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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03328-1
Contig ID Contig-U03328-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Contig-U03328-1Q.Seq.d
ACAATTGGTGGTAACTGATTATGATCACCAATTAATATAACTCTTTTTAA
ACCTCTACTTATATTATTACCATTACCATTACCATTATCATCGCCATCAA
CACCAATAATTGCATCACCAATTTCATTTGAATTTAATTGTAATTGTAAT
GGTATAAAAGATTCAATATCAGAGATTTGAGCAGATTCTTCCATTAATAA
ATTATCAAATTTAAAACCTAATCTTAATAATTCATTTCTTTTTAAAGCAG
CATGAG
Gap no gap
Contig length 256
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3863899
End point 3864155
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 1
Link to clone list U03328
List of clone(s) 

est1=FC-IC0191E,1,257
Translated Amino Acid sequence 
tiggn*l*SPINITLFKPLLILLPLPLPLSSPSTPIIASPISFEFNCNCNGIKDSISEI*
adssinklsnlkpnlnnsflfkaa*
Translated Amino Acid sequence (All Frames) 
Frame A:
tiggn*l*SPINITLFKPLLILLPLPLPLSSPSTPIIASPISFEFNCNCNGIKDSISEI*
adssinklsnlkpnlnnsflfkaa*


Frame B:
qlvvtdydhqli*lflnlylyyyhyhyhyhrhqhq*lhhqfhlnlivivmv*kiqyqrfe
qilplinyqi*nliliihfflkqhe


Frame C:
nww*limitn*ynsf*tstyiitititiiiaintnncitnfi*i*l*l*wykrfnirdls
rffh**iikfkt*s**fisf*ssm
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03328-1 (Contig-U03328-1Q)
/CSM_Contig/Contig-U03328-1Q.Seq.d
         (256 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Conti...   507  e-144
Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Conti...    48  5e-06
Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U14635-1 (Contig-U14635-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U08850-1 (Contig-U08850-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U14191-1 (Contig-U14191-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U13348-1 (Contig-U13348-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U13206-1 (Contig-U13206-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    40  0.001

>Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Contig-U03328-1Q.Seq.d
          Length = 256

 Score =  507 bits (256), Expect = e-144
 Identities = 256/256 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaattggtggtaactgattatgatcaccaattaatataactctttttaaacctctactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaattggtggtaactgattatgatcaccaattaatataactctttttaaacctctactt 60

                                                                       
Query: 61  atattattaccattaccattaccattatcatcgccatcaacaccaataattgcatcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atattattaccattaccattaccattatcatcgccatcaacaccaataattgcatcacca 120

                                                                       
Query: 121 atttcatttgaatttaattgtaattgtaatggtataaaagattcaatatcagagatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttcatttgaatttaattgtaattgtaatggtataaaagattcaatatcagagatttga 180

                                                                       
Query: 181 gcagattcttccattaataaattatcaaatttaaaacctaatcttaataattcatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcagattcttccattaataaattatcaaatttaaaacctaatcttaataattcatttctt 240

                           
Query: 241 tttaaagcagcatgag 256
           ||||||||||||||||
Sbjct: 241 tttaaagcagcatgag 256


>Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Contig-U05633-1Q.Seq.d
          Length = 734

 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 63  attattaccattaccattaccatt 86
           ||||||||||||||||||||||||
Sbjct: 153 attattaccattaccattaccatt 130


 Score = 32.2 bits (16), Expect = 0.27
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 72  attaccattaccatta 87
           ||||||||||||||||
Sbjct: 150 attaccattaccatta 135


>Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Contig-U12319-1Q.Seq.d
          Length = 1367

 Score = 44.1 bits (22), Expect = 7e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 66   attaccattaccattaccatta 87
            ||||||||||||||||||||||
Sbjct: 1299 attaccattaccattaccatta 1278


 Score = 44.1 bits (22), Expect = 7e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 66   attaccattaccattaccatta 87
            ||||||||||||||||||||||
Sbjct: 1305 attaccattaccattaccatta 1284


 Score = 34.2 bits (17), Expect = 0.068
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 67   ttaccattaccattaccatta 87
            |||| ||||||||||||||||
Sbjct: 1310 ttacgattaccattaccatta 1290


 Score = 30.2 bits (15), Expect = 1.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 68  taccattaccattaccatt 86
           |||||||||||| ||||||
Sbjct: 655 taccattaccatcaccatt 637


