Contig-U16339-1 |
Contig ID |
Contig-U16339-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
2379 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
6319426 |
End point |
6321784 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
120 |
Number of EST |
216 |
Link to clone list |
U16339 |
List of clone(s) |
est1=AHE881F,-9,599 est2=CHL645F,1,182 est3=CHL211F,49,233 est4=CHK651F,58,460 est5=AFO689F,114,328 est6=AFH423F,129,658 est7=CHB367F,129,650 est8=AFA132F,133,789 est9=AHM143F,133,761 est10=CFG675F,134,624 est11=CFI382F,134,719 est12=CHK108F,134,624 est13=SFE580F,134,712 est14=CHN501F,140,658 est15=CHD857F,142,730 est16=SFC821F,145,687 est17=AFJ217F,146,680 est18=AFN721F,146,683 est19=AFN819F,146,776 est20=CFB615F,146,698 est21=CFC342F,146,774 est22=CFH607F,146,770 est23=CFH882F,146,775 est24=CFI825F,146,775 est25=CHG286F,146,601 est26=CHK105F,146,680 est27=CHK640F,146,690 est28=CHM569F,146,598 est29=CHQ439F,146,598 est30=CHR539F,146,685 est31=SFC238F,146,777 est32=SFE512F,146,775 est33=SFJ369F,146,680 est34=CFD483F,147,770 est35=CFH752F,147,651 est36=SFB719F,147,621 est37=CFB478F,148,648 est38=CFD382F,148,775 est39=CHI312F,148,685 est40=AFF401F,150,805 est41=AFG158F,150,770 est42=AFO211F,150,777 est43=AHB366F,150,692 est44=CFD645F,150,771 est45=CFE768F,150,630 est46=CFE869F,150,775 est47=CHK526F,150,680 est48=SFJ650F,150,774 est49=CHQ776F,151,758 est50=AFE468F,154,774 est51=AHC862F,154,686 est52=AHF801F,154,687 est53=CHF540F,154,689 est54=AFD492F,157,427 est55=AFF466F,157,783 est56=CHM882F,157,685 est57=AHC179F,158,756 est58=SFI187F,160,685 est59=AFF877F,162,776 est60=AFG659F,162,774 est61=AFH652F,163,775 est62=CFI725F,163,773 est63=CHQ285F,163,645 est64=AFD766F,169,775 est65=CHO353F,171,710 est66=AHL508F,172,776 est67=CFF243F,172,770 est68=CHB717F,174,715 est69=SFG787F,175,679 est70=SSL509F,176,799 est71=AFC361F,177,649 est72=AFC605F,177,769 est73=CFB438F,177,830 est74=CHA592F,177,732 est75=CHS123F,177,795 est76=SFK608F,177,686 est77=AFF795F,181,774 est78=CFJ567F,181,774 est79=CHO238F,181,776 est80=CFK455F,184,776 est81=AFG420F,185,898 est82=AHO510F,185,688 est83=SFF452F,185,546 est84=CHN714F,186,798 est85=CHM133F,188,684 est86=AFB568F,189,769 est87=CFD105F,191,771 est88=AHB503F,203,760 est89=CHB817F,213,351 est90=CFA256F,215,688 est91=SSH694F,226,515 est92=SFC769F,244,850 est93=CHC496F,245,776 est94=SFK556F,267,652 est95=CFB307F,324,657 est96=CFJ243F,394,1016 est97=CFC233F,400,758 est98=AFB833F,433,1069 est99=CFF343F,553,1184 est100=SFF738F,578,1178 est101=SFC431F,918,1326 est102=SFL275F,920,1407 est103=SLI403F,1032,1362 est104=SFE257F,1109,1563 est105=CHA192Z,1128,1730 est106=SSH243F,1372,1902 est107=AFF466Z,1429,2189 est108=CFJ243Z,1429,2209 est109=CHE865Z,1429,2092 est110=CHQ776Z,1429,2082 est111=AFJ217Z,1430,2152 est112=AHM143Z,1430,2193 est113=CHN714Z,1430,2082 est114=CFF343Z,1431,2203 est115=CFJ567Z,1432,2207 est116=CFE869Z,1433,2203 est117=AFD766Z,1438,2152 est118=CFI825Z,1438,2207 est119=SFC238Z,1438,2146 est120=SFE512Z,1438,2187 est121=AFG659Z,1439,2189 est122=AFN819Z,1439,2152 est123=CFI725Z,1439,2207 est124=CFK455Z,1439,2210 est125=CHI312Z,1439,2207 est126=CHM569Z,1439,2185 est127=SFG243Z,1439,2104 est128=AFH652Z,1441,2152 est129=CHM133Z,1441,2207 est130=SFK608Z,1441,2187 est131=AFE468Z,1442,2189 est132=AFI729Z,1442,2189 est133=CHB367Z,1443,2207 est134=CHM882Z,1443,2073 est135=AHC862Z,1444,2061 est136=CHP846Z,1444,1691 est137=CFC342Z,1445,2201 est138=AFB568Z,1457,2152 est139=CFC233Z,1460,2104 est140=AFO689Z,1463,2152 est141=CFB307Z,1464,2167 est142=AFC605Z,1465,2152 est143=AHF801Z,1465,2193 est144=AHB366Z,1466,2193 est145=SFG787Z,1466,2185 est146=AHB503Z,1467,2193 est147=AHC179Z,1467,2189 est148=SFI187Z,1467,2088 est149=AFB833Z,1469,2152 est150=CFH882Z,1469,2167 est151=CHG286Z,1469,2082 est152=CHL211Z,1469,2118 est153=CHQ439Z,1469,2183 est154=CHR539Z,1469,2118 est155=CFF243Z,1470,2201 est156=CHF540Z,1470,2207 est157=CHL864Z,1470,2209 est158=CHQ285Z,1470,2184 est159=CFI382Z,1478,2167 est160=SFJ650Z,1478,2191 est161=AFH423Z,1480,2189 est162=CHD857Z,1485,2156 est163=AHE881Z,1486,2193 est164=CHB717Z,1486,2161 est165=AFF401Z,1490,2171 est166=CHL645Z,1490,2207 est167=CHN501Z,1492,2076 est168=SFF738Z,1492,2185 est169=CHC496Z,1495,2209 est170=AFA132Z,1507,2189 est171=AFN721Z,1508,2061 est172=CFE768Z,1508,2188 est173=AFG158Z,1511,2188 est174=SFC769Z,1511,2150 est175=CHS123Z,1513,2120 est176=SFL275Z,1514,2150 est177=CFB615Z,1526,2167 est178=AFF877Z,1530,2174 est179=SFC821Z,1530,2150 est180=SFJ369Z,1536,2185 est181=CFH752Z,1541,2167 est182=SFB719Z,1541,2150 est183=SFC431Z,1541,2187 est184=CFD105Z,1552,2159 est185=CHF301Z,1552,1771 est186=SFF452Z,1553,2150 est187=AFG420Z,1562,2175 est188=CFB438Z,1567,2168 est189=CFH607Z,1575,2167 est190=AFD503Z,1601,2070 est191=CHK651Z,1606,2210 est192=CFG675Z,1608,2167 est193=CFA256Z,1609,2098 est194=AFD492Z,1611,2193 est195=AFF795Z,1612,2178 est196=CHQ314Z,1612,1785 est197=CFB478Z,1615,2168 est198=SFE257Z,1624,2150 est199=CFD382Z,1625,2202 est200=CHK526Z,1626,2210 est201=AFC361Z,1627,2171 est202=SSD792Z,1627,2225 est203=CHK640Z,1629,2207 est204=CHO353Z,1647,2167 est205=CHK105Z,1654,2209 est206=CHK108Z,1682,2101 est207=SSC471E,1697,2362 est208=AFB367Z,1741,2112 est209=SLI403Z,1752,2218 est210=CFD483Z,1807,2189 est211=SFB184Z,1911,2168 est212=SSL509Z,1925,2227 est213=SLA393E,1958,2224 est214=SSK672E,1977,2373 est215=CFD645Z,2074,2188 est216=SSH694Z,2120,2379
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 3.28 |
Homology vs DNA |
