Contig-U16338-1 |
Contig ID |
Contig-U16338-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
185 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
41 |
Number of EST |
41 |
Link to clone list |
U16338 |
List of clone(s) |
est1=SHB762F,-15,185 est2=SHJ534F,-13,185 est3=SHJ567F,-4,185 est4=SHJ896F,-2,185 est5=AHJ318F,0,185 est6=AHG381F,1,185 est7=AHP471F,1,171 est8=CHF728F,1,185 est9=SHC679F,1,185 est10=VHD447F,1,185 est11=VHD751F,1,185 est12=AHA477F,3,185 est13=AHB220F,3,185 est14=AHE269F,3,185 est15=AHG544F,3,185 est16=SHA286F,3,185 est17=SHI134F,3,185 est18=VHH804F,3,185 est19=VHN340F,3,184 est20=VHN852F,3,184 est21=AHH301F,4,185 est22=SHA205F,6,185 est23=VHG673F,6,185 est24=AHI328F,11,185 est25=VHE723F,11,185 est26=VHH301F,11,185 est27=AHL338F,18,185 est28=AHN362F,18,185 est29=SHL360F,18,185 est30=SHL839F,27,185 est31=SHF380F,28,185 est32=AHJ555F,32,185 est33=AHO485F,32,185 est34=SHF212F,32,185 est35=SHF388F,32,185 est36=SHH317F,32,185 est37=AHM851F,34,185 est38=AHI226F,42,185 est39=AHE884F,46,185 est40=SHD188F,46,185 est41=AHC338F,59,185
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 3.28 |
Homology vs DNA |
Query= Contig-U16338-1 (Contig-U16338-1Q) /CSM_Contig/Contig-U16338-1Q.Seq.d (185 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ422140) Dictyostelium discoideum cDNA clone:ddv45b01, 5' ... 149 4e-32 1 (BJ420202) Dictyostelium discoideum cDNA clone:ddv38f13, 5' ... 149 4e-32 1 (BJ364881) Dictyostelium discoideum cDNA clone:ddc33h07, 5' ... 149 4e-32 1 (BJ334658) Dictyostelium discoideum cDNA clone:dda47h07, 5' ... 149 4e-32 1 (BJ333711) Dictyostelium discoideum cDNA clone:dda43b21, 5' ... 149 4e-32 1 (BJ332579) Dictyostelium discoideum cDNA clone:dda39i18, 5' ... 149 4e-32 1 (BJ397513) Dictyostelium discoideum cDNA clone:dds46h15, 5' ... 147 2e-31 1 (BJ337490) Dictyostelium discoideum cDNA clone:dda57l15, 5' ... 147 2e-31 1 (BJ426321) Dictyostelium discoideum cDNA clone:ddv58h14, 5' ... 145 6e-31 1 (BJ425905) Dictyostelium discoideum cDNA clone:ddv57p09, 5' ... 145 6e-31 1 (BJ333871) Dictyostelium discoideum cDNA clone:dda44g11, 5' ... 145 6e-31 1 (BJ338483) Dictyostelium discoideum cDNA clone:dda61n18, 5' ... 129 4e-27 2 (BJ420716) Dictyostelium discoideum cDNA clone:ddv40n05, 5' ... 129 4e-27 2 (BJ422069) Dictyostelium discoideum cDNA clone:ddv44a20, 5' ... 129 4e-27 2 (BJ391489) Dictyostelium discoideum cDNA clone:dds24i02, 5' ... 129 4e-27 2 (BJ334065) Dictyostelium discoideum cDNA clone:dda45b01, 5' ... 129 4e-27 2 (BJ395812) Dictyostelium discoideum cDNA clone:dds40c09, 5' ... 129 4e-27 2 (BJ391709) Dictyostelium discoideum cDNA clone:dds24k22, 5' ... 129 4e-27 2 (BJ330877) Dictyostelium discoideum cDNA clone:dda33g06, 5' ... 129 4e-27 2 (BJ422493) Dictyostelium discoideum cDNA clone:ddv46h02, 5' ... 129 4e-27 2 (BJ330534) Dictyostelium discoideum cDNA clone:dda31j20, 5' ... 129 4e-27 2 (BJ419858) Dictyostelium discoideum cDNA clone:ddv37n12, 5' ... 