid:none) Spizellomyces punctatus mitochond...    39   0.058
AY359242_3(AY359242|pid:none) Pseudendoclonium akinetum mitochon...    39   0.058
L42984_2(L42984|pid:none) Ankistrodesmus stipitatus chloroplast ...    39   0.058
AY008341_1(AY008341|pid:none) Trichosarcina mucosa large subunit...    39   0.075
DQ365900_1(DQ365900|pid:none) Oltmannsiellopsis viridis mitochon...    39   0.075
CR382137_188(CR382137|pid:none) Debaryomyces hansenii strain CBS...    37   0.29
AF204057_1(AF204057|pid:none) Scenedesmus obliquus strain UTEX 7...    36   0.49
FJ535847_1(FJ535847|pid:none) Flabellia petiolata 16S ribosomal ...    35   0.64
FJ493497_81(FJ493497|pid:none) Monomastix sp. OKE-1 chloroplast,...    35   0.64
(Q32001) RecName: Full=DNA endonuclease I-ChuI;          EC=3.1....    35   0.64
AX674825_1(AX674825|pid:none) Sequence 3 from Patent WO03004659.       35   0.64
S17997(S17997)hypothetical gene COX1 intron 3 protein - yeast  (...    35   0.64
FJ030909_1(FJ030909|pid:none) Nannochloropsis gaditana strain SA...    35   0.83
AY391261_1(AY391261|pid:none) Uncultured dinoflagellate BSL-2003...    34   1.9
X17375_16(X17375|pid:none) Scenedesmus obliquus complete mitocho...    33   2.4
DQ980455_1(DQ980455|pid:none) Pterosperma cristatum clone pchsp9...    33   3.2
AF087656_3(AF087656|pid:none) Agrocybe aegerita large subunit ri...    32   5.4
EU139304_1(EU139304|pid:none) Panax quinquefolius clone PG4X-6 h...    32   7.0
DQ980452_1(DQ980452|pid:none) Pterosperma cristatum clone pchsp9...    32   7.0
CU466930_1416(CU466930|pid:none) Candidatus Cloacamonas acidamin...    32   7.0
AM260522_482(AM260522|pid:none) Helicobacter acinonychis str. Sh...    32   7.0
CP000923_2042(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    32   7.0
DQ980456_1(DQ980456|pid:none) Pterosperma cristatum clone pchsp9...    32   7.0
(P61243) RecName: Full=Protein ycf2;  &AP005672_45(AP005672|pid:...    32   9.2
DQ980453_1(DQ980453|pid:none) Pterosperma cristatum clone pchsp9...    32   9.2
CP000425_1539(CP000425|pid:none) Lactococcus lactis subsp. cremo...    32   9.2
AM910996_413(AM910996|pid:none) Plasmodium knowlesi strain H chr...    32   9.2
(Q65MA3) RecName: Full=Regulatory protein recX;  &AE017333_820(A...    32   9.2
CP000382_1768(CP000382|pid:none) Clostridium novyi NT, complete ...    32   9.2

>X81884_4(X81884|pid:none) D.discoideum mitochondrial cox1 gene and
           cox2 gene.
          Length = 215

 Score =  186 bits (473), Expect = 2e-46
 Identities = 89/90 (98%), Positives = 89/90 (98%)
 Frame = +1

Query: 4   NNIPRKYIVXLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDER 183
           NNIPRKYIV LKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDER
Sbjct: 72  NNIPRKYIVKLKHNDDVKDFERYEFVTYTFRSFKYIYEMFYKKQKKVLHLEKIKEYLDER 131

Query: 184 ALAHWIMDDGGYTGAGIRIATNAFTLKEVM 273
           ALAHWIMDDGGYTGAGIRIATNAFTLKEVM
Sbjct: 132 ALAHWIMDDGGYTGAGIRIATNAFTLKEVM 161

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 419,469,728
Number of extensions: 6946586
Number of successful extensions: 18609
Number of sequences better than 10.0: 88
Number of HSP's gapped: 18576
Number of HSP's successfully gapped: 88
Length of query: 104
Length of database: 1,061,185,681
Length adjustment: 72
Effective length of query: 32
Effective length of database: 825,857,425
Effective search space: 26427437600
Effective search space used: 26427437600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

 psg: 0.66  gvh: 0.06  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U03331-1 is nuc