Contig-U16495-1
Contig ID Contig-U16495-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16495-1 (Contig-U16495-1Q) /CSM_Contig/Contig-U16495-1Q.Seq.d
AAAAACTAACACACTGACATACCACATTCCCACAGACGATAAAATTATAT
ATATATAAAAAAATAATAATAATAATAAAAAAAGAGAAATAAGAAATAAA
AAAATAAAAAAACAATCTTTTTTTAAAAATAACAGTTAATAAAAATAATA
ATAATAATAATAATAAAATGACAAAAGTTTATTCATTAGGTATTAGAAGA
GAAGATAAGAATCGTTGGGAAAGAAGAGCACCATTAGCGCCATCCCATGT
TGAAGAATTAGTTAAAAAAGGTATTAAAGTTATTGTTCAACCATCAACTC
TTAGAAATTATCCAAATGTTTTATATGAGAAAGCAGGAGCAATCATTCAA
GAGGATTTAAAAGAGTGTGATGTAATTGTAGCAGTAAAAGAAGTACCAAG
TGAATATTTATACAATGATAAAACCTACATTTTCTTCTCACACACCATCA
AAGCTCAACCATACAATATGGCAATGTTGGATGAAATTAACAAAAAACGT
ATTCGTTTAATCGATTATGAACGTATCACTGATGATCAAAATAGAAGATT
AGTTCGTTTCGGTTCTTTTGCTGGTTATGCTGGTATGATTGATATGCTTC
ATGCATTAGGTGATCGTTTATTAGCAAAAGGTTTTTCAACACCATTCTTG
CATGTTGGTTATTCATATGTATATTCAAAACTTGAAAGTGCAATGGAAGC
AGTTAAAGCAATTGGTGAAGAGATTTCACAAGTTGGTTTACCAGATGACC
TTTTACCATTTACTTTTGCTTTTACTTCAGATGGTGCTGTATCACAAGGT
GCACTTAAAATCTTTAAATTATTACCACATAAAATGGTTACACCAGATGA
AATGGTTGAATTAGTTAAAAATAAGAAGGGAGAAAGAGGTATTTTATATG
GTACAATTATTACATCAGAACACATGGCAGCACCAATTGATCCAGAAAAG
AAATTTAATAAAGCTGAATATTATGCAGATCCAAGTAAATATAAACCAAT
CTTTTGTGAGAAATATGCACCATACATATCATGTATTATCAATTGTATGT
ATTGGGATGCCAAATATCCACGTTTAATCACAATTAGACAAATGGAAGAA
TTGGTTGAAACTAACAATAGTAGATTGATTGGTGTTGCTGATATCTCTGC
CGATGTAAATGGTTCATTGGAATTCTTAATGACAACCACTTCAATCGATT
CACCACTTTATATCTATGATCCAAGAACTCAAGAAGTTCATGATCCAACC
ACTGATCAACAATATATGTATCGTGATGGTATCTTATTTTTAGCAGTTGA
TAATTTACCAACTGAATTCCCAAAAGAAGCAACTCAATGGTTTGGTGATC
ATCTTTTAAAATTTATGGAACAAGTTGTTAAATCAGATCCAAAATTACCA
TATGAAAAAATGACAGATATTGCACCAGAAATGAAAAGAGCAATTATTAC
ATGTCATGGTTCATTAACACCACCATTTGAATATATTACTGAACTTAGAA
AGAAGAGAGAAGAATTAACAACTAGAATTTTAATTTTAGGAGCAGGTTCA
GTATCATATCCAACCATTTCTTATTTAGCAAGAAATCCAAGTCATAAATT
GACAGTTGGTGATGTTTCAATTGAACAATCAAAGAAGGCAGCATCCTATG
ATCCAGAATGTCAAACTGTAGTTATCGATGTTAATGATCAAGAGAAATTG
GATGAAATTGTAAAGAGACATAGAGTTGTTGTGAGTTTACTTCCAGATGA
ACTCACAATATTGGTAGCCAAATCATGTATTCGTCAAAAGAAACATATGG
TTTCACCAGGTTATATGAGTAGCGAGATGGAAGCACTCGATAAGGATGCC
AAAGAAGCTGGTATCACTCTCTTGAATGAAATGGGTTTGGATCCAGGTAT
CGATCATTTGGAAGCTTGCAGAGTCATTAACGATGCCACAAACAAGGGTG
GTAAAGTCAGAACTTTTGTCTCTTGGTGTGGTGGCTTACCTGCACCAGAA
TCATCCGATAATCCATTGGGCTATAAATTCACTTGGTCACCAAAAGAGAT
TATCTCTGGTGTTACCAATGATAGTAAATTCCGTCGTGATGGTCAAGATA
TCTACATTCCAGGTAGTGAGGTCTATAAAAGAGTTCAACCAGTCGATATC
TTCCCAGCATTGTCATTAGAAGGTGTACCAAATAGAGATTGTCTTCATCT
TACCAAGACCTATGGTATTGAGAGTGTAAATACTCTTTTCCGTGGTACCA
TCCGTTATAAAGGTTTCTGTCAAGTCATGGAAGCTGCCGTCGAAATTGGT
CTATTGGATACCACTAGCAAATCACATCTCGCCCCATCCGCCCCACCAAT
GTCATGGAATCTCGCAATGCGTCATATCTTACCAATTCCTCAAAGTGAAG
GTATTCCAACTCAAGAACTTTTAAGAAGAAAACTTAGAACTAGAAGAGGT
TATCCTTCAAAAGGCTATGACGATGATAAGATTACCTATATCCTTTACGT
CTTTGAGTGGTTAGATATCTTTAGTGAAAAGAATAATGTCGCTCAATGTG
GTAACTATTTCGAAGCTTTCACAGAGTTATTGAAAACTAAACTCAATCTC
TTACCATCAGAAAGAGATTTAATCATTTTACATAATGTCGTTGGTATCGA
ATGGGATGGTGGTAAACATGAAACTAAAACTTCAACACTCGTTTACTATG
GTTCAAAAGATCAATCTGCTGTTAGCACTGTAGTTGGTTTACCAGTTGCT
ATCGCAGCTGAATTATTGGTTGAAAATCAAATTAAAGAAGTTGGTGCAAT
TAGACCAATCACTAAAGAATTTTATAAACCAATGTTAAAATCACTTCATA
AGAAGGTATTTCTTTTATTCATAGAAGTGAATTTGATAAAATTTAAATTA
AAATTTTAATTTAAAAAAAAAAAAAAAAAATGTATCCTA

Gap no gap
Contig length 2939
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2461531
End point 2464470
Strand (PLUS/MINUS) PLUS
Number of clones 31
Number of EST 42
Link to clone list U16495
List of clone(s)

est1=SHK338F,-8,607
est2=SHD787F,-4,197
est3=VHI192F,7,198
est4=CHK492F,11,608
est5=SHJ222F,24,609
est6=AHL574F,25,623
est7=SHB859F,43,557
est8=VHE481F,169,797
est9=AHL713F,492,1125
est10=VHC756F,608,1183
est11=SLE222F,681,1320
est12=AFN810F,892,1511
est13=AFF111F,1354,2398
est14=VHB321Z,2103,2784
est15=VHK357Z,2109,2630
est16=AHA214Z,2111,2770
est17=AHJ394Z,2147,2505
est18=AHH124Z,2151,2757
est19=AHL713Z,2154,2849
est20=SHJ770Z,2159,2796
est21=VHE481Z,2160,2840
est22=AHK812Z,2161,2756
est23=SHK518Z,2168,2767
est24=SHC436Z,2195,2754
est25=SHD787Z,2195,2909
est26=VHI192Z,2196,2847
est27=VHC756Z,2197,2842
est28=VHN419Z,2197,2768
est29=AFN810Z,2198,2880
est30=AHL574Z,2200,2910
est31=VHM165Z,2200,2755
est32=SHC836Z,2242,2743
est33=CHK492Z,2306,2905
est34=CHN129Z,2309,2767
est35=SHB771Z,2310,2758
est36=SHB859Z,2312,2795
est37=SLE222Z,2312,2939
est38=SHH487Z,2334,2754
est39=SSI444E,2425,2916
est40=AFF111Z,2438,2745
est41=SLJ191Z,2661,2917
est42=AHL116Z,2683,2784
Translated Amino Acid sequence
klth*httfpqtiklyiykkiiiiikkek*eikk*KNNLFLKITVNKNNNNNNNKMTKVY
SLGIRREDKNRWERRAPLAPSHVEELVKKGIKVIVQPSTLRNYPNVLYEKAGAIIQEDLK
ECDVIVAVKEVPSEYLYNDKTYIFFSHTIKAQPYNMAMLDEINKKRIRLIDYERITDDQN
RRLVRFGSFAGYAGMIDMLHALGDRLLAKGFSTPFLHVGYSYVYSKLESAMEAVKAIGEE
ISQVGLPDDLLPFTFAFTSDGAVSQGALKIFKLLPHKMVTPDEMVELVKNKKGERGILYG
TIITSEHMAAPIDPEKKFNKAEYYADPSKYKPIFCEKYAPYISCIINCMYWDAKYPRLIT
IRQMEELVETNNSRLIGVADISADVNGSLEFLMTTTSIDSPLYIYDPRTQEVHDPTTDQQ
YMYRDGILFLAVDNLPTEFPKEATQWFGDHLLKFMEQVVKSDPKLPYEKMTDIAPEMKRA
IITCHGSLTPPFEYITELRKKREELTTRILILGAGSVSYPTISYLARNPSHKLTVGDVSI
EQSKKAASYDPECQTVVIDVNDQEKLDEIVKRHRVVVSLLPDELTILVAKSCIRQKKHMV
SPGYMSSEMEALDKDAKEAGITLLNEMGLDPGIDHLEACRVINDATNKGGKVRTFVSWCG
GLPAPESSDNPLGYKFTWSPKEIISGVTNDSKFRRDGQDIYIPGSEVYKRVQPVDIFPAL
SLEGVPNRDCLHLTKTYGIESVNTLFRGTIRYKGFCQVMEAAVEIGLLDTTSKSHLAPSA
PPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSKGYDDDKITYILYVFEWLDIF
SEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVVGIEWDGGKHETKTSTLVYYG
SKDQSAVSTVVGLPVAIAAELLVENQIKEVGAIRPITKEFYKPMLKSLHKKVFLLFIEVN
LIKFKLKF*fkkkkkkcil


Translated Amino Acid sequence (All Frames)
Frame A:
kn*htdiphshrr*nyiyikk*****kkrnkk*knkktiff*k*qlikiiiiiiik*qkf
ih*vleekirivgkeehh*rhpmlkn*lkkvlkllfnhqlleiiqmfymrkqeqsfkri*
ksvm*l*q*kkyqvniytmikptfsshtpsklnhtiwqcwmkltknvfv*simnvslmik
ied*fvsvlllvmlv*licfmh*vivy*qkvfqhhscmlvihmyiqnlkvqwkqlkqlvk
rfhklvyqmtfyhllllllqmvlyhkvhlkslnyyhikwlhqmkwln*lkirrekevfym
vqllhqntwqhqliqkrnliklnimqiqvninqsfvrnmhhtyhvlsivcigmpnihv*s
qldkwknwlkltivd*lvllislpm*mvhwns**qplqsihhfismiqelkkfmiqplin
nicivmvsyf*qliiyqlnsqkkqlnglviif*nlwnkllnqiqnyhmkk*qilhqk*ke
qllhvmvh*hhhlnillnlerrekn*qlef*f*eqvqyhiqpfli*qeiqvin*qlvmfq
lnnqrrqhpmiqnvkl*lsmlmikrnwmkl*rdiell*vyfqmnsqyw*pnhvfvkrniw
fhqvi*varwkhsirmpkklvsls*mkwvwiqvsiiwklaesltmpqtrvvksellslgv
vaylhqnhpiihwainslghqkrlslvlpmivnsvvmvkistfqvvrsikefnqsissqh
ch*kvyqieivfilprpmvlrv*ilfsvvpsvikvsvkswklpsklvywiplanhisphp
phqchgisqcvisyqflkvkvfqlknf*eenleleevilqkamtmirlpisftslsg*is
lvkrimslnvvtisklsqsy*klnsisyhqkei*sfyimslvsngmvvnmklklqhsftm
vqkinlllal*lvyqllsqlnywlkiklkklvqldqslknfinqc*nhfirryffys*k*
i**nln*nfnlkkkkknvs


Frame B:
ktntltyhiptddkiiyi*knnnnnkkreirnkkikkqsffknns**k*******ndksl
firy*krr*eslgkkstisaipc*ris*kry*sycstins*klskcfi*esrsnhsrgfk
rv*cncsskrstk*ifiq**nlhfllthhqsstiqygnvg*n*qktysfnrl*tyh**sk
*kissfrffcwlcwyd*yascir*sfiskrffntilacwlficifkt*kcngss*snw*r
dftswftr*pftiyfcfyfrwccitrct*nl*iitt*ngytr*ng*is*k*egrkryfiw
ynyyirthgstn*srkei**s*ilcrsk*i*tnll*eictihimyyqlyvlgcqistfnh
n*tngrig*n*q**idwcc*ylcrckwfigilndnhfnrfttlyl*sknsrss*snh*st
iyvs*wylifss**ftn*ipkrsnsmvw*ssfkiygtsc*irskiti*kndryctrneks
nyymswfintti*iyy*t*keerrinn*nfnfrsrfsiisnhflfskksks*idsw*cfn
*tikegsil*srmsncsyrc**sreig*ncket*scceftsr*thnigsqimyssketyg
ftrlye*rdgstr*gcqrswyhsle*ngfgsryrsfgslqsh*rchkqgw*sqnfcllvw
wltctriir*sigl*ihlvtkrdylwcyq***ips*wsrylhsr**gl*ksstsrylpsi
virrctk*rlsssyqdlwy*eckysfpwyhpl*rflsshgscrrnwsigyh*qitsrpir
ptnvmesrnasyltnssk*rysnsrtfkkkt*n*krlsfkrl*r**dylyplrl*vvryl
**ke*crsmw*lfrsfhrvien*tqsltirkrfnhft*crwyrmgww*t*n*nfntrllw
fkrsicc*hcswftscyrs*iig*ksn*rswcn*tnh*ril*tnvkits*egisfihrse
fdki*ikili*kkkkkmyp


Frame C:
klth*httfpqtiklyiykkiiiiikkek*eikk*KNNLFLKITVNKNNNNNNNKMTKVY
SLGIRREDKNRWERRAPLAPSHVEELVKKGIKVIVQPSTLRNYPNVLYEKAGAIIQEDLK
ECDVIVAVKEVPSEYLYNDKTYIFFSHTIKAQPYNMAMLDEINKKRIRLIDYERITDDQN
RRLVRFGSFAGYAGMIDMLHALGDRLLAKGFSTPFLHVGYSYVYSKLESAMEAVKAIGEE
ISQVGLPDDLLPFTFAFTSDGAVSQGALKIFKLLPHKMVTPDEMVELVKNKKGERGILYG
TIITSEHMAAPIDPEKKFNKAEYYADPSKYKPIFCEKYAPYISCIINCMYWDAKYPRLIT
IRQMEELVETNNSRLIGVADISADVNGSLEFLMTTTSIDSPLYIYDPRTQEVHDPTTDQQ
YMYRDGILFLAVDNLPTEFPKEATQWFGDHLLKFMEQVVKSDPKLPYEKMTDIAPEMKRA
IITCHGSLTPPFEYITELRKKREELTTRILILGAGSVSYPTISYLARNPSHKLTVGDVSI
EQSKKAASYDPECQTVVIDVNDQEKLDEIVKRHRVVVSLLPDELTILVAKSCIRQKKHMV
SPGYMSSEMEALDKDAKEAGITLLNEMGLDPGIDHLEACRVINDATNKGGKVRTFVSWCG
GLPAPESSDNPLGYKFTWSPKEIISGVTNDSKFRRDGQDIYIPGSEVYKRVQPVDIFPAL
SLEGVPNRDCLHLTKTYGIESVNTLFRGTIRYKGFCQVMEAAVEIGLLDTTSKSHLAPSA
PPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSKGYDDDKITYILYVFEWLDIF
SEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVVGIEWDGGKHETKTSTLVYYG
SKDQSAVSTVVGLPVAIAAELLVENQIKEVGAIRPITKEFYKPMLKSLHKKVFLLFIEVN
LIKFKLKF*fkkkkkkcil


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16495-1 (Contig-U16495-1Q)
/CSM_Contig/Contig-U16495-1Q.Seq.d
(2939 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16495-1 (Contig-U16495-1Q) /CSM_Contig/Conti... 5438 0.0
Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Conti... 40 0.019
Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U12262-1 (Contig-U12262-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U11363-1 (Contig-U11363-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U10820-1 (Contig-U10820-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U09485-1 (Contig-U09485-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U09225-1 (Contig-U09225-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U05646-1 (Contig-U05646-1Q) /CSM_Contig/Conti... 38 0.076
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti... 38 0.076

>Contig-U16495-1 (Contig-U16495-1Q) /CSM_Contig/Contig-U16495-1Q.Seq.d
Length = 2939

Score = 5438 bits (2743), Expect = 0.0
Identities = 2743/2743 (100%)
Strand = Plus / Plus


Query: 170 gacaaaagtttattcattaggtattagaagagaagataagaatcgttgggaaagaagagc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gacaaaagtttattcattaggtattagaagagaagataagaatcgttgggaaagaagagc 229


Query: 230 accattagcgccatcccatgttgaagaattagttaaaaaaggtattaaagttattgttca 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 accattagcgccatcccatgttgaagaattagttaaaaaaggtattaaagttattgttca 289


Query: 290 accatcaactcttagaaattatccaaatgttttatatgagaaagcaggagcaatcattca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 accatcaactcttagaaattatccaaatgttttatatgagaaagcaggagcaatcattca 349


Query: 350 agaggatttaaaagagtgtgatgtaattgtagcagtaaaagaagtaccaagtgaatattt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agaggatttaaaagagtgtgatgtaattgtagcagtaaaagaagtaccaagtgaatattt 409


Query: 410 atacaatgataaaacctacattttcttctcacacaccatcaaagctcaaccatacaatat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atacaatgataaaacctacattttcttctcacacaccatcaaagctcaaccatacaatat 469


Query: 470 ggcaatgttggatgaaattaacaaaaaacgtattcgtttaatcgattatgaacgtatcac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggcaatgttggatgaaattaacaaaaaacgtattcgtttaatcgattatgaacgtatcac 529


Query: 530 tgatgatcaaaatagaagattagttcgtttcggttcttttgctggttatgctggtatgat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgatgatcaaaatagaagattagttcgtttcggttcttttgctggttatgctggtatgat 589


Query: 590 tgatatgcttcatgcattaggtgatcgtttattagcaaaaggtttttcaacaccattctt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tgatatgcttcatgcattaggtgatcgtttattagcaaaaggtttttcaacaccattctt 649


Query: 650 gcatgttggttattcatatgtatattcaaaacttgaaagtgcaatggaagcagttaaagc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gcatgttggttattcatatgtatattcaaaacttgaaagtgcaatggaagcagttaaagc 709


Query: 710 aattggtgaagagatttcacaagttggtttaccagatgaccttttaccatttacttttgc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aattggtgaagagatttcacaagttggtttaccagatgaccttttaccatttacttttgc 769


Query: 770 ttttacttcagatggtgctgtatcacaaggtgcacttaaaatctttaaattattaccaca 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttttacttcagatggtgctgtatcacaaggtgcacttaaaatctttaaattattaccaca 829


Query: 830 taaaatggttacaccagatgaaatggttgaattagttaaaaataagaagggagaaagagg 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 taaaatggttacaccagatgaaatggttgaattagttaaaaataagaagggagaaagagg 889


Query: 890 tattttatatggtacaattattacatcagaacacatggcagcaccaattgatccagaaaa 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tattttatatggtacaattattacatcagaacacatggcagcaccaattgatccagaaaa 949


Query: 950 gaaatttaataaagctgaatattatgcagatccaagtaaatataaaccaatcttttgtga 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gaaatttaataaagctgaatattatgcagatccaagtaaatataaaccaatcttttgtga 1009


Query: 1010 gaaatatgcaccatacatatcatgtattatcaattgtatgtattgggatgccaaatatcc 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gaaatatgcaccatacatatcatgtattatcaattgtatgtattgggatgccaaatatcc 1069


Query: 1070 acgtttaatcacaattagacaaatggaagaattggttgaaactaacaatagtagattgat 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 acgtttaatcacaattagacaaatggaagaattggttgaaactaacaatagtagattgat 1129


Query: 1130 tggtgttgctgatatctctgccgatgtaaatggttcattggaattcttaatgacaaccac 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 tggtgttgctgatatctctgccgatgtaaatggttcattggaattcttaatgacaaccac 1189


Query: 1190 ttcaatcgattcaccactttatatctatgatccaagaactcaagaagttcatgatccaac 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 ttcaatcgattcaccactttatatctatgatccaagaactcaagaagttcatgatccaac 1249


Query: 1250 cactgatcaacaatatatgtatcgtgatggtatcttatttttagcagttgataatttacc 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 cactgatcaacaatatatgtatcgtgatggtatcttatttttagcagttgataatttacc 1309


Query: 1310 aactgaattcccaaaagaagcaactcaatggtttggtgatcatcttttaaaatttatgga 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 aactgaattcccaaaagaagcaactcaatggtttggtgatcatcttttaaaatttatgga 1369


Query: 1370 acaagttgttaaatcagatccaaaattaccatatgaaaaaatgacagatattgcaccaga 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 acaagttgttaaatcagatccaaaattaccatatgaaaaaatgacagatattgcaccaga 1429


Query: 1430 aatgaaaagagcaattattacatgtcatggttcattaacaccaccatttgaatatattac 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 aatgaaaagagcaattattacatgtcatggttcattaacaccaccatttgaatatattac 1489


Query: 1490 tgaacttagaaagaagagagaagaattaacaactagaattttaattttaggagcaggttc 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tgaacttagaaagaagagagaagaattaacaactagaattttaattttaggagcaggttc 1549


Query: 1550 agtatcatatccaaccatttcttatttagcaagaaatccaagtcataaattgacagttgg 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 agtatcatatccaaccatttcttatttagcaagaaatccaagtcataaattgacagttgg 1609


Query: 1610 tgatgtttcaattgaacaatcaaagaaggcagcatcctatgatccagaatgtcaaactgt 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 tgatgtttcaattgaacaatcaaagaaggcagcatcctatgatccagaatgtcaaactgt 1669


Query: 1670 agttatcgatgttaatgatcaagagaaattggatgaaattgtaaagagacatagagttgt 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 agttatcgatgttaatgatcaagagaaattggatgaaattgtaaagagacatagagttgt 1729


Query: 1730 tgtgagtttacttccagatgaactcacaatattggtagccaaatcatgtattcgtcaaaa 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1730 tgtgagtttacttccagatgaactcacaatattggtagccaaatcatgtattcgtcaaaa 1789


Query: 1790 gaaacatatggtttcaccaggttatatgagtagcgagatggaagcactcgataaggatgc 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1790 gaaacatatggtttcaccaggttatatgagtagcgagatggaagcactcgataaggatgc 1849


Query: 1850 caaagaagctggtatcactctcttgaatgaaatgggtttggatccaggtatcgatcattt 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 caaagaagctggtatcactctcttgaatgaaatgggtttggatccaggtatcgatcattt 1909


Query: 1910 ggaagcttgcagagtcattaacgatgccacaaacaagggtggtaaagtcagaacttttgt 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 ggaagcttgcagagtcattaacgatgccacaaacaagggtggtaaagtcagaacttttgt 1969


Query: 1970 ctcttggtgtggtggcttacctgcaccagaatcatccgataatccattgggctataaatt 2029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 ctcttggtgtggtggcttacctgcaccagaatcatccgataatccattgggctataaatt 2029


Query: 2030 cacttggtcaccaaaagagattatctctggtgttaccaatgatagtaaattccgtcgtga 2089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 cacttggtcaccaaaagagattatctctggtgttaccaatgatagtaaattccgtcgtga 2089


Query: 2090 tggtcaagatatctacattccaggtagtgaggtctataaaagagttcaaccagtcgatat 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 tggtcaagatatctacattccaggtagtgaggtctataaaagagttcaaccagtcgatat 2149


Query: 2150 cttcccagcattgtcattagaaggtgtaccaaatagagattgtcttcatcttaccaagac 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 cttcccagcattgtcattagaaggtgtaccaaatagagattgtcttcatcttaccaagac 2209


Query: 2210 ctatggtattgagagtgtaaatactcttttccgtggtaccatccgttataaaggtttctg 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2210 ctatggtattgagagtgtaaatactcttttccgtggtaccatccgttataaaggtttctg 2269


Query: 2270 tcaagtcatggaagctgccgtcgaaattggtctattggataccactagcaaatcacatct 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2270 tcaagtcatggaagctgccgtcgaaattggtctattggataccactagcaaatcacatct 2329


Query: 2330 cgccccatccgccccaccaatgtcatggaatctcgcaatgcgtcatatcttaccaattcc 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 cgccccatccgccccaccaatgtcatggaatctcgcaatgcgtcatatcttaccaattcc 2389


Query: 2390 tcaaagtgaaggtattccaactcaagaacttttaagaagaaaacttagaactagaagagg 2449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2390 tcaaagtgaaggtattccaactcaagaacttttaagaagaaaacttagaactagaagagg 2449


Query: 2450 ttatccttcaaaaggctatgacgatgataagattacctatatcctttacgtctttgagtg 2509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2450 ttatccttcaaaaggctatgacgatgataagattacctatatcctttacgtctttgagtg 2509


Query: 2510 gttagatatctttagtgaaaagaataatgtcgctcaatgtggtaactatttcgaagcttt 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 gttagatatctttagtgaaaagaataatgtcgctcaatgtggtaactatttcgaagcttt 2569


Query: 2570 cacagagttattgaaaactaaactcaatctcttaccatcagaaagagatttaatcatttt 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 cacagagttattgaaaactaaactcaatctcttaccatcagaaagagatttaatcatttt 2629


Query: 2630 acataatgtcgttggtatcgaatgggatggtggtaaacatgaaactaaaacttcaacact 2689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 acataatgtcgttggtatcgaatgggatggtggtaaacatgaaactaaaacttcaacact 2689


Query: 2690 cgtttactatggttcaaaagatcaatctgctgttagcactgtagttggtttaccagttgc 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 cgtttactatggttcaaaagatcaatctgctgttagcactgtagttggtttaccagttgc 2749


Query: 2750 tatcgcagctgaattattggttgaaaatcaaattaaagaagttggtgcaattagaccaat 2809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 tatcgcagctgaattattggttgaaaatcaaattaaagaagttggtgcaattagaccaat 2809


Query: 2810 cactaaagaattttataaaccaatgttaaaatcacttcataagaaggtatttcttttatt 2869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2810 cactaaagaattttataaaccaatgttaaaatcacttcataagaaggtatttcttttatt 2869


Query: 2870 catagaagtgaatttgataaaatttaaattaaaattttaattt 2912
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2870 catagaagtgaatttgataaaatttaaattaaaattttaattt 2912


Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 1 aaaaactaacacactgacataccacattcccacagacg 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaactaacacactgacataccacattcccacagacg 38


Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 2892 tttaaattaaaattttaattt 2912
|||||||||||||||||||||
Sbjct: 2915 tttaaattaaaattttaattt 2895


>Contig-U12482-1 (Contig-U12482-1Q) /CSM_Contig/Contig-U12482-1Q.Seq.d
Length = 1610

Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 2770 ttgaaaatcaaattaaagaa 2789
||||||||||||||||||||
Sbjct: 1330 ttgaaaatcaaattaaagaa 1349


>Contig-U13658-1 (Contig-U13658-1Q) /CSM_Contig/Contig-U13658-1Q.Seq.d
Length = 561

Score = 38.2 bits (19), Expect = 0.076
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 855 gttgaattagttaaaaata 873
|||||||||||||||||||
Sbjct: 264 gttgaattagttaaaaata 282


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,882
Number of Sequences: 8402
Number of extensions: 43882
Number of successful extensions: 4813
Number of sequences better than 10.0: 181
length of query: 2939
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2922
effective length of database: 7,932,708
effective search space: 23179372776
effective search space used: 23179372776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 4. 9
Homology vs DNA
Query= Contig-U16495-1 (Contig-U16495-1Q) /CSM_Contig/Contig-U16495-1Q.Seq.d
(2939 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ354589) Dictyostelium discoideum cDNA clone:dda54j03, 3' ... 1366 0.0 1
(BJ405510) Dictyostelium discoideum cDNA clone:dds31n21, 3' ... 1354 0.0 1
(BJ439208) Dictyostelium discoideum cDNA clone:ddv39b22, 3' ... 1344 0.0 1
(BJ354790) Dictyostelium discoideum cDNA clone:dda54c19, 3' ... 1338 0.0 1
(BJ437078) Dictyostelium discoideum cDNA clone:ddv33j05, 3' ... 1332 0.0 1
(BJ345545) Dictyostelium discoideum cDNA clone:dda28d04, 3' ... 1326 0.0 2
(BJ347776) Dictyostelium discoideum cDNA clone:dda31k04, 3' ... 1296 0.0 1
(BJ441774) Dictyostelium discoideum cDNA clone:ddv47g23, 3' ... 1287 0.0 1
(BJ409754) Dictyostelium discoideum cDNA clone:dds42k06, 3' ... 1287 0.0 2
(AU061428) Dictyostelium discoideum slug cDNA, clone SLE222. 1269 0.0 1
(BJ438211) Dictyostelium discoideum cDNA clone:ddv36p13, 3' ... 1269 0.0 1
(BJ336497) Dictyostelium discoideum cDNA clone:dda54j03, 5' ... 1257 0.0 1
(BJ420581) Dictyostelium discoideum cDNA clone:ddv39b22, 5' ... 1237 0.0 1
(BJ328396) Dictyostelium discoideum cDNA clone:dda28d04, 5' ... 1229 0.0 1
(BJ351971) Dictyostelium discoideum cDNA clone:dda45o05, 3' ... 1201 0.0 1
(BJ408195) Dictyostelium discoideum cDNA clone:dds45c05, 3' ... 1189 0.0 1
(BJ353973) Dictyostelium discoideum cDNA clone:dda52h04, 3' ... 1179 0.0 1
(BJ323530) Dictyostelium discoideum cDNA clone:dda11e03, 5' ... 1160 0.0 1
(BJ419635) Dictyostelium discoideum cDNA clone:ddv36p13, 5' ... 1142 0.0 1
(BJ381842) Dictyostelium discoideum cDNA clone:ddc42h24, 3' ... 1134 0.0 1
(BJ444656) Dictyostelium discoideum cDNA clone:ddv57f06, 3' ... 1124 0.0 1
(BJ404377) Dictyostelium discoideum cDNA clone:dds28h10, 3' ... 1110 0.0 1
(AU034710) Dictyostelium discoideum slug cDNA, clone SLE222. 1070 0.0 2
(BJ407791) Dictyostelium discoideum cDNA clone:dds43l17, 3' ... 656 0.0 2
(BJ444170) Dictyostelium discoideum cDNA clone:ddv55a17, 3' ... 1021 0.0 2
(BJ442968) Dictyostelium discoideum cDNA clone:ddv51b15, 3' ... 1033 0.0 1
(BJ404695) Dictyostelium discoideum cDNA clone:dds29h10, 3' ... 932 0.0 1
(BJ384125) Dictyostelium discoideum cDNA clone:ddc48i07, 3' ... 910 0.0 1
(BJ396912) Dictyostelium discoideum cDNA clone:dds44l09, 5' ... 868 0.0 2
(BJ336682) Dictyostelium discoideum cDNA clone:dda54c19, 5' ... 900 0.0 1
(BJ367470) Dictyostelium discoideum cDNA clone:ddc42h24, 5' ... 862 0.0 2
(BJ404156) Dictyostelium discoideum cDNA clone:dds27f16, 3' ... 878 0.0 1
(BJ396499) Dictyostelium discoideum cDNA clone:dds42k06, 5' ... 872 0.0 1
(C90239) Dictyostelium discoideum slug cDNA, clone SSI444. 640 0.0 3
(BJ404190) Dictyostelium discoideum cDNA clone:dds27n17, 3' ... 850 0.0 1
(BJ407558) Dictyostelium discoideum cDNA clone:dds38n22, 3' ... 835 0.0 1
(BJ392411) Dictyostelium discoideum cDNA clone:dds27f16, 5' ... 761 0.0 1
(BJ436849) Dictyostelium discoideum cDNA clone:ddv32m10, 3' ... 739 0.0 1
(BJ353363) Dictyostelium discoideum cDNA clone:dda49l23, 3' ... 607 0.0 2
(AU053598) Dictyostelium discoideum slug cDNA, clone SLJ191. 379 e-114 2
(BJ339941) Dictyostelium discoideum cDNA clone:dda11e03, 3' ... 323 e-107 2
(BJ354307) Dictyostelium discoideum cDNA clone:dda53o03, 3' ... 133 1e-28 2
(BJ393603) Dictyostelium discoideum cDNA clone:dds31n21, 5' ... 76 4e-15 2
(DL174212) Methods for Identifying the Target of a Compound ... 62 3e-10 3
(AX489404) Sequence 6704 from Patent WO02053728. 62 3e-10 3
(AR549054) Sequence 4185 from patent US 6747137. 62 3e-10 3
(AL394098) T3 end of clone AR0AA015A07 of library AR0AA from... 58 3e-09 2
(AM989986) Zygosaccharomyces rouxii strain CBS 732 Contig7. 58 7e-07 5
(DY885658) CeleSEQ1018 Cunninghamella elegans pBluescript (E... 44 1e-06 3
(AM989977) Zygosaccharomyces rouxii strain ATCC 42981, POP2 ... 58 7e-06 4
(AZ928392) 479.dif09b09.s1 Saccharomyces kluyveri Lachancea ... 66 8e-06 1
(CT812777) Paramecium tetraurelia 5-PRIME EST from clone LK0... 64 3e-05 1
(CT801402) Paramecium tetraurelia 5-PRIME EST from clone LK0... 64 3e-05 1
(CT776692) Paramecium tetraurelia 5-PRIME EST from clone LK0... 64 3e-05 1
(CT772303) Paramecium tetraurelia 5-PRIME EST from clone LK0... 64 3e-05 1
(EL573311) Physarum03278 Physarum polycephalum starvation st... 52 1e-04 2
(FK127737) XABT166501.b1 Gateway compatible cien cDNA librar... 34 1e-04 3
(GD173335) OXAX-aaa45g01.g1 Oxytricha_pSMART_OXAX Sterkiella... 56 0.008 1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 54 0.032 1
(AC084621) Caenorhabditis briggsae cosmid G44O14, complete s... 54 0.032 1
(FE232941) CAPG2017.fwd CAPG Naegleria gruberi amoeba stage ... 36 0.093 4
(FE235529) CAPG3408.fwd CAPG Naegleria gruberi amoeba stage ... 34 0.098 4
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.12 13
(AM989976) Zygosaccharomyces rouxii strain ATCC 42981, POP2 ... 52 0.13 1
(EI309683) GM_WBc0039J11.r GM_WBc Glycine max genomic clone ... 52 0.13 1
(EI308384) GM_WBc0037N08.f GM_WBc Glycine max genomic clone ... 52 0.13 1
(CV391731) QV2-NN0045-181200-558-c12 NN0045 Homo sapiens cDN... 52 0.13 1
(BJ423026) Dictyostelium discoideum cDNA clone:ddv47g23, 5' ... 52 0.13 1
(BZ296503) CG2087.f11 Candida glabrata Random Genomic Librar... 42 0.27 2
(AC189034) Gallus gallus BAC clone CH261-83E11 from chromoso... 50 0.50 1
(AC187592) Gallus gallus BAC clone CH261-124L19 from chromos... 50 0.50 1
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 50 0.50 1
(AB066287) Colwellia maris icl gene for isocitrate lyase, co... 50 0.50 1
(CB928143) ABA1_36_A07.g1_A012 Abscisic acid-treated seedlin... 42 0.55 3
(EJ803238) 1093017442088 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.3 2
(FF756658) XABT63565.fwd Gateway compatible cien cDNA librar... 34 1.4 2
(FK081864) XABT137190.b1 Gateway compatible cien cDNA librar... 34 1.4 2
(FF798542) XABT91797.fwd Gateway compatible cien cDNA librar... 34 1.4 2
(CC303934) CH261-59L11_Sp6.1 CH261 Gallus gallus genomic clo... 46 1.9 2
(BV166645) RAB2B_1055 Rhesus macaque genomic DNA Macaca mula... 48 2.0 1
(EH381154) P20-52.4_H10_033.ab1 Marmoset hippocampus normali... 48 2.0 1
(EB516459) 289437 Pigtailed macaque ovary library Macaca nem... 48 2.0 1
(DY342697) OB_SEb07I19.f OB_SEb Ocimum basilicum cDNA clone ... 48 2.0 1
(DY340300) OB_SEb02D16.f OB_SEb Ocimum basilicum cDNA clone ... 48 2.0 1
(CO648230) ILLUMIGEN_MCQ_41537 Katze_MMPB2 Macaca mulatta cD... 48 2.0 1
(GE877274) 1112870206469 BABEVCEREB-C-01-1-7KB Papio anubis ... 48 2.0 1
(GE848686) 1112869887412 BABEVCEREB-C-01-1-7KB Papio anubis ... 48 2.0 1
(FK919154) EST_lsal_evj_945958 lsalevj mixed_tissue_mixed_st... 48 2.0 1
(FK905334) EST_lsal_evj_945641 lsalevj mixed_tissue_mixed_st... 48 2.0 1
(FF133302) CJAH-aad75c01.b1 Caenorhabditis_japonica_CJAH1_ES... 48 2.0 1
(EX477891) EST_lsal_evj_798726 lsalevj mixed_tissue_mixed_st... 48 2.0 1
(AL627268) Salmonella enterica serovar Typhi (Salmonella typ... 48 2.0 1
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 48 2.0 1
(AE014613) Salmonella enterica subsp. enterica serovar Typhi... 48 2.0 1
(AQ247763) HS_2063_A2_D01_MR CIT Approved Human Genomic Sper... 36 2.6 3
(CC788500) ZMMBBb0157A24.f ZMMBBb Zea mays subsp. mays genom... 42 3.0 2
(EF536336) Photobacterium leiognathi strain lnuch.21.1 lux-r... 42 3.2 2
(EU122286) Photobacterium mandapamensis strain ajapo.4.20 lu... 42 3.4 2
(EL489232) CHUS4410.b1_D23.ab1 CHU(LMS) puzzle sunflower Hel... 40 3.5 2
(EF536334) Photobacterium leiognathi strain lelon.2.1 lux-ri... 42 3.5 2
(BI951953) HVSMEm0004A02f Hordeum vulgare green seedling EST... 40 3.8 2
(CC748176) ZMMBBb0126P24.f ZMMBBb Zea mays subsp. mays genom... 42 3.9 2
(BZ322240) ia63c08.g1 WGS-ZmaysF (JM107 adapted methyl filte... 42 3.9 2
(BZ306227) hx39a02.b1 WGS-ZmaysF (JM107 adapted methyl filte... 42 3.9 2
(BH869821) hm54f12.g1 WGS-ZmaysF (JM107 adapted methyl filte... 42 3.9 2
(FD176557) CBZA13585.b1 CBZA: Normalized channel catfish cDN... 38 4.2 2
(EF536332) Photobacterium leiognathi strain lnuch.13.1 hypot... 42 4.7 2
(FD033214) CBCZ501.b2 CBCZ: cDNA library made from Channel c... 38 4.7 2
(ET165439) CP02-S3-036-196-G06-EM.F WGS1 Moniliophthora pern... 34 5.0 2
(AM620739) Entamoeba invadens IP1 GSS, clone inv131a09.p1k. 34 5.0 2
(AM614949) Entamoeba invadens IP1 GSS, clone inv054d01.p1k. 34 5.1 2
(EJ173135) 1092344090391 Global-Ocean-Sampling_GS-27-01-01-1... 40 5.3 2
(CG877933) ZMMBBb0497K12f ZMMBBb (HindIII) Zea mays subsp. m... 42 5.7 2
(BX890559) Zebrafish DNA sequence from clone DKEY-52J6 in li... 46 7.7 1
(CT954229) M.truncatula DNA sequence from clone MTH2-180D15 ... 46 7.7 1
(EF133526) Trichechus manatus latirostris clone Tma10 micros... 46 7.7 1
(AL157881) Human DNA sequence from clone RP11-104M22 on chro... 46 7.7 1
(AC132076) Bos taurus clone RP42-562J15, WORKING DRAFT SEQUE... 46 7.7 1
(BX927305) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 7.7 1
(AP000882) Homo sapiens genomic DNA, chromosome 18p11.3 clon... 46 7.7 1
(AL590646) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 7.7 1
(EK135516) 1093012281589 Global-Ocean-Sampling_GS-31-01-01-1... 46 7.7 1
(DU258697) 1098574187811 CHORI-243 Ovis aries genomic clone ... 46 7.7 1
(DE954514) Macropus eugenii DNA, BAC clone: MEB1-153L12_R, 3... 46 7.7 1
(DE862819) Macropus eugenii DNA, BAC clone: MEB1-030A03_F, 5... 46 7.7 1
(CZ123471) OA_BBa0011N10.f OA_BBa Oryza alta genomic clone O... 46 7.7 1
(CR494028) mth2-143D21FM1 BAC end, cultivar Jemalong A17 of ... 46 7.7 1
(CE456706) tigr-gss-dog-17000319829777 Dog Library Canis lup... 46 7.7 1
(ES398965) MUT07-M11.y1d-s SHGC-MUT Mytilus californianus cD... 46 7.7 1
(EB651631) GmUSCL12pBlueScriptR37l06f1 Gillichthys liver lib... 46 7.7 1
(DW018320) EST1227281 MTY Medicago truncatula cDNA clone MTY... 46 7.7 1
(CX525023) s13dNF19F06AT059_478680 Aphid-Infected Shoots Med... 46 7.7 1
(CK548414) swkz0_003365.z1 swk Bombyx mori cDNA, mRNA sequence. 46 7.7 1
(CF878215) tric016xp13.g2 T.reesei mycelial culture, Version... 46 7.7 1
(CF875613) tric008xi17.g3 T.reesei mycelial culture, Version... 46 7.7 1
(CF875254) tric008xi17.g1 T.reesei mycelial culture, Version... 46 7.7 1
(BQ164805) EST610674 KVKC Medicago truncatula cDNA clone pKV... 46 7.7 1
(AW695007) NF082C09ST1F1069 Developing stem Medicago truncat... 46 7.7 1
(EV255646) MTYCN21TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 7.7 1
(ES576839) FPS014.CR_P08 LSG10-01 Lymnaea stagnalis cDNA clo... 46 7.7 1
(CP000472) Shewanella piezotolerans WP3, complete genome. 46 7.7 1
(CP000083) Colwellia psychrerythraea 34H, complete genome. 46 7.7 1
(CD255174) AGENCOURT_14157711 NICHD_XGC_Brn1 Xenopus laevis ... 36 8.3 2
(AC146993) Lytechinus variegatus clone BLV-223C1, WORKING DR... 40 9.4 6

>(BJ354589) Dictyostelium discoideum cDNA clone:dda54j03, 3' end,
single read.
Length = 694

Score = 1366 bits (689), Expect = 0.0
Identities = 691/692 (99%)
Strand = Plus / Minus


Query: 2153 cccagcattgtcattagaaggtgtaccaaatagagattgtcttcatcttaccaagaccta 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 694 cccagcattgtcattagaaggtgtaccaaatagagattgtcttcatcttaccaagacnta 635


Query: 2213 tggtattgagagtgtaaatactcttttccgtggtaccatccgttataaaggtttctgtca 2272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tggtattgagagtgtaaatactcttttccgtggtaccatccgttataaaggtttctgtca 575


Query: 2273 agtcatggaagctgccgtcgaaattggtctattggataccactagcaaatcacatctcgc 2332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agtcatggaagctgccgtcgaaattggtctattggataccactagcaaatcacatctcgc 515


Query: 2333 cccatccgccccaccaatgtcatggaatctcgcaatgcgtcatatcttaccaattcctca 2392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cccatccgccccaccaatgtcatggaatctcgcaatgcgtcatatcttaccaattcctca 455


Query: 2393 aagtgaaggtattccaactcaagaacttttaagaagaaaacttagaactagaagaggtta 2452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aagtgaaggtattccaactcaagaacttttaagaagaaaacttagaactagaagaggtta 395


Query: 2453 tccttcaaaaggctatgacgatgataagattacctatatcctttacgtctttgagtggtt 2512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tccttcaaaaggctatgacgatgataagattacctatatcctttacgtctttgagtggtt 335


Query: 2513 agatatctttagtgaaaagaataatgtcgctcaatgtggtaactatttcgaagctttcac 2572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agatatctttagtgaaaagaataatgtcgctcaatgtggtaactatttcgaagctttcac 275


Query: 2573 agagttattgaaaactaaactcaatctcttaccatcagaaagagatttaatcattttaca 2632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agagttattgaaaactaaactcaatctcttaccatcagaaagagatttaatcattttaca 215


Query: 2633 taatgtcgttggtatcgaatgggatggtggtaaacatgaaactaaaacttcaacactcgt 2692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 taatgtcgttggtatcgaatgggatggtggtaaacatgaaactaaaacttcaacactcgt 155


Query: 2693 ttactatggttcaaaagatcaatctgctgttagcactgtagttggtttaccagttgctat 2752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ttactatggttcaaaagatcaatctgctgttagcactgtagttggtttaccagttgctat 95


Query: 2753 cgcagctgaattattggttgaaaatcaaattaaagaagttggtgcaattagaccaatcac 2812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cgcagctgaattattggttgaaaatcaaattaaagaagttggtgcaattagaccaatcac 35


Query: 2813 taaagaattttataaaccaatgttaaaatcac 2844
||||||||||||||||||||||||||||||||
Sbjct: 34 taaagaattttataaaccaatgttaaaatcac 3

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 3,340,305,789
Number of extensions: 192842265
Number of successful extensions: 15150983
Number of sequences better than 10.0: 146
Length of query: 2939
Length of database: 101,790,757,118
Length adjustment: 25
Effective length of query: 2914
Effective length of database: 99,238,119,368
Effective search space: 289179879838352
Effective search space used: 289179879838352
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.28
Homology vs Protein
Query= Contig-U16495-1 (Contig-U16495-1Q) /CSM_Contig/Contig-U16495-1Q.Seq.d
(2939 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, m... 647 0.0
AY751465_1(AY751465|pid:none) Oncorhynchus mykiss lysine ketoglu... 639 0.0
(A2VCW9) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 627 e-177
AJ224761_1(AJ224761|pid:none) Mus musculus mRNA encoding lysine-... 625 e-177
(Q99K67) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 625 e-177
AK136216_1(AK136216|pid:none) Mus musculus in vitro fertilized e... 622 e-176
(A8E657) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 612 e-173
AF038615_5(AF038615|pid:none) Caenorhabditis elegans cosmid R02D... 607 e-171
U95758_1(U95758|pid:none) Arabidopsis thaliana lysine-ketoglutar... 382 e-104
U90522_1(U90522|pid:none) Arabidopsis thaliana lysine-ketoglutar... 382 e-104
(Q9SMZ4) RecName: Full=Alpha-aminoadipic semialdehyde synthase; ... 381 e-104
AF264147_1(AF264147|pid:none) Gossypium hirsutum monofunctional ... 368 e-100
AF264146_1(AF264146|pid:none) Gossypium hirsutum bifunctional ly... 367 1e-99
BT062000_1(BT062000|pid:none) Zea mays full-length cDNA clone ZM... 365 4e-99
T02930(T02930)lysine-ketoglutarate reductase / saccharopine dehy... 340 2e-91
AL513443_24(AL513443|pid:none) Neurospora crassa DNA linkage gro... 297 1e-78
FM992690_618(FM992690|pid:none) Candida dubliniensis CD36 chromo... 289 5e-76
AM920437_580(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 285 5e-75
CR382138_765(CR382138|pid:none) Debaryomyces hansenii strain CBS... 283 2e-74
(Q9P4R4) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 283 3e-74
AF144424_1(AF144424|pid:none) Magnaporthe grisea saccharopine re... 281 1e-73
AM270078_29(AM270078|pid:none) Aspergillus niger contig An04c017... 280 2e-73
CR382130_918(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 280 2e-73
AP008208_2746(AP008208|pid:none) Oryza sativa (japonica cultivar... 280 2e-73
CU640366_362(CU640366|pid:none) Podospora anserina genomic DNA c... 278 6e-73
CR382123_810(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 277 2e-72
AE017347_117(AE017347|pid:none) Cryptococcus neoformans var. neo... 276 2e-72
AY486138_1(AY486138|pid:none) Cryptococcus neoformans var. grubi... 275 5e-72
(O59711) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 274 1e-71
FN178523_1(FN178523|pid:none) Ustilago maydis mRNA for spermidin... 273 2e-71
CR380949_137(CR380949|pid:none) Candida glabrata strain CBS138 c... 273 4e-71
(P38999) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 269 4e-70
AM989986_8(AM989986|pid:none) Zygosaccharomyces rouxii strain CB... 263 2e-68
AK294326_1(AK294326|pid:none) Homo sapiens cDNA FLJ57358 complet... 259 3e-67
(Q54NG9) RecName: Full=Probable saccharopine dehydrogenase [NADP... 258 1e-66
AY039906_1(AY039906|pid:none) Arabidopsis thaliana AT4g33150/F4I... 256 4e-66
AP007154_209(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 243 4e-62
AM398681_2309(AM398681|pid:none) Flavobacterium psychrophilum JI... 240 3e-61
AP004095_4(AP004095|pid:none) Oryza sativa Japonica Group genomi... 223 4e-56
CP000383_3314(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 209 6e-52
CP000383_2666(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 203 3e-50
AK064521_1(AK064521|pid:none) Oryza sativa Japonica Group cDNA c... 203 3e-50
CP000806_3686(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 188 9e-46
AK317558_1(AK317558|pid:none) Arabidopsis thaliana AT4G33150 mRN... 168 9e-40
AF042184_1(AF042184|pid:none) Brassica napus lysine-ketoglutarat... 145 8e-33
CP000377_106(CP000377|pid:none) Silicibacter sp. TM1040, complet... 115 1e-23
CP001087_1515(CP001087|pid:none) Desulfobacterium autotrophicum ... 112 1e-22
AF191667_1(AF191667|pid:none) Brassica oleracea lysine-ketogluta... 108 9e-22
AF191666_1(AF191666|pid:none) Brassica napus lysine-ketoglutarat... 107 3e-21
AF293461_1(AF293461|pid:none) Brassica napus lysine-ketoglutarat... 100 5e-19
CP000850_1020(CP000850|pid:none) Salinispora arenicola CNS-205, ... 95 2e-17
CP000855_431(CP000855|pid:none) Thermococcus onnurineus NA1, com... 83 5e-14
DQ219481_1(DQ219481|pid:none) Wheat saccharopin dehydrogenase-li... 82 9e-14
CP001463_238(CP001463|pid:none) Thermococcus sibiricus MM 739, c... 80 3e-13
AP006878_876(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 80 4e-13
CP001622_1808(CP001622|pid:none) Rhizobium leguminosarum bv. tri... 77 3e-12
(Q7SFX6) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 77 4e-12
AL445065_34(AL445065|pid:none) Thermoplasma acidophilum complete... 77 5e-12
CR382135_302(CR382135|pid:none) Debaryomyces hansenii strain CBS... 77 5e-12
X77362_1(X77362|pid:none) S.cerevisiae LYS1 gene. 75 1e-11
(P38998) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 75 1e-11
CP001638_364(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 74 2e-11
CP000922_1233(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 74 2e-11
CP000557_345(CP000557|pid:none) Geobacillus thermodenitrificans ... 74 3e-11
CU928176_18(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 74 3e-11
CP001398_1421(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 73 5e-11
CP000362_653(CP000362|pid:none) Roseobacter denitrificans OCh 11... 73 7e-11
(Q6FU27) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 73 7e-11
BA000043_375(BA000043|pid:none) Geobacillus kaustophilus HTA426 ... 70 3e-10
AM270017_2(AM270017|pid:none) Aspergillus niger contig An02c0220... 70 3e-10
CP000504_1591(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 70 3e-10
AE009441_1067(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 70 6e-10
CP000968_951(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 69 8e-10
CP000660_631(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 69 1e-09
(P43065) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 69 1e-09
AL591688_3042(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 67 4e-09
AB052732_3(AB052732|pid:none) Geobacillus stearothermophilus gen... 67 4e-09
GN101373_1(GN101373|pid:none) Sequence 6154 from Patent WO200903... 67 5e-09
AE017354_1324(AE017354|pid:none) Legionella pneumophila subsp. p... 67 5e-09
(Q75BV4) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 66 8e-09
FN297828_1(FN297828|pid:none) Gibberella fujikuroi mRNA for puta... 66 8e-09
CP000159_2494(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 65 1e-08
CP000675_1425(CP000675|pid:none) Legionella pneumophila str. Cor... 65 1e-08
CU633901_224(CU633901|pid:none) Podospora anserina genomic DNA c... 64 3e-08
CP000661_2916(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 63 7e-08
CP000031_3230(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 62 1e-07
CP001014_628(CP001014|pid:none) Thermoproteus neutrophilus V24St... 61 3e-07
CR378678_201(CR378678|pid:none) Photobacterium profundum SS9 chr... 61 3e-07
CP000577_2731(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 61 3e-07
CP000230_2802(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 60 4e-07
CP000143_2704(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 60 5e-07
GN101381_1(GN101381|pid:none) Sequence 6162 from Patent WO200903... 60 6e-07
(Q870G1) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 60 6e-07
CP000155_1426(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 58 2e-06
CP000817_827(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 58 2e-06
CP000086_2269(CP000086|pid:none) Burkholderia thailandensis E264... 57 4e-06
BX571965_1607(BX571965|pid:none) Burkholderia pseudomallei strai... 56 9e-06
CP000010_835(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 55 1e-05
AP009384_815(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 54 3e-05
BA000012_3438(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 53 7e-05
BA000011_1294(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 52 2e-04
AM747720_1790(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 50 4e-04
CP000316_2115(CP000316|pid:none) Polaromonas sp. JS666, complete... 50 5e-04
AP009385_1675(AP009385|pid:none) Burkholderia multivorans ATCC 1... 49 8e-04
CP001392_1814(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 49 0.001
CP000440_1639(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 49 0.001
CP000628_454(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 49 0.001
AP006627_763(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co... 48 0.002
CP000285_2946(CP000285|pid:none) Chromohalobacter salexigens DSM... 47 0.003
DQ165182_1(DQ165182|pid:none) Achromobacter denitrificans strain... 47 0.004
CP000416_1009(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 47 0.005
(Q09694) RecName: Full=Saccharopine dehydrogenase [NAD+, L-lysin... 46 0.009
CP000386_2837(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 45 0.012
CP000614_1644(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 45 0.016
AP009049_586(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 45 0.020
BA000028_862(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ... 45 0.020
EF157668_3(EF157668|pid:none) Uncultured bacterium CBNPD1 BAC cl... 45 0.020
CP000539_1957(CP000539|pid:none) Acidovorax sp. JS42, complete g... 45 0.020
AM236080_380(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 44 0.035
AE003853_551(AE003853|pid:none) Vibrio cholerae O1 biovar eltor ... 44 0.045
(Q49YD9) RecName: Full=Alanine dehydrogenase; EC=1.4.1.... 43 0.077
CP001191_2(CP001191|pid:none) Rhizobium leguminosarum bv. trifol... 42 0.17
CP000133_350(CP000133|pid:none) Rhizobium etli CFN 42, complete ... 42 0.17
CP001074_389(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 41 0.29
BA000038_812(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 40 0.65
CP001078_878(CP001078|pid:none) Clostridium botulinum E3 str. Al... 40 0.65
CP000352_3194(CP000352|pid:none) Ralstonia metallidurans CH34, c... 39 0.85
CP000932_443(CP000932|pid:none) Campylobacter lari RM2100, compl... 39 0.85
CP000758_437(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 39 0.85
CP000814_164(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 39 1.1
CP000155_2891(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 39 1.1
CP001056_1413(CP001056|pid:none) Clostridium botulinum B str. Ek... 39 1.1
CP000481_2018(CP000481|pid:none) Acidothermus cellulolyticus 11B... 39 1.5
BC091271_1(BC091271|pid:none) Rattus norvegicus nicotinamide nuc... 39 1.5
AK085903_1(AK085903|pid:none) Mus musculus 16 days neonate heart... 39 1.5
AK159694_1(AK159694|pid:none) Mus musculus osteoclast-like cell ... 39 1.5
CP001056_948(CP001056|pid:none) Clostridium botulinum B str. Ekl... 39 1.5
S54876(S54876) NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1)... 39 1.5
AK087064_1(AK087064|pid:none) Mus musculus 0 day neonate lung cD... 39 1.5
AK088044_1(AK088044|pid:none) Mus musculus 2 days neonate thymus... 39 1.5
AK040460_1(AK040460|pid:none) Mus musculus 0 day neonate thymus ... 39 1.5
CP000090_3029(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 39 1.5
AM295250_1304(AM295250|pid:none) Staphylococcus carnosus subsp. ... 38 1.9
AL111168_160(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 38 1.9
CP001072_1466(CP001072|pid:none) Helicobacter pylori Shi470, com... 38 1.9
CP000439_941(CP000439|pid:none) Francisella tularensis subsp. no... 38 1.9
AB201385_1(AB201385|pid:none) Danio rerio cnpy3 mRNA for Canopy3... 38 1.9
CP001097_739(CP001097|pid:none) Chlorobium limicola DSM 245, com... 38 1.9
(A3KNS2) RecName: Full=Protein canopy homolog 3; AltName: Full=T... 38 1.9
BC083297_1(BC083297|pid:none) Danio rerio trinucleotide repeat c... 38 1.9
AP011115_1286(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 38 2.5
CP000951_971(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 38 2.5
AE017262_2246(AE017262|pid:none) Listeria monocytogenes str. 4b ... 37 3.2
CP001096_1674(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 37 3.2
CP000089_2126(CP000089|pid:none) Dechloromonas aromatica RCB, co... 37 3.2
AM479530_1(AM479530|pid:none) Vitis vinifera contig VV78X095298.... 37 3.2
(Q4JBY3) RecName: Full=Archaeosine biosynthesis protein queC; ... 37 3.2
CP000090_1161(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 37 4.2
CP000699_4126(CP000699|pid:none) Sphingomonas wittichii RW1, com... 37 4.2
AC147179_21(AC147179|pid:none) Medicago truncatula clone mth2-14... 37 4.2
AE005673_3279(AE005673|pid:none) Caulobacter crescentus CB15, co... 37 4.2
CP001340_3412(CP001340|pid:none) Caulobacter crescentus NA1000, ... 37 4.2
AM260479_3263(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 37 5.5
(Q67ET0) RecName: Full=Taste receptor type 2 member 4; ... 37 5.5
CP000284_2157(CP000284|pid:none) Methylobacillus flagellatus KT,... 37 5.5
DQ988994_12(DQ988994|pid:none) Streptomyces ghanaensis putative ... 37 5.5
CP000789_1703(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 37 5.5
CP000828_696(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 37 5.5
AE017221_1076(AE017221|pid:none) Thermus thermophilus HB27, comp... 37 5.5
D25537_1(D25537|pid:none) Halocynthia roretzi mRNA for HrEpiB, c... 37 5.5
AP006618_1020(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 37 5.5
CP000361_1669(CP000361|pid:none) Arcobacter butzleri RM4018, com... 37 5.5
CP001034_1645(CP001034|pid:none) Natranaerobius thermophilus JW/... 36 7.2
EU973409_1(EU973409|pid:none) Zea mays clone 398199 unknown mRNA... 36 7.2
CP001175_299(CP001175|pid:none) Listeria monocytogenes HCC23, co... 36 7.2
CP001103_3323(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 36 7.2
AJ249399_3(AJ249399|pid:none) Listeria welshimeri rplS (partial)... 36 7.2
BC166246_1(BC166246|pid:none) Xenopus tropicalis hypothetical pr... 36 7.2
AY458640_7(AY458640|pid:none) Uncultured marine bacterium 443 cl... 36 7.2
(Q8EBE6) RecName: Full=Chaperone protein clpB; &AE014299_3479(A... 36 9.4
BX897699_1591(BX897699|pid:none) Bartonella henselae strain Hous... 36 9.4
T15521(T15521) hypothetical protein C15H9.1 - Caenorhabditis ele... 36 9.4
CP000388_743(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 36 9.4
AE001437_1199(AE001437|pid:none) Clostridium acetobutylicum ATCC... 36 9.4

>BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, mRNA
(cDNA clone MGC:82978 IMAGE:5515753), complete cds.
Length = 927

Score = 647 bits (1670), Expect = 0.0
Identities = 365/914 (39%), Positives = 538/914 (58%), Gaps = 24/914 (2%)
Frame = +3

Query: 186 LGIRREDKNRWERRAPLAPSHVEELVKKGIKVIVQPSTLRNYPNVLYEKAGAIIQEDLKE 365
L IRRED N WERRAPLAP HV+EL G KV+VQPS R Y+KAG IIQED+++
Sbjct: 26 LAIRREDINVWERRAPLAPKHVKELTSLGYKVLVQPSNRRAIHEKEYKKAGGIIQEDIQD 85

Query: 366 CDVIVAVKEVPSEYLYNDKTYIFFSHTIKAQPYNMAMLDEINKKRIRLIDYERITDDQNR 545
+IV VK P E L +KTY FFSHTIKAQ NM++LDEI K IRLIDYE++ D +
Sbjct: 86 ASLIVGVKRPPEEKLLPNKTYAFFSHTIKAQEANMSLLDEILKLEIRLIDYEKMVDHRGV 145

Query: 546 RLVRFGSFAGYAGMIDMLHALGDRLLAKGFSTPFLHVGYSYVYSKLESAMEAVKAIGEEI 725
R+V FG +AG AGMI+MLH LG R LA G TPF+H+G ++ Y A++AV+ G EI
Sbjct: 146 RVVAFGQWAGVAGMINMLHGLGLRFLALGHHTPFMHIGMAHNYRNSSQAVQAVRDAGYEI 205

Query: 726 SQVGLPDDLLPFTFAFTSDGAVSQGALKIFKLLPHKMVTPDEMVELVKNKKGERGILYGT 905
S +P + P TF FT G VS+GA +I LP + V P E+ E+ +K G+ +Y T
Sbjct: 206 SLGLMPKSIGPLTFVFTGTGNVSKGAQEIINELPCEFVEPHELKEV--SKTGDLRKVYAT 263

Query: 906 IITSEHMAAPIDPEKKFNKAEYYADPSKYKPIFCEKYAPYISCIINCMYWDAKYPRLITI 1085
+++ H + ++ EY +P Y F APY +C+IN +YWD PRL+T
Sbjct: 264 VLSRHHHLVR-KTDGVYDPVEYDKNPELYTSRFNTDIAPYTTCLINGIYWDPGSPRLLTR 322

Query: 1086 RQMEELVETNNS-------------RLIGVADISADVNGSLEFLMTTTSIDSPLYIYDPR 1226
+ + L+ S +L+ + DISAD GS+EF+ T+ID P +YD
Sbjct: 323 QDAQRLLAPVKSSTVATEGCPELPHKLLAIGDISADTGGSIEFMTECTTIDMPFCMYDAD 382

Query: 1227 TQEVHDPTTDQQYMYRDGILFLAVDNLPTEFPKEATQWFGDHLLKFMEQVVKSDPKLPYE 1406
+HD GIL ++DNLP + P EAT++FGD L ++E+++ SD P E
Sbjct: 383 QHIIHDSVEG------CGILMCSIDNLPAQLPIEATEYFGDMLFPYIEEMLMSDDMKPME 436

Query: 1407 KMTDIAPEMKRAIITCHGSLTPPFEYITELRKKRE--ELTT-----RILILGAGSVSYPT 1565
+ T +P ++ A+I G LTP ++YI +LR+ RE +L T +IL+LG+G VS P
Sbjct: 437 QQT-FSPVVRNAVIASSGCLTPKYKYIQKLRESREHAQLMTQGTKKKILVLGSGYVSGPV 495

Query: 1566 ISYLARNPSHKLTVGDVSIEQSKKAASYDPECQTVVIDV-NDQEKLDEIVKRHRVVVSLL 1742
I+YL R+P+ ++T + +Q + + +D+ ++EKL ++K+H +VVSLL
Sbjct: 496 INYLTRDPNVEITAVSMVKDQVDHLSKRYHNTTPIAMDIYKNEEKLSTLIKKHDLVVSLL 555

Query: 1743 PDELTILVAKSCIRQKKHMVSPGYMSSEMEALDKDAKEAGITLLNEMGLDPGIDHLEACR 1922
P VAK CI+ K ++V+ Y++ M+ L + A++AGI ++ EMGLDPG+DH+ A
Sbjct: 556 PYSAHPSVAKKCIKNKVNLVTASYITPAMKELQQSAEDAGIIIVGEMGLDPGLDHMLAME 615

Query: 1923 VINDATNKGGKVRTFVSWCGGLPAPESSDNPLGYKFTWSPKEIISGVTNDSKFRRDGQDI 2102
+ A + G KV +++S+CGGLPAPE SDNPL YKF+WSP ++ + + +DGQ +
Sbjct: 616 CFDKAKDVGAKVESYISFCGGLPAPEFSDNPLRYKFSWSPLAVLFNTIQPATYLKDGQIV 675

Query: 2103 YI-PGSEVYKRVQPVDIFPALSLEGVPNRDCLHLTKTYGIESVNTLFRGTIRYKGFCQVM 2279
I G + + V +D FP L+LEG PNRD + YGI++ +TL RGT+RYKGFC M
Sbjct: 676 NIAAGGSLLESVNAMDCFPGLNLEGFPNRDSTKYAEPYGIQTAHTLMRGTLRYKGFCNAM 735

Query: 2280 EAAVEIGLLDTTSKSHLAPSAPPMSWNLAMRHILPIPQSEGIPT-QELLRRKLRTRRGYP 2456
V++GL+ T L +APP++W + H+L + S T +EL+ KL
Sbjct: 736 SGFVKLGLISTDPCPLLEVNAPPITWKELLCHLLNVSTSTSTDTFKELVYNKL------- 788

Query: 2457 SKGYDDDKITYILYVFEWLDIFSEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHN 2636
DK + +W + SE+ V + +A + L+ L+ P ERD+I+L N
Sbjct: 789 ------DKDDSNMEALQWFGLLSEE-PVPVADSIVDALAKHLEIMLSFGPGERDMIVLRN 841

Query: 2637 VVGIEWDGGKHETKTSTLVYYGS-KDQSAVSTVVGLPVAIAAELLVENQIKEVGAIRPIT 2813
+GI G E+K +LV YG SA++ VG P AIAA+++++ +++ G + P+T
Sbjct: 842 DIGIRHPSGHLESKNISLVVYGDVNGYSAMAKTVGYPTAIAAKMVLDGEVESRGLVIPLT 901

Query: 2814 KEFYKPMLKSLHKK 2855
K Y P+L+ + ++
Sbjct: 902 KNIYGPILERVREE 915

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 4,806,126,778
Number of extensions: 100568193
Number of successful extensions: 257135
Number of sequences better than 10.0: 184
Number of HSP's gapped: 256776
Number of HSP's successfully gapped: 206
Length of query: 979
Length of database: 1,061,185,681
Length adjustment: 139
Effective length of query: 840
Effective length of database: 606,871,409
Effective search space: 509771983560
Effective search space used: 509771983560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.54 gvh: 0.10 alm: 0.28 top: 0.43 tms: 0.07 mit: 0.39 mip: 0.06
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
16.0 %: vesicles of secretory system
16.0 %: nuclear
12.0 %: endoplasmic reticulum
8.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U16495-1 is cyt

VS (DIR, S) 0
VH (FL, L) 7
VF (FL, S) 0
AH (FL, L) 7
AF (FL, S) 2
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 10
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0