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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03307-1
Contig ID Contig-U03307-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03307-1 (Contig-U03307-1Q) /CSM_Contig/Contig-U03307-1Q.Seq.d
GCTTTTTTTTTTTTTTTTTTTTTTTTTGAATTATATTATTTATTTAATCT
ATTTGTATTAAATGAGTTTAAACTTAATAAAATAAATTGGAAAAAAAAAA
AATTATTTAAAACTTTATATTACATTTTTAAAGAAGTTTAGGCCTTTTTA
TTCATACCCAAGTAAACATTAGCTGTGGATTTACCAACTGATTCTGAGTC
ATTTTCATTGAACAAATGATATCTAATGAG
Gap no gap
Contig length 230
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 806778
End point 806547
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 1
Link to clone list U03307
List of clone(s) 

est1=FC-IC0122F,1,231
Translated Amino Acid sequence 
AFFFFFFFFELYYLFNLFVLNEFKLNKINWKKKKLFKTLYYIFKEV*aflfipk*tlavd
lptdsesfslnk*ylm
Translated Amino Acid sequence (All Frames) 
Frame A:
AFFFFFFFFELYYLFNLFVLNEFKLNKINWKKKKLFKTLYYIFKEV*aflfipk*tlavd
lptdsesfslnk*ylm


Frame B:
lffffffflnyiiyliyly*mslnlik*igkkknylklyitflkkfrpfysypskh*lwi
yqlilshfh*tndi**


Frame C:
ffffffff*iilfi*sicik*v*t**nklekkkii*nfilhf*rslglfihtqvniscgf
tn*f*vifieqmisne
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03307-1 (Contig-U03307-1Q)
/CSM_Contig/Contig-U03307-1Q.Seq.d
         (230 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03307-1 (Contig-U03307-1Q) /CSM_Contig/Conti...   331  2e-91
Contig-U13095-1 (Contig-U13095-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U09427-1 (Contig-U09427-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U12473-1 (Contig-U12473-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U08420-1 (Contig-U08420-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U08163-1 (Contig-U08163-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U06997-1 (Contig-U06997-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U06632-1 (Contig-U06632-1Q) /CSM_Contig/Conti...    34  0.061
Contig-U01842-1 (Contig-U01842-1Q) /CSM_Contig/Conti...    34  0.061

>Contig-U03307-1 (Contig-U03307-1Q) /CSM_Contig/Contig-U03307-1Q.Seq.d
          Length = 230

 Score =  331 bits (167), Expect = 2e-91
 Identities = 191/203 (94%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaattatattatttatttaatctatttgtattaaatgagtttaaacttaataaaataaat 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28  gaattatattatttatttaatctatttgtattaaatgagtttaaacttaataaaataaat 87

                                                                       
Query: 88  tggnnnnnnnnnnnnttatttaaaactttatattacatttttaaagaagtttaggccttt 147
           |||            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tggaaaaaaaaaaaattatttaaaactttatattacatttttaaagaagtttaggccttt 147

                                                                       
Query: 148 ttattcatacccaagtaaacattagctgtggatttaccaactgattctgagtcattttca 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ttattcatacccaagtaaacattagctgtggatttaccaactgattctgagtcattttca 207

                                  
Query: 208 ttgaacaaatgatatctaatgag 230
           |||||||||||||||||||||||
Sbjct: 208 ttgaacaaatgatatctaatgag 230


>Contig-U13095-1 (Contig-U13095-1Q) /CSM_Contig/Contig-U13095-1Q.Seq.d
          Length = 193

 Score = 38.2 bits (19), Expect = 0.004
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 30 attatattatttatttaat 48
          |||||||||||||||||||
Sbjct: 46 attatattatttatttaat 28


>Contig-U09427-1 (Contig-U09427-1Q) /CSM_Contig/Contig-U09427-1Q.Seq.d
          Length = 1170

 Score = 38.2 bits (19), Expect = 0.004
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 36  ttatttatttaatctatttgtat 58
           ||||||||||||| |||||||||
Sbjct: 173 ttatttatttaatttatttgtat 151


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9314
Number of Sequences: 6905
Number of extensions: 9314
Number of successful extensions: 2635
Number of sequences better than 10.0: 250
length of query: 230
length of database: 5,674,871
effective HSP length: 15
effective length of query: 215
effective length of database: 5,571,296
effective search space: 1197828640
effective search space used: 1197828640
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.30
Homology vs DNA 
Query= Contig-U03307-1 (Contig-U03307-1Q) /CSM_Contig/Contig-U03307-1Q.Seq.d
         (230 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU271356) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   254   5e-95  2
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    32   0.082  10
(BX248331) Zebrafish DNA sequence from clone CH211-236D3 in ...    38   0.085  2
(CG698687) ZMMBBc0113E17r ZMMBBc (EcoRI) Zea mays subsp. may...    34   0.13   3
(CP001246) Borrelia afzelii ACA-1 plasmid lp38, complete seq...    36   0.24   3
(BX247879) Zebrafish DNA sequence from clone CH211-195N15.         36   0.31   2
(CG156056) PUFRC45TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   0.50   2
(EH264658) JGI_CZAA2657.fwd CZAA Phakopsora pachyrhizi TW72-...    30   0.53   3
(BX897741) Zebrafish DNA sequence from clone DKEY-273O13 in ...    46   0.55   1
(AC123022) Homo sapiens 3 BAC RP11-36C14 (Roswell Park Cance...    46   0.55   1
(AC108740) Homo sapiens 3 BAC RP11-481N16 (Roswell Park Canc...    46   0.55   1
(AC060778) Homo sapiens chromosome 3 clone RP11-82O23 map 3,...    46   0.55   1
(BX470231) Zebrafish DNA sequence from clone CH211-63H10 in ...    32   0.67   7
(AC149577) Medicago truncatula chromosome 2 BAC clone mth2-1...    44   0.68   3
(FD091433) CBFH29985.g1 CBFH: Normalized blue catfish cDNA l...    42   0.91   2
(CR753886) Zebrafish DNA sequence from clone DKEY-189E1 in l...    38   0.95   5
(CP000053) Rickettsia felis URRWXCal2, complete genome.            34   1.0    2
(AM052688) Entodinium caudatum EST, clone Entodinium1111G.         36   1.0    2
(CU469042) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.1    9
(AC186799) Zea mays chromosome 6 clone CH201-47K16; ZMMBBc00...    34   1.1    2
(AC191631) Zea mays chromosome 5 clone CH201-52D7; ZMMBBc005...    34   1.1    2
(AC203245) Zea mays chromosome 5 clone CH201-36H7; ZMMBBc003...    34   1.1    2
(GC700195) Sequence 15440 from patent US 6812339.                  34   1.2    6
(AL833599) Homo sapiens mRNA; cDNA DKFZp686E2367 (from clone...    42   1.4    3
(AM466230) Vitis vinifera contig VV78X051808.4, whole genome...    36   1.4    2
(DX559510) GH_MBb0042H07r GH_MBb Gossypium hirsutum genomic ...    36   1.4    3
(DX541286) GH_MBb0030G13r GH_MBb Gossypium hirsutum genomic ...    36   1.5    2
(DX847789) ZMMBLe0019L05.f ZMMBLe Zea mays genomic clone ZMM...    34   1.5    2
(CL571816) OB__Ba0013D01.r OB__Ba Oryza brachyantha genomic ...    34   1.5    2
(CT509899) A BAC library has been constructed from cultivar ...    36   1.5    2
(DH303014) Oryzias latipes Fosmid clone:GOLWFno652_m05, forw...    36   1.5    2
(AM454744) Vitis vinifera contig VV78X022172.6, whole genome...    42   1.6    3
(BX649142) Homo sapiens mRNA; cDNA DKFZp686B19165 (from clon...    42   1.6    3
(CK549631) swkz0_006531.z1 swk Bombyx mori cDNA, mRNA sequence.    32   1.7    3
(AC146852) Medicago truncatula clone mth2-58k21, complete se...    32   1.7    6
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    34   1.9    5
(DY305376) KN0AAH3CF12RM1 PhII-III-Vesicles1 Citrus clementi...    42   1.9    2
(DY305312) KN0AAH3BD08RM1 PhII-III-Vesicles1 Citrus clementi...    42   1.9    2
(EJ659900) 1092955020150 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.0    3
(CR847534) Zebrafish DNA sequence from clone DKEY-27E20 in l...    44   2.2    1
(CR388096) Zebrafish DNA sequence from clone DKEY-146L2 in l...    44   2.2    1
(AL732606) Mouse DNA sequence from clone RP23-271B17 on chro...    44   2.2    1
(AP001189) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   2.2    1
(AL391478) Human DNA sequence from clone RP11-552I13 on chro...    44   2.2    1
(AC150916) Bos taurus clone CH240-309L24, WORKING DRAFT SEQU...    44   2.2    1
(AC150886) Bos taurus clone CH240-481P22, WORKING DRAFT SEQU...    44   2.2    1
(AC128180) Rattus norvegicus clone CH230-373N16, *** SEQUENC...    44   2.2    1
(AC120918) Rattus norvegicus clone CH230-507E16, *** SEQUENC...    44   2.2    1
(AC111358) Rattus norvegicus clone CH230-90P4, WORKING DRAFT...    44   2.2    1
(AC097893) Rattus norvegicus clone CH230-30E15, *** SEQUENCI...    44   2.2    1
(CT956003) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   2.2    1
(AC188989) Zea mays chromosome 7 clone ZMMBBb-631G16; ZMMBBb...    44   2.2    1
(AC171976) Bos taurus clone CH240-190F11, *** SEQUENCING IN ...    44   2.2    1
(AC170682) Bos taurus clone CH240-224E19, WORKING DRAFT SEQU...    44   2.2    1
(BH477371) BOGFO80TF BOGF Brassica oleracea genomic clone BO...    44   2.2    1
(ER350938) 1092347000144 Global-Ocean-Sampling_GS-34-01-01-1...    44   2.2    1
(EJ430888) 1093015255001 Global-Ocean-Sampling_GS-28-01-01-1...    44   2.2    1
(EJ237111) 1095313003326 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.2    1
(DU165307) OG_ABa0025C13.f OG_ABa Oryza granulata genomic cl...    44   2.2    1
(DE853194) Macropus eugenii DNA, BAC clone: MEB1-017B21_R, 3...    44   2.2    1
(BQ543577) EST627204 TpMugugaSh01 Theileria parva cDNA clone...    44   2.2    1
(EY271600) BF01053A2D03.f1 Normalized subtracted keck librar...    44   2.2    1
(EY263089) BF01034B1B06.f1 Normalized subtracted keck librar...    44   2.2    1
(CP000323) Psychrobacter cryohalolentis K5, complete genome.       44   2.2    1
(BX571819) Zebrafish DNA sequence from clone CH211-105H3 in ...    34   2.4    4
(EJ675646) 1092955078052 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.5    3
(AL953909) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   2.5    6
(CR751608) Zebrafish DNA sequence from clone DKEY-41E15 in l...    40   2.9    4
(CT009766) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.1    5
(CX792210) LcSpE01989 LcSpE Lates calcarifer cDNA clone LSE4...    34   3.2    2
(CU463043) Medicago truncatula chromosome 5 clone mth2-85j9,...    36   3.3    4
(BX545860) Campylobacter jejuni.                                   32   3.5    3
(AC024118) Homo sapiens chromosome 3p clone RP11-38n18, WORK...    40   3.5    4
(GE722658) CBUP1293.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a...    32   3.8    2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    32   3.8    8
(AC208944) Populus trichocarpa clone JGIACSB1089-L10, comple...    42   3.9    3
(BX571777) Zebrafish DNA sequence from clone CH211-260F1 in ...    40   3.9    5
(CR854964) Zebrafish DNA sequence from clone DKEY-58J19 in l...    30   4.0    6
(AC171401) Mus musculus chromosome 7, clone RP23-174D7, comp...    34   4.1    2
(AC185024) Bos taurus clone CH240-273O17, WORKING DRAFT SEQU...    32   4.1    2
(FP015940) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   4.1    2
(CU929571) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   4.1    2
(FP101893) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   4.1    2
(CE751037) tigr-gss-dog-17000369611569 Dog Library Canis lup...    34   4.1    2
(AC221534) Bos taurus clone CH240-408G4, WORKING DRAFT SEQUE...    32   4.1    2
(AC171403) Mus musculus chromosome 7 clone RP24-355L18 map 7...    34   4.2    2
(AC157782) Mus musculus chromosome 7, clone RP23-86L13, comp...    34   4.2    2
(BX927402) Zebrafish DNA sequence from clone CH211-262G12 in...    34   4.2    2
(BX908784) Zebrafish DNA sequence from clone DKEY-69I13.           34   4.3    2
(AC213496) Populus trichocarpa clone POP080-H20, complete se...    32   4.3    2
(CR405703) Zebrafish DNA sequence from clone DKEYP-52E4 in l...    32   4.4    2
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      40   4.4    3
(EA681814) Sequence 60693 from patent US 7365185.                  32   4.4    4
(AC165228) Mus musculus chromosome 7 clone wi1-1818A20 map 7...    34   4.5    2
(AC174079) Mus musculus chromosome 7 clone wi1-379C4 map 7, ...    34   4.5    2
(CR450772) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    32   4.6    8
(AC116527) Mus musculus chromosome 16, clone RP24-354B8, com...    40   4.7    5
(CU813325) A BAC library has been constructed from PN40024 g...    40   4.7    2
(FK193310) XABT206741.g1 Gateway compatible cien cDNA librar...    32   4.9    3
(AM476695) Vitis vinifera contig VV78X062930.3, whole genome...    30   4.9    2
(AM471085) Vitis vinifera contig VV78X233248.6, whole genome...    30   5.0    2
(AC160396) Pan troglodytes BAC clone CH251-354A6 from chromo...    36   5.0    4
(AM620507) Entamoeba invadens IP1 GSS, clone inv129g04.p1k.        32   5.2    2
(EY258083) BF01029A2A10.f1 Normalized subtracted keck librar...    38   5.2    2
(CR457462) Zebrafish DNA sequence from clone CH211-1O7 in li...    38   5.4    4
(DQ534713) Rivellia flaviventris 16S ribosomal RNA gene, par...    34   5.5    2
(BX004771) Zebrafish DNA sequence from clone CH211-112I15 in...    36   5.5    4
(BZ400518) EINDS70TF EI_10_12_KB Entamoeba invadens genomic ...    32   5.6    2
(EK307475) 1095462385540 Global-Ocean-Sampling_GS-31-01-01-1...    30   5.6    2
(ER326147) 1092344214448 Global-Ocean-Sampling_GS-34-01-01-1...    32   5.6    2
(DX818976) MUGQ_CH252P068J10Sp6_AV1156_039 CHORI-252 Vervet ...    34   5.6    2
(CK518206) rswjb0_006769.y1 swj Bombyx mori cDNA, mRNA seque...    32   5.6    2
(DX500381) Cpl42337 Papaya Genomic DNA BAC Library Carica pa...    34   5.7    2
(DX493317) Cpl35168 Papaya Genomic DNA BAC Library Carica pa...    34   5.7    2
(DX491027) Cpl32846 Papaya Genomic DNA BAC Library Carica pa...    34   5.7    2
(DX483938) Cpl25637 Papaya Genomic DNA BAC Library Carica pa...    34   5.7    2
(ER791388) PPTCL44TF Solanum tuberosum RHPOTKEY BAC ends Sol...    32   5.7    2
(DX487974) Cpl29753 Papaya Genomic DNA BAC Library Carica pa...    34   5.8    2
(CT352844) Sus scrofa genomic clone CH242-453K24, genomic su...    30   5.9    2
(AF245226) Homo sapiens chromosome 21 map 21q21 clone B845I1...    38   5.9    5
(EK026239) 1092955367430 Global-Ocean-Sampling_GS-31-01-01-1...    38   5.9    2
(CR354588) Zebrafish DNA sequence from clone CH211-34M5 in l...    30   6.0    6
(AF295546) Malawimonas jakobiformis mitochondrial DNA, compl...    30   6.0    6
(CT961060) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    30   6.0    6
(AC179911) Strongylocentrotus purpuratus clone R3-1003F14, W...    36   6.0    5
(J01478) Yeast (S.cerevisiae) mitochondrial oxi2 gene encodi...    38   6.1    2
(AZ692084) ENTLF60TF Entamoeba histolytica Sheared DNA Entam...    38   6.3    2
(AC154568) Mus musculus BAC clone RP23-246L11 from chromosom...    38   6.3    5
(EK044849) 1092959543885 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.6    2
(ED675824) GM_WBb0006H11.f GM_WBb Glycine max genomic clone ...    34   6.7    3
(AZ532586) ENTCK31TF Entamoeba histolytica Sheared DNA Entam...    26   6.8    4
(AL590488) Human DNA sequence from clone RP11-71B19 on chrom...    32   6.8    5
(EI892305) CAH1-50K6TV CAA1Ba Cicer arietinum genomic clone ...    30   8.1    3
(AC210505) Populus trichocarpa clone POP021-M24, complete se...    42   8.2    6
(BX163946) Danio rerio genomic clone DKEY-149P21, genomic su...    34   8.4    3
(CU462983) Zebrafish DNA sequence from clone DKEY-37K4 in li...    42   8.6    1
(CT573456) Zebrafish DNA sequence from clone CH211-190P6 in ...    42   8.6    1
(BX663516) Zebrafish DNA sequence from clone DKEY-16F21 in l...    42   8.6    1
(BX649517) Zebrafish DNA sequence from clone DKEY-174D5 in l...    42   8.6    1
(BX649401) Zebrafish DNA sequence from clone DKEY-48E10 in l...    42   8.6    1
(BX547928) Zebrafish DNA sequence from clone DKEY-172O10 in ...    42   8.6    1
(BX005210) Zebrafish DNA sequence from clone DKEY-222F8 in l...    42   8.6    1
(BX005032) Zebrafish DNA sequence from clone CH211-180P9 in ...    42   8.6    1
(BX005018) Zebrafish DNA sequence from clone DKEY-209K18.          42   8.6    1
(AL928936) Zebrafish DNA sequence from clone CH211-133H2 in ...    42   8.6    1
(AL844514) Zebrafish DNA sequence from clone DKEY-7E20 in li...    42   8.6    1
(AL772332) Zebrafish DNA sequence from clone CH211-150A22 in...    42   8.6    1
(BV594655) S215P6563RC5.T0 Clara Pan troglodytes troglodytes...    42   8.6    1
(BV076242) S212P6125FB12.T0 CZECHII/Ei Mus musculus STS geno...    42   8.6    1
(BX322625) Mouse DNA sequence from clone RP24-158I12 on chro...    42   8.6    1
(AC174383) Mus musculus BAC clone RP23-244A20 from chromosom...    42   8.6    1
(AC166170) Mus musculus BAC clone RP23-174N23 from chromosom...    42   8.6    1
(AC165415) Mus musculus chromosome 15, clone RP23-17G19, com...    42   8.6    1
(AC140460) Mus musculus BAC clone RP24-151D4 from chromosome...    42   8.6    1
(AC140424) Mus musculus BAC clone RP23-112O8 from chromosome...    42   8.6    1
(AC132875) Mus musculus chromosome 15, clone RP24-381O23, co...    42   8.6    1
(AC121495) Mus musculus chromosome 18, clone RP24-181M14, co...    42   8.6    1
(AC118212) Mus musculus chromosome 6, clone RP24-170E4, comp...    42   8.6    1
(CU914528) S.lycopersicum DNA sequence from clone LE_HBa-27B...    42   8.6    1
(CU151874) M.truncatula DNA sequence from clone MTH2-171E23 ...    42   8.6    1
(BT042202) Zea mays full-length cDNA clone ZM_BFb0160J02 mRN...    42   8.6    1
(BT040953) Zea mays full-length cDNA clone ZM_BFc0154O17 mRN...    42   8.6    1
(BT040601) Zea mays full-length cDNA clone ZM_BFc0103F01 mRN...    42   8.6    1
(AC189508) Brassica rapa subsp. pekinensis clone KBrB088I08,...    42   8.6    1
(AC189443) Brassica rapa subsp. pekinensis clone KBrB070J11,...    42   8.6    1
(CQ413114) Sequence 20185 from Patent WO0170979.                   42   8.6    1
(BD452976) Diagnosis of Diseases Associated with tumor suppr...    42   8.6    1
(AX251455) Sequence 423 from Patent WO0168912.                     42   8.6    1
(EU600793) Formica paralugubris haplotype H1 NADH dehydrogen...    42   8.6    1
(AB240167) Brachyplatys vahlii mitochondrial gene for 16S rR...    42   8.6    1
(AP003173) Homo sapiens genomic DNA, chromosome 11 clone:CTD...    42   8.6    1
(AP002496) Homo sapiens genomic DNA, chromosome 11q, clone:C...    42   8.6    1
(AL627082) Human DNA sequence from clone RP4-785J1 on chromo...    42   8.6    1
(AL590672) Human DNA sequence from clone CTD-2609B1 on chrom...    42   8.6    1
(AC096564) Homo sapiens BAC clone RP11-286E11 from 4, comple...    42   8.6    1
(AC156235) Bos taurus clone CH240-46C9, WORKING DRAFT SEQUEN...    42   8.6    1
(AC156086) Bos taurus clone CH240-57E7, WORKING DRAFT SEQUEN...    42   8.6    1
(AC156048) Bos taurus clone CH240-49N24, WORKING DRAFT SEQUE...    42   8.6    1
(AC155873) Bos taurus clone CH240-32O22, WORKING DRAFT SEQUE...    42   8.6    1
(AC155768) Bos taurus clone CH240-28K20, WORKING DRAFT SEQUE...    42   8.6    1
(AC144181) Macaca mulatta clone CH250-270L19, WORKING DRAFT ...    42   8.6    1
(AC141855) Sus scrofa clone RP44-274B4, WORKING DRAFT SEQUEN...    42   8.6    1
(AC136805) Rattus norvegicus clone CH230-409J4, *** SEQUENCI...    42   8.6    1
(AC135517) Rattus norvegicus clone CH230-264A16, WORKING DRA...    42   8.6    1
(AC135436) Rattus norvegicus clone CH230-202G13, WORKING DRA...    42   8.6    1
(AC130740) Rattus norvegicus clone CH230-163J1, *** SEQUENCI...    42   8.6    1
(AC130228) Rattus norvegicus clone CH230-53K23, *** SEQUENCI...    42   8.6    1
(AC128177) Rattus norvegicus clone CH230-30B6, *** SEQUENCIN...    42   8.6    1
(AC128110) Rattus norvegicus clone CH230-410C11, WORKING DRA...    42   8.6    1
(AC125987) Rattus norvegicus clone CH230-15C18, *** SEQUENCI...    42   8.6    1
(AC121424) Rattus norvegicus clone CH230-122F17, *** SEQUENC...    42   8.6    1
(AC114370) Rattus norvegicus clone CH230-127J15, *** SEQUENC...    42   8.6    1
(AC111621) Rattus norvegicus clone CH230-123P2, WORKING DRAF...    42   8.6    1
(AC111559) Rattus norvegicus clone CH230-47H3, *** SEQUENCIN...    42   8.6    1
(AC111095) Mus musculus clone RP23-174L13, WORKING DRAFT SEQ...    42   8.6    1
(AC098026) Rattus norvegicus clone CH230-93E23, WORKING DRAF...    42   8.6    1
(AC095068) Rattus norvegicus clone CH230-6N2, WORKING DRAFT ...    42   8.6    1
(CU855617) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.6    1
(AC090247) Homo sapiens chromosome 8 clone RP11-799J3 map 8,...    42   8.6    1
(CU467958) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.6    1
(CU464187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.6    1
(CR954302) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.6    1
(CR954267) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.6    1
(AP002798) Homo sapiens genomic DNA, chromosome 11q clone:RP...    42   8.6    1
(AL355584) Human DNA sequence *** SEQUENCING CANCELLED *** f...    42   8.6    1
(AC234697) Solanum tuberosum chromosome 6 clone RHPOTKEY134F...    42   8.6    1
(AC231622) Homo sapiens chromosome 1 clone ABC13-47453000K8,...    42   8.6    1
(AC230905) Bos taurus clone CH240-496B3, WORKING DRAFT SEQUE...    42   8.6    1
(AC230609) Bos taurus clone CH240-503N6, WORKING DRAFT SEQUE...    42   8.6    1
(AC230155) Bos taurus clone CH240-519E20, WORKING DRAFT SEQU...    42   8.6    1
(AC206936) Solanum tuberosum chromosome 6 clone RHPOTKEY102I...    42   8.6    1
(AC203748) Zea mays chromosome 9 clone CH201-333H5; ZMMBBc03...    42   8.6    1
(AC197274) Zea mays chromosome 4 clone CH201-111C4; ZMMBBc01...    42   8.6    1
(AC189455) Brassica rapa subsp. pekinensis clone KBrB072L19,...    42   8.6    1
(AC173327) Bos taurus clone CH240-120O16, WORKING DRAFT SEQU...    42   8.6    1
(AC170957) Bos taurus clone CH240-254I20, WORKING DRAFT SEQU...    42   8.6    1
(AC167175) Bos taurus clone CH240-186N24, WORKING DRAFT SEQU...    42   8.6    1
(AC166771) Mus musculus chromosome 15 clone RP24-153G1 map 1...    42   8.6    1
(AC164474) Bos taurus clone CH240-148O19, *** SEQUENCING IN ...    42   8.6    1
(AC000016) Homo sapiens chromosome 4, *** SEQUENCING IN PROG...    42   8.6    1
(AZ539178) ENTDU18TR Entamoeba histolytica Sheared DNA Entam...    42   8.6    1
(AZ286502) RPCI-23-155K7.TJ RPCI-23 Mus musculus genomic clo...    42   8.6    1
(FI236245) CccaBb030-A20JR CccABb Cajanus cajan genomic clon...    42   8.6    1
(ET955510) CHO_OF580xe09r1.ab1 CHO_OF Nicotiana tabacum geno...    42   8.6    1
(ET955434) CHO_OF580xe09f1.ab1 CHO_OF Nicotiana tabacum geno...    42   8.6    1
(ET172371) MUGQ_CH252P375G01T7_CP706_009 CHORI-252 Vervet Mo...    42   8.6    1
(ER873868) MUGQ_CH252P262I07T7_CN537_024 CHORI-252 Vervet Mo...    42   8.6    1
(ER873169) MUGQ_CH252P261I09Sp6_CN535_039 CHORI-252 Vervet M...    42   8.6    1
(ER570400) 1093015790273 Global-Ocean-Sampling_GS-36-01-01-2...    42   8.6    1
(ER517539) 1093015526990 Global-Ocean-Sampling_GS-35-01-01-1...    42   8.6    1
(EK507429) 1095515463088 Global-Ocean-Sampling_GS-32-01-01-1...    42   8.6    1
(EK482637) 1095469529294 Global-Ocean-Sampling_GS-32-01-01-1...    42   8.6    1
(EK312876) 1095462403120 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.6    1
(EK101660) 1092963019740 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.6    1
(DH679363) Rattus norvegicus DNA, BAC clone: RNB1-232B07, 5'...    42   8.6    1
(DE582428) Bombyx mori genomic DNA, Fosmid clone:GBMFno232_l...    42   8.6    1
(CR121748) Forward strand read from insert in 5'HPRT inserti...    42   8.6    1
(CG337335) OG0FK59TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   8.6    1
(CG263663) OG0AX38TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   8.6    1
(CG144656) PUJHC76TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   8.6    1
(CE367380) tigr-gss-dog-17000362024150 Dog Library Canis lup...    42   8.6    1
(CC496137) CH240_332A11.T7 CHORI-240 Bos taurus genomic clon...    42   8.6    1
(CC493182) CH240_327N5.T7 CHORI-240 Bos taurus genomic clone...    42   8.6    1
(BZ642408) OGCBJ04TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   8.6    1
(BH806749) 1008075E09.x1 1008 - RescueMu Grid I Zea mays gen...    42   8.6    1
(BH616607) BMBAC309C08T7_PSU Brugia malayi Genomic Bac Libra...    42   8.6    1
(EG311755) MSAM267056_3646_3760 LCM-dissected maize inbred l...    42   8.6    1
(EG257438) MSAM193858_2538_2368 LCM-dissected maize inbred l...    42   8.6    1
(EG242391) MSAM161449_2167_3235 LCM-dissected maize inbred l...    42   8.6    1
(EG236890) MSAM150902_2822_2817 LCM-dissected maize inbred l...    42   8.6    1
(EG224250) MSAM088410_3045_2005 LCM-dissected maize inbred l...    42   8.6    1
(EG198061) MSAM041591_2596_2400 LCM-dissected maize inbred l...    42   8.6    1
(EG180053) MSAM027251_2307_0477 LCM-dissected maize inbred l...    42   8.6    1
(EG141806) MSAM230290_1690_3548 LCM-dissected maize inbred l...    42   8.6    1
(EG055447) MSAM029468_1641_1829 LCM-dissected maize inbred l...    42   8.6    1
(EE175596) ZM_BFc0154O17.f ZM_BFc Zea mays cDNA clone ZM_BFc...    42   8.6    1
(EE038773) ZM_BFc0103F01.f ZM_BFc Zea mays cDNA clone ZM_BFc...    42   8.6    1
(EE034654) ZM_BFc0096J07.f ZM_BFc Zea mays cDNA clone ZM_BFc...    42   8.6    1
(EE028308) ZM_BFc0086J09.f ZM_BFc Zea mays cDNA clone ZM_BFc...    42   8.6    1
(EB822778) ZM_BFb0384M08.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(EB820655) ZM_BFb0379O14.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(EB703791) ZM_BFb0348L24.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(EB703621) ZM_BFb0348C21.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(EB363696) naz12c05.y1 Guinea pig retina. Unnormalized (naz)...    42   8.6    1
(EB165138) ZM_BFb0337N20.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DY623410) ZM_BFb0294H03.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DY540408) ZM_BFb0355L21.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DY540378) ZM_BFb0355K22.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DY305283) KN0AAH3BA02RM1 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY305271) KN0AAH3AG07RM1 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY305168) KN0AAH2DA02RM1 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY305022) KN0AAH1DG07RM2 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY304997) KN0AAH1DB12RM2 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY304970) KN0AAH1CC10RM2 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY304891) KN0AAH1AB10RM2 PhII-III-Vesicles1 Citrus clementi...    42   8.6    1
(DY240628) ZM_BFb0260E24.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DY238471) ZM_BFb0256F14.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DW941341) MSAM214973_3472_3089 LCM-dissected maize shoot ap...    42   8.6    1
(DW887390) MSAM097334_3365_1485 LCM-dissected maize shoot ap...    42   8.6    1
(DW862721) MSAM022652_2360_1152 LCM-dissected maize shoot ap...    42   8.6    1
(DW468615) ZM_BFb0172K24.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV541144) ZM_BFb0235M17.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV529426) ZM_BFb0218E22.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV173789) ZM_BFb0176P15.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV171804) ZM_BFb0172K24.r ZM_BFb Zea mays cDNA 5', mRNA seq...    42   8.6    1
(DV164271) ZM_BFb0160K17.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV163371) ZM_BFb0159F08.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV029052) ZM_BFb0151E24.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DV020571) ZM_BFb0138P08.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DT940704) ZM_BFb0123K09.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DT650440) ZM_BFb0114A13.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DT645179) ZM_BFb0105B03.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DT641310) ZM_BFb0099F06.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DR971546) ZM_BFb0094E19.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DR960073) ZM_BFb0073F05.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DR810761) ZM_BFb0038K12.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DR794178) ZM_BFb0014M14.f ZM_BFb Zea mays cDNA 3', mRNA seq...    42   8.6    1
(DN337325) LIB3187-032-P1-K1-C7 LIB3187 Canis lupus familiar...    42   8.6    1
(DN217634) MEST1054_D01.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR...    42   8.6    1
(DC894550) Citrus unshiu mRNA, clone: MWYBF21, 5'-end sequen...    42   8.6    1
(DB201052) Homo sapiens cDNA clone TRACH2010388, 5' end, mRN...    42   8.6    1
(D31421) Homo sapiens fetal-lung cDNA 5'-end sequence, HUML1...    42   8.6    1
(CX309254) C19003E08T7 FlavFrSub1 Citrus clementina x Citrus...    42   8.6    1
(CX307640) C19009G06T7 FlavFrSub1 Citrus clementina x Citrus...    42   8.6    1
(CX304798) C16015G11SK ExocortL1 Citrus medica cDNA clone C1...    42   8.6    1
(CX043800) UCRCS07_13E02_g Parent Washington Navel Orange Th...    42   8.6    1
(CX043799) UCRCS07_13E02_b Parent Washington Navel Orange Th...    42   8.6    1
(CT782225) Paramecium tetraurelia 5-PRIME EST from clone LK0...    42   8.6    1
(CO533855) 3530_1_223_1_B11.x_1 3530 - Full length cDNA libr...    42   8.6    1
(CO532983) 3530_1_217_1_A05.x_1 3530 - Full length cDNA libr...    42   8.6    1
(CO451554) MZCCL10164G04.g Maize Endosperm cDNA Library Zea ...    42   8.6    1
(CO447310) MZCCL10114D04.g Maize Endosperm cDNA Library Zea ...    42   8.6    1
(CK559289) rswpb0_001240.y1 swp Bombyx mori cDNA, mRNA seque...    42   8.6    1
(CF658972) tac53a06.x1 Hydra EST -IV Hydra magnipapillata cD...    42   8.6    1
(CF418014) USDA-FP_115000-944 Citrus sinensis: Insect-damage...    42   8.6    1
(CB280890) 3529_1_16_1_G07.y_5 3529 - 2 mm ear tissue from S...    42   8.6    1
(CB265669) 1004574 Human Fat Cell 5'-Stretch Plus cDNA Libra...    42   8.6    1
(CA405597) 1001746 Human Fat Cell 5'-Stretch Plus cDNA Libra...    42   8.6    1
(BX499403) Homo sapiens mRNA; EST DKFZp779D2445_r1  (from cl...    42   8.6    1
(BM129814) if23e08.y1 Melton Normalized Human Islet 4 N4-HIS...    42   8.6    1
(BM129624) if20h12.y1 Melton Normalized Human Islet 4 N4-HIS...    42   8.6    1
(FL875675) CCGI15224.b1 CCGI Panicum virgatum etiolated seed...    42   8.6    1
(FE619618) CBYY2341.b1 CBYY Panicum virgatum Kanlow crown Pa...    42   8.6    1
(FC929834) KN0AAH3AG07RM1 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC929541) KN0AAH2DA02RM1 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC929527) KN0AAH1AB10RM2 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC929156) KN0AAH3CF12RM1 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC929111) KN0AAH1DG07RM2 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC929030) KN0AAH1DB12RM2 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC928962) KN0AAH3BD08RM1 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC928892) KN0AAH3BA02RM1 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(FC928879) KN0AAH1CC10RM2 PhII-IIIV1 Citrus clementina cDNA ...    42   8.6    1
(AC092665) Homo sapiens BAC clone RP11-544B5 from 4, complet...    36   9.1    3
(BX571830) Zebrafish DNA sequence from clone DKEY-261I16 in ...    34   9.3    5
(CZ540247) SRAA-aad30e11.b1 Strongyloides ratti whole genome...    30   9.8    3
(AC208807) Heliconius erato clone BBAM-13K22, WORKING DRAFT ...    40   9.8    6
(AC107303) Homo sapiens chromosome 3 clone RP11-595I22, WORK...    36   9.8    4
(DX546234) GH_MBb0058E23f GH_MBb Gossypium hirsutum genomic ...    32   9.8    2

>(AU271356) Dictyostelium discoideum gamete cDNA clone:FC-IC0122, 5'
           end single read.
          Length = 231

 Score =  254 bits (128), Expect(2) = 5e-95
 Identities = 128/128 (100%)
 Strand = Plus / Plus


Query: 103 ttatttaaaactttatattacatttttaaagaagtttaggcctttttattcatacccaag 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttatttaaaactttatattacatttttaaagaagtttaggcctttttattcatacccaag 162


Query: 163 taaacattagctgtggatttaccaactgattctgagtcattttcattgaacaaatgatat 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taaacattagctgtggatttaccaactgattctgagtcattttcattgaacaaatgatat 222


Query: 223 ctaatgag 230
           ||||||||
Sbjct: 223 ctaatgag 230

 Score =  125 bits (63), Expect(2) = 5e-95
 Identities = 63/63 (100%)
 Strand = Plus / Plus


Query: 28 gaattatattatttatttaatctatttgtattaaatgagtttaaacttaataaaataaat 87
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 gaattatattatttatttaatctatttgtattaaatgagtttaaacttaataaaataaat 87


Query: 88 tgg 90
          |||
Sbjct: 88 tgg 90

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 338,118,095
Number of extensions: 29240511
Number of successful extensions: 7856957
Number of sequences better than 10.0: 343
Length of query: 230
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 207
Effective length of database: 99,442,330,388
Effective search space: 20584562390316
Effective search space used: 20584562390316
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U03307-1 (Contig-U03307-1Q) /CSM_Contig/Contig-U03307-1Q.Seq.d
         (230 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 172,507,606
Number of extensions: 1947003
Number of successful extensions: 1911
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1911
Number of HSP's successfully gapped: 0
Length of query: 76
Length of database: 1,061,185,681
Length adjustment: 47
Effective length of query: 29
Effective length of database: 907,568,625
Effective search space: 26319490125
Effective search space used: 26319490125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.31  top: 0.87  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.47  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U03307-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1