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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16335-1
Contig ID Contig-U16335-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16335-1 (Contig-U16335-1Q) /CSM_Contig/Contig-U16335-1Q.Seq.d
GATGANCANCAAGATGAACAAAATTCAAATAGTANTAGTATTAATACATC
AAGTAGTAGTATAANTAGGCCAAGAAAAGGTTCCACTGTACAATATTTAA
ATAGAATTAATACTTGTCGTAGACCANGTTCTTGGACAAATAATAATAGA
ATTCNACAACAACAACATCACCACCACCACCACCAACAACAACAACAACA
TCAACAACATCAACAACAACAATCATCTTCATCTGAATCAAATTCAAGCC
TTACGTCAAGCCCTCAAAAGAGATTAAATAGTGTAAATGGTTTAGAATCA
TATGAAGAGGGTAAAAATGTAAATGAAATTTATTCTTCATTAAAAGAAGA
ATCTTCAAAACTACCTAAAAAGAGTTCATTAAATCGACAAATGACAATTG
TAAATAGTAATAATATAGGTAATGGTGATGAAAAGAATAGCGATTGTACA
ACAAGTGATGAAGATGAAGAATTAAAAATTTCAAAACCAATTATAAGATC
TTCTTCACTTGGAAATAGATTAACAGCACCAGGAAGACAATTAAA
Gap no gap
Contig length 545
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4205354
End point 4205898
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U16335
List of clone(s) 

est1=AHQ528Z,1,545
Translated Amino Acid sequence 
DXXQDEQNSNSXSINTSSSSIXRPRKGSTVQYLNRINTCRRPXSWTNNNRIXQQQHHHHH
HQQQQQHQQHQQQQSSSSESNSSLTSSPQKRLNSVNGLESYEEGKNVNEIYSSLKEESSK
LPKKSSLNRQMTIVNSNNIGNGDEKNSDCTTSDEDEELKISKPIIRSSSLGNRLTAPGRQ
L
Translated Amino Acid sequence (All Frames) 
Frame A:
DXXQDEQNSNSXSINTSSSSIXRPRKGSTVQYLNRINTCRRPXSWTNNNRIXQQQHHHHH
HQQQQQHQQHQQQQSSSSESNSSLTSSPQKRLNSVNGLESYEEGKNVNEIYSSLKEESSK
LPKKSSLNRQMTIVNSNNIGNGDEKNSDCTTSDEDEELKISKPIIRSSSLGNRLTAPGRQ
L


Frame B:
mxxkmnkiqivxvlihqvvv*xgqekvplyni*ielilvvdxvlgqiiiefxnnnitttt
tnnnnninninnnnhlhlnqiqalrqalkrd*iv*mv*nhmkrvkm*mkfilh*kknlqn
ylkrvh*idk*ql*ivii*vmvmkriaivqqvmkmkn*kfqnql*dllhleid*qhqedn
*


Frame C:
*xxr*tkfk*x*y*yik**yx*akkrfhctifk*n*yls*txfldk***nsttttspppp
ptttttsttstttiifi*ikfkpyvkpskeik*ckwfrii*rg*kck*nlffikrrifkt
t*kefikstndnck***yr*w**ke*rlynk**r*riknfktnykifftwk*instrkti
k
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16335-1 (Contig-U16335-1Q)
/CSM_Contig/Contig-U16335-1Q.Seq.d
         (545 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16335-1 (Contig-U16335-1Q) /CSM_Contig/Conti...   640  0.0
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U15243-1 (Contig-U15243-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U13648-1 (Contig-U13648-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09675-1 (Contig-U09675-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09112-1 (Contig-U09112-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U15023-1 (Contig-U15023-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U14963-1 (Contig-U14963-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U12456-1 (Contig-U12456-1Q) /CSM_Contig/Conti...    36  0.054

>Contig-U16335-1 (Contig-U16335-1Q) /CSM_Contig/Contig-U16335-1Q.Seq.d
          Length = 545

 Score =  640 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus

                                                                       
Query: 223 tcatcttcatctgaatcaaattcaagccttacgtcaagccctcaaaagagattaaatagt 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcatcttcatctgaatcaaattcaagccttacgtcaagccctcaaaagagattaaatagt 282

                                                                       
Query: 283 gtaaatggtttagaatcatatgaagagggtaaaaatgtaaatgaaatttattcttcatta 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtaaatggtttagaatcatatgaagagggtaaaaatgtaaatgaaatttattcttcatta 342

                                                                       
Query: 343 aaagaagaatcttcaaaactacctaaaaagagttcattaaatcgacaaatgacaattgta 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaagaagaatcttcaaaactacctaaaaagagttcattaaatcgacaaatgacaattgta 402

                                                                       
Query: 403 aatagtaataatataggtaatggtgatgaaaagaatagcgattgtacaacaagtgatgaa 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aatagtaataatataggtaatggtgatgaaaagaatagcgattgtacaacaagtgatgaa 462

