Contig-U16342-1 |
Contig ID |
Contig-U16342-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
386 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1335367 |
End point |
1335669 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
13 |
Number of EST |
19 |
Link to clone list |
U16342 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 3.29 |
Homology vs DNA |
Query= Contig-U16342-1 (Contig-U16342-1Q) /CSM_Contig/Contig-U16342-1Q.Seq.d (386 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ360188) Dictyostelium discoideum cDNA clone:ddc4i20, 5' e... 492 e-135 1 (BJ335655) Dictyostelium discoideum cDNA clone:dda51i02, 5' ... 492 e-135 1 (BJ326607) Dictyostelium discoideum cDNA clone:dda17n03, 5' ... 492 e-135 1 (BJ339366) Dictyostelium discoideum cDNA clone:dda65g04, 5' ... 486 e-133 1 (BJ393254) Dictyostelium discoideum cDNA clone:dds30n13, 5' ... 482 e-132 1 (BJ367255) Dictyostelium discoideum cDNA clone:ddc42a04, 5' ... 482 e-132 1 (BJ367385) Dictyostelium discoideum cDNA clone:ddc42d14, 5' ... 472 e-129 1 (AU071381) Dictyostelium discoideum slug cDNA, clone SSB366. 470 e-128 1 (BJ351640) Dictyostelium discoideum cDNA clone:dda44l01, 3' ... 470 e-128 1 (C84242) Dictyostelium discoideum slug cDNA, clone SSB371. 464 e-126 1 (BJ359543) Dictyostelium discoideum cDNA clone:ddc15e08, 5' ... 450 e-122 1 (C92560) Dictyostelium discoideum slug cDNA, clone SSE686. 446 e-121 1 (BJ381583) Dictyostelium discoideum cDNA clone:ddc42a04, 3' ... 442 e-120 1 (C92231) Dictyostelium discoideum slug cDNA, clone SSD268. 414 e-112 1 (AU262386) Dictyostelium discoideum vegetative cDNA clone:VS... 406 e-109 1 (BJ343787) Dictyostelium discoideum cDNA clone:dda17n03, 3' ... 387 e-108 2 (BJ373755) Dictyostelium discoideum cDNA clone:ddc4i20, 3' e... 351 1e-92 1 (BJ357899) Dictyostelium discoideum cDNA clone:dda65g04, 3' ... 327 2e-85 1 (BJ381747) Dictyostelium discoideum cDNA clone:ddc42d14, 3' ... 323 3e-84 1 (BJ405124) Dictyostelium discoideum cDNA clone:dds30n13, 3' ... 317 2e-82 1 (AC093203) Homo sapiens chromosome 5 clone CTC-262A8, WORKIN... 44 0.003 2 (CX084206) EHABN26TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX085129) EHAC122TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX083781) EHABG94TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX096891) EHAGZ04TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX093921) EHAFR78TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX094452) EHAFZ38TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX082083) EHAAR39TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX088947) EHADQ17TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX087427) EHACZ35TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX079928) EHAA321TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX098562) EHAHN46TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX098141) EHAHH39TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX090575) EHAEG27TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX093403) EHAFK64TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX086737) EHACO65TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX098542) EHAHN19TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX097511) EHAH790TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX085491) EHAC628TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX083129) EHAB729TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX095595) EHAGF85TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX094890) EHAG568TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX092236) EHAF408TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX089694) EHAE278TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX085701) EHAC925TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX082879) EHAB331TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX099205) EHAHW75TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX097339) EHAH543TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX092591) EHAF901TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX081615) EHAAK58TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX085587) EHAC765TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX095499) EHAGE55TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX084275) EHABO24TR E. histolytica Normalized cDNA library ... 44 0.003 2 (CX079927) EHAA321TF E. histolytica Normalized cDNA library ... 44 0.003 2 (CX086820) EHACQ17TR E. histolytica Normalized cDNA library ... 44 0.003 2 (AC073542) Homo sapiens chromosome 5 clone RP11-221L16, comp... 44 0.004 2 (AC175824) Pan troglodytes BAC clone CH251-171H18 from chrom... 44 0.004 2 (AC025473) Homo sapiens chromosome 5 clone RP11-183N2, WORKI... 44 0.006 3 (EI384421) POTCG21TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.025 2 (AC174487) Strongylocentrotus purpuratus clone R3-3120P7, WO... 38 0.038 2 (AC179668) Strongylocentrotus purpuratus clone R3-3001M21, *... 38 0.039 2 (CR936518) Zebrafish DNA sequence from clone DKEY-27E18 in l... 46 0.14 6 (BX530018) Zebrafish DNA sequence from clone DKEY-228B21 in ... 38 0.19 3 (AC211111) Chlorocebus aethiops clone CH252-27P8, WORKING DR... 44 0.23 2 (BX511163) Zebrafish DNA sequence from clone DKEY-176N7 in l... 48 0.24 1 (BX247880) Zebrafish DNA sequence from clone CH211-270J21 in... 48 0.24 1 (AC118642) Mus musculus chromosome 18, clone RP24-112L21, co... 48 0.24 1 (BX890552) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.24 1 (ER808834) POTL778TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.24 1 (DU964967) 235028 Tomato MboI BAC Library Solanum lycopersic... 48 0.24 1 (AC149843) Papio anubis clone RP41-113M9, WORKING DRAFT SEQU... 44 0.38 4 (AC198563) Papio anubis clone RP41-62E16, WORKING DRAFT SEQU... 44 0.44 3 (AC150024) Papio anubis clone RP41-457P18, WORKING DRAFT SEQ... 44 0.48 4 (AC157618) Atelerix albiventris clone LB4-417P13, WORKING DR... 32 0.52 2 (AX348523) Sequence 31 from Patent WO0202809. 40 0.59 2 (AX346294) Sequence 1365 from Patent WO0200928. 40 0.59 2 (AX344652) Sequence 77 from Patent WO0200927. 44 0.63 2 (AC095884) Rattus norvegicus clone CH230-11N6, *** SEQUENCIN... 42 0.72 3 (AC133985) Rattus norvegicus clone CH230-2D6, WORKING DRAFT ... 42 0.83 3 (AC229724) Medicago truncatula clone mth2-15f4, WORKING DRAF... 38 0.93 5 (BX276178) Zebrafish DNA sequence from clone CH211-245G9 in ... 46 0.94 1 (AM481919) Vitis vinifera contig VV78X033197.4, whole genome... 46 0.94 1 (AM437568) Vitis vinifera contig VV78X137511.8, whole genome... 46 0.94 1 (AC189308) Brassica rapa subsp. pekinensis clone KBrB034A02,... 46 0.94 1 (AX346286) Sequence 1357 from Patent WO0200928. 46 0.94 1 (DQ667829) Priscula sp. JJA-2006 16S ribosomal RNA gene, par... 46 0.94 1 (DQ667828) Priscula sp. JJA-2006 16S ribosomal RNA gene, par... 46 0.94 1 (AC177963) Strongylocentrotus purpuratus clone R3-3049I4, WO... 46 0.94 1 (DN355064) LIB3581-016-P1-K1-E10 LIB3581 Canis lupus familia... 46 0.94 1 (CP000550) Campylobacter jejuni subsp. jejuni 81-176 plasmid... 46 0.94 1 (AF226280) Campylobacter jejuni 81-176 virulence plasmid pVi... 46 0.94 1 (CU457801) M.truncatula DNA sequence from clone MTH2-38N16 o... 36 0.99 3 (CU468235) M.truncatula DNA sequence *** SEQUENCING IN PROGR... 36 0.99 3 (AC198008) Medicago truncatula chromosome 7 BAC clone mth2-6... 38 1.0 4 (ED748748) GM_WBb0114D12.f GM_WBb Glycine max genomic clone ... 40 1.1 2 (AJ294725) Astasia longa complete chloroplast genome. 44 1.2 3 (AX356493) Sequence 127 from Patent WO0181622. 38 1.5 4 (AX347026) Sequence 2097 from Patent WO0200928. 38 1.5 4 (AX345187) Sequence 258 from Patent WO0200928. 34 1.8 3 (DQ490653) Brachoria sp. 71 large subunit ribosomal RNA gene... 42 1.9 2 (AP006384) Lotus japonicus genomic DNA, chromosome 1, clone:... 38 2.0 4 (EA102719) Sequence 102 from patent US 7195870. 44 2.0 4 (AX323626) Sequence 114 from Patent WO0192565. 44 2.0 4 (AX277939) Sequence 102 from Patent WO0177375. 44 2.0 4 (CU424444) Zebrafish DNA sequence from clone CH211-149A19 in... 44 2.0 4 (DQ490680) Brachoria cedra voucher SPC000276 large subunit r... 42 2.0 2 (AC212652) Solanum lycopersicum chromosome 7 clone C07SLm007... 38 2.4 3 (AV598476) Bos taurus cDNA clone:E1CA038C04, 3' end, express... 34 2.4 2 (AC114070) Rattus norvegicus clone CH230-68B9, WORKING DRAFT... 38 2.6 4 (CU955898) Brassica napus GSS, clone JBnB178A13, end read, p... 40 2.9 2 (FB571361) Sequence 228 from Patent EP1865317. 36 3.0 5 (AB105451) Ornithodoros porcinus mitochondrial DNA, complete... 38 3.0 3 (AC121908) Mus musculus BAC clone RP24-176J10 from chromosom... 32 3.2 4 (AX346686) Sequence 1757 from Patent WO0200928. 38 3.4 3 (CZ266805) bes07_CH257_17G3_T7universal_CD704_072 CHORI-257 ... 34 3.5 2 (CR753873) Zebrafish DNA sequence from clone DKEY-145O23 in ... 44 3.7 1 (CR749168) Zebrafish DNA sequence from clone DKEY-10G2 in li... 44 3.7 1 (AC160133) Mus musculus BAC clone RP23-186M2 from chromosome... 44 3.7 1 (AP006647) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 3.7 1 (FB571360) Sequence 227 from Patent EP1865317. 44 3.7 1 (FB571304) Sequence 171 from Patent EP1865317. 44 3.7 1 (CS604747) Sequence 3733 from Patent WO2007039234. 44 3.7 1 (CS603099) Sequence 2085 from Patent WO2007039234. 44 3.7 1 (AC186214) Canis familiaris chromosome 14, clone XX-155A16, ... 44 3.7 1 (AP005355) Homo sapiens genomic DNA, chromosome 8q23, clone:... 44 3.7 1 (AL445428) Human DNA sequence from clone RP11-144C20 on chro... 44 3.7 1 (AL365360) Human DNA sequence from clone RP11-546N22 on chro... 44 3.7 1 (AC117495) Homo sapiens 12 BAC RP11-619O7 (Roswell Park Canc... 44 3.7 1 (AC103993) Homo sapiens chromosome 8, clone RP11-67H2, compl... 44 3.7 1 (AC034244) Homo sapiens chromosome 5 clone RP11-101B14, comp... 44 3.7 1 (AC018991) Homo sapiens, clone RP11-448E20, complete sequence. 44 3.7 1 (AC015866) Homo sapiens, clone RP11-59A1, complete sequence. 44 3.7 1 (AC137658) Canis lupus familiaris clone RP81-290O20, WORKING... 44 3.7 1 (AC064873) Homo sapiens chromosome 12 clone RP11-619O7, WORK... 44 3.7 1 (CU234112) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.7 1 (CU222530) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.7 1 (CU104723) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 3.7 1 (AP007647) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 3.7 1 (AC223381) Bos taurus clone CH240-420G7, WORKING DRAFT SEQUE... 44 3.7 1 (AC181471) Strongylocentrotus purpuratus clone R3-1111I15, W... 44 3.7 1 (AC022252) Homo sapiens clone RP11-28O12, WORKING DRAFT SEQU... 44 3.7 1 (BH526671) BOGNW31TR BOGN Brassica oleracea genomic clone BO... 44 3.7 1 (BH503042) BOHAE19TR BOHA Brassica oleracea genomic clone BO... 44 3.7 1 (AZ519201) RPCI-11-208J23.TV RPCI-11 Homo sapiens genomic cl... 44 3.7 1 (EJ482652) 1095403479587 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.7 1 (AG745412) Macaca fuscata fuscata DNA, clone: MSB2-208A16_F,... 44 3.7 1 (DV353789) NABXB51TO Aedes aegypti infected with Plasmodium ... 44 3.7 1 (DV353788) NABXB51TF Aedes aegypti infected with Plasmodium ... 44 3.7 1 (DV313012) NABOX58TRB Aedes aegypti infected with Brugia Mal... 44 3.7 1 (DV313011) NABOX58TF Aedes aegypti infected with Brugia Mala... 44 3.7 1 (DV275889) NAAHC82TF Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1 (DV275869) NAAHC82TR Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1 (DV274316) NAAH317TR Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1 (DV274315) NAAH317TF Aedes aegypti - Fat Bodies Normalized (... 44 3.7 1 (DV251424) A2FNS80TV Aedes aegypti full length cDNA library,... 44 3.7 1 (DV251423) A2FNS80TO Aedes aegypti full length cDNA library,... 44 3.7 1 (DV248552) A2FM092TV Aedes aegypti full length cDNA library,... 44 3.7 1 (DV248550) A2FM092TO Aedes aegypti full length cDNA library,... 44 3.7 1 (CX098091) EHAHG72TR E. histolytica Normalized cDNA library ... 44 3.7 1 (CF996677) AGENCOURT_16392200 NIH_ZGC_7 Danio rerio cDNA clo... 44 3.7 1 (FF900067) CBWU32866.g1 Yutaka Satou unpublished cDNA librar... 44 3.7 1 (AX345888) Sequence 959 from Patent WO0200928. 32 4.1 3 (AC133747) Rattus norvegicus clone CH230-105L5, *** SEQUENCI... 40 4.4 2 (FI120111) MUGQ_CH252P493H13Sp6_CH0195_057 CHORI-252 Vervet ... 38 4.4 2 (B87481) RPCI11-29A13.TP RPCI-11 Homo sapiens genomic clone ... 34 4.8 2 (AX348899) Sequence 357 from Patent WO0202807. 40 4.9 2 (AX344490) Sequence 337 from Patent WO0200926. 40 4.9 2 (CW950608) TcB35.4_D07_SP6 Tribolium BAC library Tribolium c... 40 5.1 2 (AX458578) Sequence 124 from Patent WO0246454. 34 5.4 5 (AC168791) Strongylocentrotus purpuratus clone R3-13J6, WORK... 38 6.0 3 (CR376830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 6.1 5 (CU929567) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 6.4 4 (AC201628) Rhesus Macaque BAC CH250-206J22 () complete sequ... 32 6.8 2 (AC178850) Strongylocentrotus purpuratus clone R3-26H13, WOR... 32 6.8 2 (AC143183) Macaca mulatta clone CH250-269A8, *** SEQUENCING ... 32 7.0 2 (AM473596) Vitis vinifera, whole genome shotgun sequence, co... 32 7.1 2 (AC180439) Strongylocentrotus purpuratus clone R3-3102J01, W... 32 7.1 2 (CU469434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.1 3 (AC127773) Rattus norvegicus clone CH230-92I3, *** SEQUENCIN... 34 7.2 4 (CU571375) S.lycopersicum DNA sequence *** SEQUENCING IN PRO... 36 7.6 2 (AP009263) Solanum lycopersicum genomic DNA, chromosome 8, c... 36 8.1 5 (AC196855) Medicago truncatula chromosome 2 BAC clone mth2-1... 38 8.2 3 (AM427530) Vitis vinifera contig VV78X081087.5, whole genome... 36 8.4 2 (CU457764) S.lycopersicum DNA sequence from clone LE_HBa-230... 36 8.7 2
>(BJ360188) Dictyostelium discoideum cDNA clone:ddc4i20, 5' end, single read. Length = 258
Score = 492 bits (248), Expect = e-135 Identities = 248/248 (100%) Strand = Plus / Plus
Query: 7 atttcaattcaattttactaaacacaacataaccttattataaaaacaaacatataaaaa 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttcaattcaattttactaaacacaacataaccttattataaaaacaaacatataaaaa 60
Query: 67 tgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacatgtggac 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgacacactcatgtaaatgcggagactcttgccaatgtggtgataaatgtacatgtggac 120
Query: 127 caaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgctcaagtg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caaaggaaacaccaaaatgtggatgcagtgactgtaaatgtggcgataaatgctcaagtg 180
Query: 187 attgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaataaacaat 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 attgcaaatgcacctcttgcacctgtaaaaaataaattttacctttaataaataaacaat 240
Query: 247 tatcattc 254 |||||||| Sbjct: 241 tatcattc 248
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 416,284,769 Number of extensions: 30693168 Number of successful extensions: 2779802 Number of sequences better than 10.0: 187 Length of query: 386 Length of database: 98,766,808,389 Length adjustment: 23 Effective length of query: 363 Effective length of database: 96,507,600,660 Effective search space: 35032259039580 Effective search space used: 35032259039580 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
3 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
4 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |