Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U16340-1 (Contig-U16340-1Q) /CSM_Contig/Contig-U16340-1Q.Seq.d (1117 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ358695) Dictyostelium discoideum cDNA clone:ddc10o24, 5' ... 660 0.0 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1003 0.0 1 (C93261) Dictyostelium discoideum slug cDNA, clone SSM887. 1003 0.0 1 (C92978) Dictyostelium discoideum slug cDNA, clone SSF407. 1003 0.0 1 (C91160) Dictyostelium discoideum slug cDNA, clone SSJ752. 1003 0.0 1 (C91058) Dictyostelium discoideum slug cDNA, clone SSJ433. 1003 0.0 1 (C90754) Dictyostelium discoideum slug cDNA, clone SSJ110. 1003 0.0 1 (C90019) Dictyostelium discoideum slug cDNA, clone SSG101. 1003 0.0 1 (C84079) Dictyostelium discoideum slug cDNA, clone SSC709. 1003 0.0 1 (C84004) Dictyostelium discoideum slug cDNA, clone SSC221. 1003 0.0 1 (AU038168) Dictyostelium discoideum slug cDNA, clone SSH364. 991 0.0 1 (C91176) Dictyostelium discoideum slug cDNA, clone SSJ773. 987 0.0 1 (C92619) Dictyostelium discoideum slug cDNA, clone SSF532. 979 0.0 1 (BJ372022) Dictyostelium discoideum cDNA clone:ddc10o24, 3' ... 973 0.0 1 (C90746) Dictyostelium discoideum slug cDNA, clone SSJ102. 971 0.0 1 (AU037838) Dictyostelium discoideum slug cDNA, clone SSE356. 959 0.0 1 (AU039086) Dictyostelium discoideum slug cDNA, clone SSM368. 954 0.0 1 (C92468) Dictyostelium discoideum slug cDNA, clone SSE610. 946 0.0 1 (AU038579) Dictyostelium discoideum slug cDNA, clone SSH892. 930 0.0 1 (C92449) Dictyostelium discoideum slug cDNA, clone SSE560. 922 0.0 1 (C90957) Dictyostelium discoideum slug cDNA, clone SSJ352. 515 0.0 5 (BJ384928) Dictyostelium discoideum cDNA clone:ddc51a09, 3' ... 914 0.0 1 (AU037976) Dictyostelium discoideum slug cDNA, clone SSH116. 799 0.0 2 (AU038184) Dictyostelium discoideum slug cDNA, clone SSH382. 882 0.0 1 (BJ379480) Dictyostelium discoideum cDNA clone:ddc35b05, 3' ... 870 0.0 1 (AU039110) Dictyostelium discoideum slug cDNA, clone SSM401. 860 0.0 1 (C90762) Dictyostelium discoideum slug cDNA, clone SSJ118. 718 0.0 4 (AU038272) Dictyostelium discoideum slug cDNA, clone SSH504. 852 0.0 1 (AU038328) Dictyostelium discoideum slug cDNA, clone SSH569. 848 0.0 1 (BJ357329) Dictyostelium discoideum cDNA clone:dda63o06, 3' ... 831 0.0 1 (BJ376669) Dictyostelium discoideum cDNA clone:ddc29o07, 3' ... 815 0.0 1 (AU037500) Dictyostelium discoideum slug cDNA, clone SSD714. 811 0.0 1 (C84069) Dictyostelium discoideum slug cDNA, clone SSC622. 777 0.0 2 (C90933) Dictyostelium discoideum slug cDNA, clone SSJ325. 563 0.0 7 (AU038050) Dictyostelium discoideum slug cDNA, clone SSH204. 729 0.0 2 (AU037480) Dictyostelium discoideum slug cDNA, clone SSD687. 769 0.0 1 (C90814) Dictyostelium discoideum slug cDNA, clone SSJ179. 456 0.0 6 (C89784) Dictyostelium discoideum slug cDNA, clone SSG841. 767 0.0 1 (AU037476) Dictyostelium discoideum slug cDNA, clone SSD682. 757 0.0 2 (C89882) Dictyostelium discoideum slug cDNA, clone SSG574. 704 0.0 1 (C90407) Dictyostelium discoideum slug cDNA, clone SSI367. 563 e-156 1 (C89866) Dictyostelium discoideum slug cDNA, clone SSG554. 549 e-152 1 (AU037171) Dictyostelium discoideum slug cDNA, clone SSB562. 535 e-147 1 (AU061734) Dictyostelium discoideum slug cDNA, clone SLF601. 529 e-146 1 (C90669) Dictyostelium discoideum slug cDNA, clone SSJ601. 525 e-144 1 (AU039501) Dictyostelium discoideum slug cDNA, clone SLA751. 502 e-137 1 (C91111) Dictyostelium discoideum slug cDNA, clone SSJ585. 480 e-131 1 (AU074669) Dictyostelium discoideum slug cDNA, clone SSL486. 476 e-130 1 (AU073281) Dictyostelium discoideum slug cDNA, clone SSG565. 476 e-130 1 (AU071670) Dictyostelium discoideum slug cDNA, clone SSC240. 476 e-130 1 (C93319) Dictyostelium discoideum slug cDNA, clone SSM620. 466 e-127 1 (C93214) Dictyostelium discoideum slug cDNA, clone SSM833. 456 e-124 1 (AU038599) Dictyostelium discoideum slug cDNA, clone SSL231. 440 e-119 1 (AU071675) Dictyostelium discoideum slug cDNA, clone SSC247. 369 2e-97 1 (AU053108) Dictyostelium discoideum slug cDNA, clone SLF708. 355 2e-93 1 (C92450) Dictyostelium discoideum slug cDNA, clone SSE561. 345 2e-90 1 (AU053057) Dictyostelium discoideum slug cDNA, clone SLF601. 319 1e-82 1 (AU038876) Dictyostelium discoideum slug cDNA, clone SSL585. 250 1e-61 1 (AU061337) Dictyostelium discoideum slug cDNA, clone SLD785. 133 1e-48 2 (AU073479) Dictyostelium discoideum slug cDNA, clone SSH334. 103 1e-17 1 (AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 34 0.041 8 (EK394316) 1095469514344 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.046 1 (FH953501) CHO_OF6759xo04f1.ab1 CHO_OF6 Nicotiana tabacum ge... 48 0.71 1 (FH285966) CHO_OF4193xb22f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.71 1 (CU640366) Podospora anserina genomic DNA chromosome 2, supe... 32 1.2 2 (DX457203) MAMAB54TR MA4 Musa acuminata genomic clone MA4-3J... 44 1.9 2 (ET844146) CHO_OF442xi08r1.ab1 CHO_OF Nicotiana tabacum geno... 40 2.7 2 (ER844898) POTN677TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 2.7 2 (ET844056) CHO_OF442xg06f2.ab1 CHO_OF Nicotiana tabacum geno... 40 2.7 2 (EY298556) CAWX13977.fwd CAWX Helobdella robusta Primary Ear... 44 2.8 2 (AC170751) Mus musculus BAC clone CH25-484K21 from chromosom... 46 2.8 1 (AC146701) Mus musculus chromosome 10, clone RP24-142C15, co... 46 2.8 1 (AC129816) Rattus norvegicus clone CH230-22B3, WORKING DRAFT... 46 2.8 1 (AC119310) Rattus norvegicus clone CH230-357J5, WORKING DRAF... 46 2.8 1 (AC116191) Rattus norvegicus clone CH230-222B21, *** SEQUENC... 46 2.8 1 (AC115419) Rattus norvegicus clone CH230-112P18, WORKING DRA... 46 2.8 1 (ER283741) 1092343445941 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.8 1 (ED081699) AUAC-aam15a09.b1 Ascaris suum whole genome shotgu... 46 2.8 1 (ED076167) AUAC-aav27e11.b1 Ascaris suum whole genome shotgu... 46 2.8 1 (ED072664) AUAC-aax05a02.b1 Ascaris suum whole genome shotgu... 46 2.8 1 (CN374438) rzhswab0_005207 Silkworm posterior silkgland libr... 46 2.8 1 (EY342759) CAWZ12097.fwd CAWZ Helobdella robusta Primary Lat... 44 2.9 2 (EJ177766) 1092344107464 Global-Ocean-Sampling_GS-27-01-01-1... 36 2.9 2 (FK297586) 454GmaGlobSeed32218 Soybean Seeds Containing Glob... 36 2.9 2 (AC211289) Oryza glaberrima clone OG_BBa0090P20, *** SEQUENC... 36 3.2 5 (DL174241) Methods for Identifying the Target of a Compound ... 38 3.5 2 (AX489433) Sequence 6733 from Patent WO02053728. 38 3.5 2 (AR546167) Sequence 1298 from patent US 6747137. 38 3.5 2 (CU571241) M.truncatula DNA sequence from clone MTH2-56A22 o... 30 5.1 11 (CP000757) Vibrio sp. 09022 plasmid p09022A, complete sequence. 34 5.9 2 (AC217699) Solanum tuberosum chromosome 1 clone RH051I12, **... 44 5.9 6 (AC212817) Zea mays chromosome 4 clone CH201-338J7; ZMMBBc03... 38 6.3 2 (AC232457) Brassica rapa subsp. pekinensis clone KBrB019J08,... 38 6.6 6 (AC135755) Rattus norvegicus clone CH230-77B16, *** SEQUENCI... 34 6.9 8 (EC097384) AAE00000984 Acetabularia acetabulum Non-normalize... 40 9.4 2
>(BJ358695) Dictyostelium discoideum cDNA clone:ddc10o24, 5' end, single read. Length = 601
Score = 660 bits (333), Expect(2) = 0.0 Identities = 333/333 (100%) Strand = Plus / Plus
Query: 269 gataaagttgaattttgtaaagaacctgataaagttgtgaatagaattggataagattga 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 gataaagttgaattttgtaaagaacctgataaagttgtgaatagaattggataagattga 328
Query: 329 ggtgttgatttattaatctctaaccaatattcaatttgttgacgtgatggtggtggtgta 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 ggtgttgatttattaatctctaaccaatattcaatttgttgacgtgatggtggtggtgta 388
Query: 389 ccagaagataaattcaattcaaacattgatggacaaattataaattcgatattgttttta 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 ccagaagataaattcaattcaaacattgatggacaaattataaattcgatattgttttta 448
Query: 449 taatgtttatacaattgagtcaagaaagcggtttgggtttgtgaataagtttttgaattg 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 taatgtttatacaattgagtcaagaaagcggtttgggtttgtgaataagtttttgaattg 508
Query: 509 ttaacttcactctttgttgaatttggtgcacaaattggtaacgtaaatgaatcattccaa 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 ttaacttcactctttgttgaatttggtgcacaaattggtaacgtaaatgaatcattccaa 568
Query: 569 ccacttggtaatattaaactaaatgatttaatt 601 ||||||||||||||||||||||||||||||||| Sbjct: 569 ccacttggtaatattaaactaaatgatttaatt 601
Score = 398 bits (201), Expect(2) = 0.0 Identities = 201/201 (100%) Strand = Plus / Plus
Query: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttgataattgaaaggtgatttcaaatattgaataaaagttgtacataaagttatcattgt 60
Query: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgttaaatcatctaaataaaactctgaatcaaacggtgaagctaaaacaccacataaaaa 120
Query: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgatttataatcatcaaatgaacaatgatatggatcccattgaattggtaaaatgattga 180
Query: 181 tttttgttgagcttgaacttg 201 ||||||||||||||||||||| Sbjct: 181 tttttgttgagcttgaacttg 201
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,358,289,953 Number of extensions: 82772921 Number of successful extensions: 6563665 Number of sequences better than 10.0: 95 Length of query: 1117 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 1093 Effective length of database: 96,409,374,237 Effective search space: 105375446041041 Effective search space used: 105375446041041 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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