Contig-U16342-1
Contig ID Contig-U16342-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Contig-U16342-1Q.Seq.d
ATTTTCATTTCAATTCAATTTTACTAAACACAACATAACCTTATTATAAA
AACAAACATATAAAAATGACACACTCATGTAAATGCGGAGACTCTTGCCA
ATGTGGTGATAAATGTACATGTGGACCAAAGGAAACACCAAAATGTGGAT
GCAGTGACTGTAAATGTGGCGATAAATGCTCAAGTGATTGCAAATGCACC
TCTTGCACCTGTAAAAAATAAATTTTACCTTTAATAAATAAACAATTATC
ATTCAAAAAAAAAAAAAAAAAAAAAACAAAACAAATTGTTACCAACTCAA
ATCAACCAATAAAATTTCAAAAATCAAGTTACTTTTCTATTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 386
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1335367
End point 1335669
Strand (PLUS/MINUS) PLUS
Number of clones 13
Number of EST 19
Link to clone list U16342
List of clone(s)

est1=CHK209F,1,264
est2=CHK209Z,1,243
est3=AHG706Z,6,251
est4=AFI315F,7,264
est5=AFI315Z,7,221
est6=AHK205F,7,264
est7=AHR212F,7,264
est8=AHR212Z,7,178
est9=CFB677F,7,264
est10=CFB677Z,7,183
est11=SHD355F,12,265
est12=SHD355Z,12,178
est13=CHK450F,17,264
est14=CHK450Z,17,179
est15=SSB366F,18,386
est16=SSB371E,18,289
est17=SSE686E,30,345
est18=SSD268E,40,333
est19=VSC192E,43,355
Translated Amino Acid sequence
fhfnsillntt*PYYKNKHIKMTHSCKCGDSCQCGDKCTCGPKETPKCGCSDCKCGDKCS
SDCKCTSCTCKK*ilplinkqlsfkkkkkkktkqivtnsnqpikfqkssyfsifkkkkkk
kkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ifisiqfy*tqhnliiktni*k*hthvnaetlanvvinvhvdqrkhqnvdavtvnvaina
qvianaplapvknkfyl**innyhskkkkkkkqnkllptqinq*nfknqvtflflkkkkk
kkkkkkkk


Frame B:
fsfqfnftkhnitll*kqtykndtlm*mrrllpmw**mymwtkgntkmwmq*l*mwr*ml
k*lqmhllhl*kinftfnk*tiiiqkkkkkknktncyqlkstnkiskikllfyf*kkkkk
kkkkkkkk


Frame C:
fhfnsillntt*PYYKNKHIKMTHSCKCGDSCQCGDKCTCGPKETPKCGCSDCKCGDKCS
SDCKCTSCTCKK*ilplinkqlsfkkkkkkktkqivtnsnqpikfqkssyfsifkkkkkk
kkkkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16342-1 (Contig-U16342-1Q)
/CSM_Contig/Contig-U16342-1Q.Seq.d
(386 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Conti... 504 e-143
Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U11514-1 (Contig-U11514-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U11038-1 (Contig-U11038-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U05805-1 (Contig-U05805-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U04641-1 (Contig-U04641-1Q) /CSM_Contig/Conti... 36 0.038
Contig-U15953-1 (Contig-U15953-1Q) /CSM_Contig/Conti... 34 0.15
Contig-U15388-1 (Contig-U15388-1Q) /CSM_Contig/Conti... 34 0.15
Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Conti... 34 0.15

>Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Contig-U16342-1Q.Seq.d
Length = 386

Score = 504 bits (254), Expect = e-143
Identities = 254/254 (100%)
Strand = Plus / Plus


Query: 1 attttcatttcaattcaattttactaaacacaacataaccttattataaaaacaaacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttcatttcaattcaattttactaaacacaacataaccttattataaaaacaaacata 60


Query: 61 taaaaatgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaaaatgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacat 120


Query: 121 gtggaccaaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtggaccaaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgct 180


Query: 181 caagtgattgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagtgattgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaata 240


Query: 241 aacaattatcattc 254
||||||||||||||
Sbjct: 241 aacaattatcattc 254


Score = 135 bits (68), Expect = 6e-32
Identities = 68/68 (100%)
Strand = Plus / Plus


Query: 277 caaaacaaattgttaccaactcaaatcaaccaataaaatttcaaaaatcaagttactttt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 caaaacaaattgttaccaactcaaatcaaccaataaaatttcaaaaatcaagttactttt 336


Query: 337 ctattttt 344
||||||||
Sbjct: 337 ctattttt 344


>Contig-U13123-1 (Contig-U13123-1Q) /CSM_Contig/Contig-U13123-1Q.Seq.d
Length = 407

Score = 36.2 bits (18), Expect = 0.038
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 40 cttattataaaaacaaacatat 61
||||||||||||||||| ||||
Sbjct: 295 cttattataaaaacaaatatat 316


>Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d
Length = 1491

Score = 36.2 bits (18), Expect = 0.038
Identities = 24/26 (92%)
Strand = Plus / Minus


Query: 214 aaaaataaattttacctttaataaat 239
|||||||||||| ||||||||||||
Sbjct: 940 aaaaataaatttatcctttaataaat 915


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,313
Number of Sequences: 8402
Number of extensions: 10313
Number of successful extensions: 1078
Number of sequences better than 10.0: 326
length of query: 386
length of database: 8,075,542
effective HSP length: 16
effective length of query: 370
effective length of database: 7,941,110
effective search space: 2938210700
effective search space used: 2938210700
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 3.29
Homology vs DNA
Query= Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Contig-U16342-1Q.Seq.d
(386 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ360188) Dictyostelium discoideum cDNA clone:ddc4i20, 5' e... 492 e-135 1
(BJ335655) Dictyostelium discoideum cDNA clone:dda51i02, 5' ... 492 e-135 1
(BJ326607) Dictyostelium discoideum cDNA clone:dda17n03, 5' ... 492 e-135 1
(BJ339366) Dictyostelium discoideum cDNA clone:dda65g04, 5' ... 486 e-133 1
(BJ393254) Dictyostelium discoideum cDNA clone:dds30n13, 5' ... 482 e-132 1
(BJ367255) Dictyostelium discoideum cDNA clone:ddc42a04, 5' ... 482 e-132 1
(BJ367385) Dictyostelium discoideum cDNA clone:ddc42d14, 5' ... 472 e-129 1
(AU071381) Dictyostelium discoideum slug cDNA, clone SSB366. 470 e-128 1
(BJ351640) Dictyostelium discoideum cDNA clone:dda44l01, 3' ... 470 e-128 1
(C84242) Dictyostelium discoideum slug cDNA, clone SSB371. 464 e-126 1
(BJ359543) Dictyostelium discoideum cDNA clone:ddc15e08, 5' ... 450 e-122 1
(C92560) Dictyostelium discoideum slug cDNA, clone SSE686. 446 e-121 1
(BJ381583) Dictyostelium discoideum cDNA clone:ddc42a04, 3' ... 442 e-120 1
(C92231) Dictyostelium discoideum slug cDNA, clone SSD268. 414 e-112 1
(AU262386) Dictyostelium discoideum vegetative cDNA clone:VS... 406 e-109 1
(BJ343787) Dictyostelium discoideum cDNA clone:dda17n03, 3' ... 387 e-108 2
(BJ373755) Dictyostelium discoideum cDNA clone:ddc4i20, 3' e... 351 1e-92 1
(BJ357899) Dictyostelium discoideum cDNA clone:dda65g04, 3' ... 327 2e-85 1
(BJ381747) Dictyostelium discoideum cDNA clone:ddc42d14, 3' ... 323 3e-84 1
(BJ405124) Dictyostelium discoideum cDNA clone:dds30n13, 3' ... 317 2e-82 1
(AC093203) Homo sapiens chromosome 5 clone CTC-262A8, WORKIN... 44 0.003 2
(CX084206) EHABN26TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX085129) EHAC122TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX083781) EHABG94TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX096891) EHAGZ04TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX093921) EHAFR78TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX094452) EHAFZ38TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX082083) EHAAR39TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX088947) EHADQ17TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX087427) EHACZ35TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX079928) EHAA321TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX098562) EHAHN46TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX098141) EHAHH39TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX090575) EHAEG27TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX093403) EHAFK64TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX086737) EHACO65TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX098542) EHAHN19TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX097511) EHAH790TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX085491) EHAC628TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX083129) EHAB729TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX095595) EHAGF85TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX094890) EHAG568TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX092236) EHAF408TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX089694) EHAE278TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX085701) EHAC925TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX082879) EHAB331TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX099205) EHAHW75TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX097339) EHAH543TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX092591) EHAF901TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX081615) EHAAK58TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX085587) EHAC765TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX095499) EHAGE55TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX084275) EHABO24TR E. histolytica Normalized cDNA library ... 44 0.003 2
(CX079927) EHAA321TF E. histolytica Normalized cDNA library ... 44 0.003 2
(CX086820) EHACQ17TR E. histolytica Normalized cDNA library ... 44 0.003 2
(AC073542) Homo sapiens chromosome 5 clone RP11-221L16, comp... 44 0.004 2
(AC175824) Pan troglodytes BAC clone CH251-171H18 from chrom... 44 0.004 2
(AC025473) Homo sapiens chromosome 5 clone RP11-183N2, WORKI... 44 0.006 3
(EI384421) POTCG21TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.025 2
(AC174487) Strongylocentrotus purpuratus clone R3-3120P7, WO... 38 0.038 2
(AC179668) Strongylocentrotus purpuratus clone R3-3001M21, *... 38 0.039 2
(CR936518) Zebrafish DNA sequence from clone DKEY-27E18 in l... 46 0.14 6
(BX530018) Zebrafish DNA sequence from clone DKEY-228B21 in ... 38 0.19 3
(AC211111) Chlorocebus aethiops clone CH252-27P8, WORKING DR... 44 0.23 2
(BX511163) Zebrafish DNA sequence from clone DKEY-176N7 in l... 48 0.24 1
(BX247880) Zebrafish DNA sequence from clone CH211-270J21 in... 48 0.24 1
(AC118642) Mus musculus chromosome 18, clone RP24-112L21, co... 48 0.24 1
(BX890552) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.24 1
(ER808834) POTL778TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.24 1
(DU964967) 235028 Tomato MboI BAC Library Solanum lycopersic... 48 0.24 1
(AC149843) Papio anubis clone RP41-113M9, WORKING DRAFT SEQU... 44 0.38 4
(AC198563) Papio anubis clone RP41-62E16, WORKING DRAFT SEQU... 44 0.44 3
(AC150024) Papio anubis clone RP41-457P18, WORKING DRAFT SEQ... 44 0.48 4
(AC157618) Atelerix albiventris clone LB4-417P13, WORKING DR... 32 0.52 2
(AX348523) Sequence 31 from Patent WO0202809. 40 0.59 2
(AX346294) Sequence 1365 from Patent WO0200928. 40 0.59 2
(AX344652) Sequence 77 from Patent WO0200927. 44 0.63 2
(AC095884) Rattus norvegicus clone CH230-11N6, *** SEQUENCIN... 42 0.72 3
(AC133985) Rattus norvegicus clone CH230-2D6, WORKING DRAFT ... 42 0.83 3
(AC229724) Medicago truncatula clone mth2-15f4, WORKING DRAF... 38 0.93 5
(BX276178) Zebrafish DNA sequence from clone CH211-245G9 in ... 46 0.94 1
(AM481919) Vitis vinifera contig VV78X033197.4, whole genome... 46 0.94 1
(AM437568) Vitis vinifera contig VV78X137511.8, whole genome... 46 0.94 1
(AC189308) Brassica rapa subsp. pekinensis clone KBrB034A02,... 46 0.94 1
(AX346286) Sequence 1357 from Patent WO0200928. 46 0.94 1
(DQ667829) Priscula sp. JJA-2006 16S ribosomal RNA gene, par... 46 0.94 1
(DQ667828) Priscula sp. JJA-2006 16S ribosomal RNA gene, par... 46 0.94 1
(AC177963) Strongylocentrotus purpuratus clone R3-3049I4, WO... 46 0.94 1
(DN355064) LIB3581-016-P1-K1-E10 LIB3581 Canis lupus familia... 46 0.94 1
(CP000550) Campylobacter jejuni subsp. jejuni 81-176 plasmid... 46 0.94 1
(AF226280) Campylobacter jejuni 81-176 virulence plasmid pVi... 46 0.94 1
(CU457801) M.truncatula DNA sequence from clone MTH2-38N16 o... 36 0.99 3
(CU468235) M.truncatula DNA sequence *** SEQUENCING IN PROGR... 36 0.99 3
(AC198008) Medicago truncatula chromosome 7 BAC clone mth2-6... 38 1.0 4
(ED748748) GM_WBb0114D12.f GM_WBb Glycine max genomic clone ... 40 1.1 2
(AJ294725) Astasia longa complete chloroplast genome. 44 1.2 3
(AX356493) Sequence 127 from Patent WO0181622. 38 1.5 4
(AX347026) Sequence 2097 from Patent WO0200928. 38 1.5 4
(AX345187) Sequence 258 from Patent WO0200928. 34 1.8 3
(DQ490653) Brachoria sp. 71 large subunit ribosomal RNA gene... 42 1.9 2
(AP006384) Lotus japonicus genomic DNA, chromosome 1, clone:... 38 2.0 4
(EA102719) Sequence 102 from patent US 7195870. 44 2.0 4
(AX323626) Sequence 114 from Patent WO0192565. 44 2.0 4
(AX277939) Sequence 102 from Patent WO0177375. 44 2.0 4
(CU424444) Zebrafish DNA sequence from clone CH211-149A19 in... 44 2.0 4
(DQ490680) Brachoria cedra voucher SPC000276 large subunit r... 42 2.0 2
(AC212652) Solanum lycopersicum chromosome 7 clone C07SLm007... 38 2.4 3
(AV598476) Bos taurus cDNA clone:E1CA038C04, 3' end, express... 34 2.4 2
(AC114070) Rattus norvegicus clone CH230-68B9, WORKING DRAFT... 38 2.6 4
(CU955898) Brassica napus GSS, clone JBnB178A13, end read, p... 40 2.9 2
(FB571361) Sequence 228 from Patent EP1865317. 36 3.0 5
(AB105451) Ornithodoros porcinus mitochondrial DNA, complete... 38 3.0 3
(AC121908) Mus musculus BAC clone RP24-176J10 from chromosom... 32 3.2 4
(AX346686) Sequence 1757 from Patent WO0200928. 38 3.4 3
(CZ266805) bes07_CH257_17G3_T7universal_CD704_072 CHORI-257 ... 34 3.5 2
(CR753873) Zebrafish DNA sequence from clone DKEY-145O23 in ... 44 3.7 1
(CR749168) Zebrafish DNA sequence from clone DKEY-10G2 in li... 44 3.7 1
(AC160133) Mus musculus BAC clone RP23-186M2 from chromosome... 44 3.7 1
(AP006647) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 3.7 1
(FB571360) Sequence 227 from Patent EP1865317. 44 3.7 1
(FB571304) Sequence 171 from Patent EP1865317. 44 3.7 1
(CS604747) Sequence 3733 from Patent WO2007039234. 44 3.7 1
(CS603099) Sequence 2085 from Patent WO2007039234. 44 3.7 1
(AC186214) Canis familiaris chromosome 14, clone XX-155A16, ... 44 3.7 1
(AP005355) Homo sapiens genomic DNA, chromosome 8q23, clone:... 44 3.7 1
(AL445428) Human DNA sequence from clone RP11-144C20 on chro... 44 3.7 1
(AL365360) Human DNA sequence from clone RP11-546N22 on chro... 44 3.7 1
(AC117495) Homo sapiens 12 BAC RP11-619O7 (Roswell Park Canc... 44 3.7 1
(AC103993) Homo sapiens chromosome 8, clone RP11-67H2, compl... 44 3.7 1
(AC034244) Homo sapiens chromosome 5 clone RP11-101B14, comp... 44 3.7 1
(AC018991) Homo sapiens, clone RP11-448E20, complete sequence. 44 3.7 1
(AC015866) Homo sapiens, clone RP11-59A1, complete sequence. 44 3.7 1
(AC137658) Canis lupus familiaris clone RP81-290O20, WORKING... 44 3.7 1
(AC064873) Homo sapiens chromosome 12 clone RP11-619O7, WORK... 44 3.7 1
(CU234112) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.7 1
(CU222530) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.7 1
(CU104723) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 3.7 1
(AP007647) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 3.7 1
(AC223381) Bos taurus clone CH240-420G7, WORKING DRAFT SEQUE... 44 3.7 1
(AC181471) Strongylocentrotus purpuratus clone R3-1111I15, W... 44 3.7 1
(AC022252) Homo sapiens clone RP11-28O12, WORKING DRAFT SEQU... 44 3.7 1
(BH526671) BOGNW31TR BOGN Brassica oleracea genomic clone BO... 44 3.7 1
(BH503042) BOHAE19TR BOHA Brassica oleracea genomic clone BO... 44 3.7 1
(AZ519201) RPCI-11-208J23.TV RPCI-11 Homo sapiens genomic cl... 44 3.7 1
(EJ482652) 1095403479587 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.7 1
(AG745412) Macaca fuscata fuscata DNA, clone: MSB2-208A16_F,... 44 3.7 1
(DV353789) NABXB51TO Aedes aegypti infected with Plasmodium ... 44 3.7 1
(DV353788) NABXB51TF Aedes aegypti infected with Plasmodium ... 44 3.7 1
(DV313012) NABOX58TRB Aedes aegypti infected with Brugia Mal... 44 3.7 1
(DV313011) NABOX58TF Aedes aegypti infected with Brugia Mala... 44 3.7 1
(DV275889) NAAHC82TF Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1
(DV275869) NAAHC82TR Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1
(DV274316) NAAH317TR Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1
(DV274315) NAAH317TF Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1
(DV251424) A2FNS80TV Aedes aegypti full length cDNA library,... 44 3.7 1
(DV251423) A2FNS80TO Aedes aegypti full length cDNA library,... 44 3.7 1
(DV248552) A2FM092TV Aedes aegypti full length cDNA library,... 44 3.7 1
(DV248550) A2FM092TO Aedes aegypti full length cDNA library,... 44 3.7 1
(CX098091) EHAHG72TR E. histolytica Normalized cDNA library ... 44 3.7 1
(CF996677) AGENCOURT_16392200 NIH_ZGC_7 Danio rerio cDNA clo... 44 3.7 1
(FF900067) CBWU32866.g1 Yutaka Satou unpublished cDNA librar... 44 3.7 1
(AX345888) Sequence 959 from Patent WO0200928. 32 4.1 3
(AC133747) Rattus norvegicus clone CH230-105L5, *** SEQUENCI... 40 4.4 2
(FI120111) MUGQ_CH252P493H13Sp6_CH0195_057 CHORI-252 Vervet ... 38 4.4 2
(B87481) RPCI11-29A13.TP RPCI-11 Homo sapiens genomic clone ... 34 4.8 2
(AX348899) Sequence 357 from Patent WO0202807. 40 4.9 2
(AX344490) Sequence 337 from Patent WO0200926. 40 4.9 2
(CW950608) TcB35.4_D07_SP6 Tribolium BAC library Tribolium c... 40 5.1 2
(AX458578) Sequence 124 from Patent WO0246454. 34 5.4 5
(AC168791) Strongylocentrotus purpuratus clone R3-13J6, WORK... 38 6.0 3
(CR376830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 6.1 5
(CU929567) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 6.4 4
(AC201628) Rhesus Macaque BAC CH250-206J22 () complete sequ... 32 6.8 2
(AC178850) Strongylocentrotus purpuratus clone R3-26H13, WOR... 32 6.8 2
(AC143183) Macaca mulatta clone CH250-269A8, *** SEQUENCING ... 32 7.0 2
(AM473596) Vitis vinifera, whole genome shotgun sequence, co... 32 7.1 2
(AC180439) Strongylocentrotus purpuratus clone R3-3102J01, W... 32 7.1 2
(CU469434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.1 3
(AC127773) Rattus norvegicus clone CH230-92I3, *** SEQUENCIN... 34 7.2 4
(CU571375) S.lycopersicum DNA sequence *** SEQUENCING IN PRO... 36 7.6 2
(AP009263) Solanum lycopersicum genomic DNA, chromosome 8, c... 36 8.1 5
(AC196855) Medicago truncatula chromosome 2 BAC clone mth2-1... 38 8.2 3
(AM427530) Vitis vinifera contig VV78X081087.5, whole genome... 36 8.4 2
(CU457764) S.lycopersicum DNA sequence from clone LE_HBa-230... 36 8.7 2

>(BJ360188) Dictyostelium discoideum cDNA clone:ddc4i20, 5' end,
single read.
Length = 258

Score = 492 bits (248), Expect = e-135
Identities = 248/248 (100%)
Strand = Plus / Plus


Query: 7 atttcaattcaattttactaaacacaacataaccttattataaaaacaaacatataaaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttcaattcaattttactaaacacaacataaccttattataaaaacaaacatataaaaa 60


Query: 67 tgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacatgtggac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacatgtggac 120


Query: 127 caaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgctcaagtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgctcaagtg 180


Query: 187 attgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaataaacaat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaataaacaat 240


Query: 247 tatcattc 254
||||||||
Sbjct: 241 tatcattc 248

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 416,284,769
Number of extensions: 30693168
Number of successful extensions: 2779802
Number of sequences better than 10.0: 187
Length of query: 386
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 363
Effective length of database: 96,507,600,660
Effective search space: 35032259039580
Effective search space used: 35032259039580
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Contig-U16342-1Q.Seq.d
(386 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AX647815_1(AX647815|pid:none) Sequence 2007 from Patent EP1270724. 49 7e-05
AX647837_1(AX647837|pid:none) Sequence 2029 from Patent EP1270724. 43 0.003
AX647833_1(AX647833|pid:none) Sequence 2025 from Patent EP1270724. 42 0.005
AX647579_1(AX647579|pid:none) Sequence 1771 from Patent EP1270724. 42 0.005
AK128694_1(AK128694|pid:none) Homo sapiens cDNA FLJ46861 fis, cl... 42 0.009
AX647813_1(AX647813|pid:none) Sequence 2005 from Patent EP1270724. 40 0.026
AJ005834_1(AJ005834|pid:none) Fucus vesiculosus mRNA for metallo... 40 0.034
AX647827_1(AX647827|pid:none) Sequence 2019 from Patent EP1270724. 39 0.044
AK124803_1(AK124803|pid:none) Homo sapiens cDNA FLJ42813 fis, cl... 39 0.044
AK129846_1(AK129846|pid:none) Homo sapiens cDNA FLJ26336 fis, cl... 39 0.058
AX647835_1(AX647835|pid:none) Sequence 2027 from Patent EP1270724. 39 0.075
AM040753_1(AM040753|pid:none) Glomus intraradices mRNA for metal... 38 0.099
(Q41669) RecName: Full=Metallothionein-like protein 1A; ... 33 0.11
AB176566_1(AB176566|pid:none) Lablab purpureus MET mRNA for type... 31 0.18
EU437399_1(EU437399|pid:none) Nesiohelix samarangae metallothion... 37 0.22
(Q10N03) RecName: Full=Metallothionein-like protein 1B; AltName:... 37 0.29
AX647665_1(AX647665|pid:none) Sequence 1857 from Patent EP1270724. 36 0.37
(P30571) RecName: Full=Metallothionein-like protein 1; ... 36 0.49
EU955226_1(EU955226|pid:none) Zea mays clone 1518662 metallothio... 36 0.49
AB026250_1(AB026250|pid:none) Lithospermum erythrorhizon mRNA fo... 36 0.49
EU958410_1(EU958410|pid:none) Zea mays clone 1689513 metallothio... 36 0.49
(Q38803) RecName: Full=Putative metallothionein-like protein 1B;... 35 0.64
AK034092_1(AK034092|pid:none) Mus musculus adult male diencephal... 35 0.64
AK124805_1(AK124805|pid:none) Homo sapiens cDNA FLJ42815 fis, cl... 35 0.64
AY601868_1(AY601868|pid:none) Cynodon dactylon MT-like protein m... 35 0.64
AB176564_1(AB176564|pid:none) Pisum sativum MEY mRNA for type 1 ... 33 0.66
AB176562_1(AB176562|pid:none) Vicia faba MET mRNA for type 1 met... 33 0.66
(Q41657) RecName: Full=Metallothionein-like protein type 2; &AB... 27 0.66
AJ237990_1(AJ237990|pid:none) Vitis vinifera mRNA for putative m... 35 0.83
(P20238) RecName: Full=Metallothionein-like protein 1; ... 35 0.83
AF399740_1(AF399740|pid:none) Helix pomatia Cd-metallothionein i... 35 0.83
DQ082855_1(DQ082855|pid:none) Eleusine indica metallothionein (M... 35 0.83
EU967303_1(EU967303|pid:none) Zea mays clone 301262 metallothion... 35 0.83
AB176565_1(AB176565|pid:none) Pisum sativum MET mRNA for type 2 ... 27 0.86
AJ555615_1(AJ555615|pid:none) Hordeum vulgare subsp. vulgare par... 35 1.1
(P43402) RecName: Full=Metallothionein-like protein LSC54; &AF4... 35 1.1
(P26571) RecName: Full=Metallothionein-like protein 1; ... 35 1.1
EF185127_1(EF185127|pid:none) Unio tumidus metallothionein mRNA,... 35 1.1
AF257465_1(AF257465|pid:none) Porteresia coarctata metallothione... 35 1.1
AF189766_1(AF189766|pid:none) Medicago sativa type 1 metallothio... 34 1.1
AB182918_1(AB182918|pid:none) Citrullus lanatus CLMT2 mRNA for t... 28 1.1
AF078911_1(AF078911|pid:none) Mesembryanthemum crystallinum clon... 34 1.4
AF078910_1(AF078910|pid:none) Mesembryanthemum crystallinum clon... 34 1.4
(O24528) RecName: Full=Metallothionein-like protein 1; ... 34 1.4
AY331704_1(AY331704|pid:none) Crassostrea virginica metallothion... 34 1.4
AF506977_1(AF506977|pid:none) Crassostrea virginica metallothion... 34 1.4
AY331702_1(AY331702|pid:none) Crassostrea virginica metallothion... 34 1.4
AY331707_1(AY331707|pid:none) Crassostrea virginica metallothion... 34 1.4
(P43399) RecName: Full=Metallothionein-like protein 1; AltName: ... 34 1.4
AF329968_1(AF329968|pid:none) Avicennia marina class I type 2 me... 28 1.4
AY085738_1(AY085738|pid:none) Arabidopsis thaliana clone 17539 m... 28 1.4
AY620987_1(AY620987|pid:none) Tamarix androssowii metallothionei... 28 1.8
AJ249603_1(AJ249603|pid:none) Posidonia oceanica partial mt2a ge... 27 1.8
AJ511344_1(AJ511344|pid:none) Hordeum vulgare subsp. vulgare par... 34 1.9
DQ059081_1(DQ059081|pid:none) Elsholtzia haichowensis metallothi... 34 1.9
AJ295157_1(AJ295157|pid:none) Crassostrea gigas partial mt3 gene... 34 1.9
AX647265_1(AX647265|pid:none) Sequence 1457 from Patent EP1270724. 34 1.9
AB193156_1(AB193156|pid:none) Ipomoea batatas mt1k mRNA for meta... 34 1.9
AK126213_1(AK126213|pid:none) Homo sapiens cDNA FLJ44225 fis, cl... 34 1.9
EU000310_1(EU000310|pid:none) Venerupis (Ruditapes) decussatus m... 34 1.9
AJ628140_1(AJ628140|pid:none) Posidonia oceanica mRNA for type 2... 27 2.4
AF200711_1(AF200711|pid:none) Brassica oleracea cultivar Green k... 33 2.4
AY331700_1(AY331700|pid:none) Crassostrea virginica metallothion... 33 2.4
EF471214_1(EF471214|pid:none) Brassica juncea metallothionein pr... 33 2.4
AY331701_1(AY331701|pid:none) Crassostrea virginica metallothion... 33 2.4
AY331705_1(AY331705|pid:none) Crassostrea virginica metallothion... 33 2.4
AB294238_1(AB294238|pid:none) Chloris virgata ChvMT1a mRNA for m... 33 2.4
EU954510_1(EU954510|pid:none) Zea mays clone 1469079 metallothio... 33 2.4
AY331699_1(AY331699|pid:none) Crassostrea virginica metallothion... 33 2.4
AY029512_1(AY029512|pid:none) Crassostrea rhizophorae metallothi... 33 2.4
GQ184290_1(GQ184290|pid:none) Hyriopsis cumingii metallothionein... 33 2.4
AY525635_1(AY525635|pid:none) Meretrix lusoria metallothionein m... 33 3.2
EF082550_1(EF082550|pid:none) Picea sitchensis clone WS0289_K22 ... 33 3.2
AB021790_1(AB021790|pid:none) Pyrus pyrifolia PPFRU16 mRNA for m... 33 3.2
AK127397_1(AK127397|pid:none) Homo sapiens cDNA FLJ45488 fis, cl... 33 3.2
AB193157_1(AB193157|pid:none) Ipomoea batatas mt2k mRNA for meta... 33 3.2
S59621(S59621)metallothionein isoform b, cadmium-binding - Arian... 33 3.2
AJ249687_1(AJ249687|pid:none) Ruditapes decussatus partial mRNA ... 33 3.2
(Q94550) RecName: Full=Metallothionein; Short=MT; &U67... 33 3.2
EF397700_1(EF397700|pid:none) Cerastoderma edule metallothionein... 33 3.2
AJ242657_1(AJ242657|pid:none) Crassostrea gigas MT gene for meta... 33 3.2
AB193247_1(AB193247|pid:none) Ipomoea batatas mt2k gene for meta... 33 3.2
(P55946) RecName: Full=Metallothionein; Short=MT; 33 3.2
FJ389580_1(FJ389580|pid:none) Pinctada maxima metallothionein mR... 33 3.2
AX647205_1(AX647205|pid:none) Sequence 1397 from Patent EP1270724. 33 4.1
EF081498_1(EF081498|pid:none) Picea sitchensis clone WS0299_M11 ... 33 4.1
EU039828_1(EU039828|pid:none) Limonium bicolor metallothionein m... 33 4.1
(Q40854) RecName: Full=Metallothionein-like protein EMB30; &BT0... 33 4.1
AF216698_8(AF216698|pid:none) Schistosoma mansoni mitochondrial ... 32 5.4
CR954203_358(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 32 5.4
(Q26496) RecName: Full=Metallothionein-B; Short=MTB; Fl... 32 5.4
CP000854_3390(CP000854|pid:none) Mycobacterium marinum M, comple... 32 5.4
AY566693_1(AY566693|pid:none) Xerophyta humilis clone HC27 metal... 32 5.4
AF036904_1(AF036904|pid:none) Perna viridis metallothionein mRNA... 32 5.4
AK128416_1(AK128416|pid:none) Homo sapiens cDNA FLJ46559 fis, cl... 32 5.4
(P55953) RecName: Full=Metallothionein; Short=MT; &Y08... 32 5.4
AF130788_1(AF130788|pid:none) Schistosoma mansoni cytochrome b (... 32 5.4
BT023201_1(BT023201|pid:none) Drosophila melanogaster IP03114 fu... 32 5.4
(Q26497) RecName: Full=Metallothionein-A; Short=MTA; Fl... 32 5.4
BT071126_1(BT071126|pid:none) Picea sitchensis clone WS02772_F07... 27 6.5
AY919870_1(AY919870|pid:none) Betula platyphylla metallothionein... 32 7.1
GQ205375_1(GQ205375|pid:none) Biomphalaria glabrata intermediate... 32 7.1
AF039002_1(AF039002|pid:none) Fritillaria agrestis clone AH3 met... 32 7.1
EF185126_1(EF185126|pid:none) Corbicula fluminea metallothionein... 32 7.1
AX647657_1(AX647657|pid:none) Sequence 1849 from Patent EP1270724. 32 7.1
AJ843995_1(AJ843995|pid:none) Plantago major mRNA for metallothi... 32 7.1
AX647441_1(AX647441|pid:none) Sequence 1633 from Patent EP1270724. 32 9.2
EF086467_1(EF086467|pid:none) Picea sitchensis clone WS02745_I17... 32 9.2
AX647729_1(AX647729|pid:none) Sequence 1921 from Patent EP1270724. 32 9.2
EU360938_1(EU360938|pid:none) Metaphire posthuma metallothionein... 32 9.2
EF144361_1(EF144361|pid:none) Populus trichocarpa clone PX0019_A... 32 9.2
AY594295_1(AY594295|pid:none) Populus trichocarpa x Populus delt... 32 9.2
(Q39511) RecName: Full=Metallothionein-like protein 1; ... 32 9.2
AX647727_1(AX647727|pid:none) Sequence 1919 from Patent EP1270724. 32 9.2
EF676475_1(EF676475|pid:none) Picea sitchensis clone WS02739_C19... 32 9.2
EU447159_1(EU447159|pid:none) Prosopis juliflora type 3 metallot... 32 9.2
FJ362363_14(FJ362363|pid:none) Caenorhabditis brenneri contig JD... 32 9.2
AY847454_1(AY847454|pid:none) Thlaspi caerulescens metallothione... 32 9.2

>AX647815_1(AX647815|pid:none) Sequence 2007 from Patent EP1270724.
Length = 362

Score = 48.5 bits (114), Expect = 7e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = -3

Query: 249 IIVYLLKVKFIFYRCKRCICNHLSIYRHIYSHCIHILVFPLVHMYIYHHIGKSLRIYMSV 70
+ +Y+ +++ C+C ++ IY HIY++ IH L +H+YIY HI L +Y+ V
Sbjct: 45 VYIYIYTHIYVYICVYICVCIYIYIYTHIYTY-IHTLN---IHIYIYTHIWNILTVYVCV 100

Query: 69 S-FLYVCFYNKVML 31
+LY C Y V +
Sbjct: 101 CVYLYTCIYMYVYI 114

Score = 35.0 bits (79), Expect = 0.83
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = -3

Query: 249 IIVYLLKVKFIF-YRCKRCICNHLSIYRHIYSHC-IHILVFPLVHMYIYHHIGKSLRIYM 76
I VY+ +I+ Y C + I H+ +Y +IY++ I++ V+ + MY+Y HI + IY+
Sbjct: 273 IRVYMYTYTYIYVYICIQHI--HIYMYIYIYTYIRIYVCVYMYIPMYVYIHIYTYICIYI 330

Query: 75 SVSFLYVCFYNKVM 34
+ + V Y +
Sbjct: 331 HMFHMCVYIYTHTL 344

Score = 34.7 bits (78), Expect = 1.1
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = -3

Query: 249 IIVYLLKVKFIFYRCKRCICNHLSIYRHIYSHCIHILVFPLVHMYIYHHIGKSLRIYMSV 70
+ VY+ I+ C+C IY HI+++ I V+ V++YIY HI + +Y+ V
Sbjct: 11 VCVYIYIYTCIYVCIYVCVC----IYIHIHTY---IRVYMCVYIYIYTHIYVYICVYICV 63

Query: 69 SFLYVCFYNKVMLCLVKLN 13
+Y+ Y + + LN
Sbjct: 64 C-IYIYIYTHIYTYIHTLN 81

Score = 33.9 bits (76), Expect = 1.9
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = -3

Query: 249 IIVYLLKVKFIFYRCKRCICNHL--SIYRHIYSHCIHILVFPLVHMYIYHHIGKSLRIYM 76
I VY+ +I CI H+ IY IY+ CI++ V+ V++++Y I + +Y+
Sbjct: 211 IYVYIYTRVYIRIHIYTCIYIHIYTCIYICIYT-CIYVYVYIYVYIHVYTRIYTCIYVYI 269

Query: 75 SV---SFLYVCFYNKVMLCL 25
V ++Y Y V +C+
Sbjct: 270 YVYIRVYMYTYTYIYVYICI 289

Score = 32.7 bits (73), Expect = 4.1
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -3

Query: 249 IIVYLLKVKFIFYRCKRCICNHLSIYRHIYSHCI-HILVFPLV---HMYIYHHIGKSLRI 82
+ VY+ ++ R CI ++ +Y +Y + +I V+ + H+Y+Y +I +RI
Sbjct: 247 VYVYIYVYIHVYTRIYTCIYVYIYVYIRVYMYTYTYIYVYICIQHIHIYMYIYIYTYIRI 306

Query: 81 YMSVSFLYVCFY 46
Y+ V ++Y+ Y
Sbjct: 307 YVCV-YMYIPMY 317

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 454,213,196
Number of extensions: 6784744
Number of successful extensions: 20690
Number of sequences better than 10.0: 118
Number of HSP's gapped: 20188
Number of HSP's successfully gapped: 194
Length of query: 128
Length of database: 1,061,185,681
Length adjustment: 93
Effective length of query: 35
Effective length of database: 757,220,017
Effective search space: 26502700595
Effective search space used: 26502700595
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.74 gvh: 0.32 alm: 0.66 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial

>> prediction for Contig-U16342-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0