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7746
Number of Sequences: 6905
Number of extensions: 7746
Number of successful extensions: 2948
Number of sequences better than 10.0: 425
length of query: 256
length of database: 5,674,871
effective HSP length: 15
effective length of query: 241
effective length of database: 5,571,296
effective search space: 1342682336
effective search space used: 1342682336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.31
Homology vs DNA 
Query= Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Contig-U03328-1Q.Seq.d
         (256 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   507   e-140  1
(AU271406) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   507   e-140  1
(AU271405) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   507   e-140  1
(AU271404) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   507   e-140  1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    58   2e-04  1
(AC178594) Strongylocentrotus purpuratus clone R3-3021N20, W...    56   6e-04  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    46   0.001  7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.001  7
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   0.001  2
(BJ335675) Dictyostelium discoideum cDNA clone:dda51l04, 5' ...    50   0.002  2
(BJ333944) Dictyostelium discoideum cDNA clone:dda44g18, 5' ...    50   0.002  2
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    48   0.003  2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    46   0.008  7
(AX647377) Sequence 1569 from Patent EP1270724.                    52   0.010  1
(AY392153) Schistosoma bovis nicotinic acetylcholine recepto...    52   0.010  1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    52   0.010  1
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    52   0.010  1
(AL049773) Human DNA sequence from clone RP5-1061O18 on chro...    52   0.010  1
(AC181923) Strongylocentrotus purpuratus clone R3-1009K23, W...    52   0.010  1
(AC180928) Strongylocentrotus purpuratus clone R3-3026I08, W...    52   0.010  1
(AC176477) Strongylocentrotus purpuratus clone R3-3070K2, WO...    52   0.010  1
(AC174874) Strongylocentrotus purpuratus clone R3-1006A6, WO...    52   0.010  1
(AC168762) Strongylocentrotus purpuratus clone R3-3004F4, WO...    52   0.010  1
(EX821582) CBNA7652.rev CBNA Phycomyces blakesleeanus NRRL15...    52   0.010  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.021  6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    40   0.027  7
(CZ533836) SRAA-aac87f03.b1 Strongyloides ratti whole genome...    36   0.033  2
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    50   0.040  1
(AL132985) Human chromosome 14 DNA sequence BAC R-1103G16 of...    50   0.040  1
(AC092327) Homo sapiens chromosome 16 clone RP11-158I3, comp...    50   0.040  1
(AC179200) Strongylocentrotus purpuratus clone R3-4019J21, W...    50   0.040  1
(AC177224) Strongylocentrotus purpuratus clone R3-1034L15, W...    50   0.040  1
(CN246033) EST011918 Mycelium and yeast cells from Paracocci...    50   0.040  1
(BU000779) QGG26A10.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    50   0.040  1
(BQ850365) QGB12G16.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    50   0.040  1
(BM027318) GIT0000656 Root-induced cDNA library from Glomus ...    50   0.040  1
(BI505723) BB170031A10E02.5 Bee Brain Normalized/Subtracted ...    50   0.040  1
(FG813802) UCRVU04_CCNI2021_g1 Cowpea 524B Mixed Tissue and ...    50   0.040  1
(EW965375) BRHL_03_O01_T7 Headlice composite library with al...    50   0.040  1
(AJ012088) Dictyostelium discoideum mRNA for microtubule-ass...    48   0.068  2
(BU748346) CH3#019_D09T7 Canine heart normalized cDNA Librar...    34   0.070  3
(AC157233) Bos taurus clone CH240-69F16, WORKING DRAFT SEQUE...    34   0.095  2
(BJ397533) Dictyostelium discoideum cDNA clone:dds46l16, 5' ...    44   0.11   2
(AC189996) Microcebus murinus clone CH257-127F21, WORKING DR...    42   0.14   4
(AC160031) Mus musculus 10 BAC RP24-395H7 (Roswell Park Canc...    48   0.16   1
(AM452130) Vitis vinifera, whole genome shotgun sequence, co...    48   0.16   1
(CQ577284) Sequence 5042 from Patent WO0171042.                    48   0.16   1
(CQ577283) Sequence 5041 from Patent WO0171042.                    48   0.16   1
(U63857) Drosophila melanogaster decapentaplegic protein (dp...    48   0.16   1
(M30116) D.melanogaster decapentaplegic gene complex (DPP-C)...    48   0.16   1
(BT015227) Drosophila melanogaster RE20611 full insert cDNA.       48   0.16   1
(AF279134) Dictyostelium discoideum bifunctional glycosyltra...    48   0.16   1
(AC092189) Drosophila melanogaster clone BACR34M11, complete...    48   0.16   1
(AC004369) Drosophila melanogaster DNA sequence (P1 DS07066 ...    48   0.16   1
(AC079997) Homo sapiens BAC clone RP11-748B21 from 2, comple...    48   0.16   1
(AC019923) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.16   1
(FI364653) CH321-69I01.x CHORI-321 Drosophila melanogaster g...    48   0.16   1
(EI390687) POTCK75TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.16   1
(AL055807) Drosophila melanogaster genome survey sequence TE...    48   0.16   1
(CW707992) AIAA-aac08d01.g1 Ancylostoma caninum whole genome...    48   0.16   1
(AG910700) Drosophila auraria DNA, clone: DAB1-004E12.F.fa, ...    48   0.16   1
(EC770709) EST 7205 Guarana fruits cDNA library Paullinia cu...    48   0.16   1
(EC190561) SSE00005336 Streblomastix strix Non-normalized St...    48   0.16   1
(DT011956) VVH024G12_742571 CabSau Flower Nectary Stage 25 (...    48   0.16   1
(AU074240) Dictyostelium discoideum slug cDNA, clone SSK116.       48   0.16   1
(CN845958) PG07006A08 Ginseng cDNA library from MeJA treated...    48   0.16   1
(C91353) Dictyostelium discoideum slug cDNA, clone SSK116.         48   0.16   1
(EX836373) CBNB6361.rev CBNB Phycomyces blakesleeanus NRRL15...    48   0.16   1
(CP000817) Lysinibacillus sphaericus C3-41, complete genome.       48   0.16   1
(AR551704) Sequence 6835 from patent US 6747137.                   42   0.18   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.20   6
(AL928887) Zebrafish DNA sequence from clone CH211-136O14 in...    34   0.22   6
(BX005135) Zebrafish DNA sequence from clone CH211-89P16 in ...    38   0.24   4
(AC187865) Populus trichocarpa clone Pop1-4F12, complete seq...    40   0.24   3
(AC138010) Medicago truncatula clone mth2-21i21, complete se...    44   0.24   2
(AC147013) Medicago truncatula clone mth2-159f24, complete s...    44   0.26   2
(AC233465) Solanum tuberosum chromosome 5 clone RH095I08, **...    44   0.29   2
(DL218757) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO...    42   0.36   2
(CQ652576) Sequence 9533 from Patent WO0234771.                    42   0.36   2
(AB368340) Streptococcus agalactiae pbp 1a gene for penicill...    42   0.36   2
(AB279859) Streptococcus agalactiae PBP1A gene for penicilli...    42   0.36   2
(AB279829) Streptococcus agalactiae PBP1A gene for penicilli...    42   0.36   2
(AB279804) Streptococcus agalactiae PBP1A gene for penicilli...    42   0.36   2
(AB279794) Streptococcus agalactiae PBP1A gene for penicilli...    42   0.36   2
(AC087384) Homo sapiens chromosome 8, clone RP11-689G24, com...    32   0.36   2
(DL218338) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO...    42   0.37   2
(DL215464) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO...    42   0.37   2
(CQ651738) Sequence 8695 from Patent WO0234771.                    42   0.37   2
(CQ645990) Sequence 2947 from Patent WO0234771.                    42   0.37   2
(AC024473) Homo sapiens chromosome 3 clone RP11-644C3 map 3,...    44   0.40   3
(AC215896) Populus trichocarpa clone POP032-O11, complete se...    40   0.43   3
(AC200931) Strongylocentrotus purpuratus clone R3-1021N13, W...    46   0.48   3
(AC214782) Nomascus leucogenys chromosome UNK clone CH271-63...    42   0.49   3
(AC152204) Bos taurus clone CH240-1H2, WORKING DRAFT SEQUENC...    40   0.57   3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   0.58   6
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    46   0.59   5
(BX640579) Zebrafish DNA sequence from clone CH211-266K5 in ...    46   0.62   1
(CT009697) Mouse DNA sequence from clone RP23-131H5 on chrom...    46   0.62   1
(AC159542) Mus musculus 10 BAC RP23-137B10 (Roswell Park Can...    46   0.62   1
(AC154299) Mus musculus BAC clone RP23-402I16 from chromosom...    46   0.62   1
(AC153506) Mus musculus 10 BAC RP23-99K2 (Roswell Park Cance...    46   0.62   1
(AC127598) Mus musculus BAC clone RP23-84E16 from 7, complet...    46   0.62   1
(Z67753) Odontella sinensis complete chloroplast genome.           46   0.62   1
(X55026) Podospora anserina complete mitochondrial genome.         46   0.62   1
(M28703) Podospora anserina cytochrome oxidase subunit 1 gen...    46   0.62   1
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    46   0.62   1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    46   0.62   1
(CR380947) Candida glabrata strain CBS138 chromosome A compl...    46   0.62   1
(AM451749) Vitis vinifera contig VV78X233142.5, whole genome...    46   0.62   1
(AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM...    46   0.62   1
(AE014298) Drosophila melanogaster chromosome X, complete se...    46   0.62   1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    46   0.62   1
(AC104642) Trypanosoma brucei chromosome 3 clone RPCI93-27C5...    46   0.62   1
(AC099308) Drosophila melanogaster clone BACR11M14, complete...    46   0.62   1
(AC099010) Drosophila melanogaster, chromosome 2L, region 27...    46   0.62   1
(AC092397) Drosophila melanogaster, chromosome 2L, region 26...    46   0.62   1
(AC004303) Drosophila melanogaster DNA sequence (P1 DS06475 ...    46   0.62   1
(AL512638) Human DNA sequence from clone RP4-663N10 on chrom...    46   0.62   1
(AC108018) Homo sapiens BAC clone RP11-4E12 from 4, complete...    46   0.62   1
(AC024591) Homo sapiens chromosome 16 clone RP11-511G21, com...    46   0.62   1
(AC150155) Gallus gallus clone WAG-8J2, WORKING DRAFT SEQUEN...    46   0.62   1
(AC150093) Gallus gallus clone TAM31-84A9, WORKING DRAFT SEQ...    46   0.62   1
(AC150059) Gallus gallus clone CH261-32I2, WORKING DRAFT SEQ...    46   0.62   1
(AC150046) Gallus gallus clone CH261-139E10, WORKING DRAFT S...    46   0.62   1
(AC111606) Rattus norvegicus clone CH230-199L6, *** SEQUENCI...    46   0.62   1
(CU928770) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.62   1
(CU570872) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.62   1
(AP001393) Homo sapiens genomic DNA, chromosome 1 clone:RP11...    46   0.62   1
(AC184377) Strongylocentrotus purpuratus clone R3-3107C5, WO...    46   0.62   1
(AC184365) Strongylocentrotus purpuratus clone R3-3122J24, W...    46   0.62   1
(AC178965) Strongylocentrotus purpuratus clone R3-3121O4, WO...    46   0.62   1
(AC178889) Strongylocentrotus purpuratus clone R3-1112H10, W...    46   0.62   1
(AC178731) Strongylocentrotus purpuratus clone R3-3002M6, WO...    46   0.62   1
(AC174740) Strongylocentrotus purpuratus clone R3-1024I4, WO...    46   0.62   1
(AC168773) Strongylocentrotus purpuratus clone R3-13N18, WOR...    46   0.62   1
(AC020962) Mus musculus clone RP21-126H5, WORKING DRAFT SEQU...    46   0.62   1
(AC018065) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   0.62   1
(AC014551) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   0.62   1
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    46   0.62   1
(AZ194372) SP_1026_A2_E03_T7A Strongylocentrotus purpuratus,...    46   0.62   1
(FI401523) CH322-126A11.y CHORI-322 Drosophila melanogaster ...    46   0.62   1
(DX987831) CHORI103-7E20.TJ CHORI103 Schistosoma mansoni gen...    46   0.62   1
(DX546546) GH_MBb0040J17r GH_MBb Gossypium hirsutum genomic ...    46   0.62   1
(AL409536) T7 end of clone AV0AA015E04 of library AV0AA from...    46   0.62   1
(AL346384) Tetraodon nigroviridis genome survey sequence T3 ...    46   0.62   1
(CT057399) Sus scrofa genomic clone PigE-127C10, genomic sur...    46   0.62   1
(CL142906) ISB1-120P24_Sp6.1 ISB1 Xenopus (Silurana) tropica...    46   0.62   1
(EL446978) CHTM25764.b1_G09.ab1 CHT(LMS) Jerusalem artichoke...    46   0.62   1
(EE255317) RFAA713TH Castor bean cDNA library from flowers,8...    46   0.62   1
(CT784077) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   0.62   1
(AJ750192) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    46   0.62   1
(BW936385) Branchiostoma floridae cDNA, neurula clone:bfne08...    46   0.62   1
(BW500723) Ciona intestinalis cDNA, clone:cima054c06, 3'end,...    46   0.62   1
(BW496433) Ciona intestinalis cDNA, clone:cima041c02, 3'end,...    46   0.62   1
(GE499019) CCFT1516.g1_H20.ab1 CCF(STU) sunflower Helianthus...    46   0.62   1
(FK188941) XABT204011.g1 Gateway compatible cien cDNA librar...    46   0.62   1
(FF919425) CBWU60827.g1 Yutaka Satou unpublished cDNA librar...    46   0.62   1
(FF732114) XABT46334.rev Gateway compatible cien cDNA librar...    46   0.62   1
(FF521312) G710P5246RD2.T0 Acorn worm normalized juvenile pE...    46   0.62   1
(FE055174) LV_ES_RA22E14r Litopenaeus vannamei eyestalk cDNA...    46   0.62   1
(EY067661) CATF9952.fwd CATF Artemisia annua, Tanzanian, fro...    46   0.62   1
(EY067660) CATF9952.rev CATF Artemisia annua, Tanzanian, fro...    46   0.62   1
(EY039736) CAIY4848.rev CAIY Artemisia annua leaf Artemisia ...    46   0.62   1
(EX852833) CBNC9793.rev CBNC Phycomyces blakesleeanus NRRL15...    46   0.62   1
(EX829065) CBNB1597.fwd CBNB Phycomyces blakesleeanus NRRL15...    46   0.62   1
(EX829064) CBNB1597.rev CBNB Phycomyces blakesleeanus NRRL15...    46   0.62   1
(CP001019) Coxiella burnetii CbuG_Q212, complete genome.           46   0.62   1
(BH151019) ENTQP71TR Entamoeba histolytica Sheared DNA Entam...    34   0.64   2
(EJ106777) 1092343139609 Global-Ocean-Sampling_GS-27-01-01-1...    42   0.65   2
(AC233669) Medicago truncatula, pooled multiple clones, *** ...    44   0.66   3
(AF102575) Dictyostelium discoideum cell surface protein DTF...    44   0.74   2
(AC189196) Brassica rapa subsp. pekinensis clone KBrB004G11,...    44   0.80   3
(BX538350) Cryptosporidium parvum chromosome 6, complete seq...    38   0.89   4
(AC126469) Homo sapiens 3 BAC RP11-644C3 (Roswell Park Cance...    44   0.90   2
(AC192296) Rhesus Macaque  BAC CH250-42A15 () complete seque...    36   0.93   4
(AR545986) Sequence 1117 from patent US 6747137.                   42   0.97   2
(BJ324843) Dictyostelium discoideum cDNA clone:dda8h07, 5' e...    30   1.1    3
(AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W...    34   1.3    2
(BJ326161) Dictyostelium discoideum cDNA clone:dda15c14, 5' ...    30   1.3    3
(AC120916) Rattus norvegicus clone CH230-506E13, WORKING DRA...    44   1.3    2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   1.3    4
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   1.3    12
(CQ605039) Sequence 32797 from Patent WO0171042.                   36   1.4    2
(BX005446) Mouse DNA sequence from clone RP23-20G23 on chrom...    34   1.4    3
(AC142898) Rhesus Macaque  BAC CH250-271K24 () complete sequ...    36   1.5    3
(AC190287) Macaca mulatta clone CH250-293C5, WORKING DRAFT S...    36   1.5    3
(AC179406) Strongylocentrotus purpuratus clone R3-60P19, WOR...    44   1.6    2
(AC194357) Zea mays chromosome 4 clone CH201-19C24; ZMMBBc00...    44   1.6    3
(AQ541618) RPCI-11-359N20.TJ RPCI-11 Homo sapiens genomic cl...    40   1.6    2
(AC185521) Zea mays chromosome 4 clone CH201-118J13; ZMMBBc0...    42   1.6    2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    40   1.6    2
(AC112630) Rattus norvegicus clone CH230-170L6, WORKING DRAF...    44   1.7    2
(AC165491) Bos taurus clone CH240-172J24, WORKING DRAFT SEQU...    38   1.8    2
(AQ541622) RPCI-11-359N22.TJ RPCI-11 Homo sapiens genomic cl...    40   1.8    2
(EK208190) 1095460089116 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.8    2
(AC129444) Rattus norvegicus clone CH230-31P1, WORKING DRAFT...    44   1.9    2
(AC149922) Strongylocentrotus purpuratus clone R3-13I1, WORK...    44   1.9    3
