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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16517-1
Contig ID Contig-U16517-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16517-1 (Contig-U16517-1Q) /CSM_Contig/Contig-U16517-1Q.Seq.d
CACTGTTGGCCTACTGGTAGTTGTGAAAAAAACAAAAAAAAACAAAATAA
AAAAAAGAAAGAGATAGAAAATAAAAAATGAGTGGGAAGCAAATGGATGT
TATTGCATCCATCCAAGAATATATAAATAAAATTCTCACAAATATTCAAG
GCATGAAAGTTTTAGTTTTAGATAAAGAAACTGCAGGTATAGTGAGTATG
GTTTATACACAATCAGAAATTTTACAAAAAGAAGTATTCTTATTTGAAAA
GATTGAAAACACAAAAGAAAAAATGTTACATATGAAAGGTGTATATTTTA
TCAGACCAACACAAGAAAATATTCAATCAATTTGTGATGAATTAAAAGAC
CCAAAATTTAATAAATATCATTTATTTTTTACAAATACAATTTCAAAAGT
TTCATTAGATGAAATTGCAAAAGCAGATGAACAAGATGTAGTATCAGAGA
TTCAAGAATATTTCGGAGACTTTTTCGCAGTTAATCCAGATACATTCACA
TTGAATTTACCAGGAATGTTAACAAAGAAATCACCAAGATGGCAGGGTGA
TGTTGGCAGAGTTGTCGATGGATTATTCTCAAGTTTATTAGCATTGAAAA
AGAAACCTGTAATTCGTTATTCAAGTAATTCAGATACAACTCGTTATTTA
GCAGAGAAGATCACTGAA----------TGAAAAAGTTTATTGAAAATTA
TCCAAATTTCCAAAAATTCTCAACTACTGTATCAAAACATGTTTCGTTAA
TGGATGAATTAAATAGATTAATTTCATTAGATAATTTAATGGAGGTATCA
GAGGTACAACCAAGAATTAGCATGTAATCATGATCATAACAGTATTTATA
ATCATGTTTTAGAAATTGTAAATGATTCAAAATATACTGATAGAGATAAA
TTAGTATTAGTACTTTTATATAGTATTAGATATGAAGATGGTAGAGTTTG
GGAATTAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAAGAAATTG
GTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGT
GATTTATTAGGAACTAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTAA
ACGTGGTTTACAAGGTGTTTCAAATATTTATACTCAACATAAACCATTAT
TACATGATATTTTAGATAGTATTTTAAAGAACAAATTAAAAGAAACCTCT
TATCCATACTTATCAACAACTCAATCAAGAGAGAGACCACAAGATGTAAT
TATATTTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACCGTTTACA
CTTTTAATTCTTTAAATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACT
TCAATTTTAAATCGTGAACAATTTTTAGAAGATTTATCAAGTACTCAAAT
TTCTAATCCTTCTAGTAGTAGTGGTAGAAGATAAAAATAAAAAAATAAAA
AAATAATAATAATAATAATAATTTTAAAAAAAAAAAAAAAATAATAATAA
TTCTTAAATAAAATAATACAAAATAATTTACATTAAAATGAAAAAAAAAA
Gap gap included
Contig length 1540
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3759791
End point 3758281
Strand (PLUS/MINUS) MINUS
Number of clones 33
Number of EST 44
Link to clone list U16517
List of clone(s) 

est1=CHB225F,1,308
est2=SFH722F,7,576
est3=CFJ436F,15,615
est4=SLC604F,15,576
est5=SFF477F,19,459
est6=VFL537F,19,521
est7=CFJ234F,23,616
est8=CFJ252F,23,540
est9=SFC628F,23,372
est10=SSJ808F,25,668
est11=VFK543F,25,648
est12=VHA223F,26,630
est13=CHA440F,35,636
est14=SFI855F,36,576
est15=SFI755F,41,576
est16=CHA556F,47,539
est17=CHC751F,58,608
est18=SFI855Z,669,1414
est19=CHI228Z,679,1423
est20=SFB696Z,691,1413
est21=SFI755Z,694,1413
est22=VSH887E,703,1412
est23=CFJ234Z,705,1414
est24=SFC628Z,707,1442
est25=VHA223Z,709,1411
est26=CFJ726Z,710,1413
est27=SFF477Z,716,1425
est28=CHB225Z,735,1458
est29=SSC757Z,739,1484
est30=CFB249Z,747,1398
est31=VFK543Z,752,1453
est32=CFJ265Z,754,1413
est33=SSJ643Z,783,1468
est34=FC-BS11Z,789,1472
est35=CHA156Z,802,1167
est36=CHA840Z,887,1412
est37=SFH722Z,887,1391
est38=CHC751Z,906,1371
est39=SSJ808Z,908,1542
est40=CHE332Z,1044,1306
est41=AFB330Z,1123,1443
est42=SSH693Z,1191,1532
est43=AFI133Z,1242,1398
est44=CFB508Z,1257,1398
Translated Amino Acid sequence 
llayw*l*kkqkktk*kkerdrk*KMSGKQMDVIASIQEYINKILTNIQGMKVLVLDKET
AGIVSMVYTQSEILQKEVFLFEKIENTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFN
KYHLFFTNTISKVSLDEIAKADEQDVVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRW
QGDVGRVVDGLFSSLLALKKKPVIRYSSNSDTTRYLAEKITE---

---KKFIENYPNFQKFSTTVSKHVSLMDELNRLISLDNLMEVSEVQPRISM*s*s*qyl*
scfrnck*fkiy**r*isistfi*y*i*rw*slgikrkiikywysskrnwfn*yikricr
ckfkrr*firn*kyffickkcc*twftrcfkylyst*tiit*yfr*yfkeqikrnllsil
innsikrettrcnyiygwwyhl*rginrlhf*ffkywclsccirwyfnfks*tifrrfik
ysnf*sf***w*kikikk*knnnnnnnfkkkkkiiiilk*nntk*ftlk*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgsceknkkkqnkkkkeienkk*vgskwmllhpskni*ikfsqifka*kf*f*ikk
lqv**vwfihnqkfykkkysylkrlktqkkkcyi*kvyilsdqhkkifnqfvmn*ktqnl
iniiyflqiqfqkfh*mklqkqmnkm*yqrfknisetfsqliqihsh*iyqec*qrnhqd
grvmlaelsmdysqvy*h*krnl*fviqviqiqlvi*qrrsl---

---*ksllkiiqisknsqllyqnmfr*wmn*id*fh*ii*wryqrynqelacnhdhnsiy
nhvleivndskytdrdklvlvllysiryedgrvwelkeklssigippkeiglidtlrgya
gaslregdllgtknifsfarsvvkrglqgvsniytqhkpllhdildsilknklketsypy
lsttqsrerpqdviifmvggityeealtvytfnslntgvcrvvlggtsilnreqfledls
stqisnpssssgrr*k*knkkiiiiiiilkkkkk***flnkiiqnnlh*nekk

Frame B:
tvgllvvvkktkknkikkrkr*kikneweangcycihpriyk*nshkysrhesfsfr*rn
cryseyglytirnftkrsili*kd*khkrknvtyercifyqtntrkysinl**ikrpki*
*isfifykynfksfir*ncksr*trcsirdsrifrrlfrs*sryihieftrnvnkeitkm
ag*cwqscrwiilkfisieketcnslfk*frynslfsredh*---

---ekvy*klskfpkilnyciktcfvng*ik*infir*fnggirgttkn*hvimiitvfi
imf*kl*miqniliein*y*yfyivldmkmvefgn*kknyqvlvflqkklv*lih*edmq
vqv*ekviy*elkiffhlqevllnvvykvfqifilninhyymif*ivf*rtn*kkpliht
yqqlnqerdhkm*lylwlvvslmkrh*pftllil*ilvfvvly*vvlqf*ivnnf*kiyq
vlkflillvvvvedknkkikk******f*kkkknnnns*ik*ykiiyikmkkk

Frame C:
llayw*l*kkqkktk*kkerdrk*KMSGKQMDVIASIQEYINKILTNIQGMKVLVLDKET
AGIVSMVYTQSEILQKEVFLFEKIENTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFN
KYHLFFTNTISKVSLDEIAKADEQDVVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRW
QGDVGRVVDGLFSSLLALKKKPVIRYSSNSDTTRYLAEKITE---

---KKFIENYPNFQKFSTTVSKHVSLMDELNRLISLDNLMEVSEVQPRISM*s*s*qyl*
scfrnck*fkiy**r*isistfi*y*i*rw*slgikrkiikywysskrnwfn*yikricr
ckfkrr*firn*kyffickkcc*twftrcfkylyst*tiit*yfr*yfkeqikrnllsil
innsikrettrcnyiygwwyhl*rginrlhf*ffkywclsccirwyfnfks*tifrrfik
ysnf*sf***w*kikikk*knnnnnnnfkkkkkiiiilk*nntk*ftlk*kkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16517-1 (Contig-U16517-1Q)
/CSM_Contig/Contig-U16517-1Q.Seq.d
         (1550 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16517-1 (Contig-U16517-1Q) /CSM_Contig/Conti...  2234  0.0
Contig-U12638-1 (Contig-U12638-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U16204-1 (Contig-U16204-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U15752-1 (Contig-U15752-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U13458-1 (Contig-U13458-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U12776-1 (Contig-U12776-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U10391-1 (Contig-U10391-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U06339-1 (Contig-U06339-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U01337-1 (Contig-U01337-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U16403-1 (Contig-U16403-1Q) /CSM_Contig/Conti...    38  0.040

>Contig-U16517-1 (Contig-U16517-1Q) /CSM_Contig/Contig-U16517-1Q.Seq.d
          Length = 1550

 Score = 2234 bits (1127), Expect = 0.0
 Identities = 1157/1157 (100%)
 Strand = Plus / Plus

                                                                        
Query: 274  tgttacatatgaaaggtgtatattttatcagaccaacacaagaaaatattcaatcaattt 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274  tgttacatatgaaaggtgtatattttatcagaccaacacaagaaaatattcaatcaattt 333

                                                                        
Query: 334  gtgatgaattaaaagacccaaaatttaataaatatcatttattttttacaaatacaattt 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  gtgatgaattaaaagacccaaaatttaataaatatcatttattttttacaaatacaattt 393

                                                                        
Query: 394  caaaagtttcattagatgaaattgcaaaagcagatgaacaagatgtagtatcagagattc 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394  caaaagtttcattagatgaaattgcaaaagcagatgaacaagatgtagtatcagagattc 453

                                                                        
Query: 454  aagaatatttcggagactttttcgcagttaatccagatacattcacattgaatttaccag 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  aagaatatttcggagactttttcgcagttaatccagatacattcacattgaatttaccag 513

                                                                        
Query: 514  gaatgttaacaaagaaatcaccaagatggcagggtgatgttggcagagttgtcgatggat 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  gaatgttaacaaagaaatcaccaagatggcagggtgatgttggcagagttgtcgatggat 573

                                                                        
Query: 574  tattctcaagtttattagcattgaaaaagaaacctgtaattcgttattcaagtaattcag 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  tattctcaagtttattagcattgaaaaagaaacctgtaattcgttattcaagtaattcag 633

                                                                        
Query: 634  atacaactcgttatttagcagagaagatcactgaannnnnnnnnntgaaaaagtttattg 693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  atacaactcgttatttagcagagaagatcactgaannnnnnnnnntgaaaaagtttattg 693

                                                                        
Query: 694  aaaattatccaaatttccaaaaattctcaactactgtatcaaaacatgtttcgttaatgg 753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  aaaattatccaaatttccaaaaattctcaactactgtatcaaaacatgtttcgttaatgg 753

                                                                        
Query: 754  atgaattaaatagattaatttcattagataatttaatggaggtatcagaggtacaaccaa 813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  atgaattaaatagattaatttcattagataatttaatggaggtatcagaggtacaaccaa 813

                                                                        
Query: 814  gaattagcatgtaatcatgatcataacagtatttataatcatgttttagaaattgtaaat 873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  gaattagcatgtaatcatgatcataacagtatttataatcatgttttagaaattgtaaat 873

                                                                        
Query: 874  gattcaaaatatactgatagagataaattagtattagtacttttatatagtattagatat 933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  gattcaaaatatactgatagagataaattagtattagtacttttatatagtattagatat 933

                                                                        
Query: 934  gaagatggtagagtttgggaattaaaagaaaaattatcaagtattggtattcctccaaaa 993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  gaagatggtagagtttgggaattaaaagaaaaattatcaagtattggtattcctccaaaa 993

                                                                        
Query: 994  gaaattggtttaattgatacattaagaggatatgcaggtgcaagtttaagagaaggtgat 1053
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  gaaattggtttaattgatacattaagaggatatgcaggtgcaagtttaagagaaggtgat 1053

                                                                        
Query: 1054 ttattaggaactaaaaatattttttcatttgcaagaagtgttgttaaacgtggtttacaa 1113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ttattaggaactaaaaatattttttcatttgcaagaagtgttgttaaacgtggtttacaa 1113

                                                                        
Query: 1114 ggtgtttcaaatatttatactcaacataaaccattattacatgatattttagatagtatt 1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 ggtgtttcaaatatttatactcaacataaaccattattacatgatattttagatagtatt 1173

                                                                        
Query: 1174 ttaaagaacaaattaaaagaaacctcttatccatacttatcaacaactcaatcaagagag 1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 ttaaagaacaaattaaaagaaacctcttatccatacttatcaacaactcaatcaagagag 1233

                                                                        
Query: 1234 agaccacaagatgtaattatatttatggttggtggtatcacttatgaagaggcattaacc 1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 agaccacaagatgtaattatatttatggttggtggtatcacttatgaagaggcattaacc 1293

                                                                        
Query: 1294 gtttacacttttaattctttaaatactggtgtttgtcgtgttgtattaggtggtacttca 1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 gtttacacttttaattctttaaatactggtgtttgtcgtgttgtattaggtggtacttca 1353

                                                                        
Query: 1354 attttaaatcgtgaacaatttttagaagatttatcaagtactcaaatttctaatccttct 1413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 attttaaatcgtgaacaatttttagaagatttatcaagtactcaaatttctaatccttct 1413

                             
Query: 1414 agtagtagtggtagaag 1430
            |||||||||||||||||
Sbjct: 1414 agtagtagtggtagaag 1430


 Score =  291 bits (147), Expect = 2e-78
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                       
Query: 79  tgagtgggaagcaaatggatgttattgcatccatccaagaatatataaataaaattctca 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tgagtgggaagcaaatggatgttattgcatccatccaagaatatataaataaaattctca 138

                                                                       
Query: 139 caaatattcaaggcatgaaagttttagttttagataaagaaactgcaggtatagtgagta 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 caaatattcaaggcatgaaagttttagttttagataaagaaactgcaggtatagtgagta 198

                                      
Query: 199 tggtttatacacaatcagaaattttac 225
           |||||||||||||||||||||||||||
Sbjct: 199 tggtttatacacaatcagaaattttac 225


 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                             
Query: 1492 taataataattcttaaataaaataatacaaaataatttacattaaaatg 1540
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 taataataattcttaaataaaataatacaaaataatttacattaaaatg 1540


 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  cactgttggcctactggtagttgtg 25
          |||||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggtagttgtg 25


>Contig-U12638-1 (Contig-U12638-1Q) /CSM_Contig/Contig-U12638-1Q.Seq.d
          Length = 209

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  cactgttggcctactggtagt 21
          |||||||||||||||||||||
Sbjct: 1  cactgttggcctactggtagt 21


>Contig-U16204-1 (Contig-U16204-1Q) /CSM_Contig/Contig-U16204-1Q.Seq.d
          Length = 2024

 Score = 40.1 bits (20), Expect = 0.010
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 325  aatcaatttgtgatgaattaaaag 348
            |||||||||||||| |||||||||
Sbjct: 1734 aatcaatttgtgatcaattaaaag 1757


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,733
Number of Sequences: 8402
Number of extensions: 39733
Number of successful extensions: 5597
Number of sequences better than 10.0: 1066
length of query: 1550
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1534
effective length of database: 7,941,110
effective search space: 12181662740
effective search space used: 12181662740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.11
Homology vs DNA 
Query= Contig-U16517-1 (Contig-U16517-1Q) /CSM_Contig/Contig-U16517-1Q.Seq.d
         (1550 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ398296) Dictyostelium discoideum cDNA clone:dds11j20, 3' ...  1291   0.0    2
(BJ433571) Dictyostelium discoideum cDNA clone:ddv22e11, 3' ...  1229   0.0    2
(BJ343943) Dictyostelium discoideum cDNA clone:dda17n18, 3' ...  1229   0.0    1
(AU284987) Dictyostelium discoideum gamete cDNA clone:FC-BS1...  1225   0.0    1
(BJ399516) Dictyostelium discoideum cDNA clone:dds6g08, 3' e...  1211   0.0    2
(BJ380485) Dictyostelium discoideum cDNA clone:ddc38g08, 3' ...  1211   0.0    2
(BJ375655) Dictyostelium discoideum cDNA clone:ddc19a18, 3' ...  1211   0.0    2
(BJ402918) Dictyostelium discoideum cDNA clone:dds18n14, 3' ...  1205   0.0    2
(BJ375595) Dictyostelium discoideum cDNA clone:ddc19c10, 3' ...  1205   0.0    2
(BJ346208) Dictyostelium discoideum cDNA clone:dda30p02, 3' ...  1205   0.0    2
(BJ436439) Dictyostelium discoideum cDNA clone:ddv31m06, 3' ...  1203   0.0    2
(BJ377343) Dictyostelium discoideum cDNA clone:ddc24a08, 3' ...  1203   0.0    2
(BJ375857) Dictyostelium discoideum cDNA clone:ddc20d07, 3' ...  1197   0.0    2
(BJ344137) Dictyostelium discoideum cDNA clone:dda18e14, 3' ...  1191   0.0    2
(AU268130) Dictyostelium discoideum vegetative cDNA clone:VS...  1183   0.0    2
(BJ402917) Dictyostelium discoideum cDNA clone:dds18n13, 3' ...  1176   0.0    3
(BJ399231) Dictyostelium discoideum cDNA clone:dds4o24, 3' e...  1176   0.0    2
(BJ343048) Dictyostelium discoideum cDNA clone:dda1f24, 3' e...  1152   0.0    1
(C84093) Dictyostelium discoideum slug cDNA, clone SSC757.       1098   0.0    4
(BJ373527) Dictyostelium discoideum cDNA clone:ddc3a14, 3' e...  1098   0.0    3
(BJ344704) Dictyostelium discoideum cDNA clone:dda20p06, 3' ...  1098   0.0    3
(C90703) Dictyostelium discoideum slug cDNA, clone SSJ643.        954   0.0    3
(C91198) Dictyostelium discoideum slug cDNA, clone SSJ808.       1019   0.0    1
(BJ415353) Dictyostelium discoideum cDNA clone:ddv22e11, 5' ...   743   0.0    2
(AU268129) Dictyostelium discoideum vegetative cDNA clone:VS...   803   0.0    2
(BJ342930) Dictyostelium discoideum cDNA clone:dda15p09, 3' ...   914   0.0    2
(BJ417959) Dictyostelium discoideum cDNA clone:ddv31m06, 5' ...   708   0.0    2
(BJ402292) Dictyostelium discoideum cDNA clone:dds16l05, 3' ...   948   0.0    1
(BJ328949) Dictyostelium discoideum cDNA clone:dda30p02, 5' ...   694   0.0    3
(BJ362569) Dictyostelium discoideum cDNA clone:ddc22p10, 5' ...   696   0.0    2
(BJ329192) Dictyostelium discoideum cDNA clone:dda24j04, 5' ...   684   0.0    2
(BJ361900) Dictyostelium discoideum cDNA clone:ddc19c10, 5' ...   674   0.0    2
(BJ361919) Dictyostelium discoideum cDNA clone:ddc19h10, 5' ...   672   0.0    2
(BJ345144) Dictyostelium discoideum cDNA clone:dda21c19, 3' ...   626   0.0    3
(BJ363613) Dictyostelium discoideum cDNA clone:ddc27f13, 5' ...   658   0.0    3
(BJ327380) Dictyostelium discoideum cDNA clone:dda20p06, 5' ...   654   0.0    2
(BJ377298) Dictyostelium discoideum cDNA clone:ddc23p10, 3' ...   850   0.0    2
(BJ378152) Dictyostelium discoideum cDNA clone:ddc27f13, 3' ...   833   0.0    2
(BJ388768) Dictyostelium discoideum cDNA clone:dds16l05, 5' ...   601   0.0    3
(BJ389418) Dictyostelium discoideum cDNA clone:dds18n13, 5' ...   601   0.0    2
(BJ389419) Dictyostelium discoideum cDNA clone:dds18n14, 5' ...   601   0.0    2
(BJ326928) Dictyostelium discoideum cDNA clone:dda18e14, 5' ...   601   0.0    2
(BJ326150) Dictyostelium discoideum cDNA clone:dda15p09, 5' ...   601   0.0    2
(BJ326704) Dictyostelium discoideum cDNA clone:dda17n18, 5' ...   595   0.0    2
(AU061009) Dictyostelium discoideum slug cDNA, clone SLC604.      561   0.0    2
(BJ361976) Dictyostelium discoideum cDNA clone:ddc19g14, 5' ...   517   0.0    2
(BJ415966) Dictyostelium discoideum cDNA clone:ddv24i09, 5' ...   486   0.0    3
(BJ377128) Dictyostelium discoideum cDNA clone:ddc22o13, 3' ...   680   0.0    1
(BJ362832) Dictyostelium discoideum cDNA clone:ddc23o13, 5' ...   264   0.0    5
(BJ325650) Dictyostelium discoideum cDNA clone:dda1f24, 5' e...   420   0.0    2
(BJ387009) Dictyostelium discoideum cDNA clone:dds11j20, 5' ...   270   e-156  4
(BJ340697) Dictyostelium discoideum cDNA clone:dda3l07, 3' e...   464   e-153  3
(BJ327784) Dictyostelium discoideum cDNA clone:dda21c19, 5' ...   281   e-146  3
(BJ376893) Dictyostelium discoideum cDNA clone:ddc30p07, 3' ...   313   e-124  2
(AU038423) Dictyostelium discoideum slug cDNA, clone SSH693.      458   e-124  1
(BJ388592) Dictyostelium discoideum cDNA clone:dds6g08, 5' e...   270   e-115  2
(BJ362941) Dictyostelium discoideum cDNA clone:ddc24a08, 5' ...   270   5e-88  3
(AU074207) Dictyostelium discoideum slug cDNA, clone SSJ808.      270   1e-67  1
(BJ343802) Dictyostelium discoideum cDNA clone:dda17a09, 3' ...   123   1e-52  2
(BJ373828) Dictyostelium discoideum cDNA clone:ddc4o01, 3' e...   194   7e-45  1
(FE247167) CAPG9808.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(FE242678) CAPG7283.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(FE242464) CAPG718.rev CAPG Naegleria gruberi amoeba stage N...    56   0.004  1
(FE238226) CAPG4752.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(FE237083) CAPG4206.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(FE233816) CAPG2487.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(FE231438) CAPG1219.rev CAPG Naegleria gruberi amoeba stage ...    56   0.004  1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    34   0.013  21
(AP009698) Lotus japonicus genomic DNA, clone: LjT02O17, TM1...    54   0.017  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.027  18
(AB261099) Entamoeba histolytica gene for EhVps45B, partial ...    48   0.054  2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    36   0.060  13
(AC154211) Mus musculus BAC clone RP24-113P8 from 17, comple...    52   0.066  1
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    32   0.068  17
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    40   0.092  20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.12   14
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.15   15
(AC211097) Equus caballus clone CH241-522E7, WORKING DRAFT S...    38   0.17   6
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    32   0.19   20
(AM180355) Clostridium difficile 630 complete genome.              36   0.19   21
(AC155344) Brassica rapa subsp. pekinensis clone KBrH080A08,...    50   0.26   1
(AC172882) Brassica rapa subsp. campestris clone KBrH121H08,...    50   0.26   1
(EJ875696) 1093018368418 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.32   2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   0.34   14
(EJ354674) 1092963625964 Global-Ocean-Sampling_GS-28-01-01-1...    42   0.37   2
(EK055978) 1092960024354 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.40   2
(ER576982) 1093015815744 Global-Ocean-Sampling_GS-36-01-01-2...    42   0.41   2
(CU475569) Medicago truncatula chromosome 5 clone mte1-16h18...    32   0.51   8
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   0.57   18
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    40   0.59   12
(CP000727) Clostridium botulinum A str. Hall, complete genome.     38   0.84   19
(AC187312) Canis familiaris chromosome 6, clone XX-83K7, com...    44   0.85   3
(AC123654) Mus musculus chromosome 15, clone RP23-161D16, co...    34   0.85   9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    40   0.85   15
(CP000048) Borrelia hermsii DAH, complete genome.                  42   0.93   19
(CJ453895) Macaca fascicularis mRNA, clone: QflA-19614, 5' e...    34   0.95   3
(CJ452330) Macaca fascicularis mRNA, clone: QflA-17980, 5' e...    34   0.96   3
(AL845326) Zebrafish DNA sequence from clone CH211-191D15 in...    48   1.0    1
(AL935162) Mouse DNA sequence from clone RP24-463M4 on chrom...    48   1.0    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    48   1.0    1
(AP006146) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   1.0    1
(AP005474) Oryza sativa Japonica Group genomic DNA, chromoso...    48   1.0    1
(AP004799) Oryza sativa Japonica Group genomic DNA, chromoso...    48   1.0    1
(EA680074) Sequence 58953 from patent US 7365185.                  48   1.0    1
(AC152913) Sorghum bicolor chromosome 3 clone SB106M24, *** ...    48   1.0    1
(AC101878) Mus musculus clone RP23-372D22, WORKING DRAFT SEQ...    48   1.0    1
(CU855645) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.0    1
(AP008184) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   1.0    1
(EK476518) 1095469484668 Global-Ocean-Sampling_GS-32-01-01-1...    48   1.0    1
(EK023033) 1092955345557 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.0    1
(CW444204) fsbb001f164k24k0 Sorghum methylation filtered lib...    48   1.0    1
(CW388138) fsbb001f072m12f0 Sorghum methylation filtered lib...    48   1.0    1
(CW321269) 104_814_11475455_148_35938_088 Sorghum methylatio...    48   1.0    1
(CW321268) 104_814_11475455_116_35934_088 Sorghum methylatio...    48   1.0    1
(CL763111) OR_BBa0133H21.r OR_BBa Oryza nivara genomic clone...    48   1.0    1
(EL917713) NY4Th2_13_G02.b1_A039 NY4 theronts Ichthyophthiri...    48   1.0    1
(EC823908) SME00000638 esmbsro2 Sawyeria marylandensis cDNA,...    48   1.0    1
(EC818754) SME00006002 esmbsro2 Sawyeria marylandensis cDNA,...    48   1.0    1
(CJ438388) Macaca fascicularis mRNA, clone: QccE-15605, 5' e...    48   1.0    1
(FC520487) CBFU3948.rev CBFU Thalassiosira pseudonana Iron l...    48   1.0    1
(FC515795) CBFS653.rev CBFS Thalassiosira pseudonana silicat...    48   1.0    1
(CP000083) Colwellia psychrerythraea 34H, complete genome.         48   1.0    1
(AL844509) Plasmodium falciparum chromosome 13.                    36   1.1    16
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   1.1    10
(EK121812) 1092963620355 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.1    3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   1.1    19
(CU463316) Zebrafish DNA sequence from clone CH73-250A16 in ...    40   1.2    5
(AM658366) Entamoeba moshkovskii FIC GSS, clone mosh079h06.p1k.    36   1.2    3
(EA702571) Sequence 81450 from patent US 7365185.                  44   1.3    3
(EJ774710) 1092985200181 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.4    2
(BJ325531) Dictyostelium discoideum cDNA clone:dda1b12, 5' e...    32   1.4    3
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   1.4    15
(EJ768212) 1092963336449 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    2
(EU795178) Uncultured bacterium HF0010_09O16 genomic sequence.     42   1.7    5
(AC233458) Solanum tuberosum chromosome 5 clone RH092E19, **...    36   2.0    10
(AC160291) Bos taurus clone CH240-86F6, WORKING DRAFT SEQUEN...    36   2.0    2
(AC169545) Bos taurus clone CH240-245B18, WORKING DRAFT SEQU...    36   2.1    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   2.1    13
(BJ423343) Dictyostelium discoideum cDNA clone:ddv48k20, 5' ...    34   2.2    3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   2.4    13
(AC140035) Medicago truncatula clone mth2-25n18, complete se...    38   2.4    5
(EE068689) C3B01074 Clusters 4 cm (VvC3) Vitis vinifera cDNA...    36   2.6    3
(BJ415687) Dictyostelium discoideum cDNA clone:ddv23j10, 5' ...    34   2.6    3
(BJ327580) Dictyostelium discoideum cDNA clone:dda20o24, 5' ...    42   2.6    2
(ER316911) 1092344150463 Global-Ocean-Sampling_GS-34-01-01-1...    36   2.7    2
(ET820163) CHO_OF758xc09r1.ab1 CHO_OF Nicotiana tabacum geno...    36   2.8    2
(AJ294725) Astasia longa complete chloroplast genome.              36   3.1    7
(EC976877) WIN1032.C21_N05 Muscat Hamburg post-veraison peri...    36   3.3    3
(EC978745) WIN108.C21_M14 Muscat Hamburg post-veraison peric...    36   3.3    3
(AC011340) Homo sapiens chromosome 5 clone CTC-264H12, WORKI...    38   3.5    8
(BJ418575) Dictyostelium discoideum cDNA clone:ddv33c08, 5' ...    38   3.5    2
(DE318914) Bombyx mori genomic DNA, BAC clone:BES_617_F03.         38   3.6    2
(CJ452325) Macaca fascicularis mRNA, clone: QflA-17975, 5' e...    30   3.7    4
(DE189101) Bombyx mori genomic DNA, Fosmid clone:RO0346-O18_R.     36   4.1    2
(BX323500) Arabidopsis thaliana transposon insertion STS SM_...    46   4.1    1
(AC107759) Mus musculus chromosome 5, clone RP23-193N17, com...    46   4.1    1
(Z97341) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c...    46   4.1    1
(AP009678) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   4.1    1
(AP009648) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   4.1    1
(AL161544) Arabidopsis thaliana DNA chromosome 4, contig fra...    46   4.1    1
(AK230057) Arabidopsis thaliana mRNA for hypothetical protei...    46   4.1    1
(AC148242) Medicago truncatula clone mth2-18f6, complete seq...    46   4.1    1
(AC007505) Arabidopsis thaliana chromosome I BAC F28L22 geno...    46   4.1    1
(GC474436) Sequence 32 from patent US 7384750.                     46   4.1    1
(DD000783) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH...    46   4.1    1
(BD097390) Nucleic acid sequences characterized by their enh...    46   4.1    1
(BD083743) Nucleic acid sequence characterized in that expre...    46   4.1    1
(AX059468) Sequence 201 from Patent WO0055325.                     46   4.1    1
(AR777037) Sequence 192 from patent US 6972197.                    46   4.1    1
(AC113631) Rattus norvegicus clone CH230-245M22, *** SEQUENC...    46   4.1    1
(AC108342) Rattus norvegicus clone CH230-295E7, *** SEQUENCI...    46   4.1    1
(AC099349) Rattus norvegicus clone CH230-4G5, *** SEQUENCING...    46   4.1    1
(AC094500) Rattus norvegicus clone CH230-4E5, *** SEQUENCING...    46   4.1    1
(AC232518) Brassica rapa subsp. pekinensis clone KBrB071A06,...    46   4.1    1
(AC218483) Bos taurus clone CH240-313P3, WORKING DRAFT SEQUE...    46   4.1    1
(AC215637) Zea mays chromosome 10 clone CH201-184N18; ZMMBBc...    46   4.1    1
(AC163493) Mus musculus chromosome 5 clone RP23-416B2 map 5,...    46   4.1    1
(DQ213277) Taeniopygia guttata clone 0061P0016E02 mRNA seque...    46   4.1    1
(EJ864890) 1093018268805 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.1    1
(DX891978) KBrH020E02R KBrH, Brassica rapa HindIII BAC libra...    46   4.1    1
(DX891930) KBrH020D02R KBrH, Brassica rapa HindIII BAC libra...    46   4.1    1
(CW095635) 104_460_11001436_148_34323_002 Sorghum methylatio...    46   4.1    1
(CC138375) NDL.93H16.SP6 Notre Dame Liverpool Aedes aegypti ...    46   4.1    1
(BH675261) BOMNP46TR BO_2_3_KB Brassica oleracea genomic clo...    46   4.1    1
(CV231875) WS0195.B21_N06 PT-DX-N-A-10 Populus trichocarpa c...    46   4.1    1
(CJ481585) Macaca fascicularis mRNA, clone: QtrA-17283, 5' e...    46   4.1    1
(CJ436568) Macaca fascicularis mRNA, clone: QccE-13683, 5' e...    46   4.1    1
(CD314592) StrPu621.004956 Sea urchin unfertilised egg cDNA ...    46   4.1    1
(EC924329) WIN025.TB24.1_A19 Cab Sauv flower, leaf and root ...    36   4.1    3
(CU694831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.1    6
(CI276226) Oryza sativa Japonica Group cDNA, clone: 077-M159...    38   4.2    2
(AP010605) Lotus japonicus genomic DNA, chromosome 6, clone:...    38   4.3    5
(EJ639501) 1093010571067 Global-Ocean-Sampling_GS-29-01-01-1...    32   4.6    3
(AP009750) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   4.6    4
(AC113815) Rattus norvegicus  BAC CH230-221C20 (Children's H...    36   4.6    10
(DE148213) Bombyx mori genomic DNA, Fosmid clone:RO0287-P20_R.     38   4.7    2
(CJ459115) Macaca fascicularis mRNA, clone: QmoA-11244, 5' e...    36   4.9    2
(AX145508) Sequence 4230 from Patent WO0134809.                    32   4.9    4
(AR486144) Sequence 4230 from patent US 6703492.                   32   4.9    4
(AF270190) Staphylococcus epidermidis strain SR1 clone step....    32   4.9    4
(CJ457532) Macaca fascicularis mRNA, clone: QflA-23420, 5' e...    36   5.0    2
(CJ484912) Macaca fascicularis mRNA, clone: QtsA-12473, 5' e...    36   5.1    2
(EJ083637) 1095460072327 Global-Ocean-Sampling_GS-26-01-01-1...    40   5.1    2
(CJ448674) Macaca fascicularis mRNA, clone: QflA-14057, 5' e...    36   5.1    2
(CJ440102) Macaca fascicularis mRNA, clone: QccE-17402, 5' e...    42   5.1    2
(CJ445177) Macaca fascicularis mRNA, clone: QflA-10310, 5' e...    36   5.1    2
(EJ666972) 1092955044979 Global-Ocean-Sampling_GS-30-02-01-1...    36   5.1    2
(BJ409840) Dictyostelium discoideum cDNA clone:ddv10p03, 5' ...    38   5.2    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   5.2    19
(CJ449067) Macaca fascicularis mRNA, clone: QflA-14466, 5' e...    38   5.3    2
(CJ445172) Macaca fascicularis mRNA, clone: QflA-10305, 5' e...    36   5.3    2
(EJ580440) 1092960157870 Global-Ocean-Sampling_GS-29-01-01-1...    40   5.3    2
(EJ729307) 1092960032822 Global-Ocean-Sampling_GS-30-02-01-1...    36   5.6    2
(EJ817334) 1093017521756 Global-Ocean-Sampling_GS-30-02-01-1...    42   5.6    2
(AP004489) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   5.7    7
(EJ916423) 1093018562488 Global-Ocean-Sampling_GS-30-02-01-1...    42   5.8    2
(EJ727734) 1092959677167 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.1    2
(EJ097304) 1095462238771 Global-Ocean-Sampling_GS-26-01-01-1...    40   6.1    2
(AF007261) Reclinomonas americana mitochondrion, complete ge...    36   6.2    6
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   6.3    15
(CP000395) Borrelia afzelii PKo, complete genome.                  34   6.7    21
(AE017263) Mesoplasma florum L1 complete genome.                   32   7.0    20
(BJ363932) Dictyostelium discoideum cDNA clone:ddc29m04, 5' ...    32   7.0    3
(AC119760) Rattus norvegicus clone CH230-26J19, *** SEQUENCI...    34   7.3    2
(AC099361) Rattus norvegicus clone CH230-19N12, *** SEQUENCI...    34   7.3    2
(AC201406) Strongylocentrotus purpuratus clone R3-17L3, WORK...    34   7.6    7
(CR762395) Zebrafish DNA sequence from clone CH211-170P16 in...    32   7.6    2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   7.6    18
(BJ418258) Dictyostelium discoideum cDNA clone:ddv32m02, 5' ...    38   8.0    3
(BJ327603) Dictyostelium discoideum cDNA clone:dda21h01, 5' ...    34   8.0    3
(AC172317) Strongylocentrotus purpuratus clone R3-14F18, WOR...    34   8.1    7
(BJ326493) Dictyostelium discoideum cDNA clone:dda16n14, 5' ...    34   8.6    2
(AC217025) Pan troglodytes BAC clone CH251-730F11 from chrom...    32   8.7    12
(AC210650) Populus trichocarpa clone POP004-K01, complete se...    32   8.8    9
(AP003844) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.9    3
(AC234241) Tupaia belangeri BAC clone CH275-11H12 from chrom...    34   8.9    5
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    32   9.1    16
(CU915636) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.5    10
(ES557674) est_e_glacialis931 RightWhaleSkin Eubalaena glaci...    38   9.6    2
(AC148239) Medicago truncatula clone mth2-5d7, complete sequ...    36   9.7    6
(AC019340) Homo sapiens BAC clone RP11-715L17 from 7, comple...    40   9.8    5
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   9.9    14

>(BJ398296) Dictyostelium discoideum cDNA clone:dds11j20, 3' end,
            single read.
          Length = 707

 Score = 1291 bits (651), Expect(2) = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Minus


Query: 734  aaaacatgtttcgttaatggatgaattaaatagattaatttcattagataatttaatgga 793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  aaaacatgtttcgttaatggatgaattaaatagattaatttcattagataatttaatgga 639


Query: 794  ggtatcagaggtacaaccaagaattagcatgtaatcatgatcataacagtatttataatc 853
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  ggtatcagaggtacaacaaagaattagcatgtaatcatgatcataacagtatttataatc 579


Query: 854  atgttttagaaattgtaaatgattcaaaatatactgatagagataaattagtattagtac 913
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  atgttttagaaattgtaaatgattcaaaatatactgatagagataaattagtattagtac 519


Query: 914  ttttatatagtattagatatgaagatggtagagtttgggaattaaaagaaaaattatcaa 973
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  ttttatatagtattagatatgaagatggtagagtttgggaattaaaagaaaaattatcaa 459


Query: 974  gtattggtattcctccaaaagaaattggtttaattgatacattaagaggatatgcaggtg 1033
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  gtattggtattcctccaaaagaaattggtttaattgatacattaagaggatatgcaggtg 399


Query: 1034 caagtttaagagaaggtgatttattaggaactaaaaatattttttcatttgcaagaagtg 1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  caagtttaagagaaggtgatttattaggaactaaaaatattttttcatttgcaagaagtg 339


Query: 1094 ttgttaaacgtggtttacaaggtgtttcaaatatttatactcaacataaaccattattac 1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  ttgttaaacgtggtttacaaggtgtttcaaatatttatactcaacataaaccattattac 279


Query: 1154 atgatattttagatagtattttaaagaacaaattaaaagaaacctcttatccatacttat 1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  atgatattttagatagtattttaaagaacaaattaaaagaaacctcttatccatacttat 219


Query: 1214 caacaactcaatcaagagagagaccacaagatgtaattatatttatggttggtggtatca 1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218  caacaactcaatcaagagagagaccacaagatgtaattatatttatggttggtggtatca 159


Query: 1274 cttatgaagaggcattaaccgtttacacttttaattctttaaatactggtgtttgtcgtg 1333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158  cttatgaagaggcattaaccgtttacacttttaattctttaaatactggtgtttgtcgtg 99


Query: 1334 ttgtattaggtggtacttcaattttaaatcgtgaacaatttttagaagatttatcaag 1391
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 98   ttgtattaggtggtacttcaattttaaatcgtnaacaatttttagaagatttatcaag 41

 Score = 34.2 bits (17), Expect(2) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 1405 aatccttctagtagtag 1421
            |||||||||||||||||
Sbjct: 29   aatccttctagtagtag 13

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,908,820,258
Number of extensions: 122425651
Number of successful extensions: 10805867
Number of sequences better than 10.0: 252
Length of query: 1550
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1526
Effective length of database: 99,340,224,878
Effective search space: 151593183163828
Effective search space used: 151593183163828
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.28
Homology vs Protein 
Query= Contig-U16517-1 (Contig-U16517-1Q) /CSM_Contig/Contig-U16517-1Q.Seq.d
         (1550 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote...   389   e-125
AK298786_1(AK298786|pid:none) Homo sapiens cDNA FLJ50613 complet...   151   3e-65
AK293555_1(AK293555|pid:none) Homo sapiens cDNA FLJ50448 complet...   156   2e-60
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...   182   9e-50
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va...   185   1e-49
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro...   183   1e-49
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote...   183   1e-49
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin...   182   3e-49
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet...   160   4e-49
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica...   156   6e-48
BC084162_1(BC084162|pid:none) Xenopus laevis hypothetical LOC495...   184   8e-48
BC121938_1(BC121938|pid:none) Xenopus tropicalis vacuolar protei...   185   4e-47
BT045798_1(BT045798|pid:none) Salmo salar clone ssal-rgf-531-252...   155   4e-47
AF036234_1(AF036234|pid:none) Arabidopsis thaliana vacuolar prot...   178   2e-44
(O49048) RecName: Full=Vacuolar protein sorting-associated prote...   178   5e-44
EF147116_1(EF147116|pid:none) Populus trichocarpa clone WS01227_...   178   4e-43
(Q09805) RecName: Full=Putative vacuolar protein sorting-associa...   162   1e-41
AP004136_8(AP004136|pid:none) Oryza sativa Japonica Group genomi...   172   2e-41
EU975235_1(EU975235|pid:none) Zea mays clone 485233 vacuolar pro...   169   8e-41
BT065239_1(BT065239|pid:none) Zea mays full-length cDNA clone ZM...   168   6e-40
AE017342_128(AE017342|pid:none) Cryptococcus neoformans var. neo...   137   1e-39
CR954204_86(CR954204|pid:none) Ostreococcus tauri strain OTTH059...   133   5e-37
FN318911_1(FN318911|pid:none) Schistosoma japonicum isolate Anhu...   158   6e-37
FN314443_1(FN314443|pid:none) Schistosoma japonicum isolate Anhu...   158   6e-37
AB074884_1(AB074884|pid:none) Aspergillus nidulans gene for VpsB...   150   1e-36
AM270330_28(AM270330|pid:none) Aspergillus niger contig An15c003...   154   1e-36
AE014297_995(AE014297|pid:none) Drosophila melanogaster chromoso...   154   1e-35
AK301994_1(AK301994|pid:none) Homo sapiens cDNA FLJ52026 complet...   149   3e-34
AB261098_1(AB261098|pid:none) Entamoeba histolytica gene for EhV...   147   8e-34
CU633900_286(CU633900|pid:none) Podospora anserina genomic DNA c...   146   2e-33
T29567(T29567) hypothetical protein C44C1.4 - Caenorhabditis ele...   140   5e-33
CP001141_74(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10...   124   7e-33
CR382131_1201(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   144   9e-33
CP001574_506(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   109   2e-31
CR380954_120(CR380954|pid:none) Candida glabrata strain CBS138 c...   134   1e-29
CU928179_138(CU928179|pid:none) Zygosaccharomyces rouxii strain ...   131   8e-29
CR382133_201(CR382133|pid:none) Debaryomyces hansenii strain CBS...   130   1e-28
CR382125_816(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   129   4e-28
AM910986_37(AM910986|pid:none) Plasmodium knowlesi strain H chro...   107   9e-25
AE001362_154(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...   113   1e-24
AB261099_1(AB261099|pid:none) Entamoeba histolytica gene for EhV...   116   2e-24
FN392319_453(FN392319|pid:none) Pichia pastoris GS115 chromosome...   109   3e-22
CT005272_231(CT005272|pid:none) Leishmania major strain Friedlin...   107   1e-21
AM502254_479(AM502254|pid:none) Leishmania infantum chromosome 36.    107   2e-21
AY811548_1(AY811548|pid:none) Schistosoma japonicum SJCHGC04339 ...    86   3e-15
CU928175_172(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    86   4e-15
Z46727_23(Z46727|pid:none) S.cerevisiae chromosome IV cosmid 9395.     84   2e-14
(P22213) RecName: Full=Protein SLY1; AltName: Full=Suppressor of...    84   2e-14
A39610(A39610;S49785;S52697;A54804;S13359;S14227)SLY1 protein - ...    84   2e-14
AL590446_147(AL590446|pid:none) chromosome VI of strain GB-M1 of...    84   2e-14
CR382139_561(CR382139|pid:none) Debaryomyces hansenii strain CBS...    83   2e-14
CT005272_47(CT005272|pid:none) Leishmania major strain Friedlin,...    81   9e-14
AM494972_55(AM494972|pid:none) Leishmania braziliensis chromosom...    81   1e-13
(Q54IJ1) RecName: Full=Sec1 family domain-containing protein 1 h...    80   2e-13
CR382124_754(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    78   8e-13
AM502254_220(AM502254|pid:none) Leishmania infantum chromosome 36.     78   1e-12
AE016820_251(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    76   3e-12
CR954202_381(CR954202|pid:none) Ostreococcus tauri strain OTTH05...    74   1e-11
(O74534) RecName: Full=Protein sly1;  &AL031543_3(AL031543|pid:n...    73   3e-11
FN357616_21(FN357616|pid:none) Schistosoma mansoni genome sequen...    67   1e-09
AL592306_2(AL592306|pid:none) Zebrafish DNA sequence from clone ...    67   1e-09
(Q54QC8) RecName: Full=Protein transport protein sec1;                 67   2e-09
(Q9SL48) RecName: Full=SEC1 family transport protein SLY1;      ...    67   2e-09
BT072588_1(BT072588|pid:none) Salmo salar clone ssal-rgf-531-255...    66   3e-09
CR940353_221(CR940353|pid:none) Theileria annulata strain Ankara...    66   3e-09
AM459952_2(AM459952|pid:none) Vitis vinifera contig VV78X173950....    66   4e-09
BC080023_1(BC080023|pid:none) Xenopus laevis hypothetical protei...    66   4e-09
BC121967_1(BC121967|pid:none) Xenopus tropicalis syntaxin bindin...    65   5e-09
(Q62753) RecName: Full=Syntaxin-binding protein 2; AltName: Full...    65   9e-09
(Q9SZ77) RecName: Full=Protein transport Sec1b;          Short=A...    65   9e-09
BC073717_1(BC073717|pid:none) Xenopus laevis MGC83661 protein, m...    65   9e-09
JC4674(JC4674) Sly1 protein - rat  &U35364_1(U35364|pid:none)          65   9e-09
(Q62991) RecName: Full=Sec1 family domain-containing protein 1; ...    65   9e-09
BC003477_1(BC003477|pid:none) Mus musculus syntaxin binding prot...    64   1e-08
AM910988_191(AM910988|pid:none) Plasmodium knowlesi strain H chr...    64   1e-08
BC167919_1(BC167919|pid:none) Xenopus tropicalis cDNA clone MGC:...    64   1e-08
(Q64324) RecName: Full=Syntaxin-binding protein 2; AltName: Full...    64   1e-08
BC097221_1(BC097221|pid:none) Danio rerio zgc:114171, mRNA (cDNA...    64   2e-08
AK041028_1(AK041028|pid:none) Mus musculus adult male aorta and ...    64   2e-08
(Q28288) RecName: Full=Syntaxin-binding protein 2; AltName: Full...    64   2e-08
AK014070_1(AK014070|pid:none) Mus musculus 13 days embryo head c...    64   2e-08
(Q8BRF7) RecName: Full=Sec1 family domain-containing protein 1; ...    64   2e-08
AF319958_1(AF319958|pid:none) Homo sapiens vesicle transport-rel...    64   2e-08
AK222820_1(AK222820|pid:none) Homo sapiens mRNA for vesicle tran...    64   2e-08
CR855912_1(CR855912|pid:none) Paramecium tetraurelia macronuclea...    64   2e-08
AB020724_1(AB020724|pid:none) Homo sapiens mRNA for KIAA0917 pro...    64   2e-08
(Q6R748) RecName: Full=Syntaxin-binding protein 1; AltName: Full...    64   2e-08
AK290410_1(AK290410|pid:none) Homo sapiens cDNA FLJ75633 complet...    63   3e-08
CR855979_1(CR855979|pid:none) Paramecium tetraurelia macronuclea...    63   3e-08
D45903_1(D45903|pid:none) Mus musculus mRNA for unc-18 homologue...    63   3e-08
(O08599) RecName: Full=Syntaxin-binding protein 1; AltName: Full...    62   4e-08
AF326545_1(AF326545|pid:none) Mus musculus DBA/2J syntaxin bindi...    62   4e-08
AF004563_1(AF004563|pid:none) Homo sapiens hUNC18b alternatively...    62   4e-08
L26088_1(L26088|pid:none) Cow Munc18-1 mRNA, complete cds.             62   4e-08
BC123520_1(BC123520|pid:none) Bos taurus syntaxin binding protei...    62   4e-08
AB168798_1(AB168798|pid:none) Macaca fascicularis testis cDNA, c...    62   6e-08
AL513411_3(AL513411|pid:none) Neurospora crassa DNA linkage grou...    62   6e-08
AF086916_1(AF086916|pid:none) Homo sapiens sly1p mRNA, complete ...    61   1e-07
AP008212_197(AP008212|pid:none) Oryza sativa (japonica cultivar-...    61   1e-07
AY650333_1(AY650333|pid:none) Macaca fascicularis syntaxin-bindi...    60   2e-07
CU640366_1328(CU640366|pid:none) Podospora anserina genomic DNA ...    60   2e-07
AF036706_7(AF036706|pid:none) Caenorhabditis elegans cosmid T07A...    60   2e-07
BC111245_1(BC111245|pid:none) Bos taurus syntaxin binding protei...    60   2e-07
BC075276_1(BC075276|pid:none) Xenopus tropicalis syntaxin bindin...    60   2e-07
S39345(S39345)unc-18 protein homolog, 67K - rat                        60   3e-07
BC171526_1(BC171526|pid:none) Danio rerio si:rp71-10d23.3, mRNA ...    59   4e-07
BC134211_1(BC134211|pid:none) Danio rerio novel protein similar ...    59   4e-07
(Q7XWP3) RecName: Full=Probable protein transport Sec1a;  &AL606...    59   6e-07
BT060575_1(BT060575|pid:none) Zea mays full-length cDNA clone ZM...    59   6e-07
AM920428_1526(AM920428|pid:none) Penicillium chrysogenum Wiscons...    58   8e-07
AB002559_1(AB002559|pid:none) Homo sapiens mRNA for hunc18b2, co...    58   8e-07
(Q15833) RecName: Full=Syntaxin-binding protein 2; AltName: Full...    58   8e-07
AK222967_1(AK222967|pid:none) Homo sapiens mRNA for syntaxin bin...    58   8e-07
AM270199_66(AM270199|pid:none) Aspergillus niger contig An09c010...    57   1e-06
CP000594_25(CP000594|pid:none) Ostreococcus lucimarinus CCE9901 ...    57   2e-06
EU952152_1(EU952152|pid:none) Zea mays clone 1213485 SNARE-inter...    56   4e-06
BT065458_1(BT065458|pid:none) Zea mays full-length cDNA clone ZM...    56   4e-06
AB261097_1(AB261097|pid:none) Entamoeba histolytica gene for EhS...    56   4e-06
CR855908_1(CR855908|pid:none) Paramecium tetraurelia macronuclea...    56   4e-06
AK302257_1(AK302257|pid:none) Homo sapiens cDNA FLJ53447 complet...    56   4e-06
CP001334_120(CP001334|pid:none) Micromonas sp. RCC299 chromosome...    56   4e-06
(O18637) RecName: Full=Protein sly1 homolog;  &U95037_1(U95037|p...    55   9e-06
AE014134_432(AE014134|pid:none) Drosophila melanogaster chromoso...    54   1e-05
AE014134_430(AE014134|pid:none) Drosophila melanogaster chromoso...    54   1e-05
AK301406_1(AK301406|pid:none) Homo sapiens cDNA FLJ57213 complet...    54   1e-05
AE014134_431(AE014134|pid:none) Drosophila melanogaster chromoso...    54   1e-05
AB179342_1(AB179342|pid:none) Macaca fascicularis testis cDNA cl...    54   2e-05
AC152498_21(AC152498|pid:none) Medicago truncatula clone mth2-38...    54   2e-05
AK297873_1(AK297873|pid:none) Homo sapiens cDNA FLJ61324 complet...    54   2e-05
AY540193_1(AY540193|pid:none) Lytechinus variegatus syntaxin bin...    54   2e-05
BT072219_1(BT072219|pid:none) Salmo salar clone ssal-rgf-517-121...    54   2e-05
(Q07327) RecName: Full=Protein ROP;  &AE014296_818(AE014296|pid:...    53   3e-05
BT062238_1(BT062238|pid:none) Zea mays full-length cDNA clone ZM...    53   3e-05
EU973282_1(EU973282|pid:none) Zea mays clone 396109 unknown mRNA.      53   3e-05
BT063051_1(BT063051|pid:none) Zea mays full-length cDNA clone ZM...    53   3e-05
(Q851W1) RecName: Full=SEC1 family transport protein SLY1;  &AC0...    53   3e-05
Z35640_7(Z35640|pid:none) Caenorhabditis elegans Cosmid F43D9, c...    53   4e-05
EU971385_1(EU971385|pid:none) Zea mays clone 363470 SNARE-intera...    52   5e-05
AY889736_1(AY889736|pid:none) Synthetic construct Homo sapiens c...    52   5e-05
FN357324_19(FN357324|pid:none) Schistosoma mansoni genome sequen...    51   1e-04
BC133423_1(BC133423|pid:none) Bos taurus syntaxin binding protei...    51   1e-04
AP007164_533(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    50   2e-04
AF484092_1(AF484092|pid:none) Lymnaea stagnalis neural-specific ...    50   2e-04
AK303701_1(AK303701|pid:none) Homo sapiens cDNA FLJ54775 complet...    50   2e-04
FN316944_1(FN316944|pid:none) Schistosoma japonicum isolate Anhu...    50   3e-04
AK152261_1(AK152261|pid:none) Mus musculus bone marrow macrophag...    50   3e-04
FN313966_1(FN313966|pid:none) Schistosoma japonicum isolate Anhu...    50   3e-04
CR382131_903(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    43   4e-04
AL845471_2(AL845471|pid:none) Mouse DNA sequence from clone RP23...    49   5e-04
AK293984_1(AK293984|pid:none) Homo sapiens cDNA FLJ55678 complet...    49   5e-04
AK223170_1(AK223170|pid:none) Homo sapiens mRNA for syntaxin bin...    49   5e-04
D63506_1(D63506|pid:none) Homo sapiens mRNA for unc-18homologue,...    49   5e-04
(O00186) RecName: Full=Syntaxin-binding protein 3; AltName: Full...    49   5e-04
AJ720755_1(AJ720755|pid:none) Gallus gallus mRNA for hypothetica...    49   5e-04
AB209180_1(AB209180|pid:none) Homo sapiens mRNA for Syntaxin bin...    49   5e-04
BC038099_1(BC038099|pid:none) Homo sapiens syntaxin binding prot...    49   5e-04
AK155133_1(AK155133|pid:none) Mus musculus NOD-derived CD11c +ve...    49   7e-04
BC094055_1(BC094055|pid:none) Mus musculus syntaxin binding prot...    49   7e-04
AL590443_87(AL590443|pid:none) chromosome III of strain GB-M1 of...    49   7e-04
(Q60770) RecName: Full=Syntaxin-binding protein 3; AltName: Full...    49   7e-04
CR855909_1(CR855909|pid:none) Paramecium tetraurelia macronuclea...    48   9e-04
DQ083989_1(DQ083989|pid:none) Mus musculus syntaxin-binding prot...    48   9e-04
AK169799_1(AK169799|pid:none) Mus musculus 2 days neonate thymus...    48   9e-04
FN392322_129(FN392322|pid:none) Pichia pastoris GS115 chromosome...    47   0.002
AL844505_135(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    47   0.002
BT022422_1(BT022422|pid:none) Drosophila melanogaster IP05647 fu...    47   0.002
BC058874_1(BC058874|pid:none) Danio rerio syntaxin binding prote...    47   0.002
CU638744_315(CU638744|pid:none) Podospora anserina genomic DNA c...    46   0.003
AK298622_1(AK298622|pid:none) Homo sapiens cDNA FLJ58209 complet...    46   0.004
AM494963_218(AM494963|pid:none) Leishmania braziliensis chromoso...    45   0.007
(O94590) RecName: Full=Protein transport protein sec1;  &AL03282...    44   0.012
CT005265_238(CT005265|pid:none) Leishmania major strain Friedlin...    42   0.062
AC152158_10(AC152158|pid:none) Medicago truncatula clone mth2-13...    42   0.062
AM502244_235(AM502244|pid:none) Leishmania infantum chromosome 26.     41   0.11
AC149473_1(AC149473|pid:none) Medicago truncatula clone mth2-119...    41   0.14
AY429591_1(AY429591|pid:none) Haemonchus contortus UNC-18 (unc-1...    40   0.23
CP000521_1004(CP000521|pid:none) Acinetobacter baumannii ATCC 17...    39   0.52
AP009180_111(AP009180|pid:none) Candidatus Carsonella ruddii PV ...    38   1.2
AM285309_46(AM285309|pid:none) Spiroplasma citri GII3-3X chromos...    38   1.2
CP001574_507(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    37   1.5
CR382137_745(CR382137|pid:none) Debaryomyces hansenii strain CBS...    37   2.0
CP000487_885(CP000487|pid:none) Campylobacter fetus subsp. fetus...    37   2.6
AM502244_224(AM502244|pid:none) Leishmania infantum chromosome 26.     37   2.6
AY330642_1(AY330642|pid:none) Helicobacter pylori strain Du52:2 ...    37   2.6
CP000812_255(CP000812|pid:none) Thermotoga lettingae TMO, comple...    36   3.4
GQ161099_1(GQ161099|pid:none) Helicobacter pylori NCTC 11639 Cag...    36   4.4
AB190950_1(AB190950|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
AB190953_1(AB190953|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
AB190942_1(AB190942|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
A71238(A71238) hypothetical protein PH0163 - Pyrococcus horikosh...    35   7.6
AB190951_1(AB190951|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
AB190946_1(AB190946|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
FM992691_436(FM992691|pid:none) Candida dubliniensis CD36 chromo...    35   7.6
AB190948_1(AB190948|pid:none) Helicobacter pylori cagA gene for ...    35   7.6
FJ458130_1(FJ458130|pid:none) Helicobacter pylori strain K70 cyt...    35   9.9
CP000127_37(CP000127|pid:none) Nitrosococcus oceani ATCC 19707, ...    35   9.9
AE017344_606(AE017344|pid:none) Cryptococcus neoformans var. neo...    35   9.9
AB190941_1(AB190941|pid:none) Helicobacter pylori cagA gene for ...    35   9.9
AE016877_2443(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    35   9.9
CP000139_520(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    35   9.9
AL844508_350(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.9

>(Q54GE3) RecName: Full=Vacuolar protein sorting-associated protein
            45;
          Length = 563

 Score =  385 bits (988), Expect(2) = e-125
 Identities = 195/207 (94%), Positives = 195/207 (94%)
 Frame = +1

Query: 811  QELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPP 990
            QELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPP
Sbjct: 357  QELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGIPP 416

Query: 991  KEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDS 1170
            KEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDS
Sbjct: 417  KEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDS 476

Query: 1171 ILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGT 1350
            ILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGT
Sbjct: 477  ILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGT 536

Query: 1351 SILNREQFLEDLXXXXXXXXXXXXGRR 1431
            SILNREQFLEDL            GRR
Sbjct: 537  SILNREQFLEDLSSTQISNPSSSSGRR 563

 Score = 88.6 bits (218), Expect(2) = e-125
 Identities = 50/82 (60%), Positives = 56/82 (68%)
 Frame = +3

Query: 576 FSSLLALKKKPVIRYSSNSDTTRYLAEKITEXXXXKKFIENYPNFQKFSTTVSKHVSLMD 755
           F  L A  K  V ++    +T     + I      KKFIENYPNFQKFSTTVSKHVSLMD
Sbjct: 283 FGDLGASIKDLVDQFQDKMNTN----QNIQTIDDMKKFIENYPNFQKFSTTVSKHVSLMD 338

Query: 756 ELNRLISLDNLMEVSEVQPRIS 821
           ELNRLISLDNLMEVSEVQ  ++
Sbjct: 339 ELNRLISLDNLMEVSEVQQELA 360

 Score =  389 bits (999), Expect = e-106
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = +3

Query: 78  MSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVYTQSEILQKEVFLFEKIE 257
           MSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVYTQSEILQKEVFLFEKIE
Sbjct: 1   MSGKQMDVIASIQEYINKILTNIQGMKVLVLDKETAGIVSMVYTQSEILQKEVFLFEKIE 60

Query: 258 NTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTNTISKVSLDEIAKADEQD 437
           NTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTNTISKVSLDEIAKADEQD
Sbjct: 61  NTKEKMLHMKGVYFIRPTQENIQSICDELKDPKFNKYHLFFTNTISKVSLDEIAKADEQD 120

Query: 438 VVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVVDGLFSSLLALKKKPVIR 617
           VVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVVDGLFSSLLALKKKPVIR
Sbjct: 121 VVSEIQEYFGDFFAVNPDTFTLNLPGMLTKKSPRWQGDVGRVVDGLFSSLLALKKKPVIR 180

Query: 618 YSSNSDTTRYLAEKITE 668
           YSSNSDTTRYLAEKITE
Sbjct: 181 YSSNSDTTRYLAEKITE 197

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,988,841,984
Number of extensions: 35978069
Number of successful extensions: 103585
Number of sequences better than 10.0: 201
Number of HSP's gapped: 103245
Number of HSP's successfully gapped: 345
Length of query: 516
Length of database: 1,061,185,681
Length adjustment: 133
Effective length of query: 383
Effective length of database: 626,482,097
Effective search space: 239942643151
Effective search space used: 239942643151
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U16517-1 is nuc
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 1
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 6
CH (FL, L) 8
CF (FL, S) 7
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0