Query= Contig-U16339-1 (Contig-U16339-1Q) /CSM_Contig/Contig-U16339-1Q.Seq.d (2379 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ340385) Dictyostelium discoideum cDNA clone:dda12j20, 3' ... 1263 0.0 1 (BJ323993) Dictyostelium discoideum cDNA clone:dda4b10, 5' e... 1255 0.0 1 (BJ358774) Dictyostelium discoideum cDNA clone:ddc11f11, 5' ... 1253 0.0 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 1249 0.0 2 (BJ361907) Dictyostelium discoideum cDNA clone:ddc19e12, 5' ... 1235 0.0 1 (BJ387111) Dictyostelium discoideum cDNA clone:dds12l09, 5' ... 1189 0.0 1 (BJ350703) Dictyostelium discoideum cDNA clone:dda40b22, 3' ... 1187 0.0 3 (BJ371966) Dictyostelium discoideum cDNA clone:ddc10h17, 3' ... 1178 0.0 2 (BJ342752) Dictyostelium discoideum cDNA clone:dda1o07, 3' e... 1178 0.0 3 (BJ375310) Dictyostelium discoideum cDNA clone:ddc18b08, 3' ... 1174 0.0 3 (BJ378067) Dictyostelium discoideum cDNA clone:ddc26p24, 3' ... 1166 0.0 2 (AU037565) Dictyostelium discoideum slug cDNA, clone SSD792. 1152 0.0 1 (BJ401857) Dictyostelium discoideum cDNA clone:dds19j17, 3' ... 1136 0.0 3 (BJ401120) Dictyostelium discoideum cDNA clone:dds22o02, 3' ... 1136 0.0 3 (BJ398424) Dictyostelium discoideum cDNA clone:dds12l09, 3' ... 1136 0.0 3 (BJ397897) Dictyostelium discoideum cDNA clone:dds10g03, 3' ... 1136 0.0 2 (BJ382894) Dictyostelium discoideum cDNA clone:ddc46a09, 3' ... 1136 0.0 4 (BJ382737) Dictyostelium discoideum cDNA clone:ddc45p16, 3' ... 1136 0.0 3 (BJ382624) Dictyostelium discoideum cDNA clone:ddc45i12, 3' ... 1136 0.0 4 (BJ378989) Dictyostelium discoideum cDNA clone:ddc33o09, 3' ... 1136 0.0 4 (BJ376227) Dictyostelium discoideum cDNA clone:ddc21n14, 3' ... 1136 0.0 4 (BJ375924) Dictyostelium discoideum cDNA clone:ddc20e17, 3' ... 1136 0.0 4 (BJ375604) Dictyostelium discoideum cDNA clone:ddc19e12, 3' ... 1136 0.0 5 (BJ375309) Dictyostelium discoideum cDNA clone:ddc18b07, 3' ... 1136 0.0 4 (BJ372113) Dictyostelium discoideum cDNA clone:ddc11f11, 3' ... 1136 0.0 2 (BJ372110) Dictyostelium discoideum cDNA clone:ddc11e12, 3' ... 1136 0.0 2 (BJ354962) Dictyostelium discoideum cDNA clone:dda55e11, 3' ... 1136 0.0 4 (BJ351083) Dictyostelium discoideum cDNA clone:dda42b02, 3' ... 1136 0.0 4 (BJ348694) Dictyostelium discoideum cDNA clone:dda34e01, 3' ... 1136 0.0 4 (BJ348532) Dictyostelium discoideum cDNA clone:dda33d17, 3' ... 1136 0.0 4 (BJ346380) Dictyostelium discoideum cDNA clone:dda30a24, 3' ... 1136 0.0 2 (BJ345557) Dictyostelium discoideum cDNA clone:dda28f06, 3' ... 1136 0.0 2 (BJ344081) Dictyostelium discoideum cDNA clone:dda18j07, 3' ... 1136 0.0 3 (BJ342119) Dictyostelium discoideum cDNA clone:dda9h18, 3' e... 1136 0.0 2 (BJ340075) Dictyostelium discoideum cDNA clone:dda11d18, 3' ... 1136 0.0 2 (BJ339925) Dictyostelium discoideum cDNA clone:dda11b02, 3' ... 1136 0.0 2 (BJ342249) Dictyostelium discoideum cDNA clone:dda13h06, 3' ... 1130 0.0 3 (BJ402105) Dictyostelium discoideum cDNA clone:dds20c14, 3' ... 1128 0.0 4 (BJ383901) Dictyostelium discoideum cDNA clone:ddc47i17, 3' ... 1128 0.0 3 (BJ380418) Dictyostelium discoideum cDNA clone:ddc38h03, 3' ... 1128 0.0 4 (BJ349258) Dictyostelium discoideum cDNA clone:dda35m19, 3' ... 1128 0.0 3 (BJ342864) Dictyostelium discoideum cDNA clone:dda15n06, 3' ... 1128 0.0 2 (BJ399088) Dictyostelium discoideum cDNA clone:dds4f05, 3' e... 1124 0.0 2 (BJ340403) Dictyostelium discoideum cDNA clone:dda12n23, 3' ... 1118 0.0 1 (BJ385285) Dictyostelium discoideum cDNA clone:ddc54n10, 3' ... 1116 0.0 2 (BJ376685) Dictyostelium discoideum cDNA clone:ddc29b16, 3' ... 1116 0.0 2 (BJ374296) Dictyostelium discoideum cDNA clone:ddc7i01, 3' e... 1102 0.0 2 (BJ341309) Dictyostelium discoideum cDNA clone:dda6i02, 3' e... 1090 0.0 3 (BJ385411) Dictyostelium discoideum cDNA clone:ddc54i22, 3' ... 1084 0.0 4 (BJ343595) Dictyostelium discoideum cDNA clone:dda16g14, 3' ... 1082 0.0 3 (BJ341711) Dictyostelium discoideum cDNA clone:dda7h24, 3' e... 1074 0.0 3 (BJ401597) Dictyostelium discoideum cDNA clone:dds23e20, 3' ... 1049 0.0 4 (BJ399467) Dictyostelium discoideum cDNA clone:dds6j06, 3' e... 1049 0.0 4 (BJ399319) Dictyostelium discoideum cDNA clone:dds5n08, 3' e... 1049 0.0 4 (BJ377437) Dictyostelium discoideum cDNA clone:ddc24f17, 3' ... 1049 0.0 4 (BJ375193) Dictyostelium discoideum cDNA clone:ddc17d21, 3' ... 1049 0.0 4 (BJ374916) Dictyostelium discoideum cDNA clone:ddc16d22, 3' ... 1049 0.0 5 (BJ374867) Dictyostelium discoideum cDNA clone:ddc16h13, 3' ... 1049 0.0 4 (BJ373899) Dictyostelium discoideum cDNA clone:ddc5d11, 3' e... 1049 0.0 4 (BJ371971) Dictyostelium discoideum cDNA clone:ddc10j18, 3' ... 1049 0.0 5 (BJ346633) Dictyostelium discoideum cDNA clone:dda24d18, 3' ... 1049 0.0 4 (BJ342547) Dictyostelium discoideum cDNA clone:dda14e16, 3' ... 1049 0.0 4 (BJ342329) Dictyostelium discoideum cDNA clone:dda13c15, 3' ... 1049 0.0 3 (BJ341871) Dictyostelium discoideum cDNA clone:dda8d17, 3' e... 1049 0.0 4 (BJ340878) Dictyostelium discoideum cDNA clone:dda4b10, 3' e... 1049 0.0 4 (BJ373463) Dictyostelium discoideum cDNA clone:ddc3n01, 3' e... 1045 0.0 4 (BJ398235) Dictyostelium discoideum cDNA clone:dds11h14, 3' ... 1043 0.0 4 (BJ377607) Dictyostelium discoideum cDNA clone:ddc25b05, 3' ... 1043 0.0 3 (BJ344356) Dictyostelium discoideum cDNA clone:dda19a06, 3' ... 1043 0.0 4 (BJ400811) Dictyostelium discoideum cDNA clone:dds14n21, 3' ... 1041 0.0 3 (BJ399589) Dictyostelium discoideum cDNA clone:dds6j17, 3' e... 1041 0.0 4 (BJ347225) Dictyostelium discoideum cDNA clone:dda26p10, 3' ... 1041 0.0 4 (BJ340965) Dictyostelium discoideum cDNA clone:dda4g17, 3' e... 1041 0.0 4 (BJ400441) Dictyostelium discoideum cDNA clone:dds13e12, 3' ... 1037 0.0 2 (BJ325175) Dictyostelium discoideum cDNA clone:dda13h06, 5' ... 1031 0.0 3 (BJ373512) Dictyostelium discoideum cDNA clone:ddc3l10, 3' e... 1023 0.0 3 (BJ386420) Dictyostelium discoideum cDNA clone:ddc58m05, 3' ... 1019 0.0 2 (BJ382229) Dictyostelium discoideum cDNA clone:ddc44e04, 3' ... 1019 0.0 2 (BJ386188) Dictyostelium discoideum cDNA clone:ddc57m09, 3' ... 1013 0.0 2 (BJ373887) Dictyostelium discoideum cDNA clone:ddc5a10, 3' e... 1013 0.0 3 (BJ381988) Dictyostelium discoideum cDNA clone:ddc43e14, 3' ... 1009 0.0 4 (BJ402755) Dictyostelium discoideum cDNA clone:dds17m21, 3' ... 1005 0.0 2 (BJ378306) Dictyostelium discoideum cDNA clone:ddc31b18, 3' ... 983 0.0 2 (BJ385694) Dictyostelium discoideum cDNA clone:ddc55h19, 3' ... 971 0.0 2 (BJ379446) Dictyostelium discoideum cDNA clone:ddc34k22, 3' ... 971 0.0 2 (BJ399312) Dictyostelium discoideum cDNA clone:dds5k10, 3' e... 965 0.0 5 (BJ384353) Dictyostelium discoideum cDNA clone:ddc49l03, 3' ... 965 0.0 2 (BJ384303) Dictyostelium discoideum cDNA clone:ddc49a01, 3' ... 959 0.0 2 (BJ349492) Dictyostelium discoideum cDNA clone:dda36l16, 3' ... 955 0.0 2 (BJ383957) Dictyostelium discoideum cDNA clone:ddc47d22, 3' ... 948 0.0 2 (BJ373824) Dictyostelium discoideum cDNA clone:ddc4m04, 3' e... 783 0.0 5 (BJ374760) Dictyostelium discoideum cDNA clone:ddc16m02, 3' ... 1043 0.0 3 (BJ377168) Dictyostelium discoideum cDNA clone:ddc22g23, 3' ... 890 0.0 2 (BJ381891) Dictyostelium discoideum cDNA clone:ddc43c07, 3' ... 1057 0.0 3 (BJ373613) Dictyostelium discoideum cDNA clone:ddc3l20, 3' e... 993 0.0 2 (BJ381956) Dictyostelium discoideum cDNA clone:ddc43o10, 3' ... 936 0.0 4 (BJ372889) Dictyostelium discoideum cDNA clone:ddc14e20, 3' ... 954 0.0 3 (BJ341198) Dictyostelium discoideum cDNA clone:dda5j15, 3' e... 1035 0.0 2 (BJ400260) Dictyostelium discoideum cDNA clone:dds9a16, 3' e... 1037 0.0 1 (BJ345578) Dictyostelium discoideum cDNA clone:dda28j05, 3' ... 1029 0.0 2 (BJ356398) Dictyostelium discoideum cDNA clone:dda60n03, 3' ... 989 0.0 2 (BJ374432) Dictyostelium discoideum cDNA clone:ddc7d21, 3' e... 505 0.0 4 (BJ381618) Dictyostelium discoideum cDNA clone:ddc42i01, 3' ... 916 0.0 4 (BJ323516) Dictyostelium discoideum cDNA clone:dda11b02, 5' ... 846 0.0 3 (BJ359942) Dictyostelium discoideum cDNA clone:ddc3l10, 5' e... 896 0.0 3 (BJ388653) Dictyostelium discoideum cDNA clone:dds6j17, 5' e... 936 0.0 2 (BJ325572) Dictyostelium discoideum cDNA clone:dda1o07, 5' e... 815 0.0 3 (BJ384759) Dictyostelium discoideum cDNA clone:ddc50j13, 3' ... 890 0.0 4 (BJ328675) Dictyostelium discoideum cDNA clone:dda29e04, 5' ... 791 0.0 3 (BJ387844) Dictyostelium discoideum cDNA clone:dds5k10, 5' e... 791 0.0 3 (BJ390808) Dictyostelium discoideum cDNA clone:dds23e20, 5' ... 785 0.0 2 (BJ323639) Dictyostelium discoideum cDNA clone:dda11d18, 5' ... 803 0.0 3 (BJ328409) Dictyostelium discoideum cDNA clone:dda28f06, 5' ... 789 0.0 3 (BJ358645) Dictyostelium discoideum cDNA clone:ddc10j18, 5' ... 787 0.0 3 (BJ386681) Dictyostelium discoideum cDNA clone:dds10g03, 5' ... 787 0.0 3 (BJ389903) Dictyostelium discoideum cDNA clone:dds20c14, 5' ... 785 0.0 3 (BJ360279) Dictyostelium discoideum cDNA clone:ddc5d11, 5' e... 785 0.0 3 (BJ360876) Dictyostelium discoideum cDNA clone:ddc8i12, 5' e... 779 0.0 3 (BJ360770) Dictyostelium discoideum cDNA clone:ddc7d21, 5' e... 779 0.0 3 (BJ325253) Dictyostelium discoideum cDNA clone:dda13c15, 5' ... 777 0.0 3 (BJ325083) Dictyostelium discoideum cDNA clone:dda9h18, 5' e... 785 0.0 3 (BJ341752) Dictyostelium discoideum cDNA clone:dda8e01, 3' e... 930 0.0 1 (BJ361675) Dictyostelium discoideum cDNA clone:ddc18b08, 5' ... 787 0.0 3 (BJ361203) Dictyostelium discoideum cDNA clone:ddc16m02, 5' ... 777 0.0 3 (BJ323911) Dictyostelium discoideum cDNA clone:dda12j20, 5' ... 789 0.0 3 (BJ360776) Dictyostelium discoideum cDNA clone:ddc7f22, 5' e... 777 0.0 3 (BJ369059) Dictyostelium discoideum cDNA clone:ddc49l03, 5' ... 833 0.0 3 (BJ325445) Dictyostelium discoideum cDNA clone:dda14e16, 5' ... 785 0.0 3 (BJ371477) Dictyostelium discoideum cDNA clone:ddc58m05, 5' ... 813 0.0 3 (BJ361334) Dictyostelium discoideum cDNA clone:ddc16d22, 5' ... 769 0.0 3 (BJ361674) Dictyostelium discoideum cDNA clone:ddc18b07, 5' ... 783 0.0 3 (BJ326464) Dictyostelium discoideum cDNA clone:dda16g14, 5' ... 779 0.0 3 (BJ370889) Dictyostelium discoideum cDNA clone:ddc55h19, 5' ... 753 0.0 3 (BJ336833) Dictyostelium discoideum cDNA clone:dda55e11, 5' ... 751 0.0 3 (BJ324880) Dictyostelium discoideum cDNA clone:dda8d17, 5' e... 787 0.0 3 (BJ388423) Dictyostelium discoideum cDNA clone:dds9a16, 5' e... 902 0.0 1 (BJ336519) Dictyostelium discoideum cDNA clone:dda54o01, 5' ... 789 0.0 3 (AU053330) Dictyostelium discoideum slug cDNA, clone SLI403. 896 0.0 1 (BJ358772) Dictyostelium discoideum cDNA clone:ddc11e12, 5' ... 777 0.0 3 (BJ369390) Dictyostelium discoideum cDNA clone:ddc50k10, 5' ... 789 0.0 3 (BJ323929) Dictyostelium discoideum cDNA clone:dda12n23, 5' ... 785 0.0 3 (BJ362417) Dictyostelium discoideum cDNA clone:ddc21n14, 5' ... 789 0.0 3 (BJ362160) Dictyostelium discoideum cDNA clone:ddc20e17, 5' ... 785 0.0 3 (BJ324394) Dictyostelium discoideum cDNA clone:dda6i02, 5' e... 527 0.0 4 (BJ331564) Dictyostelium discoideum cDNA clone:dda35m19, 5' ... 749 0.0 4 (BJ360641) Dictyostelium discoideum cDNA clone:ddc7i01, 5' e... 779 0.0 3 (BJ324066) Dictyostelium discoideum cDNA clone:dda4g17, 5' e... 775 0.0 3 (BJ363492) Dictyostelium discoideum cDNA clone:ddc26p24, 5' ... 789 0.0 2 (BJ364007) Dictyostelium discoideum cDNA clone:ddc29b16, 5' ... 698 0.0 3 (BJ331139) Dictyostelium discoideum cDNA clone:dda34e01, 5' ... 757 0.0 2 (BJ387850) Dictyostelium discoideum cDNA clone:dds5n08, 5' e... 809 0.0 1 (BJ361571) Dictyostelium discoideum cDNA clone:ddc17d21, 5' ... 658 0.0 3 (BJ362863) Dictyostelium discoideum cDNA clone:ddc23g23, 5' ... 702 0.0 3 (BJ386845) Dictyostelium discoideum cDNA clone:dds10o19, 5' ... 632 0.0 3 (BJ363082) Dictyostelium discoideum cDNA clone:ddc25b05, 5' ... 668 0.0 3 (BJ367639) Dictyostelium discoideum cDNA clone:ddc43o10, 5' ... 618 0.0 3 (BJ360085) Dictyostelium discoideum cDNA clone:ddc4m04, 5' e... 626 0.0 3 (BJ369450) Dictyostelium discoideum cDNA clone:ddc50j13, 5' ... 658 0.0 3 (BJ331003) Dictyostelium discoideum cDNA clone:dda33d17, 5' ... 615 0.0 3 (BJ388552) Dictyostelium discoideum cDNA clone:dds6j06, 5' e... 613 0.0 3 (BJ364912) Dictyostelium discoideum cDNA clone:ddc33o09, 5' ... 617 0.0 3 (BJ371298) Dictyostelium discoideum cDNA clone:ddc57m09, 5' ... 609 0.0 3 (BJ366188) Dictyostelium discoideum cDNA clone:ddc38h03, 5' ... 609 0.0 3 (BJ333248) Dictyostelium discoideum cDNA clone:dda42b02, 5' ... 613 0.0 3 (BJ328424) Dictyostelium discoideum cDNA clone:dda28j05, 5' ... 605 0.0 3 (BJ331687) Dictyostelium discoideum cDNA clone:dda36l16, 5' ... 611 0.0 3 (BJ367584) Dictyostelium discoideum cDNA clone:ddc43c07, 5' ... 599 0.0 3 (BJ389667) Dictyostelium discoideum cDNA clone:dds19j17, 5' ... 599 0.0 3 (BJ367285) Dictyostelium discoideum cDNA clone:ddc42i01, 5' ... 599 0.0 3 (BJ327061) Dictyostelium discoideum cDNA clone:dda19a06, 5' ... 