(FP236469) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.0    3
(CQ600107) Sequence 27865 from Patent WO0171042.                   36   2.0    4
(AC107401) Homo sapiens BAC clone RP11-813N20 from 4, comple...    38   2.3    3
(CT025860) Zebrafish DNA sequence from clone CH73-302A13 in ...    34   2.3    5
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    38   2.3    12
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    38   2.3    12
(AC132736) Rattus norvegicus clone CH230-49A10, *** SEQUENCI...    44   2.4    3
(AR584244) Sequence 1 from patent US 6797466.                      34   2.4    9
(AR271569) Sequence 1 from patent US 6503729.                      34   2.4    9
(AL929374) Zebrafish DNA sequence from clone CH211-89M7 in l...    44   2.4    1
(BK006558) TPA_inf: Medicago truncatula ARO1-like protein 1 ...    44   2.4    1
(AC163292) Mus musculus BAC clone RP23-241P22 from chromosom...    44   2.4    1
(AC160980) Mus musculus BAC clone RP23-386F19 from chromosom...    44   2.4    1
(AC157599) Mus musculus BAC clone RP23-138L13 from chromosom...    44   2.4    1
(AL954227) Pan troglodytes chromosome 22 BAC RP43-002I19.          44   2.4    1
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    44   2.4    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    44   2.4    1
(EU973851) Zea mays clone 421943 mRNA sequence.                    44   2.4    1
(EU959293) Zea mays clone 214479 thioredoxin H-type mRNA, co...    44   2.4    1
(EU954106) Zea mays clone 1455829 thioredoxin H-type mRNA, c...    44   2.4    1
(BT041195) Zea mays full-length cDNA clone ZM_BFc0185G18 mRN...    44   2.4    1
(AY663335) Brachythecium appleyardiae Rps4 (rps4) gene, part...    44   2.4    1
(AP010448) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   2.4    1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    44   2.4    1
(AM439785) Vitis vinifera contig VV78X271099.2, whole genome...    44   2.4    1
(AK243091) Oryza sativa Japonica Group cDNA, clone: J100022N...    44   2.4    1
(AC216676) Populus trichocarpa clone POP046-B08, complete se...    44   2.4    1
(AC209194) Populus trichocarpa clone POP091-C08, complete se...    44   2.4    1
(AC087549) Oryza sativa Japonica Group chromosome 10 clone n...    44   2.4    1
(FB787883) Sequence 7156 from Patent WO2008034648.                 44   2.4    1
(FB783014) Sequence 2287 from Patent WO2008034648.                 44   2.4    1
(DJ441099) Breast Cancer Biomarkers.                               44   2.4    1
(DD379177) Polymorphic markers in Rice, and use thereof.           44   2.4    1
(DD004563) Human Genes And Gene Expression Products.               44   2.4    1
(CS200150) Sequence 31 from Patent WO2005106044.                   44   2.4    1
(CQ343612) Sequence 17706 from Patent WO0157275.                   44   2.4    1
(CQ330889) Sequence 4983 from Patent WO0157275.                    44   2.4    1
(CQ306551) Sequence 17656 from Patent WO0186003.                   44   2.4    1
(CQ294047) Sequence 5152 from Patent WO0186003.                    44   2.4    1
(CQ269501) Sequence 17762 from Patent WO0157277.                   44   2.4    1
(CQ256936) Sequence 5197 from Patent WO0157277.                    44   2.4    1
(CQ231327) Sequence 18166 from Patent WO0157273.                   44   2.4    1
(CQ218335) Sequence 5174 from Patent WO0157273.                    44   2.4    1
(CQ207851) Sequence 10128 from Patent WO0157271.                   44   2.4    1
(CQ202749) Sequence 5026 from Patent WO0157271.                    44   2.4    1
(CQ183455) Sequence 14851 from Patent WO0157274.                   44   2.4    1
(CQ173580) Sequence 4976 from Patent WO0157274.                    44   2.4    1
(CQ148071) Sequence 18093 from Patent WO0157276.                   44   2.4    1
(CQ135061) Sequence 5083 from Patent WO0157276.                    44   2.4    1
(CQ109420) Sequence 18279 from Patent WO0157272.                   44   2.4    1
(CQ096298) Sequence 5157 from Patent WO0157272.                    44   2.4    1
(CQ078450) Sequence 14250 from Patent WO0157278.                   44   2.4    1
(CQ069270) Sequence 5070 from Patent WO0157278.                    44   2.4    1
(CQ059038) Sequence 9858 from Patent WO0157270.                    44   2.4    1
(CQ054059) Sequence 4879 from Patent WO0157270.                    44   2.4    1
(AX386114) Sequence 1042 from Patent WO0214500.                    44   2.4    1
(AR553887) Sequence 9018 from patent US 6747137.                   44   2.4    1
(AR552598) Sequence 7729 from patent US 6747137.                   44   2.4    1
(AR552115) Sequence 7246 from patent US 6747137.                   44   2.4    1
(AR549771) Sequence 4902 from patent US 6747137.                   44   2.4    1
(AR548707) Sequence 3838 from patent US 6747137.                   44   2.4    1
(DQ864325) Trypanosomatidae sp. 72BR-B trans-spliced leader ...    44   2.4    1
(DQ860234) Trypanosomatidae sp. 60LI trans-spliced leader se...    44   2.4    1
(AF132924) Trypanosoma sp. Eslu 12 12S ribosomal RNA gene, p...    44   2.4    1
(AF132922) Trypanosoma sp. Eslu 10 12S ribosomal RNA gene, p...    44   2.4    1
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    44   2.4    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    44   2.4    1
(AC171130) Helobdella robusta clone CH306-1A12, complete seq...    44   2.4    1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    44   2.4    1
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    44   2.4    1
(AC099015) Drosophila melanogaster, chromosome 2R, region 48...    44   2.4    1
(AC005465) Drosophila melanogaster, chromosome 2R, region 48...    44   2.4    1
(AP003493) Homo sapiens genomic DNA, chromosome 8q23, clone:...    44   2.4    1
(AL163280) Homo sapiens chromosome 21 segment HS21C080.            44   2.4    1
(AF064860) Homo sapiens chromosome 21 clone PAC 70I24 map 21...    44   2.4    1
(AC023590) Homo sapiens chromosome 8, clone RP11-655M22, com...    44   2.4    1
(AC020979) Homo sapiens chromosome 5 clone RP1_166C2, comple...    44   2.4    1
(AC158076) Bos taurus clone CH240-53D14, WORKING DRAFT SEQUE...    44   2.4    1
(AC149953) Strongylocentrotus purpuratus clone R3-32B17, WOR...    44   2.4    1
(AC144962) Xenopus (Silurana) tropicalis clone ISB-342I1, WO...    44   2.4    1
(AC114835) Rattus norvegicus clone CH230-118B15, *** SEQUENC...    44   2.4    1
(AC114790) Homo sapiens chromosome UNK clone RP11-656N17, **...    44   2.4    1
(AC110505) Mus musculus chromosome 13 clone RP24-574L8 map 1...    44   2.4    1
(AC105623) Rattus norvegicus clone CH230-115G22, WORKING DRA...    44   2.4    1
(AC098984) Rattus norvegicus clone CH230-47I23, *** SEQUENCI...    44   2.4    1
(CU606895) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    1
(CU302312) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    1
(AP009108) Marchantia polymorpha genomic DNA, chromosome Y, ...    44   2.4    1
(AP009102) Marchantia polymorpha genomic DNA, chromosome Y, ...    44   2.4    1
(AP009095) Marchantia polymorpha genomic DNA, chromosome Y, ...    44   2.4    1
(AL732359) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    44   2.4    1
(AC233367) Solanum tuberosum chromosome 5 clone RH027O19, **...    44   2.4    1
(AC223975) Bos taurus clone CH240-452P18, WORKING DRAFT SEQU...    44   2.4    1
(AC220686) Bos taurus clone CH240-349M1, WORKING DRAFT SEQUE...    44   2.4    1
(AC217748) Colobus guereza clone CH272-227C20, WORKING DRAFT...    44   2.4    1
(AC217098) Solanum tuberosum chromosome 6 clone RHPOTKEY044B...    44   2.4    1
(AC216482) Cavia porcellus clone CH234-56G5, WORKING DRAFT S...    44   2.4    1
(AC204781) Strongylocentrotus purpuratus clone CS-178508, WO...    44   2.4    1
(AC201410) Strongylocentrotus purpuratus clone R3-17N22, WOR...    44   2.4    1
(AC199256) Echinops telfairi clone CH238-463M2, WORKING DRAF...    44   2.4    1
(AC192885) Echinops telfairi clone CH238-214G6, WORKING DRAF...    44   2.4    1
(AC190508) Zea mays chromosome 2 clone CH201-43I1; ZMMBBc004...    44   2.4    1
(AC184678) Strongylocentrotus purpuratus clone R3-3107J14, W...    44   2.4    1
(AC184580) Strongylocentrotus purpuratus clone R3-3056O7, WO...    44   2.4    1
(AC184536) Strongylocentrotus purpuratus clone R3-4017B7, WO...    44   2.4    1
(AC184356) Strongylocentrotus purpuratus clone R3-3116G17, W...    44   2.4    1
(AC181798) Strongylocentrotus purpuratus clone R3-1029A15, W...    44   2.4    1
(AC181446) Strongylocentrotus purpuratus clone R3-1111N22, W...    44   2.4    1
(AC180886) Strongylocentrotus purpuratus clone R3-3064O15, W...    44   2.4    1
(AC180878) Strongylocentrotus purpuratus clone R3-3067P10, W...    44   2.4    1
(AC180695) Strongylocentrotus purpuratus clone R3-3087C08, W...    44   2.4    1
(AC180462) Strongylocentrotus purpuratus clone R3-3102E16, W...    44   2.4    1
(AC180379) Strongylocentrotus purpuratus clone R3-3113D23, W...    44   2.4    1
(AC180361) Strongylocentrotus purpuratus clone R3-3115B12, W...    44   2.4    1
(AC179970) Strongylocentrotus purpuratus clone R3-20D23, WOR...    44   2.4    1
(AC179673) Strongylocentrotus purpuratus clone R3-14I3, WORK...    44   2.4    1
(AC179285) Strongylocentrotus purpuratus clone R3-45I06, WOR...    44   2.4    1
(AC179223) Strongylocentrotus purpuratus clone R3-1107A20, W...    44   2.4    1
(AC179178) Strongylocentrotus purpuratus clone R3-4016L4, WO...    44   2.4    1
(AC179087) Strongylocentrotus purpuratus clone R3-4009K06, W...    44   2.4    1
(AC178904) Strongylocentrotus purpuratus clone R3-1112F3, WO...    44   2.4    1
(AC178756) Strongylocentrotus purpuratus clone R3-16O19, WOR...    44   2.4    1
(AC177777) Strongylocentrotus purpuratus clone R3-1002L11, W...    44   2.4    1
(AC177756) Strongylocentrotus purpuratus clone R3-1005O3, WO...    44   2.4    1
(AC177272) Strongylocentrotus purpuratus clone R3-44A7, WORK...    44   2.4    1
(AC176318) Strongylocentrotus purpuratus clone R3-3054G14, W...    44   2.4    1
(AC176298) Strongylocentrotus purpuratus clone R3-3006A05, W...    44   2.4    1
(AC174554) Strongylocentrotus purpuratus clone R3-1008C22, W...    44   2.4    1
(AC174535) Bos taurus clone CH240-93H19, WORKING DRAFT SEQUE...    44   2.4    1
(AC174503) Strongylocentrotus purpuratus clone R3-3029M20, W...    44   2.4    1
(AC173983) Strongylocentrotus purpuratus clone R3-3001M18, W...    44   2.4    1
(AC172958) Bos taurus clone CH240-278F18, WORKING DRAFT SEQU...    44   2.4    1
(AC170898) Mus musculus chromosome 17 clone RP23-404J11, WOR...    44   2.4    1
(AC168545) Strongylocentrotus purpuratus clone R3-3091K18, W...    44   2.4    1
(AC168444) Strongylocentrotus purpuratus clone R3-39C18, WOR...    44   2.4    1
(AC024352) Homo sapiens chromosome 8 clone RP11-767N13 map 8...    44   2.4    1
(AC024129) Oryza sativa Japonica Group chromosome 10 clone O...    44   2.4    1
(AC020325) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   2.4    1
(AZ518893) RPCI-11-252N6.TV RPCI-11 Homo sapiens genomic clo...    44   2.4    1
(ET663450) MUGQ_CH252P451O06T7_CH0103_017 CHORI-252 Vervet M...    44   2.4    1
(ET175206) MUGQ_CH252P379K12Sp6_CP714_038 CHORI-252 Vervet M...    44   2.4    1
(ER970997) AF__Bc0044J08r AF__Bc Aquilegia formosa genomic, ...    44   2.4    1
(ER970572) AF__Bc0041C11f AF__Bc Aquilegia formosa genomic, ...    44   2.4    1
(EK376009) 1095469439925 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.4    1
(EK103611) 1092963034871 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.4    1
(EK097807) 1092962050243 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.4    1
(EJ390369) 1092963915233 Global-Ocean-Sampling_GS-28-01-01-1...    44   2.4    1
(EJ178841) 1092344112005 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.4    1
(EI889156) CAH1-60K4TR CAA1Ba Cicer arietinum genomic clone ...    44   2.4    1
(EI889148) CAH1-60I10TR CAA1Ba Cicer arietinum genomic clone...    44   2.4    1
(EI726036) 2B421023C20TR BAC library from breast tumor sampl...    44   2.4    1
(EI032545) hgz0007cc11.b1 hgz Oryza alta genomic clone hgz00...    44   2.4    1
(EF770122) Mus musculus C57BL/6N IST10723C4HMF1 gene trap em...    44   2.4    1
(ED025190) SBA021_F07.r Sugar beet BAC library USH20 (Code S...    44   2.4    1
(ED025117) SBA021_B22.r Sugar beet BAC library USH20 (Code S...    44   2.4    1
(DX981138) SBA009_K13.r Sugar beet BAC library USH20 (Code S...    44   2.4    1
(DX905209) KBrH039I01R KBrH, Brassica rapa HindIII BAC libra...    44   2.4    1
(DX077215) KBrB088L21R KBrB, Brassica rapa BamHI BAC library...    44   2.4    1
(DX066297) KBrB074F13F KBrB, Brassica rapa BamHI BAC library...    44   2.4    1
(DU987098) KBrH079I03R KBrH (HindIII) BAC library Brassica r...    44   2.4    1
(CZ290172) cp68d04.f Candida parapsilosis Random Genomic Lib...    44   2.4    1
(CZ279467) cp05g07.r Candida parapsilosis Random Genomic Lib...    44   2.4    1
(CW953982) TcB40.2_A02_SP6 Tribolium BAC library Tribolium c...    44   2.4    1
(CW953930) TcB40.1_F12_SP6 Tribolium BAC library Tribolium c...    44   2.4    1
(CW671983) OG_BBa0031G06.r OG_BBa Oryza glaberrima genomic c...    44   2.4    1
(CW497755) fsbb001f290k17k0 Sorghum methylation filtered lib...    44   2.4    1
(CL978028) OsIFCC044428 Oryza sativa Express Library Oryza s...    44   2.4    1
(AG948914) Drosophila ananassae DNA, clone: DNB1-027N22.F.fa...    44   2.4    1
(CG283973) OG0DA02TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   2.4    1
(CG283960) OG0DA02TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   2.4    1
(CE266499) tigr-gss-dog-17000337099322 Dog Library Canis lup...    44   2.4    1
(CC726455) OGUEW69TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   2.4    1
(CC692818) OGLAS59TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   2.4    1
(CC640751) OGUHP08TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   2.4    1
(BZ987724) PUDDJ94TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   2.4    1
(EL443662) CHTM2060.b1_H11.ab1 CHT(LMS) Jerusalem artichoke ...    44   2.4    1
(EH720599) CNML7017.b1_B03.ab1 CNM(LMS) spotted knapweed Cen...    44   2.4    1
(EG977073) GLL042_B08_031 Cyamopsis tetragonoloba (L.) Taub ...    44   2.4    1
(EG975768) GLL02_E01_004 Cyamopsis tetragonoloba (L.) Taub s...    44   2.4    1
(EE590481) NEW_RNG04-H3 Rice mixture of leaf, root, panicle ...    44   2.4    1
(EE189781) ZM_BFc0185G18.f ZM_BFc Zea mays cDNA clone ZM_BFc...    44   2.4    1
(AV418929) Lotus japonicus cDNA clone:MWM163h11_r, 5' end.         44   2.4    1
(EB408138) ZM_BFb0320M11.f ZM_BFb Zea mays cDNA 3', mRNA seq...    44   2.4    1
(DW967959) MSAM277231_3674_1744 LCM-dissected maize shoot ap...    44   2.4    1
(DW759557) MSAM106131_0248_0470 LCM-dissected maize shoot ap...    44   2.4    1
(DV357277) NABZ386TO Aedes aegypti infected with Plasmodium ...    44   2.4    1
(DV357276) NABZ386TF Aedes aegypti infected with Plasmodium ...    44   2.4    1
(DV256128) AEDAD73TO Aedes re-sequencing Aedes aegypti cDNA ...    44   2.4    1
(DV256126) AEDAD73TF Aedes re-sequencing Aedes aegypti cDNA ...    44   2.4    1
(DV137676) CV03117B2F08.f1 CV03-normalized library Euphorbia...    44   2.4    1
(DT767063) EST1200912 Aquilegia cDNA library Aquilegia formo...    44   2.4    1
(DT755080) EST1188929 Aquilegia cDNA library Aquilegia formo...    44   2.4    1
(DT750994) EST1184843 Aquilegia cDNA library Aquilegia formo...    44   2.4    1
(AU284724) Dictyostelium discoideum gamete cDNA clone:FC-BI1...    44   2.4    1
(DR928186) EST1119725 Aquilegia cDNA library Aquilegia formo...    44   2.4    1
(DR923694) EST1115233 Aquilegia cDNA library Aquilegia formo...    44   2.4    1
(DR400606) TKN060D12_628734 Taraxacum kok-saghyz root cDNA l...    44   2.4    1
(DR399047) TKN096H06_634950 Taraxacum kok-saghyz root cDNA l...    44   2.4    1
(DN564657) 90838967 Sea Urchin primary mesenchyme cell cDNA ...    44   2.4    1
(DB892832) Populus nigra mRNA, clone: PnFL2-103_B24, 5'end.        44   2.4    1
(AU082707) Oryza sativa Japonica Group cDNA, partial sequenc...    44   2.4    1
(AU061718) Dictyostelium discoideum slug cDNA, clone SLF548.       44   2.4    1
(AU060491) Dictyostelium discoideum slug cDNA, clone SLK123.       44   2.4    1
(AU039005) Dictyostelium discoideum slug cDNA, clone SSM263.       44   2.4    1
(AU034872) Dictyostelium discoideum slug cDNA, clone SLE624.       44   2.4    1
(CX549534) MHAM13C_D11_T3_090.seq MHAM2 Medicago truncatula/...    44   2.4    1
(CX535362) s13dNF85C04MJ034_388893 Methyl Jasmonate-Elicited...    44   2.4    1
(CV723053) root--02-F20.g1 Rice root lambda phage cDNA libra...    44   2.4    1
(CJ768104) Ipomoea nil cDNA clone:jmsf51h08, 3' end.               44   2.4    1
(CJ765132) Ipomoea nil cDNA clone:jmsf35i11, 3' end.               44   2.4    1
(CI997489) Marsupenaeus japonicus cDNA, clone:YAQ01A01NGRM00...    44   2.4    1
(CI545088) Oryza sativa Japonica Group cDNA, clone: J10B0030...    44   2.4    1
(CI542950) Oryza sativa Japonica Group cDNA, clone: J10B0022...    44   2.4    1
(CA758226) OE19F09_T3.ab1 OE Oryza sativa Indica Group cDNA ...    44   2.4    1
(CA757411) OD105C05_T3.CRO OD Oryza sativa Indica Group cDNA...    44   2.4    1
(CA623861) wl1n.pk0109.d6 wl1n Triticum aestivum cDNA clone ...    44   2.4    1
(BW652158) Glycine max cDNA clone: GMFL01-03-M13, 5'end.           44   2.4    1
(BU015955) QHE11L02.yg.ab1 QH_EFGHJ sunflower RHA280 Heliant...    44   2.4    1
(BQ255249) MTNAK78TKM KVKC Medicago truncatula cDNA clone pK...    44   2.4    1
(BJ445732) Dictyostelium discoideum cDNA clone:ddv60p07, 3' ...    44   2.4    1
(BJ434257) Dictyostelium discoideum cDNA clone:ddv16h07, 3' ...    44   2.4    1
(BJ427410) Dictyostelium discoideum cDNA clone:ddv62h09, 5' ...    44   2.4    1
(BJ425946) Dictyostelium discoideum cDNA clone:ddv57i16, 5' ...    44   2.4    1
(BJ422406) Dictyostelium discoideum cDNA clone:ddv45f24, 5' ...    44   2.4    1
(BJ421015) Dictyostelium discoideum cDNA clone:ddv41m11, 5' ...    44   2.4    1
(BJ420564) Dictyostelium discoideum cDNA clone:ddv39o15, 5' ...    44   2.4    1
(BJ397637) Dictyostelium discoideum cDNA clone:dds47c06, 5' ...    44   2.4    1
(BJ397562) Dictyostelium discoideum cDNA clone:dds46c20, 5' ...    44   2.4    1
(BJ394330) Dictyostelium discoideum cDNA clone:dds34o16, 5' ...    44   2.4    1
(BJ370951) Dictyostelium discoideum cDNA clone:ddc56g01, 5' ...    44   2.4    1
(BJ370440) Dictyostelium discoideum cDNA clone:ddc54k05, 5' ...    44   2.4    1
(BJ367251) Dictyostelium discoideum cDNA clone:ddc41p21, 5' ...    44   2.4    1
(BJ365310) Dictyostelium discoideum cDNA clone:ddc34l19, 5' ...    44   2.4    1
(BJ365051) Dictyostelium discoideum cDNA clone:ddc33p22, 5' ...    44   2.4    1
(BJ344644) Dictyostelium discoideum cDNA clone:dda20c03, 3' ...    44   2.4    1
(BJ339237) Dictyostelium discoideum cDNA clone:dda64j15, 5' ...    44   2.4    1
(BJ338792) Dictyostelium discoideum cDNA clone:dda63f06, 5' ...    44   2.4    1
(BJ338736) Dictyostelium discoideum cDNA clone:dda62f19, 5' ...    44   2.4    1
(BJ338212) Dictyostelium discoideum cDNA clone:dda60c16, 5' ...    44   2.4    1
(BJ337647) Dictyostelium discoideum cDNA clone:dda58o06, 5' ...    44   2.4    1
(BJ336338) Dictyostelium discoideum cDNA clone:dda53e17, 5' ...    44   2.4    1
(BJ335707) Dictyostelium discoideum cDNA clone:dda51b11, 5' ...    44   2.4    1
(BJ332908) Dictyostelium discoideum cDNA clone:dda40f07, 5' ...    44   2.4    1
(BJ326038) Dictyostelium discoideum cDNA clone:dda3c15, 5' e...    44   2.4    1
(BJ324119) Dictyostelium discoideum cDNA clone:dda4k20, 5' e...    44   2.4    1
(BG139053) EST479495 wild tomato pollen Solanum pennellii cD...    44   2.4    1
(BG138746) EST479188 wild tomato pollen Solanum pennellii cD...    44   2.4    1
(AA629510) MU000123.Y2R SmL Schistosoma mansoni cDNA clone M...    44   2.4    1
(BF648097) NF044C02EC1F1017 Elicited cell culture Medicago t...    44   2.4    1
(BE240125) EST404174 MHRP- Medicago truncatula cDNA clone pM...    44   2.4    1
(GH196651) FCMI-PM-1173 WSSV infected Penaeus monodon cDNA l...    44   2.4    1
(GE505060) CCFT4611.g1_E01.ab1 CCF(STU) sunflower Helianthus...    44   2.4    1
(GE497018) CCFS7760.b1_O19.ab1 CCF(STU) sunflower Helianthus...    44   2.4    1
(FL995624) CCHY23764.b1 CCHY Panicum virgatum callus (N) Pan...    44   2.4    1
(FL697547) CCGA5357.b1 CCGA Panicum virgatum apex + stem (H)...    44   2.4    1
(FL478988) 25201871 CERES-213 Zea mays cDNA clone 323279 3',...    44   2.4    1
(FL445825) 2021528 CERES-191 Zea mays cDNA clone 214479 3', ...    44   2.4    1
(FL443261) 25667213 CERES-214 Zea mays cDNA clone 421943 3',...    44   2.4    1
(FL438856) 25240318 CERES-CN31 Zea mays cDNA clone 1455829 3...    44   2.4    1
(FF660692) G826P52FA6.T0 Acorn worm normalized juvenile pExp...    44   2.4    1
(FF658029) G826P5283FH1.T0 Acorn worm normalized juvenile pE...    44   2.4    1
(FF651735) G826P5244FC2.T0 Acorn worm normalized juvenile pE...    44   2.4    1
(FF651646) G826P5243FF7.T0 Acorn worm normalized juvenile pE...    44   2.4    1
(FF529443) G710P5367RF6.T0 Acorn worm normalized juvenile pE...    44   2.4    1
(FF528557) G710P5355RB9.T0 Acorn worm normalized juvenile pE...    44   2.4    1
(FE837295) CCAG47107.b1 CCAG Petrolisthes cinctipes heart, g...    44   2.4    1
(FE793132) CCAG9604.b6 CCAG Petrolisthes cinctipes heart, gi...    44   2.4    1
(FE787457) CCAG15544.g1 CCAG Petrolisthes cinctipes heart, g...    44   2.4    1
(FE787456) CCAG15544.b7 CCAG Petrolisthes cinctipes heart, g...    44   2.4    1
(FE637682) CBYZ1147.b1 CBYZ Panicum virgatum Kanlow 4 day ol...    44   2.4    1
(FE618254) CBYY1347.b1 CBYY Panicum virgatum Kanlow crown Pa...    44   2.4    1
(FD413179) 1106515120213 Cryptosporidium muris (strain RN66)...    44   2.4    1
(FD388355) 1106121092404 Cryptosporidium muris (strain RN66)...    44   2.4    1
(AW695641) NF097C06ST1F1049 Developing stem Medicago truncat...    44   2.4    1
(AW690123) NF028F07ST1F1000 Developing stem Medicago truncat...    44   2.4    1
(AW689333) NF018A06ST1F1000 Developing stem Medicago truncat...    44   2.4    1
(EY093474) CAZI21236.fwd CAZI Artemisia annua normalized lea...    44   2.4    1
(EX860382) CBNF5454.fwd CBNF Phycomyces blakesleeanus NRRL15...    44   2.4    1
(EX860381) CBNF5454.rev CBNF Phycomyces blakesleeanus NRRL15...    44   2.4    1
(EX812993) CBNA3245.rev CBNA Phycomyces blakesleeanus NRRL15...    44   2.4    1
(EX148295) cr36_J10 Saffron (Crocus sativus) mature stigma l...    44   2.4    1
(EX146977) cr28_P02 Saffron (Crocus sativus) mature stigma l...    44   2.4    1
(EV118860) 0124172 Brassica napus Root library Brassica napu...    44   2.4    1
(ES560299) B79 Ascochyta rabiei induced library Cicer arieti...    44   2.4    1
(CP000742) Methanococcus vannielii SB, complete genome.            44   2.4    1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       44   2.4    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   2.5    6
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    32   2.6    4
(AX345368) Sequence 439 from Patent WO0200928.                     30   2.8    4
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   2.8    6
(AC212306) Solanum lycopersicum cv. Heinz 1706, chromosome 0...    40   3.0    2
(AC107209) Homo sapiens BAC clone RP11-4F12 from 2, complete...    32   3.2    4
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   3.2    6
(AX344551) Sequence 2 from Patent WO0200932.                       30   3.4    9
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   3.5    10
(CC516545) CH240_362C8.TARBAC13P2 CHORI-240 Bos taurus genom...    32   3.6    3
(AZ548557) ENTCX85TR Entamoeba histolytica Sheared DNA Entam...    32   3.7    3
(AC119789) Rattus norvegicus clone CH230-268I17, WORKING DRA...    38   3.7    4
(AL844509) Plasmodium falciparum chromosome 13.                    32   3.8    2
(AC087852) Oryza sativa chromosome 3 BAC OJ1124_H03 genomic ...    40   4.2    3
(AC093589) Homo sapiens BAC clone RP11-5K10 from 4, complete...    40   4.3    4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   4.4    9
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   4.4    9

>(AC116986) Dictyostelium discoideum chromosome 2 map 2234041-2567370
              strain AX4, complete sequence.
          Length = 333321

 Score =  507 bits (256), Expect = e-140
 Identities = 256/256 (100%)
 Strand = Plus / Minus


Query: 1      acaattggtggtaactgattatgatcaccaattaatataactctttttaaacctctactt 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220545 acaattggtggtaactgattatgatcaccaattaatataactctttttaaacctctactt 220486


Query: 61     atattattaccattaccattaccattatcatcgccatcaacaccaataattgcatcacca 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220485 atattattaccattaccattaccattatcatcgccatcaacaccaataattgcatcacca 220426


Query: 121    atttcatttgaatttaattgtaattgtaatggtataaaagattcaatatcagagatttga 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220425 atttcatttgaatttaattgtaattgtaatggtataaaagattcaatatcagagatttga 220366


Query: 181    gcagattcttccattaataaattatcaaatttaaaacctaatcttaataattcatttctt 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220365 gcagattcttccattaataaattatcaaatttaaaacctaatcttaataattcatttctt 220306


Query: 241    tttaaagcagcatgag 256
              ||||||||||||||||
Sbjct: 220305 tttaaagcagcatgag 220290

 Score = 50.1 bits (25), Expect = 0.040
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 62     tattattaccattaccattaccatt 86
              |||||||||||||||||||||||||
Sbjct: 100315 tattattaccattaccattaccatt 100291

 Score = 40.1 bits (20), Expect(6) = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 69     accattaccattaccattat 88
              ||||||||||||||||||||
Sbjct: 267946 accattaccattaccattat 267927

 Score = 32.2 bits (16), Expect(6) = 2.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus


Query: 30    aattaatataactcttttta 49
             ||||||||||| ||||||||
Sbjct: 55132 aattaatataaatcttttta 55151

 Score = 32.2 bits (16), Expect(6) = 2.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 156    aaaagattcaatatca 171
              ||||||||||||||||
Sbjct: 314821 aaaagattcaatatca 314836

 Score = 30.2 bits (15), Expect(6) = 2.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 76     ccattaccattatca 90
              |||||||||||||||
Sbjct: 173220 ccattaccattatca 173234

 Score = 28.2 bits (14), Expect(6) = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 198  taaattatcaaatt 211
            ||||||||||||||
Sbjct: 8016 taaattatcaaatt 8003

 Score = 28.2 bits (14), Expect(6) = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 117   accaatttcatttg 130
             ||||||||||||||
Sbjct: 44578 accaatttcatttg 44565

 Score = 28.2 bits (14), Expect(6) = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 61     atattattaccatt 74
              ||||||||||||||
Sbjct: 128581 atattattaccatt 128594

 Score = 28.2 bits (14), Expect(6) = 2.7
 Identities = 17/18 (94%)
 Strand = Plus / Plus


Query: 108    aattgcatcaccaatttc 125
              |||| |||||||||||||
Sbjct: 257437 aatttcatcaccaatttc 257454

 Score = 28.2 bits (14), Expect(6) = 2.7
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 94     ccatcaacaccaat 107
              ||||||||||||||
Sbjct: 257964 ccatcaacaccaat 257951

 Score = 26.3 bits (13), Expect(6) = 2.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 126   atttgaatttaat 138
             |||||||||||||
Sbjct: 42571 atttgaatttaat 42559

 Score = 26.3 bits (13), Expect(6) = 2.7
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 107    taattgcatcacc 119
              |||||||||||||
Sbjct: 185537 taattgcatcacc 185525

 Score = 26.3 bits (13), Expect(6) = 2.7
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 143    attgtaatggtat 155
              |||||||||||||
Sbjct: 274236 attgtaatggtat 274248

 Score = 32.2 bits (16), Expect(7) = 6.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 196   aataaattatcaaatt 211
             ||||||||||||||||
Sbjct: 24620 aataaattatcaaatt 24605

 Score = 32.2 bits (16), Expect(7) = 6.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 66     attaccattaccatta 81
              ||||||||||||||||
Sbjct: 220474 attaccattaccatta 220459

 Score = 28.2 bits (14), Expect(7) = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 136   aattgtaattgtaa 149
             ||||||||||||||
Sbjct: 67240 aattgtaattgtaa 67227

 Score = 28.2 bits (14), Expect(7) = 6.8
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 78     attaccattatcat 91
              ||||||||||||||
Sbjct: 175811 attaccattatcat 175798

 Score = 26.3 bits (13), Expect(7) = 6.8
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 128    ttgaatttaattg 140
              |||||||||||||
Sbjct: 119547 ttgaatttaattg 119535

 Score = 26.3 bits (13), Expect(7) = 6.8
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 114    atcaccaatttca 126
              |||||||||||||
Sbjct: 133867 atcaccaatttca 133855

 Score = 26.3 bits (13), Expect(7) = 6.8
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 94     ccatcaacaccaa 106
              |||||||||||||
Sbjct: 133920 ccatcaacaccaa 133908

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 384,341,551
Number of extensions: 24081419
Number of successful extensions: 2250304
Number of sequences better than 10.0: 892
Length of query: 256
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 233
Effective length of database: 99,442,330,388
Effective search space: 23170062980404
Effective search space used: 23170062980404
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Contig-U03328-1Q.Seq.d
         (256 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromoso...   117   1e-25
AC005499_3(AC005499|pid:none) Arabidopsis thaliana chromosome 2 ...    75   7e-13
AY099864_1(AY099864|pid:none) Arabidopsis thaliana unknown prote...    75   7e-13
AC103551_11(AC103551|pid:none) Oryza sativa chromosome 3 BAC OSJ...    75   7e-13
EF553519_1(EF553519|pid:none) Homo sapiens clone DKFZp686B23123 ...    73   4e-12
(O60306) RecName: Full=Intron-binding protein aquarius; AltName:...    73   4e-12
BC108262_1(BC108262|pid:none) Homo sapiens aquarius homolog (mou...    73   4e-12
BC036913_1(BC036913|pid:none) Homo sapiens aquarius homolog (mou...    73   4e-12
BC042479_1(BC042479|pid:none) Mus musculus aquarius, mRNA (cDNA ...    73   4e-12
AB172202_1(AB172202|pid:none) Macaca fascicularis brain cDNA clo...    73   4e-12
AB011132_1(AB011132|pid:none) Homo sapiens mRNA for KIAA0560 pro...    73   4e-12
(Q8CFQ3) RecName: Full=Intron-binding protein aquarius;  &AK1455...    73   4e-12
T00333(T00333)hypothetical protein KIAA0560 - human                    73   4e-12
BC140525_1(BC140525|pid:none) Bos taurus aquarius homolog (mouse...    73   4e-12
BC133727_1(BC133727|pid:none) Rattus norvegicus aquarius homolog...    73   4e-12
AY129431_1(AY129431|pid:none) Drosophila melanogaster GM03621 fu...    72   5e-12
AE014297_1439(AE014297|pid:none) Drosophila melanogaster chromos...    72   5e-12
BC160661_1(BC160661|pid:none) Danio rerio zgc:63611, mRNA (cDNA ...    72   6e-12
BC166050_1(BC166050|pid:none) Xenopus laevis hypothetical protei...    72   6e-12
AL132853_2(AL132853|pid:none) Caenorhabditis elegans YAC Y80D3A,...    72   6e-12
CP000585_69(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 ...    69   7e-11
CR954205_63(CR954205|pid:none) Ostreococcus tauri strain OTTH059...    67   2e-10
AM270309_50(AM270309|pid:none) Aspergillus niger contig An14c001...    61   1e-08
CU633900_992(CU633900|pid:none) Podospora anserina genomic DNA c...    61   1e-08
AP007172_49(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ...    60   3e-08
AM910994_11(AM910994|pid:none) Plasmodium knowlesi strain H chro...    55   8e-07
CR382129_916(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    52   7e-06
CR940352_126(CR940352|pid:none) Theileria annulata strain Ankara...    42   0.005
CR382122_229(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    39   0.076
CU928168_666(CU928168|pid:none) Kluyveromyces thermotolerans str...    39   0.076
(Q00416) RecName: Full=Helicase SEN1;          EC=3.6.1.-; AltNa...    38   0.13
CR382122_260(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    37   0.29
(Q09820) RecName: Full=Regulator of nonsense transcripts 1 homol...    34   1.4
(Q9FJR0) RecName: Full=Regulator of nonsense transcripts 1 homol...    34   1.9
AF484122_1(AF484122|pid:none) Arabidopsis thaliana UPF1 mRNA, pa...    34   1.9
AP008213_1030(AP008213|pid:none) Oryza sativa (japonica cultivar...    33   2.4
CR382134_383(CR382134|pid:none) Debaryomyces hansenii strain CBS...    33   3.2
CR954208_299(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    32   7.1
CP000588_300(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...    32   9.2

>AC116986_82(AC116986|pid:none) Dictyostelium discoideum chromosome
           2 map 2234041-2567370 strain AX4, complete sequence.
          Length = 1033

 Score =  117 bits (293), Expect = 1e-25
 Identities = 64/84 (76%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 HAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQLQLNSNEXXXXXXXXXXXXXXXX 75
           HAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQLQLNSNE
Sbjct: 673 HAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQLQLNSNEIGDAIIGVDGDDNGNG 732

Query: 74  XXXXISRGLKRVILIGDHNQLPPI 3
               ISRGLKRVILIGDHNQLPPI
Sbjct: 733 NGNNISRGLKRVILIGDHNQLPPI 756

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 170,777,819
Number of extensions: 1444383
Number of successful extensions: 3002
Number of sequences better than 10.0: 44
Number of HSP's gapped: 2988
Number of HSP's successfully gapped: 75
Length of query: 85
Length of database: 1,061,185,681
Length adjustment: 55
Effective length of query: 30
Effective length of database: 881,421,041
Effective search space: 26442631230
Effective search space used: 26442631230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.93  gvh: 0.71  alm: 0.48  top: 0.27  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for Contig-U03328-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1