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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03294-1
Contig ID Contig-U03294-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Contig-U03294-1Q.Seq.d
ACCAGTTGTTGAAATTGTAAGTATTAATGATCAAAGATTTTGTTCGACCT
ATGAAGATTGTGATCAAGAAGTATTGAATAATTGGGATAATTTCTTTCAA
CAAATTATCAATATTAGAAACAATGGTAGCGAAGGTGATGATCAACAACT
TTTGAAATTTATGTGGACAGCCCATATTGGTAGTATTGATAAGGCAACAA
AATTATTTACAGATTCATTATTATTATTACCAAAAAATGAATTAAGATTT
GGAAATGGTTGGGCACATTTTGTTGATGTTATTGCAACTGTAAACTTTAA
CACCAACTATTCAACAGTTTATCATTTAGGTCAACAATTACCTCCAATCA
TGTTAAATAGTAATGATACTCATCCATCCTCAATAGAATCATTCACAAAA
GAACAAAGAAATGTAGTTTTAACAATGTATGAAATTAATGACCTCTCTTC
CAATAATTTAGTTTGGAATTCTTTTATTG
Gap no gap
Contig length 479
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 205025
End point 205501
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 2
Link to clone list U03294
List of clone(s) 

est1=FC-IC0071F,1,479
est2=FC-IC0109F,1,480
Translated Amino Acid sequence 
PVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIG
SIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNS
NDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFI
Translated Amino Acid sequence (All Frames) 
Frame A:
tsc*ncky**skilfdl*rl*srsie*lg*flstnyqy*kqw*rr**sttfeiyvdspyw
*y**gnkiiyrfiiiitkk*ikiwkwlgtfc*cycnckl*hqlfnslsfrstitsnhvk*
**yssilnriihkrtkkcsfnnv*n**plfq*fsleffy


Frame B:
PVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIG
SIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNS
NDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFI


Frame C:
qllkl*vlmikdfvrpmkivikky*iigiisfnklsiletmvakvminnf*nlcgqpilv
vlirqqnylqihyyyyqkmn*dlemvghillmllql*tltptiqqfii*vnnylqsc*iv
milihpq*nhsqknkem*f*qcmklmtslpii*fgilll
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03294-1 (Contig-U03294-1Q)
/CSM_Contig/Contig-U03294-1Q.Seq.d
         (479 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Conti...   950  0.0
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti...    54  1e-07
Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U12510-1 (Contig-U12510-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U12162-1 (Contig-U12162-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U11710-1 (Contig-U11710-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Conti...    32  0.52

>Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Contig-U03294-1Q.Seq.d
          Length = 479

 Score =  950 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagttgttgaaattgtaagtattaatgatcaaagattttgttcgacctatgaagattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   accagttgttgaaattgtaagtattaatgatcaaagattttgttcgacctatgaagattg 60

                                                                       
Query: 61  tgatcaagaagtattgaataattgggataatttctttcaacaaattatcaatattagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgatcaagaagtattgaataattgggataatttctttcaacaaattatcaatattagaaa 120

                                                                       
Query: 121 caatggtagcgaaggtgatgatcaacaacttttgaaatttatgtggacagcccatattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatggtagcgaaggtgatgatcaacaacttttgaaatttatgtggacagcccatattgg 180

                                                                       
Query: 181 tagtattgataaggcaacaaaattatttacagattcattattattattaccaaaaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtattgataaggcaacaaaattatttacagattcattattattattaccaaaaaatga 240

                                                                       
Query: 241 attaagatttggaaatggttgggcacattttgttgatgttattgcaactgtaaactttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaagatttggaaatggttgggcacattttgttgatgttattgcaactgtaaactttaa 300

                                                                       
Query: 301 caccaactattcaacagtttatcatttaggtcaacaattacctccaatcatgttaaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caccaactattcaacagtttatcatttaggtcaacaattacctccaatcatgttaaatag 360

                                                                       
Query: 361 taatgatactcatccatcctcaatagaatcattcacaaaagaacaaagaaatgtagtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatgatactcatccatcctcaatagaatcattcacaaaagaacaaagaaatgtagtttt 420

                                                                      
Query: 421 aacaatgtatgaaattaatgacctctcttccaataatttagtttggaattcttttattg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacaatgtatgaaattaatgacctctcttccaataatttagtttggaattcttttattg 479


>Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Contig-U14749-1Q.Seq.d
          Length = 1249

 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 247 atttggaaatggttgggcacattttgttgatgttattgc 285
           |||||| ||||||||||| |||||||||||||| |||||
Sbjct: 794 atttgggaatggttgggctcattttgttgatgtcattgc 832


 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 83  tgggataatttctttcaacaaattatcaatattagaaacaatggtag 129
           |||||||  ||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 629 tgggatatattctttcaagaaattatcaatattaaaaataatggtag 675


>Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Contig-U05033-1Q.Seq.d
          Length = 790

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 215 tcattattattattaccaa 233
           |||||||||||||||||||
Sbjct: 180 tcattattattattaccaa 162


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,766
Number of Sequences: 6905
Number of extensions: 20766
Number of successful extensions: 8210
Number of sequences better than 10.0: 853
length of query: 479
length of database: 5,674,871
effective HSP length: 16
effective length of query: 463
effective length of database: 5,564,391
effective search space: 2576313033
effective search space used: 2576313033
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.30
Homology vs DNA 
Query= Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Contig-U03294-1Q.Seq.d
         (479 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU271351) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   942   0.0    1
(AU271330) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   940   0.0    1
(AU266152) Dictyostelium discoideum vegetative cDNA clone:VS...    54   4e-12  2
(AU263454) Dictyostelium discoideum vegetative cDNA clone:VS...    54   4e-12  2
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    54   8e-10  2
(BJ426980) Dictyostelium discoideum cDNA clone:ddv60k21, 5' ...    54   3e-09  2
(AC105039) Homo sapiens chromosome 18, clone CTD-2357J19, co...    44   0.003  4
(AU267570) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.032  6
(AC105032) Homo sapiens chromosome 18, clone CTD-2272L2, com...    44   0.057  2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    48   0.31   1
(CT406884) Sus scrofa genomic clone CH242-291P10, genomic su...    42   0.56   2
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    32   0.77   12
(AB070523) Mus musculus HMT gene for histamine N-methyltrans...    40   1.1    3
(CU855910) Zebrafish DNA sequence from clone CH1073-177K7 in...    46   1.2    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    46   1.2    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   1.2    1
(AC159703) Trypanosoma brucei chromosome 8 clone RPCI93-30K1...    46   1.2    1
(AC159405) Trypanosoma brucei chromosome 8 clone RPCI93-11J1...    46   1.2    1
(AC015660) Homo sapiens chromosome 15, clone RP11-20G13, com...    46   1.2    1
(FP101888) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.2    1
(AC231074) Bos taurus clone CH240-492A9, WORKING DRAFT SEQUE...    46   1.2    1
(ES254222) WS03722.C21_J09 SS-B-N-22 Picea sitchensis cDNA c...    46   1.2    1
(DV997749) GQ027100.B3_D06 GQ099: Mixed spruce tissues Picea...    46   1.2    1
(CO484762) GQ0207.B3_D07 GQ020: Clean ROOTS systems -Diurnal...    46   1.2    1
(GE481703) GQ0207.B3.r_D07 GQ020: Clean ROOTS systems -Diurn...    46   1.2    1
(EX439137) GQ04009.B7_M12 GQ040 - Shoot tip - Active growth ...    46   1.2    1
(ES863952) WS027101.CR_I18 SS-IL-A-FL-14 Picea sitchensis cD...    46   1.2    1
(ES863565) WS027100.CR_H24 SS-IL-A-FL-14 Picea sitchensis cD...    46   1.2    1
(AC211709) Nomascus leucogenys BAC clone CH271-46H12 from ch...    36   1.2    5
(AC123000) Rattus norvegicus clone CH230-33L23, *** SEQUENCI...    40   1.4    3
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   1.8    8
(EY106040) CAZI4540.fwd CAZI Artemisia annua normalized leaf...    38   1.8    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   1.9    6
(BH157327) ENTSJ61TF Entamoeba histolytica Sheared DNA Entam...    38   2.1    2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   2.6    12
(AL845299) Mouse DNA sequence from clone RP23-370J19 on chro...    42   2.7    3
(AC178217) Strongylocentrotus purpuratus clone R3-3085J08, W...    38   2.7    6
(AC214098) Populus trichocarpa clone POP027-N14, complete se...    40   2.8    3
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d...    34   2.8    2
(AJ400848) Spinacia oleracea complete chloroplast genome.          40   3.0    5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   3.1    4
(AC172318) Strongylocentrotus purpuratus clone R3-14F24, WOR...    38   3.2    3
(CT030683) Mouse DNA sequence from clone RP23-22O8 on chromo...    40   3.9    4
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    32   4.5    11
(BX640463) Zebrafish DNA sequence from clone DKEY-29P10 in l...    44   4.8    1
(BV628818) S217P60427RB8.T0 Noemie Pan troglodytes troglodyt...    44   4.8    1
(AC183797) Pan troglodytes BAC clone CH251-549D21 from chrom...    44   4.8    1
(FJ052986) Pinus taeda isolate 5005 anonymous locus 0_13684_...    44   4.8    1
(FJ052985) Pinus taeda isolate 4998 anonymous locus 0_13684_...    44   4.8    1
(FJ052984) Pinus taeda isolate 4989 anonymous locus 0_13684_...    44   4.8    1
(FJ052983) Pinus taeda isolate 4991 anonymous locus 0_13684_...    44   4.8    1
(FJ052982) Pinus taeda isolate 4999 anonymous locus 0_13684_...    44   4.8    1
(FJ052981) Pinus taeda isolate 4988 anonymous locus 0_13684_...    44   4.8    1
(FJ052979) Pinus taeda isolate 4990 anonymous locus 0_13684_...    44   4.8    1
(FJ052978) Pinus taeda isolate 4995 anonymous locus 0_13684_...    44   4.8    1
(FJ052977) Pinus taeda isolate 4997 anonymous locus 0_13684_...    44   4.8    1
(FJ052976) Pinus taeda isolate 5000 anonymous locus 0_13684_...    44   4.8    1
(FJ052975) Pinus taeda isolate 4996 anonymous locus 0_13684_...    44   4.8    1
(FJ052974) Pinus taeda isolate 5003 anonymous locus 0_13684_...    44   4.8    1
(CQ582602) Sequence 10360 from Patent WO0171042.                   44   4.8    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    44   4.8    1
(AC092237) Drosophila melanogaster, chromosome 2L, region 31...    44   4.8    1
(AC007451) Drosophila melanogaster, chromosome 2L, region 31...    44   4.8    1
(AP002383) Homo sapiens genomic DNA, chromosome 11q, clone:R...    44   4.8    1
(AL157703) Human DNA sequence from clone RP11-79K3 on chromo...    44   4.8    1
(AC104343) Homo sapiens chromosome 8, clone RP11-822K17, com...    44   4.8    1
(AC021849) Homo sapiens BAC clone RP11-366G5 from 2, complet...    44   4.8    1
(AC005904) Homo sapiens 12 PAC RP4-751H1 (Roswell Park Cance...    44   4.8    1
(AC087578) Homo sapiens chromosome 11 clone RP11-116P9 map 1...    44   4.8    1
(AC212760) Homo sapiens chromosome 2 clone ABC9-46005200O4, ...    44   4.8    1
(AC201645) Strongylocentrotus purpuratus clone R3-14H15, WOR...    44   4.8    1
(AC179323) Strongylocentrotus purpuratus clone R3-1102N20, W...    44   4.8    1
(AC177367) Strongylocentrotus purpuratus clone R3-52L04, WOR...    44   4.8    1
(AC023756) Homo sapiens chromosome 11 clone RP11-53P5 map 11...    44   4.8    1
(AC020113) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   4.8    1
(AZ122701) RPCI-23-1L20.TV RPCI-23 Mus musculus genomic clon...    44   4.8    1
(FI427622) CH322-159M04.x CHORI-322 Drosophila melanogaster ...    44   4.8    1
(FI343116) CH321-26B11.y CHORI-321 Drosophila melanogaster g...    44   4.8    1
(ET088315) QM0AAA12BC11FM1 CCL1 Citrus clementina genomic cl...    44   4.8    1
(AQ114512) CIT-HSP-2378H10.TR CIT-HSP Homo sapiens genomic c...    44   4.8    1
(CW772658) OG_BBa0089M15.f OG_BBa Oryza glaberrima genomic c...    44   4.8    1
(EG599465) EMBRYOF088228A24 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    44   4.8    1
(DR120405) RTMG1_29_B05.g1_A029 Roots minus magnesium Pinus ...    44   4.8    1
(DR120332) RTMG1_29_B05.b1_A029 Roots minus magnesium Pinus ...    44   4.8    1
(DN604289) ACAC-aab51f09.g1 Hydra EST UCI 7 Hydra magnipapil...    44   4.8    1
(DA948079) Homo sapiens cDNA clone SPLEN2024346, 5' end, mRN...    44   4.8    1
(BW668753) Glycine max cDNA clone: GMFL01-29-G08, 3'end.           44   4.8    1
(BW655732) Glycine max cDNA clone: GMFL01-09-N06, 3'end.           44   4.8    1
(FM087514) Rattus norvegicus EST, 5'-end sequence, clone etn...    44   4.8    1
(EY112963) CAZI8109.fwd CAZI Artemisia annua normalized leaf...    44   4.8    1
(EY099084) CAZI24070.fwd CAZI Artemisia annua normalized lea...    44   4.8    1
(AL139023) Human chromosome 14 DNA sequence BAC R-207M8 of l...    38   4.8    5
(AC181133) Strongylocentrotus purpuratus clone R3-3037E15, W...    34   5.2    5
(AC225040) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    32   5.2    5
(BM360021) GA__Ea0026M05r Gossypium arboreum 7-10 dpa fiber ...    36   5.5    2
(AC190099) Rhinolophus ferrumequinum clone VMRC7-389M18, WOR...    38   6.0    3
(CU407213) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   6.2    2
(AC187924) Muntiacus reevesi clone CH245-9M14, WORKING DRAFT...    40   6.7    4
(GH622728) PCF0177x184 PAMP-elicited tomato leaf Solanum lyc...    36   6.9    2
(FG762372) G1146P331FI10.T0 Anolis carolinensis pooled norma...    36   7.0    2
(EY335253) CAWY6897.fwd CAWY Helobdella robusta Subtracted E...    36   7.0    2
(AC002109) Genomic sequence from Mouse 9, complete sequence.       40   7.0    4
(EK285416) 1095462311078 Global-Ocean-Sampling_GS-31-01-01-1...    34   7.2    2
(AL844838) Mouse DNA sequence from clone RP23-263E15 on chro...    40   7.9    4
(CT762000) Paramecium tetraurelia 5-PRIME EST from clone LK0...    34   7.9    2
(AC117729) Mus musculus chromosome 8, clone RP24-126M11, com...    40   8.0    7
(DT553330) EST1063970 GH_TMO Gossypium hirsutum cDNA, mRNA s...    36   8.2    2
(AM662279) Entamoeba moshkovskii FIC GSS, clone mosh121b08.p1k.    36   8.3    2
(AC159520) Bos taurus clone CH240-76J19, WORKING DRAFT SEQUE...    32   8.5    2
(AC159270) Mus musculus BAC clone RP23-450E17 from chromosom...    38   8.6    4
(AC179538) Strongylocentrotus purpuratus clone R3-1034A18, W...    42   8.8    5
(AC181968) Strongylocentrotus purpuratus clone R3-1001K08, W...    32   8.9    2
(BX510987) Zebrafish DNA sequence from clone DKEY-43H1 in li...    30   8.9    2
(AC104413) Mus musculus clone RP23-393C20, WORKING DRAFT SEQ...    40   8.9    4
(AC178567) Strongylocentrotus purpuratus clone R3-3025P13, W...    32   9.0    2
(AM572848) Paracentrotus lividus EST, clone MPMGp1173M07124Q...    30   9.1    3
(AL935189) Zebrafish DNA sequence from clone CH211-235F12 in...    38   9.2    3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    32   9.6    6

>(AU271351) Dictyostelium discoideum gamete cDNA clone:FC-IC0109, 5'
           end single read.
          Length = 480

 Score =  942 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Plus


Query: 1   accagttgttgaaattgtaagtattaatgatcaaagattttgttcgacctatgaagattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   accagttgttgaaattgtaagtattaatgatcaaagattttgttcgacctatgaagattg 60


Query: 61  tgatcaagaagtattgaataattgggataatttctttcaacaaattatcaatattagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgatcaagaagtattgaataattgggataatttctttcaacaaattatcaatattagaaa 120


Query: 121 caatggtagcgaaggtgatgatcaacaacttttgaaatttatgtggacagcccatattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 caatggtagcgaaggtgatgatcaacaacttttgaaatttatgtggacagctcatattgg 180


Query: 181 tagtattgataaggcaacaaaattatttacagattcattattattattaccaaaaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtattgataaggcaacaaaattatttacagattcattattattattaccaaaaaatga 240


Query: 241 attaagatttggaaatggttgggcacattttgttgatgttattgcaactgtaaactttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaagatttggaaatggttgggcacattttgttgatgttattgcaactgtaaactttaa 300


Query: 301 caccaactattcaacagtttatcatttaggtcaacaattacctccaatcatgttaaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caccaactattcaacagtttatcatttaggtcaacaattacctccaatcatgttaaatag 360


Query: 361 taatgatactcatccatcctcaatagaatcattcacaaaagaacaaagaaatgtagtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taatgatactcatccatcctcaatagaatcattcacaaaagaacaaagaaatgtagtttt 420


Query: 421 aacaatgtatgaaattaatgacctctcttccaataatttagtttggaattcttttattg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacaatgtatgaaattaatgacctctcttccaataatttagtttggaattcttttattg 479

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 681,122,666
Number of extensions: 46855221
Number of successful extensions: 6430858
Number of sequences better than 10.0: 119
Length of query: 479
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 456
Effective length of database: 99,442,330,388
Effective search space: 45345702656928
Effective search space used: 45345702656928
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U03294-1 (Contig-U03294-1Q) /CSM_Contig/Contig-U03294-1Q.Seq.d
         (479 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_49(AC116551|pid:none) Dictyostelium discoideum chromoso...   167   1e-40
AK075892_1(AK075892|pid:none) Mus musculus adult male tongue cDN...    61   1e-08
AK008407_1(AK008407|pid:none) Mus musculus adult male small inte...    61   1e-08
AK009516_1(AK009516|pid:none) Mus musculus adult male tongue cDN...    61   1e-08
(Q9D775) RecName: Full=Uncharacterized protein C6orf58 homolog; ...    61   1e-08
AK075881_1(AK075881|pid:none) Mus musculus adult male tongue cDN...    61   1e-08
(Q6P5S2) RecName: Full=Uncharacterized protein C6orf58; Flags: P...    57   2e-07
AL954182_2(AL954182|pid:none) Zebrafish DNA sequence from clone ...    43   0.004
BC065450_1(BC065450|pid:none) Danio rerio zgc:77778, mRNA (cDNA ...    37   0.18
EU254648_1(EU254648|pid:none) Haemoproteus coatneyi haplotype 10...    36   0.39
EU254662_1(EU254662|pid:none) Haemoproteus sp. 384 caseinolytic ...    36   0.39
(Q4QRF7) RecName: Full=Uncharacterized protein C6orf58 homolog; ...    35   0.87
CP000949_4292(CP000949|pid:none) Pseudomonas putida W619, comple...    33   3.3
EU254623_1(EU254623|pid:none) Plasmodium azurophilum haplotype W...    33   3.3
EU254658_1(EU254658|pid:none) Haemoproteus fringillae haplotype ...    32   5.7
AE014186_421(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    32   5.7
EU254657_1(EU254657|pid:none) Haemoproteus belopolskyi haplotype...    32   7.4

>AC116551_49(AC116551|pid:none) Dictyostelium discoideum chromosome 2
            map complement(581327-427576) strain AX4, complete
            sequence.
          Length = 948

 Score =  167 bits (423), Expect = 1e-40
 Identities = 80/159 (50%), Positives = 108/159 (67%)
 Frame = +2

Query: 2    PVVEIVSINDQRFCSTYEDCDQEVLNNWDXXXXXXXXXXXXGSEGDDQQLLKFMWTAHIG 181
            P VEI  I+D RFC+TY +CDQ +++ WD            GS G+D ++LK MW AHIG
Sbjct: 748  PQVEIFKIDDNRFCTTYLECDQNIMHQWDIFFQEIINIKNNGSFGNDDKILKVMWDAHIG 807

Query: 182  SIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNS 361
            SI +A+++F D+L LLP  E +FGNGWAHFVDVIA VNFNTNY+ V  L + LP  M++
Sbjct: 808  SIGQASQIFQDTLSLLPLKEKKFGNGWAHFVDVIAVVNFNTNYTQVSTLSKSLPSSMISI 867

Query: 362  NDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFI 478
             D  P  I  F+K Q NVV++M+ I+D++ ++L WN FI
Sbjct: 868  FD-FPPFIPRFSKNQNNVVMSMFAIDDIAQSSLTWNLFI 905

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 685,005,837
Number of extensions: 12389367
Number of successful extensions: 24653
Number of sequences better than 10.0: 17
Number of HSP's gapped: 24640
Number of HSP's successfully gapped: 17
Length of query: 159
Length of database: 1,061,185,681
Length adjustment: 118
Effective length of query: 41
Effective length of database: 675,508,817
Effective search space: 27695861497
Effective search space used: 27695861497
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03294-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 2