599 0.0 3 (BJ374440) Dictyostelium discoideum cDNA clone:ddc7f22, 3' e... 751 0.0 1 (BJ371839) Dictyostelium discoideum cDNA clone:ddc1o14, 3' e... 624 0.0 3 (BJ368707) Dictyostelium discoideum cDNA clone:ddc47d22, 5' ... 609 0.0 3 (BJ329840) Dictyostelium discoideum cDNA clone:dda26p10, 5' ... 618 0.0 3 (BJ340728) Dictyostelium discoideum cDNA clone:dda3f17, 3' e... 718 0.0 1 (BJ390378) Dictyostelium discoideum cDNA clone:dds22o02, 5' ... 611 0.0 3 (BJ389207) Dictyostelium discoideum cDNA clone:dds17m21, 5' ... 609 0.0 3 (BJ326287) Dictyostelium discoideum cDNA clone:dda15n06, 5' ... 555 0.0 3 (BJ381642) Dictyostelium discoideum cDNA clone:ddc42o01, 3' ... 710 0.0 1 (BJ369016) Dictyostelium discoideum cDNA clone:ddc49a01, 5' ... 555 0.0 3 (BJ391068) Dictyostelium discoideum cDNA clone:dds14n21, 5' ... 597 0.0 3 (BJ338079) Dictyostelium discoideum cDNA clone:dda60c03, 5' ... 615 0.0 3 (BJ363012) Dictyostelium discoideum cDNA clone:ddc24f17, 5' ... 539 0.0 3 (BJ329316) Dictyostelium discoideum cDNA clone:dda24d18, 5' ... 597 0.0 3 (BJ360036) Dictyostelium discoideum cDNA clone:ddc3l20, 5' e... 535 0.0 3 (BJ361289) Dictyostelium discoideum cDNA clone:ddc16h13, 5' ... 541 0.0 3 (BJ360269) Dictyostelium discoideum cDNA clone:ddc5a10, 5' e... 686 0.0 1 (BJ368326) Dictyostelium discoideum cDNA clone:ddc46a09, 5' ... 527 0.0 4 (BJ358473) Dictyostelium discoideum cDNA clone:ddc1o14, 5' e... 609 0.0 2 (BJ370645) Dictyostelium discoideum cDNA clone:ddc54i22, 5' ... 529 0.0 3 (AU062216) Dictyostelium discoideum slug cDNA, clone SLI403. 656 0.0 1 (BJ358638) Dictyostelium discoideum cDNA clone:ddc10h17, 5' ... 500 0.0 3 (BJ324287) Dictyostelium discoideum cDNA clone:dda5j15, 5' e... 537 e-179 3 (BJ365307) Dictyostelium discoideum cDNA clone:ddc34k22, 5' ... 442 e-166 3 (BJ367304) Dictyostelium discoideum cDNA clone:ddc42o01, 5' ... 452 e-166 3 (BJ359452) Dictyostelium discoideum cDNA clone:ddc14e20, 5' ... 458 e-166 3 (BJ332764) Dictyostelium discoideum cDNA clone:dda40b22, 5' ... 438 e-165 3 (BJ370527) Dictyostelium discoideum cDNA clone:ddc54n10, 5' ... 436 e-165 3 (BJ368661) Dictyostelium discoideum cDNA clone:ddc47i17, 5' ... 436 e-165 3 (BJ387658) Dictyostelium discoideum cDNA clone:dds4f05, 5' e... 464 e-163 3 (BJ390508) Dictyostelium discoideum cDNA clone:dds22o13, 5' ... 531 e-162 2 (AU038809) Dictyostelium discoideum slug cDNA, clone SSL509. 561 e-155 1 (BJ359902) Dictyostelium discoideum cDNA clone:ddc3n01, 5' e... 545 e-150 1 (BJ399046) Dictyostelium discoideum cDNA clone:dds3g21, 3' e... 511 e-140 1 (AU040091) Dictyostelium discoideum slug cDNA, clone SLA393. 488 e-133 1 (AU071760) Dictyostelium discoideum slug cDNA, clone SSC471. 468 e-127 1 (C94414) Dictyostelium discoideum slug cDNA, clone SSK672. 452 e-122 1 (BJ383548) Dictyostelium discoideum cDNA clone:ddc53l12, 3' ... 264 e-122 2 (BJ378518) Dictyostelium discoideum cDNA clone:ddc32b01, 3' ... 359 e-108 2 (BJ386958) Dictyostelium discoideum cDNA clone:dds11h14, 5' ... 309 e-106 3 (BJ367661) Dictyostelium discoideum cDNA clone:ddc43e14, 5' ... 147 2e-78 3 (AU073452) Dictyostelium discoideum slug cDNA, clone SSH243. 186 2e-62 2 (BJ385196) Dictyostelium discoideum cDNA clone:ddc54l03, 3' ... 113 7e-59 4 (BJ324757) Dictyostelium discoideum cDNA clone:dda7h24, 5' e... 105 1e-58 3 (AU073624) Dictyostelium discoideum slug cDNA, clone SSH694. 174 3e-57 2 (AU074677) Dictyostelium discoideum slug cDNA, clone SSL509. 88 7e-43 3 (BJ329088) Dictyostelium discoideum cDNA clone:dda30a24, 5' ... 117 4e-40 2 (BJ374522) Dictyostelium discoideum cDNA clone:ddc8i12, 3' e... 121 4e-34 3 (BJ329578) Dictyostelium discoideum cDNA clone:dda25e13, 5' ... 123 2e-27 2 (C84195) Dictyostelium discoideum slug cDNA, clone SSC471. 127 2e-24 1 (BJ367980) Dictyostelium discoideum cDNA clone:ddc44e04, 5' ... 123 3e-23 1 (AU038424) Dictyostelium discoideum slug cDNA, clone SSH694. 105 8e-18 1 (BJ363083) Dictyostelium discoideum cDNA clone:ddc25b06, 5' ... 70 4e-07 1 (BJ368120) Dictyostelium discoideum cDNA clone:ddc45i12, 5' ... 54 0.025 1 (AC133060) Rattus norvegicus clone CH230-11A15, *** SEQUENCI... 50 0.39 1 (CU633280) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.39 1 (CT826397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.39 1 (FH682261) CHO_OF5024xg21f1.ab1 CHO_OF5 Nicotiana tabacum ge... 50 0.39 1 (FH061850) CHO_OF3601xa11r1.ab1 CHO_OF3 Nicotiana tabacum ge... 50 0.39 1 (FH305160) CHO_OF4317xi14f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.81 2 (AC095614) Rattus norvegicus clone CH230-8C15, *** SEQUENCIN... 48 1.5 1 (AC095142) Rattus norvegicus clone CH230-8A7, *** SEQUENCING... 48 1.5 1 (CU463047) Medicago truncatula chromosome 5 clone mth2-71h21... 48 1.5 1 (AC180359) Strongylocentrotus purpuratus clone R3-3114F22, W... 48 1.5 1 (AC178403) Strongylocentrotus purpuratus clone R3-3110P2, WO... 48 1.5 1 (AC174940) Bos taurus clone CH240-278P16, WORKING DRAFT SEQU... 48 1.5 1 (AC164050) Bos taurus clone CH240-149K7, *** SEQUENCING IN P... 48 1.5 1 (CX542488) s13dNF94H10GS090_468292 Germinating Seed Medicago... 48 1.5 1 (AJ499564) Medicago truncatula EST, clone mtgmacc120005g02. 48 1.5 1 (BI263929) NF093A08PL1F1065 Phosphate starved leaf Medicago ... 48 1.5 1 (BG646995) EST508614 HOGA Medicago truncatula cDNA clone pHO... 48 1.5 1 (BG582410) EST484154 GVN Medicago truncatula cDNA clone pGVN... 48 1.5 1 (AA661000) 00897 MtRHE Medicago truncatula cDNA 5' similar t... 48 1.5 1 (BF520040) EST457508 DSIL Medicago truncatula cDNA clone pDS... 48 1.5 1 (BE205093) EST397769 KV0 Medicago truncatula cDNA clone pKV0... 48 1.5 1 (AW776481) EST335546 DSIL Medicago truncatula cDNA clone pDS... 48 1.5 1 (AW775043) EST334194 KV3 Medicago truncatula cDNA clone pKV3... 48 1.5 1 (AW560175) EST315223 DSIR Medicago truncatula cDNA clone pDS... 48 1.5 1 (EV258473) MTYDK76TF JCVI-MT1 Medicago truncatula cDNA 5', m... 48 1.5 1 (AW256864) EST305001 KV2 Medicago truncatula cDNA clone KV2-... 48 1.5 1 (AP008934) Staphylococcus saprophyticus subsp. saprophyticus... 48 1.5 1 (CU074323) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.7 9 (DU409590) 1098486033277 CHORI-243 Ovis aries genomic clone ... 34 4.2 3 (AX661200) Sequence 3 from Patent WO0246217. 36 4.3 5 (U41012) Caenorhabditis elegans cosmid C06A6, complete seque... 36 4.4 5 (AC177729) Strongylocentrotus purpuratus clone R3-1008L6, WO... 38 4.6 7 (AC134909) Mus musculus chromosome 3 clone RP23-402O2, compl... 46 6.1 1 (AC124493) Mus musculus BAC clone RP23-462P13 from chromosom... 46 6.1 1 (AP004517) Lotus japonicus genomic DNA, chromosome 6, clone:... 46 6.1 1 (AC128192) Rattus norvegicus clone CH230-32F18, *** SEQUENCI... 46 6.1 1 (AC127871) Rattus norvegicus clone CH230-237O7, WORKING DRAF... 46 6.1 1 (AC112404) Rattus norvegicus clone CH230-107P3, *** SEQUENCI... 46 6.1 1 (AC111994) Rattus norvegicus clone CH230-148A18, *** SEQUENC... 46 6.1 1 (AC104175) Rattus norvegicus clone CH230-132O5, WORKING DRAF... 46 6.1 1 (AC097995) Rattus norvegicus clone CH230-56E12, *** SEQUENCI... 46 6.1 1 (CU914392) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.1 1 (CU606904) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.1 1 (AC094114) Rattus norvegicus clone CH230-2N4, *** SEQUENCING... 46 6.1 1 (DH548740) Rattus norvegicus DNA, BAC clone: RNB1-056E09, 3'... 46 6.1 1 (DE075889) Oryzias latipes DNA, clone: ola1-179G04.F, genomi... 46 6.1 1 (BZ186125) CH230-278M3.TJ CHORI-230 Segment 2 Rattus norvegi... 46 6.1 1 (BG936543) SS1-0922 Atlantic Salmon spleen Salmo salar cDNA ... 46 6.1 1 (FM131678) Rattus norvegicus EST, 5'-end sequence, clone etn... 46 6.1 1 (EJ869658) 1093018340314 Global-Ocean-Sampling_GS-30-02-01-1... 32 6.1 4 (DQ870777) Mus musculus strain NMRI chromosome 1 fusion brea... 38 7.7 3 (CE167008) tigr-gss-dog-17000326572997 Dog Library Canis lup... 42 8.6 2 (AG697693) Macaca fuscata fuscata DNA, clone: MSB2-135A12_F,... 38 9.7 3
>(BJ340385) Dictyostelium discoideum cDNA clone:dda12j20, 3' end, single read. Length = 644
Score = 1263 bits (637), Expect = 0.0 Identities = 642/644 (99%) Strand = Plus / Minus
Query: 1530 aaccaggtgatattcatttattccataaattagaaggtttaggtatgcaaagcatataca 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 644 aaccaggtgatattcatttattccataaattagaaggtttaggtatgcaaagcatataca 585
Query: 1590 aattataataaaccagattgtggtccattaggtaaaggttcaattgaagatggtaaaatt 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 584 aattataataaaccagattgtggtccattaggtaaaggttcaattgaagatggtaaaatt 525
Query: 1650 tatacattttcatcatttatgtgttggacaggttgtgatagattagcaaagattgcaaag 1709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 524 tatacattttcatcatttatgtgttggacaggttgtgatagattagcaaagattgcaaag 465
Query: 1710 agtttaaagattccattacgtgcacatttctggcaagaatctgcaaataaaatcaaggaa 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 464 agtttaaagattccattacgtgcacatttctggcaagaatctgcaaataaaatcaaggaa 405
Query: 1770 gaaatgatggaacgttgcttcaacaaggaaaagaattcatttgtatcaacttgggatgga 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 404 gaaatgatggaacgttgcttcaacaaggaaaagaattcatttgtatcaacttgggatgga 345
Query: 1830 gatgatgttgatccttaccttttattgattgcagaatctggattcactaaaattgatgat 1889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 gatgatgttgatccttaccttttattgattgcagaatctggattcactaaaattgatgat 285
Query: 1890 ccaaaattcattggaaccgttgaatatttagagaaaaaacttagaagaggcaaatacatt 1949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 284 ccaaaattcattggaaccgttgaatatttagagaaaaaacttagaagaggcaaatacatt 225
Query: 1950 attcaatcaccagacagtgttagtgcatcaactacattcactctctactatatttcttgt 2009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 224 attcaatcaccagacagtgttagtgcatcaactacattcactctctactatatttcttgt 165
Query: 2010 attgctaaaatgggtagaaaagaagaagcaagagaactttttgaaaatatccttaatgat 2069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164 attgctaaaatgggtagaaaagaagaagcaagagaactttttgaaaatatccttaatgat 105
Query: 2070 tgcactccattgggtttaattagtcaagatgttaaccttgaaaccaaagaaatttggggt 2129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104 tgcactccattgggtttaattagtcaagatgttaaccttgaaaccaaagaaatttggggt 45
Query: 2130 aactttccaaaaacaacttcaatggttggtataattaatgctgc 2173 ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 44 aactttccaaaaacaacgncaatggttggtataattaatgctgc 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 2,552,910,602 Number of extensions: 149660427 Number of successful extensions: 12184494 Number of sequences better than 10.0: 277 Length of query: 2379 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2354 Effective length of database: 96,311,147,814 Effective search space: 226716441954156 Effective search space used: 226716441954156 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.27 |
Homology vs Protein |
Query= Contig-U16339-1 (Contig-U16339-1Q) /CSM_Contig/Contig-U16339-1Q.Seq.d (2379 letters)
Database: nrp_A 3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AC116979_62(AC116979|pid:none) Dictyostelium discoideum chromoso... 786 0.0 AY923753_1(AY923753|pid:none) Physarum polycephalum glycosyl hyd... 520 e-145 DQ384332_1(DQ384332|pid:none) Physarum polycephalum glycosyl hyd... 518 e-145 CP000774_307(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 349 e-137 CP000544_1102(CP000544|pid:none) Halorhodospira halophila SL1, c... 348 e-135 CP000453_6(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1, ... 346 e-134 CP000285_234(CP000285|pid:none) Chromohalobacter salexigens DSM ... 350 e-134 CP000390_1519(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 334 e-133 CP000555_3782(CP000555|pid:none) Methylibium petroleiphilum PM1,... 341 e-131 CP000352_356(CP000352|pid:none) Ralstonia metallidurans CH34, co... 326 e-128 CP000090_415(CP000090|pid:none) Ralstonia eutropha JMP134 chromo... 321 e-128 CU633749_367(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 321 e-126 CP000157_937(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 326 e-120 CP000115_3007(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 308 e-115 DQ390347_1(DQ390347|pid:none) Hartmannella vermiformis glycosyl ... 407 e-111 DQ384328_1(DQ384328|pid:none) Hartmannella vermiformis glycosyl ... 405 e-111 DQ384329_1(DQ384329|pid:none) Hartmannella vermiformis glycosyl ... 405 e-111 AM039952_3335(AM039952|pid:none) Xanthomonas campestris pv. vesi... 363 2e-98 AE008923_3162(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 362 3e-98 AE013598_1578(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 361 6e-98 AM920689_1132(AM920689|pid:none) Xanthomonas campestris pv. camp... 360 1e-97 CP000699_3582(CP000699|pid:none) Sphingomonas wittichii RW1, com... 337 2e-90 CP001635_974(CP001635|pid:none) Variovorax paradoxus S110 chromo... 335 3e-90 CP000316_3844(CP000316|pid:none) Polaromonas sp. JS666, complete... 324 8e-87 CP000529_519(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 323 2e-86 CP000512_4133(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 321 9e-86 CP000158_1553(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 289 4e-76 CP000449_1015(CP000449|pid:none) Maricaulis maris MCS10, complet... 286 2e-75 CP000777_2477(CP000777|pid:none) Leptospira biflexa serovar Pato... 203 3e-66 CP000139_3157(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 146 9e-59 CP000140_3811(CP000140|pid:none) Parabacteroides distasonis ATCC... 139 3e-58 CP001472_2872(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 123 7e-52 CP000075_2985(CP000075|pid:none) Pseudomonas syringae pv. syring... 134 2e-49 CP000463_3682(CP000463|pid:none) Rhodopseudomonas palustris BisA... 131 8e-48 BX572604_242(BX572604|pid:none) Rhodopseudomonas palustris CGA00... 129 1e-47 AM902716_390(AM902716|pid:none) Bordetella petrii strain DSM 128... 128 3e-47 CP001131_2402(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 124 4e-47 CP001101_941(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 114 1e-46 AY926577_1(AY926577|pid:none) Jakoba libera glycosyl hydrolase m... 190 2e-46 CP000850_2540(CP000850|pid:none) Salinispora arenicola CNS-205, ... 134 2e-46 DQ384296_1(DQ384296|pid:none) Jakoba libera glycosyl hydrolase m... 189 4e-46 CP000127_1538(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 139 4e-46 CP001099_785(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 117 9e-46 CP001196_1047(CP001196|pid:none) Oligotropha carboxidovorans OM5... 109 3e-45 CP000386_2688(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 117 4e-45 CP000250_1882(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 127 8e-45 CP001644_1380(CP001644|pid:none) Ralstonia pickettii 12D chromos... 116 2e-44 BA000035_2165(BA000035|pid:none) Corynebacterium efficiens YS-31... 109 5e-44 CP000394_1316(CP000394|pid:none) Granulibacter bethesdensis CGDN... 114 8e-44 CP000473_2097(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 110 7e-42 BA000030_1938(BA000030|pid:none) Streptomyces avermitilis MA-468... 108 1e-41 AY924416_1(AY924416|pid:none) Acanthamoeba castellanii glycosyl ... 174 1e-41 AP009044_2179(AP009044|pid:none) Corynebacterium glutamicum R DN... 102 1e-41 AX065255_1(AX065255|pid:none) Sequence 381 from Patent WO0100844... 102 4e-41 DQ384325_1(DQ384325|pid:none) Acanthamoeba castellanii NADPH:qui... 169 4e-40 CP000319_3107(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 106 9e-40 CP000431_1264(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 108 1e-39 CP000251_3183(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 111 2e-39 CP000850_623(CP000850|pid:none) Salinispora arenicola CNS-205, c... 97 6e-39 CP000512_3861(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 109 9e-39 CP001131_3288(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 111 6e-38 CP000854_3666(CP000854|pid:none) Mycobacterium marinum M, comple... 102 8e-38 CP000325_3013(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 102 1e-37 CP001359_3362(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 110 2e-37 AL939116_163(AL939116|pid:none) Streptomyces coelicolor A3(2) co... 92 8e-37 CP000975_1297(CP000975|pid:none) Methylacidiphilum infernorum V4... 158 1e-36 T36210(T36210)conserved hypothetical protein SCE36.11c - Strepto... 92 1e-36 CP001029_1249(CP001029|pid:none) Methylobacterium populi BJ001, ... 122 4e-35 CP001510_978(CP001510|pid:none) Methylobacterium extorquens AM1,... 121 8e-35 CT573213_6601(CT573213|pid:none) Frankia alni str. ACN14A chromo... 100 4e-34 BA000030_98(BA000030|pid:none) Streptomyces avermitilis MA-4680 ... 147 2e-33 CP000077_1166(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 91 3e-32 CP000103_2291(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 138 1e-30 AM039952_4169(AM039952|pid:none) Xanthomonas campestris pv. vesi... 136 3e-30 AM746676_8064(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 136 4e-30 BA000023_1217(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 80 6e-30 AE008923_4025(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 134 2e-29 AE013598_456(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA... 134 2e-29 AP008229_430(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA... 134 2e-29 CP000967_4661(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 134 2e-29 CP000908_4439(CP000908|pid:none) Methylobacterium extorquens PA1... 133 3e-29 CP001298_4758(CP001298|pid:none) Methylobacterium chloromethanic... 133 3e-29 CP001510_4582(CP001510|pid:none) Methylobacterium extorquens AM1... 133 3e-29 AE008922_3938(AE008922|pid:none) Xanthomonas campestris pv. camp... 132 6e-29 CP000076_4047(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 132 8e-29 CP000386_1245(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 132 8e-29 BX571965_1117(BX571965|pid:none) Burkholderia pseudomallei strai... 131 1e-28 AM236080_2959(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 130 2e-28 AM711867_1090(AM711867|pid:none) Clavibacter michiganensis subsp... 130 2e-28 AE016853_3052(AE016853|pid:none) Pseudomonas syringae pv. tomato... 129 4e-28 CP001622_2456(CP001622|pid:none) Rhizobium leguminosarum bv. tri... 129 4e-28 BA000040_6764(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 129 5e-28 CP000115_2295(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 127 2e-27 CP000058_2749(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 127 2e-27 CP000440_2353(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 126 3e-27 CT573213_6144(CT573213|pid:none) Frankia alni str. ACN14A chromo... 126 4e-27 CP000320_92(CP000320|pid:none) Nitrobacter hamburgensis X14 plas... 125 5e-27 CP000151_2476(CP000151|pid:none) Burkholderia sp. 383 chromosome... 125 5e-27 CP000159_374(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 125 7e-27 CP000249_3927(CP000249|pid:none) Frankia sp. CcI3, complete geno... 125 9e-27 AE016853_2446(AE016853|pid:none) Pseudomonas syringae pv. tomato... 125 9e-27 CP000086_968(CP000086|pid:none) Burkholderia thailandensis E264 ... 125 9e-27 CP001025_2218(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 125 9e-27 CP000113_6013(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 124 2e-26 CP000474_3808(CP000474|pid:none) Arthrobacter aurescens TC1, com... 123 3e-26 CP001503_2528(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 123 3e-26 CP000094_1838(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 122 5e-26 CP000251_1437(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 122 5e-26 AP006618_3429(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 122 6e-26 CP001298_1343(CP001298|pid:none) Methylobacterium chloromethanic... 122 6e-26 CP000820_729(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 122 8e-26 CP001298_4496(CP001298|pid:none) Methylobacterium chloromethanic... 121 1e-25 CU914168_1385(CU914168|pid:none) Ralstonia solanacearum strain I... 120 2e-25 CP001002_122(CP001002|pid:none) Methylobacterium radiotolerans J... 119 4e-25 CP000267_3971(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 119 5e-25 CT573213_4427(CT573213|pid:none) Frankia alni str. ACN14A chromo... 118 9e-25 CP001618_182(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 118 1e-24 CP000127_1959(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 117 1e-24 CP000820_2187(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 117 2e-24 CP001052_1969(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 117 2e-24 CP001001_2443(CP001001|pid:none) Methylobacterium radiotolerans ... 116 3e-24 AE017261_598(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 115 6e-24 CP000249_1870(CP000249|pid:none) Frankia sp. CcI3, complete geno... 115 6e-24 CP000908_4263(CP000908|pid:none) Methylobacterium extorquens PA1... 115 1e-23 CP001053_2324(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 114 1e-23 BA000011_1338(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 114 2e-23 CT573326_1779(CT573326|pid:none) Pseudomonas entomophila str. L4... 113 3e-23 CP001192_370(CP001192|pid:none) Rhizobium leguminosarum bv. trif... 113 3e-23 CP001124_288(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 113 4e-23 AM746676_6746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 113 4e-23 AM747722_482(AM747722|pid:none) Burkholderia cenocepacia J2315 c... 112 5e-23 CU633901_309(CU633901|pid:none) Podospora anserina genomic DNA c... 112 8e-23 CP000509_4125(CP000509|pid:none) Nocardioides sp. JS614, complet... 111 1e-22 AP006618_1409(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 111 1e-22 BA000030_6509(BA000030|pid:none) Streptomyces avermitilis MA-468... 110 2e-22 AL939110_80(AL939110|pid:none) Streptomyces coelicolor A3(2) com... 110 2e-22 AM420293_2425(AM420293|pid:none) Saccharopolyspora erythraea NRR... 110 2e-22 CP001016_3283(CP001016|pid:none) Beijerinckia indica subsp. indi... 110 3e-22 AL939129_232(AL939129|pid:none) Streptomyces coelicolor A3(2) co... 109 4e-22 CP000820_128(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 108 7e-22 AM420293_6939(AM420293|pid:none) Saccharopolyspora erythraea NRR... 108 1e-21 CP000384_3469(CP000384|pid:none) Mycobacterium sp. MCS, complete... 108 1e-21 CP000656_2657(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 107 3e-21 BA000030_6442(BA000030|pid:none) Streptomyces avermitilis MA-468... 106 3e-21 CP001027_758(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 105 6e-21 CP000616_367(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 105 6e-21 AE016958_2215(AE016958|pid:none) Mycobacterium avium subsp. para... 105 8e-21 CP000480_4384(CP000480|pid:none) Mycobacterium smegmatis str. MC... 105 1e-20 CP000511_3807(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 105 1e-20 CP001029_4740(CP001029|pid:none) Methylobacterium populi BJ001, ... 104 2e-20 AM889285_3048(AM889285|pid:none) Gluconacetobacter diazotrophicu... 102 8e-20 AE000516_2549(AE000516|pid:none) Mycobacterium tuberculosis CDC1... 101 1e-19 AM408590_2422(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 101 1e-19 DQ164098_17(DQ164098|pid:none) Streptomyces hygroscopicus subsp.... 100 2e-19 CP000454_1817(CP000454|pid:none) Arthrobacter sp. FB24, complete... 100 2e-19 CP001402_2511(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 99 9e-19 AM114193_1186(AM114193|pid:none) Uncultured methanogenic archaeo... 98 2e-18 A90451(A90451) conserved hypothetical protein [imported] - Sulfo... 97 2e-18 AM920437_977(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 97 4e-18 CU458896_1625(CU458896|pid:none) Mycobacterium abscessus chromos... 96 8e-18 CP001403_2662(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 96 8e-18 CP001401_2432(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 96 8e-18 CP000077_1692(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 95 1e-17 CP000667_3490(CP000667|pid:none) Salinispora tropica CNB-440, co... 95 1e-17 AM420293_3541(AM420293|pid:none) Saccharopolyspora erythraea NRR... 94 2e-17 AP008957_705(AP008957|pid:none) Rhodococcus erythropolis PR4 DNA... 92 9e-17 AC117076_60(AC117076|pid:none) Dictyostelium discoideum chromoso... 89 7e-16 CP000508_170(CP000508|pid:none) Nocardioides sp. JS614, complete... 88 2e-15 AE008922_1058(AE008922|pid:none) Xanthomonas campestris pv. camp... 87 2e-15 CP001628_1694(CP001628|pid:none) Micrococcus luteus NCTC 2665, c... 87 3e-15 AP007170_89(AP007170|pid:none) Aspergillus oryzae RIB40 genomic ... 87 4e-15 CP000050_3121(CP000050|pid:none) Xanthomonas campestris pv. camp... 86 6e-15 CP000116_923(CP000116|pid:none) Thiobacillus denitrificans ATCC ... 85 1e-14 CP000667_1078(CP000667|pid:none) Salinispora tropica CNB-440, co... 83 4e-14 AE008923_1157(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 83 4e-14 CP001343_25(CP001343|pid:none) Arthrobacter chlorophenolicus A6 ... 82 7e-14 CP000454_3863(CP000454|pid:none) Arthrobacter sp. FB24, complete... 81 2e-13 CP001341_3632(CP001341|pid:none) Arthrobacter chlorophenolicus A... 81 2e-13 CP000850_956(CP000850|pid:none) Salinispora arenicola CNS-205, c... 77 3e-12 CP001399_2522(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 77 3e-12 AM711867_853(AM711867|pid:none) Clavibacter michiganensis subsp.... 77 4e-12 AE006641_2503(AE006641|pid:none) Sulfolobus solfataricus P2, com... 76 6e-12 AM849034_90(AM849034|pid:none) Clavibacter michiganensis subsp. ... 76 6e-12 CP000509_2955(CP000509|pid:none) Nocardioides sp. JS614, complet... 76 6e-12 BA000023_1052(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 73 4e-11 CP000232_639(CP000232|pid:none) Moorella thermoacetica ATCC 3907... 73 5e-11 AE016958_1384(AE016958|pid:none) Mycobacterium avium subsp. para... 72 1e-10 CP000479_2975(CP000479|pid:none) Mycobacterium avium 104, comple... 69 8e-10 CP000432_308(CP000432|pid:none) Rhodococcus jostii RHA1 plasmid ... 63 4e-08 AE006470_1339(AE006470|pid:none) Chlorobium tepidum TLS, complet... 62 7e-08 AP008229_431(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA... 62 1e-07 CP001403_2678(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 59 6e-07 CP000249_2466(CP000249|pid:none) Frankia sp. CcI3, complete geno... 58 1e-06 CP000099_1862(CP000099|pid:none) Methanosarcina barkeri str. Fus... 57 2e-06 AE010299_1157(AE010299|pid:none) Methanosarcina acetivorans str.... 55 1e-05 AL939107_274(AL939107|pid:none) Streptomyces coelicolor A3(2) co... 54 3e-05 CP000750_305(CP000750|pid:none) Kineococcus radiotolerans SRS302... 50 3e-04 CP000850_1048(CP000850|pid:none) Salinispora arenicola CNS-205, ... 49 0.001 CP000860_990(CP000860|pid:none) Candidatus Desulforudis audaxvia... 40 0.30 CP000867_1369(CP000867|pid:none) Methanococcus maripaludis C6, c... 40 0.39 CP000745_532(CP000745|pid:none) Methanococcus maripaludis C7, co... 40 0.51 CT573072_907(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 39 1.1 FP236842_2380(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 38 1.5 CP001344_2394(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 38 1.5 CP000852_90(CP000852|pid:none) Caldivirga maquilingensis IC-167,... 37 2.5 (Q3B6D0) RecName: Full=Adenylosuccinate synthetase; EC=... 37 2.5 DQ017387_1(DQ017387|pid:none) Archaeon #33-9 alpha glucosidase g... 37 3.3 BX950229_1292(BX950229|pid:none) Methanococcus maripaludis strai... 37 3.3 CP000312_725(CP000312|pid:none) Clostridium perfringens SM101, c... 36 5.7
>AC116979_62(AC116979|pid:none) Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. Length = 627
Score = 786 bits (2029), Expect(2) = 0.0 Identities = 396/440 (90%), Positives = 397/440 (90%) Frame = +2
Query: 263 MSFNIPTIXXXXXXXXXXXXXXXXXXXXXXPYISINNKITPENSISSNLNQIEKAVKVAN 442 MSFNIPTI PYISINNKITPENSISSNLNQIEKAVKVAN Sbjct: 1 MSFNIPTIHTNNSKNDNNDENNNNNQHTENPYISINNKITPENSISSNLNQIEKAVKVAN 60
Query: 443 SQNLDLALIGNCSFGALIDKKSCIKWCCIPRFDADPIFCSLVRKSNDSGFYDVVVENFAF 622 SQNLDLALIGNCSFGALIDKKSCIKWCCIPRFDADPIFCSLVRKSNDS Sbjct: 61 SQNLDLALIGNCSFGALIDKKSCIKWCCIPRFDADPIFCSLVRKSNDS------------ 108
Query: 623 SEQVYIKNTAVLSTKLYNTNGGGVEVIDFAPRFNMFSRPYRPSMIIRVIKPLGHCRIKIR 802 AVLSTKLYNTNGGGVEVIDFAPRFNMFSRPYRPSMIIRVIKPLGHCRIKIR Sbjct: 109 ---------AVLSTKLYNTNGGGVEVIDFAPRFNMFSRPYRPSMIIRVIKPLGHCRIKIR 159
Query: 803 LRPTFGYGWGAPEKTRGTNHIRYILPSMVMRLTTNAPISYIVDEVLFEADETLYFVFMAD 982 LRPTFGYGWGAPEKTRGTNHIRYILPSMVMRLTTNAPISYIVDEVLFEADETLYFVFMAD Sbjct: 160 LRPTFGYGWGAPEKTRGTNHIRYILPSMVMRLTTNAPISYIVDEVLFEADETLYFVFMAD 219
Query: 983 ESLRESLHDVTNTYLDKTIEYWQEYTKSLAIPLEWQSQVLRACITVKLCQFEESGAIIAS 1162 ESLRESLHDVTNTYLDKTIEYWQEYTKSLAIPLEWQSQVLRACITVKLCQFEESGAIIAS Sbjct: 220 ESLRESLHDVTNTYLDKTIEYWQEYTKSLAIPLEWQSQVLRACITVKLCQFEESGAIIAS 279
Query: 1163 LTTSIPEEPTKEGYDLRFCWIRDTSYIVHTFNKLGNTKMMEDFLTYISNIVSGSLERGGF 1342 LTTSIPEEPTKEGYDLRFCWIRDTSYIVHTFNKLGNTKMMEDFLTYISNIVSGSLERGGF Sbjct: 280 LTTSIPEEPTKEGYDLRFCWIRDTSYIVHTFNKLGNTKMMEDFLTYISNIVSGSLERGGF 339
Query: 1343 LQPVYGISLETKLYEKSMYRLAGYRGLGPVKIGTRDYKTIQNDVYGQLILASIQMFFDQR 1522 LQPVYGISLETKLYEKSMYRLAGYRGLGPVKIGTRDYKTIQNDVYGQLILASIQMFFDQR Sbjct: 340 LQPVYGISLETKLYEKSMYRLAGYRGLGPVKIGTRDYKTIQNDVYGQLILASIQMFFDQR 399
Query: 1523 LNKPGDIHLFHKLEGLGMQS 1582 LNKPGDIHLFHKLEGLGMQ+ Sbjct: 400 LNKPGDIHLFHKLEGLGMQA 419
Score = 434 bits (1117), Expect(2) = 0.0 Identities = 209/210 (99%), Positives = 210/210 (100%) Frame = +3
Query: 1578 KAYTNYNKPDCGPLGKGSIEDGKIYTFSSFMCWTGCDRLAKIAKSLKIPLRAHFWQESAN 1757 +AYTNYNKPDCGPLGKGSIEDGKIYTFSSFMCWTGCDRLAKIAKSLKIPLRAHFWQESAN Sbjct: 418 QAYTNYNKPDCGPLGKGSIEDGKIYTFSSFMCWTGCDRLAKIAKSLKIPLRAHFWQESAN 477
Query: 1758 KIKEEMMERCFNKEKNSFVSTWDGDDVDPYLLLIAESGFTKIDDPKFIGTVEYLEKKLRR 1937 KIKEEMMERCFNKEKNSFVSTWDGDDVDPYLLLIAESGFTKIDDPKFIGTVEYLEKKLRR Sbjct: 478 KIKEEMMERCFNKEKNSFVSTWDGDDVDPYLLLIAESGFTKIDDPKFIGTVEYLEKKLRR 537
Query: 1938 GKYIIQSPDSVSASTTFTLYYISCIAKMGRKEEARELFENILNDCTPLGLISQDVNLETK 2117 GKYIIQSPDSVSASTTFTLYYISCIAKMGRKEEARELFENILNDCTPLGLISQDVNLETK Sbjct: 538 GKYIIQSPDSVSASTTFTLYYISCIAKMGRKEEARELFENILNDCTPLGLISQDVNLETK 597
Query: 2118 EIWGNFPKTTSMVGIINAAICLSKPWESEI 2207 EIWGNFPKTTSMVGIINAAICLSKPWESEI Sbjct: 598 EIWGNFPKTTSMVGIINAAICLSKPWESEI 627
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3268448 Number of Hits to DB: 3,479,962,362 Number of extensions: 70596810 Number of successful extensions: 167236 Number of sequences better than 10.0: 209 Number of HSP's gapped: 166531 Number of HSP's successfully gapped: 419 Length of query: 793 Length of database: 1,061,185,681 Length adjustment: 137 Effective length of query: 656 Effective length of database: 613,408,305 Effective search space: 402395848080 Effective search space used: 402395848080 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
9 |
AF (FL, S) |
25 |
SL (DIR, L) |
2 |
SS (DIR, S) |
6 |
SH (FL, L) |
0 |
SF (FL, S) |
19 |
CH (FL, L) |
34 |
CF (FL, S) |
25 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |