Contig-U16340-1
Contig ID Contig-U16340-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Contig-U16340-1Q.Seq.d
TTGATAATTGAAAGGTGATTTCAAATATTGAATAAAAGTTGTACATAAAG
TTATCATTGTTGTTAAATCATCTAAATAAAACTCTGAATCAAACGGTGAA
GCTAAAACACCACATAAAAATGATTTATAATCATCAAATGAACAATGATA
TGGATCCCATTGAATTGGTAAAATGATTGATTTTTGTTGAGCTTGAACTT
GTTTATTTTTATAAGGATATTTTTCAATTACAATTAAATCTCTTTTATCA
AAAATATTTTTAATTTTTGATAAAGTTGAATTTTGTAAAGAACCTGATAA
AGTTGTGAATAGAATTGGATAAGATTGAGGTGTTGATTTATTAATCTCTA
ACCAATATTCAATTTGTTGACGTGATGGTGGTGGTGTACCAGAAGATAAA
TTCAATTCAAACATTGATGGACAAATTATAAATTCGATATTGTTTTTATA
ATGTTTATACAATTGAGTCAAGAAAGCGGTTTGGGTTTGTGAATAAGTTT
TTGAATTGTTAACTTCACTCTTTGTTGAATTTGGTGCACAAATTGGTAAC
GTAAATGAATCATTCCAACCACTTGGTAATATTAAACTAAATGATTTAAT
T----------CAGACAAGAATTGGTTGGAATGAATGTTTCCTATTATTT
CGCAAATGAAAAAATGGACTCAAAATGTTCAAATGCCAAGACCAACGTTT
ATGCTGAACCACTTCATGTCTGTGATGAAGATAACCAAATCAAGGTTTCC
TACAATTATTTAACTTACCAAGATGCAATTAATGATCTTCCAATGGATTC
TTGTAATGAAGTGATTTTCAATGGAGGTTGTGAAGAGAATTATATTATCA
CTTCCATTCTTAAAGGAACTTGTAGCCCAATTAAAGTCAATGACACTGAG
GCTTGGACTTATTCAACTTGTGATGAAAATTCTATGCTAAGCTATATTTG
TAGTGAACCAACTTGTTTCATTGGTAACTGTTATGCCATTCCAAATGTTT
ACAAAAATAGTACTCAATGTGTTCCAGGTCGTGATCTTGACGGTAATATT
GCAGATGGTATCTATTATAAATTTGTTCCAAAATTAAAAAGTCAACCAAA
ACCATCTTCACCAACCC

Gap gap included
Contig length 1107
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3794223
End point 3793376
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U16340
List of clone(s)

est1=CFE696F,1,601
est2=CFE696Z,602,1107
Translated Amino Acid sequence
**lkgdfky*ikvvhkviivvkssk*nsesngeaktphkndl*ssneq*ygsh*igkmid
fc*a*tclfl*gyfsitiksllskiflifdkvefckepdkvvnrig*d*gvdllisnqys
ic*rdgggvpedkfnsnidgqiinsilfl*clyn*vkkavwvce*VFELLTSLFVEFGAQ
IGNVNESFQPLGNIKLNDLI---

---RQELVGMNVSYYFANEKMDSKCSNAKTNVYAEPLHVCDEDNQIKVSYNYLTYQDAIN
DLPMDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPT
CFIGNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFVPKLKSQPKPSSPT


Translated Amino Acid sequence (All Frames)
Frame A:
liier*fqilnksct*syhcc*ii*ikl*ikr*s*ntt*k*fiiik*tmiwiplnw*nd*
fllslnlfifiriffnyn*isfiknifnf**s*il*rt**sce*nwirlrc*finl*pif
nllt*wwwctrr*iqfkh*wtnykfdivfimfiqlsqesglgl*isf*ivnftlc*iwct
nw*rk*iipttw*y*tk*fn---

---qtrigwnecfllfrk*knglkmfkcqdqrlc*ttscl**r*pnqgflqlfnlprcn*
*ssngfl**sdfqwrl*relyyhfhs*rnl*pn*sq*h*gldlfnl**kfyaklyl**tn
lfhw*llchskclqk*ysmcsrs*s*r*ycrwyll*icskikkstktiftn

Frame B:
**lkgdfky*ikvvhkviivvkssk*nsesngeaktphkndl*ssneq*ygsh*igkmid
fc*a*tclfl*gyfsitiksllskiflifdkvefckepdkvvnrig*d*gvdllisnqys
ic*rdgggvpedkfnsnidgqiinsilfl*clyn*vkkavwvce*VFELLTSLFVEFGAQ
IGNVNESFQPLGNIKLNDLI---

---RQELVGMNVSYYFANEKMDSKCSNAKTNVYAEPLHVCDEDNQIKVSYNYLTYQDAIN
DLPMDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPT
CFIGNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFVPKLKSQPKPSSPT

Frame C:
dn*kvisnie*klyiklslllnhlnktlnqtvklkhhikmiynhqmnndmdpielvk*li
fvelelvyfykdifqlqlnlfyqkyf*fliklnfvknlikl*ieldkievliy*sltniq
fvdvmvvvyqkinsiqtlmdkl*irycfynvytiesrkrfgfvnkflnc*lhsllnlvhk
lvt*mnhsnhlviln*mi*---

---dknwle*mfpiisqmkkwtqnvqmprptfmlnhfmsvmkitksrfptii*ltkmqlm
ifqwilvmk*fsmevvkriilslpflkelvaqlksmtlrlgliqlvmkilc*aifvvnql
vslvtvmpfqmftkivlnvfqvviltvilqmvsiinlfqn*kvnqnhlhqp

own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16340-1 (Contig-U16340-1Q)
/CSM_Contig/Contig-U16340-1Q.Seq.d
(1117 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Conti... 2155 0.0
Contig-U16341-1 (Contig-U16341-1Q) /CSM_Contig/Conti... 1003 0.0
Contig-U01163-1 (Contig-U01163-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U16291-1 (Contig-U16291-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U15699-1 (Contig-U15699-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U12860-1 (Contig-U12860-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U04646-1 (Contig-U04646-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U14497-1 (Contig-U14497-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U12782-1 (Contig-U12782-1Q) /CSM_Contig/Conti... 36 0.11

>Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Contig-U16340-1Q.Seq.d
Length = 1117

Score = 2155 bits (1087), Expect = 0.0
Identities = 1117/1117 (100%)
Strand = Plus / Plus


Query: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60


Query: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120


Query: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180


Query: 181 tttttgttgagcttgaacttgtttatttttataaggatatttttcaattacaattaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttttgttgagcttgaacttgtttatttttataaggatatttttcaattacaattaaatc 240


Query: 241 tcttttatcaaaaatatttttaatttttgataaagttgaattttgtaaagaacctgataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttttatcaaaaatatttttaatttttgataaagttgaattttgtaaagaacctgataa 300


Query: 301 agttgtgaatagaattggataagattgaggtgttgatttattaatctctaaccaatattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agttgtgaatagaattggataagattgaggtgttgatttattaatctctaaccaatattc 360


Query: 361 aatttgttgacgtgatggtggtggtgtaccagaagataaattcaattcaaacattgatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatttgttgacgtgatggtggtggtgtaccagaagataaattcaattcaaacattgatgg 420


Query: 421 acaaattataaattcgatattgtttttataatgtttatacaattgagtcaagaaagcggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaaattataaattcgatattgtttttataatgtttatacaattgagtcaagaaagcggt 480


Query: 481 ttgggtttgtgaataagtttttgaattgttaacttcactctttgttgaatttggtgcaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgggtttgtgaataagtttttgaattgttaacttcactctttgttgaatttggtgcaca 540


Query: 541 aattggtaacgtaaatgaatcattccaaccacttggtaatattaaactaaatgatttaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aattggtaacgtaaatgaatcattccaaccacttggtaatattaaactaaatgatttaat 600


Query: 601 tnnnnnnnnnncagacaagaattggttggaatgaatgtttcctattatttcgcaaatgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tnnnnnnnnnncagacaagaattggttggaatgaatgtttcctattatttcgcaaatgaa 660


Query: 661 aaaatggactcaaaatgttcaaatgccaagaccaacgtttatgctgaaccacttcatgtc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaatggactcaaaatgttcaaatgccaagaccaacgtttatgctgaaccacttcatgtc 720


Query: 721 tgtgatgaagataaccaaatcaaggtttcctacaattatttaacttaccaagatgcaatt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgtgatgaagataaccaaatcaaggtttcctacaattatttaacttaccaagatgcaatt 780


Query: 781 aatgatcttccaatggattcttgtaatgaagtgattttcaatggaggttgtgaagagaat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aatgatcttccaatggattcttgtaatgaagtgattttcaatggaggttgtgaagagaat 840


Query: 841 tatattatcacttccattcttaaaggaacttgtagcccaattaaagtcaatgacactgag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tatattatcacttccattcttaaaggaacttgtagcccaattaaagtcaatgacactgag 900


Query: 901 gcttggacttattcaacttgtgatgaaaattctatgctaagctatatttgtagtgaacca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gcttggacttattcaacttgtgatgaaaattctatgctaagctatatttgtagtgaacca 960


Query: 961 acttgtttcattggtaactgttatgccattccaaatgtttacaaaaatagtactcaatgt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 acttgtttcattggtaactgttatgccattccaaatgtttacaaaaatagtactcaatgt 1020


Query: 1021 gttccaggtcgtgatcttgacggtaatattgcagatggtatctattataaatttgttcca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gttccaggtcgtgatcttgacggtaatattgcagatggtatctattataaatttgttcca 1080


Query: 1081 aaattaaaaagtcaaccaaaaccatcttcaccaaccc 1117
|||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaattaaaaagtcaaccaaaaccatcttcaccaaccc 1117


>Contig-U16341-1 (Contig-U16341-1Q) /CSM_Contig/Contig-U16341-1Q.Seq.d
Length = 1040

Score = 1003 bits (506), Expect = 0.0
Identities = 506/506 (100%)
Strand = Plus / Plus


Query: 612 cagacaagaattggttggaatgaatgtttcctattatttcgcaaatgaaaaaatggactc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cagacaagaattggttggaatgaatgtttcctattatttcgcaaatgaaaaaatggactc 422


Query: 672 aaaatgttcaaatgccaagaccaacgtttatgctgaaccacttcatgtctgtgatgaaga 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaatgttcaaatgccaagaccaacgtttatgctgaaccacttcatgtctgtgatgaaga 482


Query: 732 taaccaaatcaaggtttcctacaattatttaacttaccaagatgcaattaatgatcttcc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taaccaaatcaaggtttcctacaattatttaacttaccaagatgcaattaatgatcttcc 542


Query: 792 aatggattcttgtaatgaagtgattttcaatggaggttgtgaagagaattatattatcac 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatggattcttgtaatgaagtgattttcaatggaggttgtgaagagaattatattatcac 602


Query: 852 ttccattcttaaaggaacttgtagcccaattaaagtcaatgacactgaggcttggactta 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttccattcttaaaggaacttgtagcccaattaaagtcaatgacactgaggcttggactta 662


Query: 912 ttcaacttgtgatgaaaattctatgctaagctatatttgtagtgaaccaacttgtttcat 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttcaacttgtgatgaaaattctatgctaagctatatttgtagtgaaccaacttgtttcat 722


Query: 972 tggtaactgttatgccattccaaatgtttacaaaaatagtactcaatgtgttccaggtcg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tggtaactgttatgccattccaaatgtttacaaaaatagtactcaatgtgttccaggtcg 782


Query: 1032 tgatcttgacggtaatattgcagatggtatctattataaatttgttccaaaattaaaaag 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgatcttgacggtaatattgcagatggtatctattataaatttgttccaaaattaaaaag 842


Query: 1092 tcaaccaaaaccatcttcaccaaccc 1117
||||||||||||||||||||||||||
Sbjct: 843 tcaaccaaaaccatcttcaccaaccc 868


>Contig-U01163-1 (Contig-U01163-1Q) /CSM_Contig/Contig-U01163-1Q.Seq.d
Length = 211

Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 250 aaaaatatttttaatttttg 269
||||||||||||||||||||
Sbjct: 37 aaaaatatttttaatttttg 18


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,765
Number of Sequences: 8402
Number of extensions: 31765
Number of successful extensions: 3358
Number of sequences better than 10.0: 348
length of query: 1117
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1101
effective length of database: 7,941,110
effective search space: 8743162110
effective search space used: 8743162110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.29
Homology vs DNA
Query= Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Contig-U16340-1Q.Seq.d
(1117 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ358695) Dictyostelium discoideum cDNA clone:ddc10o24, 5' ... 660 0.0 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1003 0.0 1
(C93261) Dictyostelium discoideum slug cDNA, clone SSM887. 1003 0.0 1
(C92978) Dictyostelium discoideum slug cDNA, clone SSF407. 1003 0.0 1
(C91160) Dictyostelium discoideum slug cDNA, clone SSJ752. 1003 0.0 1
(C91058) Dictyostelium discoideum slug cDNA, clone SSJ433. 1003 0.0 1
(C90754) Dictyostelium discoideum slug cDNA, clone SSJ110. 1003 0.0 1
(C90019) Dictyostelium discoideum slug cDNA, clone SSG101. 1003 0.0 1
(C84079) Dictyostelium discoideum slug cDNA, clone SSC709. 1003 0.0 1
(C84004) Dictyostelium discoideum slug cDNA, clone SSC221. 1003 0.0 1
(AU038168) Dictyostelium discoideum slug cDNA, clone SSH364. 991 0.0 1
(C91176) Dictyostelium discoideum slug cDNA, clone SSJ773. 987 0.0 1
(C92619) Dictyostelium discoideum slug cDNA, clone SSF532. 979 0.0 1
(BJ372022) Dictyostelium discoideum cDNA clone:ddc10o24, 3' ... 973 0.0 1
(C90746) Dictyostelium discoideum slug cDNA, clone SSJ102. 971 0.0 1
(AU037838) Dictyostelium discoideum slug cDNA, clone SSE356. 959 0.0 1
(AU039086) Dictyostelium discoideum slug cDNA, clone SSM368. 954 0.0 1
(C92468) Dictyostelium discoideum slug cDNA, clone SSE610. 946 0.0 1
(AU038579) Dictyostelium discoideum slug cDNA, clone SSH892. 930 0.0 1
(C92449) Dictyostelium discoideum slug cDNA, clone SSE560. 922 0.0 1
(C90957) Dictyostelium discoideum slug cDNA, clone SSJ352. 515 0.0 5
(BJ384928) Dictyostelium discoideum cDNA clone:ddc51a09, 3' ... 914 0.0 1
(AU037976) Dictyostelium discoideum slug cDNA, clone SSH116. 799 0.0 2
(AU038184) Dictyostelium discoideum slug cDNA, clone SSH382. 882 0.0 1
(BJ379480) Dictyostelium discoideum cDNA clone:ddc35b05, 3' ... 870 0.0 1
(AU039110) Dictyostelium discoideum slug cDNA, clone SSM401. 860 0.0 1
(C90762) Dictyostelium discoideum slug cDNA, clone SSJ118. 718 0.0 4
(AU038272) Dictyostelium discoideum slug cDNA, clone SSH504. 852 0.0 1
(AU038328) Dictyostelium discoideum slug cDNA, clone SSH569. 848 0.0 1
(BJ357329) Dictyostelium discoideum cDNA clone:dda63o06, 3' ... 831 0.0 1
(BJ376669) Dictyostelium discoideum cDNA clone:ddc29o07, 3' ... 815 0.0 1
(AU037500) Dictyostelium discoideum slug cDNA, clone SSD714. 811 0.0 1
(C84069) Dictyostelium discoideum slug cDNA, clone SSC622. 777 0.0 2
(C90933) Dictyostelium discoideum slug cDNA, clone SSJ325. 563 0.0 7
(AU038050) Dictyostelium discoideum slug cDNA, clone SSH204. 729 0.0 2
(AU037480) Dictyostelium discoideum slug cDNA, clone SSD687. 769 0.0 1
(C90814) Dictyostelium discoideum slug cDNA, clone SSJ179. 456 0.0 6
(C89784) Dictyostelium discoideum slug cDNA, clone SSG841. 767 0.0 1
(AU037476) Dictyostelium discoideum slug cDNA, clone SSD682. 757 0.0 2
(C89882) Dictyostelium discoideum slug cDNA, clone SSG574. 704 0.0 1
(C90407) Dictyostelium discoideum slug cDNA, clone SSI367. 563 e-156 1
(C89866) Dictyostelium discoideum slug cDNA, clone SSG554. 549 e-152 1
(AU037171) Dictyostelium discoideum slug cDNA, clone SSB562. 535 e-147 1
(AU061734) Dictyostelium discoideum slug cDNA, clone SLF601. 529 e-146 1
(C90669) Dictyostelium discoideum slug cDNA, clone SSJ601. 525 e-144 1
(AU039501) Dictyostelium discoideum slug cDNA, clone SLA751. 502 e-137 1
(C91111) Dictyostelium discoideum slug cDNA, clone SSJ585. 480 e-131 1
(AU074669) Dictyostelium discoideum slug cDNA, clone SSL486. 476 e-130 1
(AU073281) Dictyostelium discoideum slug cDNA, clone SSG565. 476 e-130 1
(AU071670) Dictyostelium discoideum slug cDNA, clone SSC240. 476 e-130 1
(C93319) Dictyostelium discoideum slug cDNA, clone SSM620. 466 e-127 1
(C93214) Dictyostelium discoideum slug cDNA, clone SSM833. 456 e-124 1
(AU038599) Dictyostelium discoideum slug cDNA, clone SSL231. 440 e-119 1
(AU071675) Dictyostelium discoideum slug cDNA, clone SSC247. 369 2e-97 1
(AU053108) Dictyostelium discoideum slug cDNA, clone SLF708. 355 2e-93 1
(C92450) Dictyostelium discoideum slug cDNA, clone SSE561. 345 2e-90 1
(AU053057) Dictyostelium discoideum slug cDNA, clone SLF601. 319 1e-82 1
(AU038876) Dictyostelium discoideum slug cDNA, clone SSL585. 250 1e-61 1
(AU061337) Dictyostelium discoideum slug cDNA, clone SLD785. 133 1e-48 2
(AU073479) Dictyostelium discoideum slug cDNA, clone SSH334. 103 1e-17 1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 34 0.041 8
(EK394316) 1095469514344 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.046 1
(FH953501) CHO_OF6759xo04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.71 1
(FH285966) CHO_OF4193xb22f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.71 1
(CU640366) Podospora anserina genomic DNA chromosome 2, supe... 32 1.2 2
(DX457203) MAMAB54TR MA4 Musa acuminata genomic clone MA4-3J... 44 1.9 2
(ET844146) CHO_OF442xi08r1.ab1 CHO_OF Nicotiana tabacum geno... 40 2.7 2
(ER844898) POTN677TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.7 2
(ET844056) CHO_OF442xg06f2.ab1 CHO_OF Nicotiana tabacum geno... 40 2.7 2
(EY298556) CAWX13977.fwd CAWX Helobdella robusta Primary Ear... 44 2.8 2
(AC170751) Mus musculus BAC clone CH25-484K21 from chromosom... 46 2.8 1
(AC146701) Mus musculus chromosome 10, clone RP24-142C15, co... 46 2.8 1
(AC129816) Rattus norvegicus clone CH230-22B3, WORKING DRAFT... 46 2.8 1
(AC119310) Rattus norvegicus clone CH230-357J5, WORKING DRAF... 46 2.8 1
(AC116191) Rattus norvegicus clone CH230-222B21, *** SEQUENC... 46 2.8 1
(AC115419) Rattus norvegicus clone CH230-112P18, WORKING DRA... 46 2.8 1
(ER283741) 1092343445941 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.8 1
(ED081699) AUAC-aam15a09.b1 Ascaris suum whole genome shotgu... 46 2.8 1
(ED076167) AUAC-aav27e11.b1 Ascaris suum whole genome shotgu... 46 2.8 1
(ED072664) AUAC-aax05a02.b1 Ascaris suum whole genome shotgu... 46 2.8 1
(CN374438) rzhswab0_005207 Silkworm posterior silkgland libr... 46 2.8 1
(EY342759) CAWZ12097.fwd CAWZ Helobdella robusta Primary Lat... 44 2.9 2
(EJ177766) 1092344107464 Global-Ocean-Sampling_GS-27-01-01-1... 36 2.9 2
(FK297586) 454GmaGlobSeed32218 Soybean Seeds Containing Glob... 36 2.9 2
(AC211289) Oryza glaberrima clone OG_BBa0090P20, *** SEQUENC... 36 3.2 5
(DL174241) Methods for Identifying the Target of a Compound ... 38 3.5 2
(AX489433) Sequence 6733 from Patent WO02053728. 38 3.5 2
(AR546167) Sequence 1298 from patent US 6747137. 38 3.5 2
(CU571241) M.truncatula DNA sequence from clone MTH2-56A22 o... 30 5.1 11
(CP000757) Vibrio sp. 09022 plasmid p09022A, complete sequence. 34 5.9 2
(AC217699) Solanum tuberosum chromosome 1 clone RH051I12, **... 44 5.9 6
(AC212817) Zea mays chromosome 4 clone CH201-338J7; ZMMBBc03... 38 6.3 2
(AC232457) Brassica rapa subsp. pekinensis clone KBrB019J08,... 38 6.6 6
(AC135755) Rattus norvegicus clone CH230-77B16, *** SEQUENCI... 34 6.9 8
(EC097384) AAE00000984 Acetabularia acetabulum Non-normalize... 40 9.4 2

>(BJ358695) Dictyostelium discoideum cDNA clone:ddc10o24, 5' end,
single read.
Length = 601

Score = 660 bits (333), Expect(2) = 0.0
Identities = 333/333 (100%)
Strand = Plus / Plus


Query: 269 gataaagttgaattttgtaaagaacctgataaagttgtgaatagaattggataagattga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gataaagttgaattttgtaaagaacctgataaagttgtgaatagaattggataagattga 328


Query: 329 ggtgttgatttattaatctctaaccaatattcaatttgttgacgtgatggtggtggtgta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggtgttgatttattaatctctaaccaatattcaatttgttgacgtgatggtggtggtgta 388


Query: 389 ccagaagataaattcaattcaaacattgatggacaaattataaattcgatattgttttta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccagaagataaattcaattcaaacattgatggacaaattataaattcgatattgttttta 448


Query: 449 taatgtttatacaattgagtcaagaaagcggtttgggtttgtgaataagtttttgaattg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 taatgtttatacaattgagtcaagaaagcggtttgggtttgtgaataagtttttgaattg 508


Query: 509 ttaacttcactctttgttgaatttggtgcacaaattggtaacgtaaatgaatcattccaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttaacttcactctttgttgaatttggtgcacaaattggtaacgtaaatgaatcattccaa 568


Query: 569 ccacttggtaatattaaactaaatgatttaatt 601
|||||||||||||||||||||||||||||||||
Sbjct: 569 ccacttggtaatattaaactaaatgatttaatt 601

Score = 398 bits (201), Expect(2) = 0.0
Identities = 201/201 (100%)
Strand = Plus / Plus


Query: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60


Query: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120


Query: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180


Query: 181 tttttgttgagcttgaacttg 201
|||||||||||||||||||||
Sbjct: 181 tttttgttgagcttgaacttg 201

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,358,289,953
Number of extensions: 82772921
Number of successful extensions: 6563665
Number of sequences better than 10.0: 95
Length of query: 1117
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1093
Effective length of database: 96,409,374,237
Effective search space: 105375446041041
Effective search space used: 105375446041041
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Contig-U16340-1Q.Seq.d
(1117 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116305_86(AC116305|pid:none) Dictyostelium discoideum chromoso... 333 9e-90
AC114263_37(AC114263|pid:none) Dictyostelium discoideum chromoso... 36 2.8
AY710429_21(AY710429|pid:none) Cryptococcus gattii strain E566 M... 35 3.7
AF542530_26(AF542530|pid:none) Cryptococcus neoformans var. neof... 35 3.7
AC115684_8(AC115684|pid:none) Dictyostelium discoideum chromosom... 35 3.7
CP001393_946(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 35 4.8
(Q2IA00) RecName: Full=Sperm flagellar protein 2; AltName: Full=... 34 8.3

>AC116305_86(AC116305|pid:none) Dictyostelium discoideum chromosome 2
map 1005175-1418323 strain AX4, complete sequence.
Length = 253

Score = 333 bits (853), Expect = 9e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Frame = +1

Query: 613 RQELVGMNVSYYFANEKMDSKCSNAKTNVYAEPLHVCDEDNQIKVSYNYLTYQDAINDLP 792
RQELVGMNVSYYFANEKMDSKCSNAKTNVYAEPLHVCDEDNQIKVSYNYLTYQDAINDLP
Sbjct: 50 RQELVGMNVSYYFANEKMDSKCSNAKTNVYAEPLHVCDEDNQIKVSYNYLTYQDAINDLP 109

Query: 793 MDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPTCFI 972
MDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPTCFI
Sbjct: 110 MDSCNEVIFNGGCEENYIITSILKGTCSPIKVNDTEAWTYSTCDENSMLSYICSEPTCFI 169

Query: 973 GNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFV 1077
GNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFV
Sbjct: 170 GNCYAIPNVYKNSTQCVPGRDLDGNIADGIYYKFV 204

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,795,713,939
Number of extensions: 37290949
Number of successful extensions: 89811
Number of sequences better than 10.0: 7
Number of HSP's gapped: 89734
Number of HSP's successfully gapped: 7
Length of query: 372
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 242
Effective length of database: 636,287,441
Effective search space: 153981560722
Effective search space used: 153981560722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.51 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U16340-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0