129 4e-27 2 (BJ335126) Dictyostelium discoideum cDNA clone:dda49d05, 5' ... 129 4e-27 2 (BJ396791) Dictyostelium discoideum cDNA clone:dds43p24, 5' ... 129 4e-27 2 (BJ396679) Dictyostelium discoideum cDNA clone:dds43e17, 5' ... 129 4e-27 2 (BJ396602) Dictyostelium discoideum cDNA clone:dds43c09, 5' ... 129 4e-27 2 (BJ392435) Dictyostelium discoideum cDNA clone:dds27l15, 5' ... 129 5e-27 2 (BJ397748) Dictyostelium discoideum cDNA clone:dds47n10, 5' ... 129 4e-26 1 (BJ394394) Dictyostelium discoideum cDNA clone:dds34p19, 5' ... 129 4e-26 1 (BJ393050) Dictyostelium discoideum cDNA clone:dds29m20, 5' ... 129 4e-26 1 (BJ336294) Dictyostelium discoideum cDNA clone:dda53l09, 5' ... 129 4e-26 1 (BJ394395) Dictyostelium discoideum cDNA clone:dds34p21, 5' ... 121 9e-24 1 (BJ394172) Dictyostelium discoideum cDNA clone:dds34g04, 5' ... 121 9e-24 1 (BJ338040) Dictyostelium discoideum cDNA clone:dda59j22, 5' ... 121 9e-24 1 (BJ337185) Dictyostelium discoideum cDNA clone:dda56f14, 5' ... 117 1e-22 1 (BJ395200) Dictyostelium discoideum cDNA clone:dds38b05, 5' ... 107 1e-19 1 (BJ338128) Dictyostelium discoideum cDNA clone:dda60n03, 5' ... 107 1e-19 1 (BJ335550) Dictyostelium discoideum cDNA clone:dda50m13, 5' ... 107 1e-19 1 (BJ334639) Dictyostelium discoideum cDNA clone:dda47c08, 5' ... 101 8e-18 1 (BJ393334) Dictyostelium discoideum cDNA clone:dds30o21, 5' ... 94 2e-15 1 (BJ332789) Dictyostelium discoideum cDNA clone:dda40h22, 5' ... 94 2e-15 1 (BJ331449) Dictyostelium discoideum cDNA clone:dda35l09, 5' ... 68 1e-07 1 (EY369517) CAXA12404.rev CAXA Helobdella robusta Subtracted ... 32 0.084 3 (CT027790) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.58 3 (BE124023) EST394148 DSIL Medicago truncatula cDNA clone pDS... 36 0.76 2 (CF069535) EST670256 MTUS Medicago truncatula cDNA clone MTU... 36 0.80 2 (CT027597) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.91 4 (BG581963) EST483700 GVN Medicago truncatula cDNA clone pGVN... 36 1.00 2 (EJ920306) 1093018623304 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.1 2 (EJ834914) 1093017612441 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.2 2 (AC189628) Brassica rapa subsp. pekinensis clone KBrS003D10,... 44 1.4 2 (AC146177) Pan troglodytes BAC clone RP43-35P5 from chromoso... 44 1.7 1 (AC145900) Pan troglodytes BAC clone RP43-40I9 from chromoso... 44 1.7 1 (AC189549) Brassica rapa subsp. pekinensis clone KBrH005C21,... 44 1.7 1 (AC005048) Homo sapiens BAC clone CTB-15P3 from 7, complete ... 44 1.7 1 (CU993804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.7 1 (CU928728) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.7 1 (CU914425) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.7 1 (CU914311) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.7 1 (AC232535) Brassica rapa subsp. pekinensis clone KBrB091M11,... 44 1.7 1 (AC219904) Bos taurus clone CH240-318M3, WORKING DRAFT SEQUE... 44 1.7 1 (AC164375) Bos taurus clone CH240-149A11, *** SEQUENCING IN ... 44 1.7 1 (ED774500) GM_WBb0150O02.f GM_WBb Glycine max genomic clone ... 44 1.7 1 (DX896395) KBrH026N17R KBrH, Brassica rapa HindIII BAC libra... 44 1.7 1 (DX896391) KBrH026N15R KBrH, Brassica rapa HindIII BAC libra... 44 1.7 1 (DX892975) KBrH021K06R KBrH, Brassica rapa HindIII BAC libra... 44 1.7 1 (CC531347) CH240_408G2.T7 CHORI-240 Bos taurus genomic clone... 44 1.7 1 (B71190) CIT-HSP-2028K12.TFB CIT-HSP Homo sapiens genomic cl... 44 1.7 1 (AG167777) Pan troglodytes DNA, clone: RP43-035P05.T7. 44 1.7 1 (BI462977) 603204189F1 NIH_MGC_97 Homo sapiens cDNA clone IM... 44 1.7 1 (GE339516) hzjkab0_003039.z1.scf cDNA library of Bruguiera g... 44 1.7 1 (CT025892) Zebrafish DNA sequence from clone DKEY-26I16 in l... 38 1.8 3 (AY953017) Platysmacheilus longibarbatus cytochrome b (cytb)... 32 2.1 3 (CU830098) A BAC library has been constructed from PN40024 g... 40 2.2 2 (AC125217) Mus musculus BAC clone RP23-112D14 from 8, comple... 40 2.7 2 (AC171733) Solanum lycopersicum chromosome 11 clone C11HBa00... 32 3.4 2 (CT497801) A BAC library has been constructed from cultivar ... 32 3.5 2 (CU457805) S.lycopersicum DNA sequence from clone SL_MboI-12... 32 3.5 2 (EJ819043) 1093017529374 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.3 2 (DY683252) TTEAJ91THC Tetrahymena thermophila EST library, c... 36 4.6 2 (CX575708) TTE00017553 Amplicon Express - Conjugative Form T... 36 5.4 2 (BX005339) Zebrafish DNA sequence from clone DKEY-71C4 in li... 42 6.6 1 (AM484008) Vitis vinifera contig VV78X172617.2, whole genome... 42 6.6 1 (AM446303) Vitis vinifera contig VV78X167278.2, whole genome... 42 6.6 1 (AM429766) Vitis vinifera contig VV78X151638.7, whole genome... 42 6.6 1 (AR556011) Sequence 11142 from patent US 6747137. 42 6.6 1 (AC155920) Monodelphis domestica, clone XX-22D10, complete s... 42 6.6 1 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 42 6.6 1 (AC126896) Rattus norvegicus clone CH230-300E3, *** SEQUENCI... 42 6.6 1 (AC118968) Rattus norvegicus clone CH230-184P18, *** SEQUENC... 42 6.6 1 (AC095607) Rattus norvegicus clone CH230-8N21, WORKING DRAFT... 42 6.6 1 (AC201514) Strongylocentrotus purpuratus clone R3-3085H5, WO... 42 6.6 1 (AC200991) Strongylocentrotus purpuratus clone R3-12C11, WOR... 42 6.6 1 (AC192510) Cavia porcellus clone CH234-497A8, WORKING DRAFT ... 42 6.6 1 (AC180667) Strongylocentrotus purpuratus clone R3-3089K13, W... 42 6.6 1 (AC180382) Strongylocentrotus purpuratus clone R3-3113M19, W... 42 6.6 1 (AC180288) Strongylocentrotus purpuratus clone R3-3122E19, W... 42 6.6 1 (AC177372) Strongylocentrotus purpuratus clone R3-52M10, WOR... 42 6.6 1 (ET763276) CHO_OF158xf21r1.ab1 CHO_OF Nicotiana tabacum geno... 42 6.6 1 (ER502310) 1093015406522 Global-Ocean-Sampling_GS-35-01-01-1... 42 6.6 1 (EK566121) 1095521042527 Global-Ocean-Sampling_GS-32-01-01-1... 42 6.6 1 (EK410524) 1095505162055 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.6 1 (ED799180) MG__Ba0050I21r MG__Ba Mimulus guttatus genomic, g... 42 6.6 1 (BH923775) odi80f01.b1 B.oleracea002 Brassica oleracea genom... 42 6.6 1 (EH013206) USDA-FP_186029 Lysiphlebus testaceipes adult whol... 42 6.6 1 (AU034911) Dictyostelium discoideum slug cDNA, clone SLE682. 42 6.6 1 (C83890) Dictyostelium discoideum slug cDNA, clone SSA528. 42 6.6 1 (BM161583) EST564106 PyBS Plasmodium yoelii yoelii cDNA clon... 42 6.6 1 (BF297667) 054PbF04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 42 6.6 1 (FE426550) RM05518.5prime RM Drosophila melanogaster mixed e... 42 6.6 1 (FD376962) CBPN7982.g1 CBPN: Subtracted channel catfish cDNA... 42 6.6 1 (FD366351) CBPN44922.g1 CBPN: Subtracted channel catfish cDN... 42 6.6 1 (FD350730) CBPN29177.g1 CBPN: Subtracted channel catfish cDN... 42 6.6 1 (FD324692) CBPN12039.g1 CBPN: Subtracted channel catfish cDN... 42 6.6 1 (FD188705) CBZA20575.g1 CBZA: Normalized channel catfish cDN... 42 6.6 1 (FD187385) CBZA19839.g1 CBZA: Normalized channel catfish cDN... 42 6.6 1 (FD177926) CBZA14364.g1 CBZA: Normalized channel catfish cDN... 42 6.6 1 (FD137907) CBZB8840.g1 CBZB: Normalized channel catfish cDNA... 42 6.6 1 (FD135900) CBZB7642.g1 CBZB: Normalized channel catfish cDNA... 42 6.6 1 (FD062460) CBPO7515.g1 CBPO: Normalized channel catfish cDNA... 42 6.6 1 (AW792969) CM0-UM0001-060300-270-d05 UM0001 Homo sapiens cDN... 42 6.6 1 (DE334928) Bombyx mori genomic DNA, BAC clone:BET_016_N09. 34 7.0 2 (AX652646) Sequence 2516 from Patent WO03000898. 36 8.2 2 (AX508915) Sequence 3610 from Patent WO0216655. 36 8.2 2 (AP001798) Homo sapiens genomic DNA, chromosome 18q12 clone:... 40 8.6 2 (DB770606) Apis mellifera head cDNA, RIKEN full-length enric... 36 8.7 2 (DB777177) Apis mellifera head cDNA, RIKEN full-length enric... 36 8.9 2 (AC087683) Homo sapiens chromosome 18, clone RP11-687E1, com... 40 9.2 2 (AC090239) Homo sapiens chromosome 18, clone RP11-746A20, co... 40 9.3 2
>(BJ422140) Dictyostelium discoideum cDNA clone:ddv45b01, 5' end, single read. Length = 174
Score = 149 bits (75), Expect = 4e-32 Identities = 75/75 (100%) Strand = Plus / Plus
Query: 17 catccttttcaattaaattcatttgtatatatataacttcacacacctcaaaacaattta 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 catccttttcaattaaattcatttgtatatatataacttcacacacctcaaaacaattta 66
Query: 77 tttgattatttaaat 91 ||||||||||||||| Sbjct: 67 tttgattatttaaat 81
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 167,458,385 Number of extensions: 11871177 Number of successful extensions: 3770940 Number of sequences better than 10.0: 129 Length of query: 185 Length of database: 98,766,808,389 Length adjustment: 22 Effective length of query: 163 Effective length of database: 96,605,827,083 Effective search space: 15746749814529 Effective search space used: 15746749814529 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7.27 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
8 |
VF (FL, S) |
0 |
AH (FL, L) |
17 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
15 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |