Contig-U03308-1
Contig ID Contig-U03308-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03308-1 (Contig-U03308-1Q) /CSM_Contig/Contig-U03308-1Q.Seq.d
AATAAATATACAGGTAATCAAATTGTTTTTAGTAATAAATATGCAACCAC
TTTTTTTGAAAAATTCCCAAAATTAGCATTTTTAAACAATGTCACAAATT
TAGCACCAATGATGAAATGGTCACTTTCAATTGTACCAATTACACAAATT
TTTTCAGGAACTAAATTACCAGAAAATATAGATGTTTATCAAGCATCATC
ATTATGTGCTACTGGTTCAATTTGGACTTATTATGCCACATTAATTTCCC
CACAAAATACAGGTACAAGAATGTTAGCAGCTTGTAATGCAGCAATGGCT
GCGTGTCATGGTTATAATATTTATCGTAGAACGAAATGGGAAAAAAGTCA
AATTATACCAATCGAAAATAAAAATTAATTAAATGTAAAAAAAAATAAAA
ATAAAAAATAAAATTAAATAACAATAAATAGCGAAAAGTTGTAATTTAAA
CAATATTATTCTCCTCAAAATAAAATAAAATAATATATTTATTCTCAAAA

Gap no gap
Contig length 500
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 249309
End point 249809
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 2
Link to clone list U03308
List of clone(s)

est1=SSA279E,1,417
est2=FC-IC0124F,265,501
Translated Amino Acid sequence
NKYTGNQIVFSNKYATTFFEKFPKLAFLNNVTNLAPMMKWSLSIVPITQIFSGTKLPENI
DVYQASSLCATGSIWTYYATLISPQNTGTRMLAACNAAMAACHGYNIYRRTKWEKSQIIP
IENKN*lnvkknknkk*n*itinsekl*fkqyyspqnkik*yiysq


Translated Amino Acid sequence (All Frames)
Frame A:
NKYTGNQIVFSNKYATTFFEKFPKLAFLNNVTNLAPMMKWSLSIVPITQIFSGTKLPENI
DVYQASSLCATGSIWTYYATLISPQNTGTRMLAACNAAMAACHGYNIYRRTKWEKSQIIP
IENKN*lnvkknknkk*n*itinsekl*fkqyyspqnkik*yiysq


Frame B:
iniqviklflvinmqplflknsqn*hf*tmsqi*hq**nghfqlyqlhkffqelnyqki*
mfikhhhyvllvqfglimph*fphkiqvqec*qlvmqqwlrvmviifiverngkkvklyq
skikin*m*kkikiknkik*q*iakscnlnniillkik*nnifilk


Frame C:
*iyr*sncf***icnhff*kipkisifkqchkfstndemvtfnctnytnffrn*itrkyr
clssiiimcywfnldllchinfptkyryknvssl*csngcvswl*yls*nemgkksnytn
rk*klikckkk*k*kiklnnnk*rkvvi*tilfssk*nkiiylfsk


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03308-1 (Contig-U03308-1Q)
/CSM_Contig/Contig-U03308-1Q.Seq.d
(500 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03308-1 (Contig-U03308-1Q) /CSM_Contig/Conti... 680 0.0
Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U04672-1 (Contig-U04672-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U01986-1 (Contig-U01986-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U14049-1 (Contig-U14049-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U08104-1 (Contig-U08104-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U05319-1 (Contig-U05319-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Conti... 36 0.035
Contig-U14607-1 (Contig-U14607-1Q) /CSM_Contig/Conti... 34 0.14

>Contig-U03308-1 (Contig-U03308-1Q) /CSM_Contig/Contig-U03308-1Q.Seq.d
Length = 500

Score = 680 bits (343), Expect = 0.0
Identities = 357/364 (98%)
Strand = Plus / Plus


Query: 1 aataaatatacaggtaatcaaattgtttttagtaataaatatgcaaccacnnnnnnngaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 aataaatatacaggtaatcaaattgtttttagtaataaatatgcaaccactttttttgaa 60


Query: 61 aaattcccaaaattagcatttttaaacaatgtcacaaatttagcaccaatgatgaaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattcccaaaattagcatttttaaacaatgtcacaaatttagcaccaatgatgaaatgg 120


Query: 121 tcactttcaattgtaccaattacacaaattttttcaggaactaaattaccagaaaatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcactttcaattgtaccaattacacaaattttttcaggaactaaattaccagaaaatata 180


Query: 181 gatgtttatcaagcatcatcattatgtgctactggttcaatttggacttattatgccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatgtttatcaagcatcatcattatgtgctactggttcaatttggacttattatgccaca 240


Query: 241 ttaatttccccacaaaatacaggtacaagaatgttagcagcttgtaatgcagcaatggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaatttccccacaaaatacaggtacaagaatgttagcagcttgtaatgcagcaatggct 300


Query: 301 gcgtgtcatggttataatatttatcgtagaacgaaatgggaaaaaagtcaaattatacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcgtgtcatggttataatatttatcgtagaacgaaatgggaaaaaagtcaaattatacca 360


Query: 361 atcg 364
||||
Sbjct: 361 atcg 364


Score = 172 bits (87), Expect = 2e-43
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 414 ttaaataacaataaatagcgaaaagttgtaatttaaacaatattattctcctcaaaataa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaaataacaataaatagcgaaaagttgtaatttaaacaatattattctcctcaaaataa 473


Query: 474 aataaaataatatatttattctcaaaa 500
|||||||||||||||||||||||||||
Sbjct: 474 aataaaataatatatttattctcaaaa 500


>Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Contig-U12269-1Q.Seq.d
Length = 1485

Score = 44.1 bits (22), Expect = 1e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 467 aaaataaaataaaataatatat 488
||||||||||||||||||||||
Sbjct: 819 aaaataaaataaaataatatat 840


>Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
Length = 1635

Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 467 aaaataaaataaaataatata 487
|||||||||||||||||||||
Sbjct: 1585 aaaataaaataaaataatata 1605


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,119
Number of Sequences: 6905
Number of extensions: 11119
Number of successful extensions: 2922
Number of sequences better than 10.0: 968
length of query: 500
length of database: 5,674,871
effective HSP length: 16
effective length of query: 484
effective length of database: 5,564,391
effective search space: 2693165244
effective search space used: 2693165244
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.30
Homology vs DNA
Query= Contig-U03308-1 (Contig-U03308-1Q) /CSM_Contig/Contig-U03308-1Q.Seq.d
(500 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C25615) Dictyostelium discoideum slug cDNA, clone SSA279. 458 e-168 3
(AU271358) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 137 6e-48 2
(FP020043) Brassica napus GSS, clone JBnB044M14, end read, p... 60 8e-05 1
(AC226017) Solanum lycopersicum chromosome 6 clone C06SLm006... 46 0.007 4
(AM444130) Vitis vinifera contig VV78X169657.1, whole genome... 52 0.021 1
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 52 0.021 1
(AC021486) Homo sapiens chromosome , clone RP11-73I6, comple... 52 0.021 1
(AC019239) Homo sapiens chromosome 18, clone RP11-346H17, co... 52 0.021 1
(AP001375) Homo sapiens genomic DNA, chromosome 18q21 clone:... 52 0.021 1
(AL844509) Plasmodium falciparum chromosome 13. 52 0.021 1
(AC015567) Homo sapiens chromosome 18 clone RP11-398L3 map 1... 52 0.021 1
(AC009579) Homo sapiens chromosome 4 clone RP11-116N19 map 4... 52 0.021 1
(EI424698) PV_GBa0014G07.r PV_GBa Phaseolus vulgaris genomic... 52 0.021 1
(BH960878) odj30h09.b1 B.oleracea002 Brassica oleracea genom... 52 0.021 1
(AY149028) Plasmodium chabaudi chabaudi strain AS clone YAC1... 34 0.036 6
(AC182770) Cavia porcellus clone CH234-460H21, WORKING DRAFT... 34 0.051 2
(AC183840) Cavia porcellus clone CH234-99K4, WORKING DRAFT S... 34 0.051 2
(AQ826807) HS_5495_B2_H05_T7A RPCI-11 Human Male BAC Library... 38 0.065 2
(AC133092) Mus musculus BAC clone RP23-404G6 from chromosome... 50 0.081 1
(AC215438) Solanum lycopersicum chromosome 2 clone C02HBa032... 50 0.081 1
(AC215382) Solanum lycopersicum chromosome 2 clone C02HBa010... 50 0.081 1
(GC697937) Sequence 13182 from patent US 6812339. 50 0.081 1
(AL034560) Plasmodium falciparum MAL3P8. 50 0.081 1
(AC107624) Homo sapiens chromosome 3 clone RP11-744H21, comp... 50 0.081 1
(AC095029) Homo sapiens chromosome 3 clone RP11-208J17, comp... 50 0.081 1
(AC008623) Homo sapiens chromosome 19 clone CTB-14D10, compl... 50 0.081 1
(AC006540) Homo sapiens chromosome 19, cosmid F23842, comple... 50 0.081 1
(AC004227) Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H... 50 0.081 1
(AC107014) Homo sapiens chromosome 3 clone RP11-207J16, *** ... 50 0.081 1
(CU019660) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.081 1
(CR847875) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.081 1
(AC219629) Bos taurus clone CH240-327A5, WORKING DRAFT SEQUE... 50 0.081 1
(AC163906) Bos taurus clone CH240-148K9, *** SEQUENCING IN P... 50 0.081 1
(AM602186) Entamoeba invadens IP1 GSS, clone inv015g11.p1k. 50 0.081 1
(ED560951) MUGQ_CH252P139C17Sp6_CN143_077 CHORI-252 Vervet M... 50 0.081 1
(EH386113) 1355 E. acervulina cDNA from second generation me... 50 0.081 1
(AL356798) Human DNA sequence from clone RP11-467B11 on chro... 40 0.11 4
(AC011404) Homo sapiens chromosome 5 clone CTB-43P18, comple... 40 0.15 3
(AL365322) Mouse DNA sequence from clone RP23-282D4 on chrom... 34 0.21 5
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 38 0.22 4
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29... 42 0.22 7
(AM489062) Vitis vinifera, whole genome shotgun sequence, co... 42 0.23 2
(AC123922) Mus musculus BAC clone RP24-198D1 from chromosome... 36 0.24 3
(AC129838) Pan troglodytes clone rp43-75h20, WORKING DRAFT S... 48 0.28 3
(CU929262) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.31 3
(CU651632) Zebrafish DNA sequence from clone CH1073-312B22 i... 48 0.32 1
(CU571083) Zebrafish DNA sequence from clone CH73-70K4 in li... 48 0.32 1
(AC165441) Mus musculus BAC clone RP24-548F24 from chromosom... 48 0.32 1
(AC121563) Mus musculus BAC clone RP23-198C23 from chromosom... 48 0.32 1
(AC102639) Mus musculus chromosome 3, clone RP23-461I15, com... 48 0.32 1
(AC211293) Macaca mulatta BAC CH250-419G7 (Children's Hospi... 48 0.32 1
(CU633440) M.truncatula DNA sequence from clone MTE1-22B18 o... 48 0.32 1
(AM437266) Vitis vinifera contig VV78X274279.10, whole genom... 48 0.32 1
(AM435003) Vitis vinifera contig VV78X250204.3, whole genome... 48 0.32 1
(AC199760) Medicago truncatula chromosome 2 BAC clone mth2-1... 48 0.32 1
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 48 0.32 1
(AC131198) Rattus norvegicus clone CH230-146N18, WORKING DRA... 48 0.32 1
(AC105516) Rattus norvegicus clone CH230-16A8, *** SEQUENCIN... 48 0.32 1
(AC102100) Mus musculus clone RP23-68D20, LOW-PASS SEQUENCE ... 48 0.32 1
(CU929655) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.32 1
(CU896576) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.32 1
(CU424433) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.32 1
(CU062481) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.32 1
(AC207635) Zea mays chromosome 3 clone CH201-186D16; ZMMBBc0... 48 0.32 1
(AC193720) Colobus guereza clone CH272-451F1, WORKING DRAFT ... 48 0.32 1
(AC190015) Colobus guereza clone CH272-461A11, WORKING DRAFT... 48 0.32 1
(AC167093) Sorex araneus clone SA_Ba-207B12, WORKING DRAFT S... 48 0.32 1
(FI239556) CccaBb022-P5JR CccABb Cajanus cajan genomic clone... 48 0.32 1
(AV024093) Mus musculus 18-day embryo cDNA, partial sequence... 48 0.32 1
(AM904127) Carica papaya EST, clone Cpap_008A10.g_080.ab1. 48 0.32 1
(AM904053) Carica papaya EST, clone Cpap_007C08.g_060.ab1. 48 0.32 1
(AM903943) Carica papaya EST, clone Cpap_006B04.g_030.ab1. 48 0.32 1
(AM903814) Carica papaya EST, clone Cpap_004G03.g_019.ab1. 48 0.32 1
(AM903513) Carica papaya EST, clone Cpap_001E09.g_071.ab1. 48 0.32 1
(EY894019) RR1DC86JQ RR1(CS) Raphanus raphanistrum subsp. ma... 48 0.32 1
(CU929273) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.33 3
(AC138843) Homo sapiens chromosome 5 clone RP11-1262M12, WOR... 40 0.36 3
(AM449809) Vitis vinifera contig VV78X002703.12, whole genom... 44 0.37 2
(AC199281) Ateles geoffroyi clone UC1-241E5, WORKING DRAFT S... 42 0.38 3
(AC163376) Bos taurus clone CH240-126B14, WORKING DRAFT SEQU... 42 0.39 3
(DC230816) Plasmodium berghei strain ANKA cDNA clone:SG01986... 42 0.44 2
(AC108863) Homo sapiens chromosome 8, clone CTD-2544N14, com... 46 0.44 2
(AL354721) Human DNA sequence from clone RP11-373E22 on chro... 40 0.53 2
(CT573480) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.61 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.66 2
(AC187491) Rhesus macaque BAC clone CH250-78H12 from chromos... 42 0.79 5
(CU640488) Zebrafish DNA sequence from clone CH73-19J14 in l... 40 0.81 2
(AY160102) Dictyostelium discoideum nucleotide exchange fact... 34 0.81 2
(AL935034) Zebrafish DNA sequence from clone CH211-160A3 in ... 44 0.90 3
(AC084126) Homo sapiens chromosome 8 clone CTD-2547D8 map 8,... 44 0.91 3
(CT954312) N.leucogenys DNA sequence from clone CH271-372B11. 42 1.0 3
(BX005459) Zebrafish DNA sequence from clone CH211-214N22 in... 34 1.1 5
(AC006896) Caenorhabditis elegans clone Y71H2X, *** SEQUENCI... 42 1.1 4
(AC008896) Homo sapiens chromosome 5 clone CTD-2235B13, comp... 46 1.1 2
(AC084131) Homo sapiens chromosome 8 clone CTC-270G24 map 8,... 40 1.1 2
(AL121867) Human DNA sequence from clone RP11-405O21 on chro... 44 1.1 2
(AC159112) Pan troglodytes BAC clone CH251-495D16 from chrom... 40 1.1 2
(CR388051) Zebrafish DNA sequence from clone CH211-239B6 in ... 42 1.3 4
(CU302205) Zebrafish DNA sequence from clone DKEY-79L8 in li... 46 1.3 1
(CT737227) Zebrafish DNA sequence from clone CH211-138K19 in... 46 1.3 1
(CR936905) Zebrafish DNA sequence from clone CH211-257L20 in... 46 1.3 1
(CR354437) Zebrafish DNA sequence from clone DKEY-11D10 in l... 46 1.3 1
(BX663508) Zebrafish DNA sequence from clone CH211-144B6 in ... 46 1.3 1
(BX510305) Zebrafish DNA sequence from clone CH211-107P11 in... 46 1.3 1
(BX470240) Zebrafish DNA sequence from clone CH211-92L17 in ... 46 1.3 1
(AL831726) Zebrafish DNA sequence from clone DKEY-49N23 in l... 46 1.3 1
(AC124439) Mus musculus BAC clone RP24-261N14 from chromosom... 46 1.3 1
(Z99530) Flaveria anomala gdcsH gene. 46 1.3 1
(AM481091) Vitis vinifera, whole genome shotgun sequence, co... 46 1.3 1
(AM476594) Vitis vinifera contig VV78X101650.7, whole genome... 46 1.3 1
(AM471118) Vitis vinifera contig VV78X163104.6, whole genome... 46 1.3 1
(AM463365) Vitis vinifera contig VV78X162287.3, whole genome... 46 1.3 1
(AM462795) Vitis vinifera contig VV78X128735.3, whole genome... 46 1.3 1
(AM460409) Vitis vinifera, whole genome shotgun sequence, co... 46 1.3 1
(AM445882) Vitis vinifera contig VV78X249003.6, whole genome... 46 1.3 1
(AM426883) Vitis vinifera contig VV78X138662.10, whole genom... 46 1.3 1
(AM423976) Vitis vinifera contig VV78X053946.17, whole genom... 46 1.3 1
(AC234113) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 46 1.3 1
(AC208482) Populus trichocarpa clone JGIACSB13-H05, complete... 46 1.3 1
(AC208480) Populus trichocarpa clone JGIACSB1081-D20, comple... 46 1.3 1
(AX347206) Sequence 2277 from Patent WO0200928. 46 1.3 1
(GN009390) Sequence 1831 from Patent EP2014669. 46 1.3 1
(AC169080) Erinaceus europaeus, clone XX-29441557E23, comple... 46 1.3 1
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1. 46 1.3 1
(AL023828) Caenorhabditis elegans YAC Y17G7B. 46 1.3 1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 46 1.3 1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 46 1.3 1
(AL591594) Human DNA sequence from clone RP11-424N15 on chro... 46 1.3 1
(AL512631) Human DNA sequence from clone RP11-138I18 on chro... 46 1.3 1
(AL354985) Human DNA sequence from clone RP11-493B21 on chro... 46 1.3 1
(AL080241) Human DNA sequence from clone RP11-541J16 on chro... 46 1.3 1
(AC092757) Homo sapiens chromosome 15 clone RP11-59H7 map 15... 46 1.3 1
(AC067817) Homo sapiens chromosome 8, clone RP11-723D22, com... 46 1.3 1
(AC025918) Homo sapiens chromosome 15 clone RP11-313H3 map 1... 46 1.3 1
(AC157273) Rhinolophus ferrumequinum clone VMRC7-55E17, WORK... 46 1.3 1
(AC157256) Rhinolophus ferrumequinum clone VMRC7-144O22, WOR... 46 1.3 1
(AC148752) Didelphis virginiana clone LB3-171C2, WORKING DRA... 46 1.3 1
(AC129426) Rattus norvegicus clone CH230-247J10, WORKING DRA... 46 1.3 1
(AC126147) Rattus norvegicus clone CH230-11D11, *** SEQUENCI... 46 1.3 1
(AC120504) Didelphis virginiana clone LB3-33C20, WORKING DRA... 46 1.3 1
(AC097740) Rattus norvegicus clone CH230-6M16, *** SEQUENCIN... 46 1.3 1
(FP102019) Brassica rapa subsp. pekinensis clone KBrB005K23,... 46 1.3 1
(CU915251) Brassica rapa subsp. pekinensis clone KBrH019G05,... 46 1.3 1
(CU855798) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.3 1
(CU656041) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.3 1
(AC090265) Homo sapiens chromosome 15 clone RP11-313H3 map 1... 46 1.3 1
(AC087462) Homo sapiens chromosome 15 clone RP11-59H7 map 15... 46 1.3 1
(CT867950) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.3 1
(CT030039) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.3 1
(BX901916) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.3 1
(AL844506) Plasmodium falciparum chromosome 7. 46 1.3 1
(AC233122) Solanum lycopersicum strain Heinz 1706 clone hba-... 46 1.3 1
(AC232859) Solanum lycopersicum chromosome 6 clone C06SLe000... 46 1.3 1
(AC217430) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 46 1.3 1
(AC216652) Solanum lycopersicum chromosome 6 clone C06HBa022... 46 1.3 1
(AC210394) Equus caballus clone CH241-245H4, WORKING DRAFT S... 46 1.3 1
(AC208770) Saimiri boliviensis boliviensis clone CH254-430O1... 46 1.3 1
(AC188496) Aotus nancymaae clone CH258-46K3, WORKING DRAFT S... 46 1.3 1
(AC175095) Bos taurus clone CH240-470B10, WORKING DRAFT SEQU... 46 1.3 1
(AC175076) Bos taurus clone CH240-215M13, WORKING DRAFT SEQU... 46 1.3 1
(AC174793) Pan troglodytes clone rp43-182h12, WORKING DRAFT ... 46 1.3 1
(AC164187) Bos taurus clone CH240-151P7, *** SEQUENCING IN P... 46 1.3 1
(AC163841) Bos taurus clone CH240-144M6, *** SEQUENCING IN P... 46 1.3 1
(AC011111) Homo sapiens clone RP11-114K8, WORKING DRAFT SEQU... 46 1.3 1
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 46 1.3 1
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 46 1.3 1
(AQ404889) HS_5044_B1_E02_SP6E RPCI-11 Human Male BAC Librar... 46 1.3 1
(FI255788) CccaBb033-K4JR CccABb Cajanus cajan genomic clone... 46 1.3 1
(FI224926) CccaBa056-B8TV CccABa Cajanus cajan genomic clone... 46 1.3 1
(FH498295) CHO_OF4366xl05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 1.3 1
(ER485494) 1093015295498 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.3 1
(EK362333) 1095469168498 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.3 1
(EJ131820) 1092343565189 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.3 1
(EI382907) POTBQ65TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.3 1
(EI369146) POTDL34TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.3 1
(ED884292) OA_CBa0039F08.r OA_CBa Oryza australiensis genomi... 46 1.3 1
(ED792214) GM_WBb0175P07.r GM_WBb Glycine max genomic clone ... 46 1.3 1
(DU928940) 355091 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.3 1
(DU845465) 28958 Tomato HindIII BAC Library Solanum lycopers... 46 1.3 1
(DU044950) 152618 Tomato HindIII BAC Library Solanum lycoper... 46 1.3 1
(DU025523) 5937 Tomato HindIII BAC Library Solanum lycopersi... 46 1.3 1
(CZ969621) 169816 Tomato MboI BAC Library Solanum lycopersic... 46 1.3 1
(CT142744) Sus scrofa genomic clone CH242-91D20, genomic sur... 46 1.3 1
(CR146011) Forward strand read from insert in 3'HPRT inserti... 46 1.3 1
(CR052750) Forward strand read from insert in 3'HPRT inserti... 46 1.3 1
(BZ032655) oek44a03.g1 B.oleracea002 Brassica oleracea genom... 46 1.3 1
(BX227409) Danio rerio genomic clone DKEY-283C13, genomic su... 46 1.3 1
(DT135430) JGI_ANNO15861.rev ANNO Pimephales promelas Whole ... 46 1.3 1
(AI967918) ME000330b.ROR Egg stage cDNA expression library i... 46 1.3 1
(CA972075) AGENCOURT_10802252 Wellcome CRC pSK egg Xenopus l... 46 1.3 1
(AI740267) MEEG04330.M1R Schistosoma mansoni, egg stage Schi... 46 1.3 1
(FG416126) 000716KUBA012277HT (KUBA) Hayward breaking bud Ac... 46 1.3 1
(FE625525) CBYY6152.g1 CBYY Panicum virgatum Kanlow crown Pa... 46 1.3 1
(FD188449) CBZA20427.b1 CBZA: Normalized channel catfish cDN... 46 1.3 1
(FD124092) CBZB22083.b1 CBZB: Normalized channel catfish cDN... 46 1.3 1
(FC796941) CBGC24498.fwd CBGC Lottia gigantea 15h 18h embryo... 46 1.3 1
(FC796940) CBGC24498.rev CBGC Lottia gigantea 15h 18h embryo... 46 1.3 1
(FC774808) CBBN8581.rev CBBN Lottia gigantea 3,4,5,6.5d Larv... 46 1.3 1
(FC773603) CBBN7785.rev CBBN Lottia gigantea 3,4,5,6.5d Larv... 46 1.3 1
(FC770837) CBBN6081.rev CBBN Lottia gigantea 3,4,5,6.5d Larv... 46 1.3 1
(FC761883) CBBN12958.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 46 1.3 1
(FC759644) CBBN11579.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 46 1.3 1
(FC752873) CBBI6653.rev CBBI Lottia gigantea 26h,37h,61h Lar... 46 1.3 1
(FC746456) CBBI2524.rev CBBI Lottia gigantea 26h,37h,61h Lar... 46 1.3 1
(FC699196) CAXX7506.rev CAXX Lottia gigantea from male gonad... 46 1.3 1
(FC699043) CAXX7411.rev CAXX Lottia gigantea from male gonad... 46 1.3 1
(FC694283) CAXX4310.rev CAXX Lottia gigantea from male gonad... 46 1.3 1
(FC689971) CAXX20982.rev CAXX Lottia gigantea from male gona... 46 1.3 1
(FC685669) CAXX18362.rev CAXX Lottia gigantea from male gona... 46 1.3 1
(FC683102) CAXX16839.rev CAXX Lottia gigantea from male gona... 46 1.3 1
(FC675893) CAXX10984.rev CAXX Lottia gigantea from male gona... 46 1.3 1
(FC668462) CAXW6405.rev CAXW Lottia gigantea from female gon... 46 1.3 1
(FC661149) CAXW1880.rev CAXW Lottia gigantea from female gon... 46 1.3 1
(FC633438) CAXT8707.rev CAXT Lottia gigantea from mantle Lot... 46 1.3 1
(FC633085) CAXT852.rev CAXT Lottia gigantea from mantle Lott... 46 1.3 1
(FC589761) CAXP567.rev CAXP Lottia gigantea from head, foot,... 46 1.3 1
(FC586747) CAXP3815.rev CAXP Lottia gigantea from head, foot... 46 1.3 1
(FC581136) CAXP14936.rev CAXP Lottia gigantea from head, foo... 46 1.3 1
(EX810543) CBNA1506.rev CBNA Phycomyces blakesleeanus NRRL15... 46 1.3 1
(EX622044) 255418029 Pea aphid whole body normalized full le... 46 1.3 1
(AL390956) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 38 1.3 4
(AC015497) Homo sapiens clone RP11-21G10, WORKING DRAFT SEQU... 40 1.3 2
(CR376801) Zebrafish DNA sequence from clone CH211-13K18 in ... 44 1.3 4
(BX511253) Zebrafish DNA sequence from clone DKEY-45M5 in li... 44 1.3 3
(AC191475) Nomascus leucogenys leucogenys clone CH271-451I2,... 36 1.3 3
(AM487145) Vitis vinifera contig VV78X227169.4, whole genome... 34 1.3 3
(AC156809) Pan troglodytes BAC clone CH251-276J13 from chrom... 40 1.4 2
(AC013479) Homo sapiens chromosome 12 clone RP11-564A7, WORK... 40 1.4 3
(AL359092) Human DNA sequence from clone RP11-57C19 on chrom... 40 1.4 2
(AC023296) Homo sapiens chromosome 8, clone RP11-564K14, com... 40 1.5 2
(CR925739) Zebrafish DNA sequence from clone DKEY-87G10 in l... 38 1.6 4
(AC154153) Colobus guereza clone CH272-227I20, WORKING DRAFT... 40 1.6 2
(CT827817) Pig DNA sequence from clone CH242-113C19 on chrom... 42 1.8 2
(FG083438) UI-FF-IH0-abe-m-01-0-UI.r1 Ceratitis capitata adu... 42 1.8 2
(CU767583) A BAC library has been constructed from PN40024 g... 42 1.8 2
(AL357893) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 1.9 2
(CR388190) Zebrafish DNA sequence from clone CH211-284E3 in ... 34 1.9 4
(CD242147) AGENCOURT_14122391 NIH_MGC_187 Homo sapiens cDNA ... 40 1.9 2
(DU610534) OO__Ba0110M14.f OO__Ba Oryza officinalis genomic ... 40 2.0 2
(CR931738) Medicago truncatula chromosome 5 clone mth2-56k10... 44 2.0 3
(AC121347) Rattus norvegicus chromosome 1 clone RP32-173O13 ... 38 2.0 6
(AG380876) Mus musculus molossinus DNA, clone:MSMg01-190J05.... 40 2.0 2
(AM436340) Vitis vinifera contig VV78X279028.29, whole genom... 42 2.1 2
(AM459034) Vitis vinifera contig VV78X044507.8, whole genome... 40 2.1 2
(AC136290) Homo sapiens chromosome 3 clone CTD-2104B13, comp... 44 2.1 3
(EA102739) Sequence 122 from patent US 7195870. 36 2.1 2
(AX323654) Sequence 142 from Patent WO0192565. 36 2.1 2
(AX277959) Sequence 122 from Patent WO0177375. 36 2.1 2
(GM996002) Sequence 142 from Patent EP2014776. 36 2.1 2
(EK284057) 1095462306044 Global-Ocean-Sampling_GS-31-01-01-1... 42 2.1 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 42 2.2 5
(FH437814) CHO_OF4999xg15r1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 2.2 2
(AC198007) Medicago truncatula chromosome 7 BAC clone mth2-5... 38 2.2 3
(AP006192) Homo sapiens genomic DNA, chromosome 3, clone:RP1... 44 2.2 3
(AU038851) Dictyostelium discoideum slug cDNA, clone SSL560. 36 2.3 2
(CU856641) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.4 4
(BX255929) Zebrafish DNA sequence from clone CH211-271P5 in ... 42 2.4 3
(AC144353) Homo sapiens chromosome 5 clone RP13-708G22, WORK... 38 2.4 3
(AC112946) Mus musculus chromosome 1 clone RP23-381A21 map 1... 32 2.4 2
(AC150109) Gallus gallus clone WAG-116B3, WORKING DRAFT SEQU... 38 2.5 3
(BX530412) Zebrafish DNA sequence from clone DKEY-42F6 in li... 34 2.5 2
(CU929613) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 2
(AC110518) Mus musculus chromosome 1, clone RP23-10P1, compl... 32 2.5 2
(AC163992) Mus musculus chromosome 1, clone RP23-193H10, com... 32 2.5 2
(CT025640) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 2.5 2
(AC215177) Zea mays chromosome 5 clone CH201-324H22; ZMMBBc0... 34 2.5 2
(AC182736) Pan troglodytes BAC clone CH251-15A9 from chromos... 34 2.5 2
(AC183607) Pan troglodytes BAC clone CH251-277D11 from chrom... 34 2.5 2
(AC069041) Homo sapiens chromosome 1 clone RP11-307H8 map 1,... 34 2.5 2
(AL404589) T7 end of clone XAT0AA001C03 of library XAT0AA fr... 38 2.5 2
(GC698488) Sequence 13733 from patent US 6812339. 34 2.5 2
(AC143335) Homo sapiens chromosome 5 clone RP13-861O3, WORKI... 38 2.5 3
(DQ341263) Homo sapiens Fanconi anemia, complementation grou... 44 2.5 2
(AL450063) Human DNA sequence from clone RP11-82H13 on chrom... 34 2.6 2
(AC092055) Homo sapiens chromosome 3 clone RP11-437K13, comp... 44 2.6 3
(CT583681) Zebrafish DNA sequence from clone CH211-193B5 in ... 34 2.6 4
(DQ667174) Homo sapiens protein kinase, cAMP-dependent, cata... 34 2.6 2
(AL450308) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 2.6 2
(AC226509) Solanum lycopersicum chromosome 2 clone C02HBa014... 32 2.6 2
(AC026254) Homo sapiens chromosome 17, clone RP11-173M1, com... 44 2.6 3
(AE001369) Plasmodium falciparum 3D7 chromosome 2 section 6 ... 34 2.6 4
(CC292808) CH261-62B6_RM1.1 CH261 Gallus gallus genomic clon... 36 2.6 2
(AC107373) Homo sapiens chromosome 8, clone CTD-2168K21, com... 44 2.7 2
(AC007999) Homo sapiens 3q25-26 BAC CTB-177N7 (California In... 44 2.7 2
(AC210643) Macaca mulatta BAC CH250-453G15 (Children's Hosp... 40 2.7 3
(AL404590) T3 end of clone XAT0AA001C03 of library XAT0AA fr... 38 2.7 2
(AC108080) Homo sapiens chromosome 5 clone CTC-315N8, comple... 38 2.8 3
(AC121841) Mus musculus BAC clone RP24-80D5 from chromosome ... 34 2.8 5
(AE001394) Plasmodium falciparum 3D7 chromosome 2 section 31... 34 2.9 2
(CU655918) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.9 3
(AL391355) Human DNA sequence from clone RP11-394G10 on chro... 38 2.9 3
(BX324116) Zebrafish DNA sequence from clone CH211-114G7 in ... 44 3.0 3
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 3.1 6
(CU463034) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 3.3 2
(EU785978) Apis mellifera haplotype O5'' tRNA-Leu gene, part... 32 3.3 2
(EA680409) Sequence 59288 from patent US 7365185. 34 3.3 5
(AF176680) Homo sapiens chromosome 8 clone CTD-2168K21 map 8... 44 3.3 2
(EU785977) Apis mellifera haplotype O5' tRNA-Leu gene, parti... 32 3.3 2
(AP006209) Homo sapiens genomic DNA, chromosome 9, clone:RP1... 36 3.3 4
(EU785975) Apis mellifera haplotype O5b tRNA-Leu gene, parti... 32 3.3 2
(EU785976) Apis mellifera haplotype O5c tRNA-Leu gene, parti... 32 3.3 2
(BZ987896) PUFII85TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 3.3 2
(AC026556) Homo sapiens chromosome 4 clone RP11-731D1 map 4,... 38 3.4 3
(EU785972) Apis mellifera haplotype O4a tRNA-Leu gene, parti... 32 3.4 2
(AC025019) Homo sapiens clone RP11-60L2, WORKING DRAFT SEQUE... 42 3.4 3
(BZ685854) PUBEQ76TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 3.4 2
(CL368311) RPCI44_288J18.r RPCI-44 Sus scrofa genomic clone ... 34 3.5 2
(AC022522) Arabidopsis thaliana chromosome I BAC T28K15 geno... 38 3.5 3
(AC135210) Danio rerio strain Tue clone CH211-172N10, WORKIN... 34 3.6 5
(BX465198) Zebrafish DNA sequence from clone DKEYP-84E12 in ... 32 3.6 7
(AC023634) Homo sapiens chromosome 11 clone RP11-133I12 map ... 40 3.6 3
(BD452717) Diagnosis of Diseases Associated with tumor suppr... 36 3.6 2
(AX251196) Sequence 164 from Patent WO0168912. 36 3.6 2
(GC699748) Sequence 14993 from patent US 6812339. 36 3.6 4
(AL035476) Plasmodium falciparum MAL4P3. 44 3.7 6
(AC105359) Homo sapiens chromosome 8, clone XX-224N20, compl... 44 3.8 2
(DW876690) MSAM069645_3298_3319 LCM-dissected maize shoot ap... 34 3.9 2
(AC189676) Trichinella spiralis BAC clone TS195-2H12 from ch... 40 3.9 3
(AP000493) Homo sapiens genomic DNA, chromosome 3p21.3, clon... 44 4.0 3
(DD010736) Diagnosis of known genetic Parameters within the ... 44 4.1 4
(AC225682) Ateles geoffroyi clone UC1-121A19, WORKING DRAFT ... 36 4.2 3
(AC068887) Homo sapiens chromosome 12 clone RP11-392G11, WOR... 40 4.2 4
(CT025902) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 4.2 3
(CT027760) Zebrafish DNA sequence from clone CH211-213N8 in ... 38 4.3 4
(AC139758) Mus musculus BAC clone RP23-367E7 from chromosome... 40 4.4 3
(AC090615) Homo sapiens chromosome 17, clone RP11-578C11, co... 44 4.4 2
(AC213757) Canis lupus familiaris clone XX-153A11, *** SEQUE... 36 4.4 5
(AC021976) Homo sapiens chromosome 17 clone RP11-578C11, WOR... 44 4.4 2
(AL645949) Human DNA sequence from clone RP11-357G3 on chrom... 44 4.4 2
(AC073948) Homo sapiens chromosome 18 clone RP11-21G15 map 1... 40 4.5 2
(CU633927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.6 3
(AC069440) Homo sapiens chromosome 3 clone RP11-1022P15, ***... 44 4.6 2
(DB767229) Apis mellifera head cDNA, RIKEN full-length enric... 40 4.7 2
(AC195654) MACACA MULATTA BAC clone CH250-359J8 from chromos... 40 4.7 2
(CE422093) tigr-gss-dog-17000362753792 Dog Library Canis lup... 38 4.8 2
(AC034221) Homo sapiens chromosome 5 clone CTD-2057C8, WORKI... 36 4.9 3
(AC034152) Homo sapiens chromosome 3 clone RP11-175J3, WORKI... 40 5.0 2
(FP016060) Zebrafish DNA sequence from clone CH1073-410J4 in... 44 5.0 1
(EU481821) Salmo salar physical map contig 483, genomic sequ... 44 5.0 1
(DQ221252) Tetraodon nigroviridis voltage-gated sodium chann... 44 5.0 1
(CU929111) Zebrafish DNA sequence from clone ZFOS-1481C12 in... 44 5.0 1
(CU928120) Zebrafish DNA sequence from clone CH1073-403M23 i... 44 5.0 1
(CU914786) Zebrafish DNA sequence from clone CH1073-237F15 i... 44 5.0 1
(CU655838) Zebrafish DNA sequence from clone CH1073-226M24 i... 44 5.0 1
(CU651669) Zebrafish DNA sequence from clone CH1073-266P11 C... 44 5.0 1
(CU570886) Zebrafish DNA sequence from clone CH73-207F10 in ... 44 5.0 1
(CU468139) Zebrafish DNA sequence from clone CH73-224F17 in ... 44 5.0 1
(CU462873) Zebrafish DNA sequence from clone CH73-215F7 in l... 44 5.0 1
(CU104696) Zebrafish DNA sequence from clone CH211-218M3 in ... 44 5.0 1
(CU074338) Zebrafish DNA sequence from clone CH73-258M18 in ... 44 5.0 1
(CT573499) Zebrafish DNA sequence from clone DKEYP-106G6 in ... 44 5.0 1
(CT573198) Zebrafish DNA sequence from clone CH211-174N22 in... 44 5.0 1
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li... 44 5.0 1
(CR855881) Zebrafish DNA sequence from clone DKEY-232G12 in ... 44 5.0 1
(CR854988) Zebrafish DNA sequence from clone DKEY-147M6 in l... 44 5.0 1
(CR848711) Zebrafish DNA sequence from clone CH211-226K23 in... 44 5.0 1
(CR847945) Zebrafish DNA sequence from clone DKEY-52L1. 44 5.0 1
(CR847572) Zebrafish DNA sequence from clone DKEY-65P19 in l... 44 5.0 1
(CR847533) Zebrafish DNA sequence from clone DKEY-15G24 in l... 44 5.0 1
(CR788297) Zebrafish DNA sequence from clone DKEY-217L24 in ... 44 5.0 1
(CR788258) Zebrafish DNA sequence from clone DKEY-182D21 in ... 44 5.0 1
(CR753869) Zebrafish DNA sequence from clone DKEY-286N21 in ... 44 5.0 1
(CR555299) Zebrafish DNA sequence from clone DKEY-158B1 in l... 44 5.0 1
(CR450733) Zebrafish DNA sequence from clone DKEYP-86E4 in l... 44 5.0 1
(CR388144) Zebrafish DNA sequence from clone DKEY-21I17 in l... 44 5.0 1
(CR381601) Zebrafish DNA sequence from clone DKEY-194G4 in l... 44 5.0 1
(CR356242) Zebrafish DNA sequence from clone DKEY-263D4 in l... 44 5.0 1
(CR352242) Zebrafish DNA sequence from clone CH211-218G4 in ... 44 5.0 1
(CR318627) Zebrafish DNA sequence from clone DKEYP-97F4 in l... 44 5.0 1
(CR318626) Zebrafish DNA sequence from clone DKEY-29L7 in li... 44 5.0 1
(CR293517) Zebrafish DNA sequence from clone CH211-203D21 in... 44 5.0 1
(BX936341) Zebrafish DNA sequence from clone CH211-149C18 in... 44 5.0 1
(BX927363) Zebrafish DNA sequence from clone DKEYP-30E7 in l... 44 5.0 1
(BX640583) Zebrafish DNA sequence from clone CH211-186C22 in... 44 5.0 1
(BX571786) Zebrafish DNA sequence from clone DKEY-250I3 in l... 44 5.0 1
(BX571728) Zebrafish DNA sequence from clone DKEY-210O7 in l... 44 5.0 1
(BX547997) Zebrafish DNA sequence from clone CH211-198F16 in... 44 5.0 1
(BX530070) Zebrafish DNA sequence from clone DKEY-245C12 in ... 44 5.0 1
(BX511259) Zebrafish DNA sequence from clone CH211-125E6 in ... 44 5.0 1
(BX511083) Zebrafish DNA sequence from clone CH211-195F22 in... 44 5.0 1
(BX510356) Zebrafish DNA sequence from clone DKEY-6I22 in li... 44 5.0 1
(BX510315) Zebrafish DNA sequence from clone CH211-59I18 in ... 44 5.0 1
(BX470211) Zebrafish DNA sequence from clone DKEY-165A24 in ... 44 5.0 1
(BX469931) Zebrafish DNA sequence from clone DKEY-108D22 in ... 44 5.0 1
(BX323870) Zebrafish DNA sequence from clone DKEYP-70G1 in l... 44 5.0 1
(BX323563) Zebrafish DNA sequence from clone DKEY-20J10 in l... 44 5.0 1
(BX276181) Zebrafish DNA sequence from clone CH211-247O20 in... 44 5.0 1
(BX248503) Zebrafish DNA sequence from clone CH211-232M7 in ... 44 5.0 1
(BX248108) Zebrafish DNA sequence from clone CH211-221P4. 44 5.0 1
(AL929053) Zebrafish DNA sequence from clone DKEY-21N12 in l... 44 5.0 1
(AL928892) Zebrafish DNA sequence from clone DKEY-216E6. 44 5.0 1
(AL928830) Zebrafish DNA sequence from clone CH211-119E16. 44 5.0 1
(CU678197) Synthetic construct Homo sapiens gateway clone IM... 44 5.0 1
(GF034523) pRRL2:Newb:20080411:414598 USMARC Pig Breed SNP D... 44 5.0 1
(BV999212) pRRL2:Newb:20080411:379549 USMARC Pig Breed SNP D... 44 5.0 1
(BV672232) S217P60936RF5.T0 Noemie Pan troglodytes troglodyt... 44 5.0 1
(BV642983) S216P6292FG6.T0 Masuku Pan troglodytes troglodyte... 44 5.0 1
(BV590430) G591P641589FC9.T0 Clint Pan troglodytes verus STS... 44 5.0 1
(BV588667) G591P636588FG4.T0 Clint Pan troglodytes verus STS... 44 5.0 1
(BV583224) G591P627329RC1.T0 Clint Pan troglodytes verus STS... 44 5.0 1
(BV568477) snx42b01.b1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV562465) qwh25c03.g1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV561668) qhe51g09.b1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV557918) qmc33a05.b1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV550761) S216P61837RF12.T0 Masuku Pan troglodytes troglody... 44 5.0 1
(BV501108) S222P61992FA2.T0 Karlien Pan troglodytes verus ST... 44 5.0 1
(BV470569) G591P624056FA8.T0 Clint Pan troglodytes verus STS... 44 5.0 1
(BV469761) G591P619504FB9.T0 Clint Pan troglodytes verus STS... 44 5.0 1
(BV464194) sob53c06.b1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV457160) qsz94f02.g1 Clint Pan troglodytes verus STS genom... 44 5.0 1
(BV346184) S230P645FH5.T0 Rottweiler Canis familiaris STS ge... 44 5.0 1
(BV267540) S235P6407RB8.T0 ItalianGreyhound Canis familiaris... 44 5.0 1
(BV187372) sqnm154083 Human DNA (Sequenom) Homo sapiens STS ... 44 5.0 1
(BV018193) S212P60206FD8.T0 CZECHII/Ei Mus musculus STS geno... 44 5.0 1
(M98502) Mus musculus protein encoding twelve zinc finger pr... 44 5.0 1
(BC092398) Mus musculus zinc finger protein 46, mRNA (cDNA c... 44 5.0 1
(AL935264) Mouse DNA sequence from clone RP23-118A9 on chrom... 44 5.0 1
(AL845158) Mouse DNA sequence from clone RP23-147E6 on chrom... 44 5.0 1
(AL671963) Mouse DNA sequence from clone RP23-35L3 on chromo... 44 5.0 1
(AK173240) Mus musculus mRNA for mKIAA1710 protein. 44 5.0 1
(AC157561) Mus musculus chromosome 7, clone RP23-356A20, com... 44 5.0 1
(AC157519) Mus musculus BAC clone RP23-202O17 from chromosom... 44 5.0 1
(AC153418) Mus musculus BAC clone RP23-437E18 from 17, compl... 44 5.0 1
(AC140053) Mus musculus BAC clone RP23-258J2 from chromosome... 44 5.0 1
(AC134457) Mus musculus BAC clone RP23-340O18 from 10, compl... 44 5.0 1
(AC126246) Mus musculus BAC clone RP24-354D18 from chromosom... 44 5.0 1
(AC124975) Mus musculus chromosome 1, clone RP23-262M12, com... 44 5.0 1
(AC122837) Mus musculus BAC clone RP23-189N3 from 16, comple... 44 5.0 1
(AC121946) Mus musculus BAC clone RP24-212F15 from chromosom... 44 5.0 1
(AC121869) Mus musculus BAC clone RP24-121C10 from 17, compl... 44 5.0 1
(AC116419) Mus musculus chromosome 1, clone RP24-89C10, comp... 44 5.0 1
(AC113598) Mus musculus chromosome 14, clone RP23-476N23, co... 44 5.0 1
(AC074046) Mus musculus 5 BAC RP23-440C1 (Roswell Park Cance... 44 5.0 1
(CU104655) Gorilla DNA sequence from clone CH255-191J6. 44 5.0 1
(BS000596) Pan troglodytes chromosome Y clone:PTB-130H13, co... 44 5.0 1
(BS000131) Pan troglodytes chromosome 22 clone:PTB-315N10, m... 44 5.0 1
(BS000047) Pan troglodytes chromosome 22 clone:PTB-109H19, m... 44 5.0 1
(AC211007) Pan troglodytes BAC clone CH251-679G3 from chromo... 44 5.0 1
(AC208108) Pongo abelii BAC clone CH276-446E3 from chromosom... 44 5.0 1
(AC206354) Pongo abelii BAC clone CH276-263N15 from chromoso... 44 5.0 1
(AC206011) Pongo abelii BAC clone CH276-113E9 from chromosom... 44 5.0 1
(AC201840) Pongo abelii BAC clone CH276-344I3 from chromosom... 44 5.0 1
(AC200908) Pan troglodytes BAC clone CH251-681K10 from chrom... 44 5.0 1
(AC200707) Pan troglodytes BAC clone CH251-387E10 from chrom... 44 5.0 1
(AC200590) Rhesus Macaque BAC CH250-308E4 () complete seque... 44 5.0 1
(AC198790) Pongo abelii BAC clone CH276-194H12 from chromoso... 44 5.0 1
(AC198148) Nomascus leucogenys BAC clone CH271-325B21 from c... 44 5.0 1
(AC197941) MACACA MULATTA BAC clone CH250-29F9 from chromoso... 44 5.0 1
(AC192141) Pan troglodytes BAC clone CH251-584D4 from chromo... 44 5.0 1
(AC191985) Rhesus Macaque BAC CH250-216D12 () complete sequ... 44 5.0 1
(AC191984) Rhesus Macaque BAC CH250-122A16 () complete sequ... 44 5.0 1
(AC191983) Rhesus Macaque BAC CH250-64G9 () complete sequence. 44 5.0 1
(AC188168) Pan troglodytes BAC clone CH251-165P4 from chromo... 44 5.0 1
(AC187615) Pan troglodytes BAC clone CH251-597A3 from chromo... 44 5.0 1
(AC183685) Pan troglodytes BAC clone CH251-243F7 from chromo... 44 5.0 1
(AC183681) Pan troglodytes BAC clone CH251-278I15 from chrom... 44 5.0 1
(AC183619) Pan troglodytes BAC clone CH251-66M12 from chromo... 44 5.0 1
(AC183100) Pan troglodytes BAC clone CH251-736D14 from chrom... 44 5.0 1
(AC151479) Pan troglodytes BAC clone CH251-656P8 from chromo... 44 5.0 1
(AC145985) Pan troglodytes BAC clone RP43-17I24 from chromos... 44 5.0 1
(AC144026) Rhesus Macaque BAC CH250-271J18 () complete sequ... 44 5.0 1
(AC120780) Pan troglodytes clone rp43-22b16, complete sequence. 44 5.0 1
(AC093133) Papio anubis clone RP41-57F8, complete sequence. 44 5.0 1
(AC091296) Pan troglodytes clone RP43-109G19, complete seque... 44 5.0 1
(CU329671) Schizosaccharomyces pombe chromosome II. 44 5.0 1
(CR932963) Medicago truncatula chromosome 5 clone mth2-115p2... 44 5.0 1
(AY224188) Medicago truncatula adenosylhomocysteinase (AHC1)... 44 5.0 1
(AP009296) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 5.0 1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 44 5.0 1
(AP006696) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 5.0 1
(AP004761) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.0 1
(AP004708) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.0 1
(AM488951) Vitis vinifera contig VV78X152765.7, whole genome... 44 5.0 1
(AM481229) Vitis vinifera, whole genome shotgun sequence, co... 44 5.0 1
(AM480164) Vitis vinifera contig VV78X019418.4, whole genome... 44 5.0 1
(AM478155) Vitis vinifera contig VV78X028183.5, whole genome... 44 5.0 1
(AM476260) Vitis vinifera contig VV78X136703.19, whole genom... 44 5.0 1
(AM470134) Vitis vinifera contig VV78X054700.4, whole genome... 44 5.0 1
(AM469951) Vitis vinifera contig VV78X132677.4, whole genome... 44 5.0 1
(AM467246) Vitis vinifera contig VV78X217358.6, whole genome... 44 5.0 1
(AM467168) Vitis vinifera contig VV78X112775.3, whole genome... 44 5.0 1
(AM466727) Vitis vinifera contig VV78X122594.5, whole genome... 44 5.0 1
(AM465003) Vitis vinifera contig VV78X194213.17, whole genom... 44 5.0 1
(AM459322) Vitis vinifera contig VV78X182882.2, whole genome... 44 5.0 1
(AM459082) Vitis vinifera contig VV78X141852.10, whole genom... 44 5.0 1
(AM457374) Vitis vinifera contig VV78X136717.12, whole genom... 44 5.0 1
(AM455921) Vitis vinifera contig VV78X008883.5, whole genome... 44 5.0 1
(AM444178) Vitis vinifera contig VV78X065047.7, whole genome... 44 5.0 1
(AM440420) Vitis vinifera, whole genome shotgun sequence, co... 44 5.0 1
(AM437459) Vitis vinifera contig VV78X058338.2, whole genome... 44 5.0 1
(AM434804) Vitis vinifera contig VV78X033615.9, whole genome... 44 5.0 1
(AM430787) Vitis vinifera contig VV78X034512.17, whole genom... 44 5.0 1
(AM429680) Vitis vinifera contig VV78X175305.5, whole genome... 44 5.0 1
(AM429634) Vitis vinifera contig VV78X024780.5, whole genome... 44 5.0 1
(AC225546) Medicago truncatula clone mth2-78i17, complete se... 44 5.0 1
(AC216671) Populus trichocarpa clone POP018-E21, complete se... 44 5.0 1
(AC209107) Populus trichocarpa clone POP088-K16, complete se... 44 5.0 1
(AC195115) Phycomyces blakesleeanus clone JGIBHUS-9I4, compl... 44 5.0 1
(AC189192) Brassica rapa subsp. pekinensis clone KBrB002P20,... 44 5.0 1
(AC157985) Medicago truncatula clone mth2-150l20, complete s... 44 5.0 1

>(C25615) Dictyostelium discoideum slug cDNA, clone SSA279.
Length = 416

Score = 458 bits (231), Expect(3) = e-168
Identities = 231/231 (100%)
Strand = Plus / Plus


Query: 58 gaaaaattcccaaaattagcatttttaaacaatgtcacaaatttagcaccaatgatgaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaaaaattcccaaaattagcatttttaaacaatgtcacaaatttagcaccaatgatgaaa 117


Query: 118 tggtcactttcaattgtaccaattacacaaattttttcaggaactaaattaccagaaaat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tggtcactttcaattgtaccaattacacaaattttttcaggaactaaattaccagaaaat 177


Query: 178 atagatgtttatcaagcatcatcattatgtgctactggttcaatttggacttattatgcc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atagatgtttatcaagcatcatcattatgtgctactggttcaatttggacttattatgcc 237


Query: 238 acattaatttccccacaaaatacaggtacaagaatgttagcagcttgtaat 288
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acattaatttccccacaaaatacaggtacaagaatgttagcagcttgtaat 288

Score = 99.6 bits (50), Expect(3) = e-168
Identities = 50/50 (100%)
Strand = Plus / Plus


Query: 1 aataaatatacaggtaatcaaattgtttttagtaataaatatgcaaccac 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aataaatatacaggtaatcaaattgtttttagtaataaatatgcaaccac 50

Score = 87.7 bits (44), Expect(3) = e-168
Identities = 44/44 (100%)
Strand = Plus / Plus


Query: 290 cagcaatggctgcgtgtcatggttataatatttatcgtagaacg 333
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagcaatggctgcgtgtcatggttataatatttatcgtagaacg 332

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 580,623,718
Number of extensions: 39257996
Number of successful extensions: 5116105
Number of sequences better than 10.0: 1166
Length of query: 500
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 477
Effective length of database: 99,442,330,388
Effective search space: 47433991595076
Effective search space used: 47433991595076
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U03308-1 (Contig-U03308-1Q) /CSM_Contig/Contig-U03308-1Q.Seq.d
(500 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC159429_27(AC159429|pid:none) Trypanosoma brucei chromosome 7 c... 102 4e-21
AM494951_166(AM494951|pid:none) Leishmania braziliensis chromoso... 94 1e-18
AM502232_156(AM502232|pid:none) Leishmania infantum chromosome 14. 90 3e-17
CT005253_151(CT005253|pid:none) Leishmania major strain Friedlin... 89 4e-17
AE014134_2891(AE014134|pid:none) Drosophila melanogaster chromos... 45 0.001
(Q09896) RecName: Full=UPF0041 protein C24B11.09; &CU329670_87(... 45 0.001
AK341341_1(AK341341|pid:none) Acyrthosiphon pisum ACYPI005090 mR... 43 0.005
AY223284_1(AY223284|pid:none) Schistosoma japonicum SJCHGC06193 ... 43 0.005
AL161539_28(AL161539|pid:none) Arabidopsis thaliana DNA chromoso... 41 0.014
AM270279_14(AM270279|pid:none) Aspergillus niger contig An12c023... 41 0.014
EU692931_1(EU692931|pid:none) Caenorhabditis brenneri clone 15BY... 41 0.018
DQ381235_1(DQ381235|pid:none) Ictalurus punctatus clone SNND06R ... 40 0.024
AK121224_1(AK121224|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.040
AK062392_1(AK062392|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.040
AK317025_1(AK317025|pid:none) Arabidopsis thaliana AT4G05590 mRN... 40 0.040
AF542189_1(AF542189|pid:none) Triticum aestivum probable light-i... 40 0.040
AY087427_1(AY087427|pid:none) Arabidopsis thaliana clone 35323 m... 39 0.053
AM920437_2294(AM920437|pid:none) Penicillium chrysogenum Wiscons... 39 0.053
(O01578) RecName: Full=UPF0041 protein F53F10.3; &U97191_3(U971... 39 0.053
T25797(T25797)hypothetical protein F53F10.3 - Caenorhabditis ele... 39 0.053
EU973398_1(EU973398|pid:none) Zea mays clone 398084 brain protei... 39 0.069
BC081510_1(BC081510|pid:none) Danio rerio zgc:103678, mRNA (cDNA... 39 0.069
AF325008_1(AF325008|pid:none) Arabidopsis thaliana AT4g22310 (AT... 39 0.069
BT075693_1(BT075693|pid:none) Osmerus mordax clone omor-eva-511-... 38 0.12
BC071315_1(BC071315|pid:none) Danio rerio brain protein 44, mRNA... 37 0.20
AM910994_348(AM910994|pid:none) Plasmodium knowlesi strain H chr... 37 0.20
BC044023_1(BC044023|pid:none) Xenopus laevis hypothetical protei... 37 0.20
BT081583_1(BT081583|pid:none) Rana catesbeiana clone rcat-evr-51... 37 0.20
BT056454_1(BT056454|pid:none) Salmo salar clone ssal-evd-504-124... 37 0.26
(O95563) RecName: Full=Brain protein 44; &AK290126_1(AK290126|p... 37 0.34
BT083065_1(BT083065|pid:none) Anoplopoma fimbria clone afim-evh-... 37 0.34
Z97876_4(Z97876|pid:none) Human DNA sequence from clone RP1-295C... 37 0.34
(P38718) RecName: Full=Brain protein 44; AltName: Full=Protein 0... 37 0.34
FB746689_1(FB746689|pid:none) Sequence 156 from Patent EP1903111. 37 0.34
(Q9D023) RecName: Full=Brain protein 44; &AK002233_1(AK002233|p... 37 0.34
AM454689_3(AM454689|pid:none) Vitis vinifera contig VV78X170507.... 36 0.45
FN392321_1112(FN392321|pid:none) Pichia pastoris GS115 chromosom... 36 0.45
AE017341_87(AE017341|pid:none) Cryptococcus neoformans var. neof... 36 0.45
CP001574_543(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 36 0.58
AE014297_998(AE014297|pid:none) Drosophila melanogaster chromoso... 35 0.76
AE014297_1000(AE014297|pid:none) Drosophila melanogaster chromos... 35 0.99
CR380955_85(CR380955|pid:none) Candida glabrata strain CBS138 ch... 34 2.2
CP000153_710(CP000153|pid:none) Sulfurimonas denitrificans DSM 1... 34 2.2
CR382123_363(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 33 2.9
AC148915_6(AC148915|pid:none) Medicago truncatula chromosome 2 c... 33 4.9
AD1787(AD1787) lysine decarboxylase homolog lin2842 [imported] -... 33 4.9
BT049699_1(BT049699|pid:none) Salmo salar clone ssal-evd-508-344... 32 8.4
BX950851_1940(BX950851|pid:none) Erwinia carotovora subsp. atros... 32 8.4

>AC159429_27(AC159429|pid:none) Trypanosoma brucei chromosome 7
clone RPCI93-28B13, complete sequence.
Length = 134

Score = 102 bits (255), Expect = 4e-21
Identities = 53/119 (44%), Positives = 71/119 (59%)
Frame = +1

Query: 1 NKYTGNQIVFSNKYATTFFEKFPKLAFLNNVTNLAPMMKWSLSIVPITQIFSGTKLPENI 180
+KY GN VF +EK+ +A+LN+V NLAP KW LSIVP+ IF G E I
Sbjct: 18 HKYVGNGRVFQ---CLKSYEKYGVVAYLNSVYNLAPSFKWMLSIVPLYGIFVGNPPVEKI 74

Query: 181 DVYQASSLCATGSIWTYYATLISPQNTGTRMLXXXXXXXXXXHGYNIYRRTKWEKSQII 357
DV +++LC TG +W YA LI PQN+G+R L HGYNIYR +++S+ +
Sbjct: 75 DVNSSAALCTTGLLWFVYALLIQPQNSGSRSLAAVNVCLAAVHGYNIYRAMSYKRSKAL 133

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 685,433,747
Number of extensions: 12011762
Number of successful extensions: 23962
Number of sequences better than 10.0: 48
Number of HSP's gapped: 23957
Number of HSP's successfully gapped: 48
Length of query: 166
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 47
Effective length of database: 672,240,369
Effective search space: 31595297343
Effective search space used: 31595297343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.79 gvh: 0.50 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U03308-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1