                                                                       
Query: 463 gatgaagaattaaaaatttcaaaaccaattataagatcttcttcacttggaaatagatta 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gatgaagaattaaaaatttcaaaaccaattataagatcttcttcacttggaaatagatta 522

                                  
Query: 523 acagcaccaggaagacaattaaa 545
           |||||||||||||||||||||||
Sbjct: 523 acagcaccaggaagacaattaaa 545


 Score =  274 bits (138), Expect = 1e-73
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgancancaagatgaacaaaattcaaatagtantagtattaatacatcaagtagtagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgancancaagatgaacaaaattcaaatagtantagtattaatacatcaagtagtagt 60

                                                                       
Query: 61  ataantaggccaagaaaaggttccactgtacaatatttaaatagaattaatacttgtcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataantaggccaagaaaaggttccactgtacaatatttaaatagaattaatacttgtcgt 120

                                            
Query: 121 agaccangttcttggacaaataataatagaatt 153
           |||||||||||||||||||||||||||||||||
Sbjct: 121 agaccangttcttggacaaataataatagaatt 153


>Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Contig-U11408-1Q.Seq.d
          Length = 2056

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 454  agtgatgaagatgaagaattaaaa 477
            ||||||||||||||||||| ||||
Sbjct: 1372 agtgatgaagatgaagaatcaaaa 1395


>Contig-U15243-1 (Contig-U15243-1Q) /CSM_Contig/Contig-U15243-1Q.Seq.d
          Length = 1668

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 398 ttgtaaatagtaataatat 416
           |||||||||||||||||||
Sbjct: 751 ttgtaaatagtaataatat 733


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,408
Number of Sequences: 8402
Number of extensions: 16408
Number of successful extensions: 2340
Number of sequences better than 10.0: 286
length of query: 545
length of database: 8,075,542
effective HSP length: 16
effective length of query: 529
effective length of database: 7,941,110
effective search space: 4200847190
effective search space used: 4200847190
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.28
Homology vs DNA 
Query= Contig-U16335-1 (Contig-U16335-1Q) /CSM_Contig/Contig-U16335-1Q.Seq.d
         (545 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...   553   0.0    3
(BJ357670) Dictyostelium discoideum cDNA clone:dda64g07, 3' ...   553   0.0    2
(BJ354395) Dictyostelium discoideum cDNA clone:dda53a13, 3' ...   640   e-179  1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.006  9
(CP000671) Haemophilus influenzae PittEE, complete genome.         52   0.022  1
(EA442218) Sequence 4 from patent US 7335813.                      38   0.023  3
(CS299566) Sequence 4 from Patent EP1662000.                       38   0.023  3
(EA442219) Sequence 5 from patent US 7335813.                      38   0.023  3
(CS299567) Sequence 5 from Patent EP1662000.                       38   0.023  3
(AC186385) Pan troglodytes BAC clone CH251-683B7 from chromo...    50   0.086  1
(AC161018) Pan troglodytes BAC clone CH251-345F11 from chrom...    50   0.086  1
(DJ441092) Breast Cancer Biomarkers.                               50   0.086  1
(CS200143) Sequence 24 from Patent WO2005106044.                   50   0.086  1
(BC017944) Homo sapiens, clone IMAGE:4289218, mRNA.                50   0.086  1
(AP003475) Homo sapiens genomic DNA, chromosome 8q23, clone:...    50   0.086  1
(AC021937) Homo sapiens chromosome 8, clone RP11-812B1, comp...    50   0.086  1
(AC199667) Nomascus leucogenys leucogenys clone CH271-70M18,...    50   0.086  1
(EK509681) 1095515472266 Global-Ocean-Sampling_GS-32-01-01-1...    50   0.086  1
(EK479647) 1095469507678 Global-Ocean-Sampling_GS-32-01-01-1...    50   0.086  1
(DB314195) Homo sapiens cDNA clone CTONG2022332, 3' end, mRN...    50   0.086  1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         38   0.13   8
(FD427896) Atr01b_48_B03_C010.g1 FGP Male Amborella trichopo...    34   0.15   3
(AM473261) Vitis vinifera contig VV78X121480.13, whole genom...    38   0.21   4
(AM920437) Penicillium chrysogenum Wisconsin 54-1255 complet...    48   0.34   1
(AF117611) Dictyostelium discoideum DosA protein (dosA) gene...    48   0.34   1
(CJ405133) Molgula tectiformis cDNA, gonad clone:mtgd022h12,...    34   0.51   3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.68   8
(CJ363782) Molgula tectiformis cDNA, cleaving embryo clone:m...    34   0.81   3
(CF801441) rj66c05.y1 Meloidogyne chitwoodi female SL1 pGEM ...    32   0.91   3
(ER593456) 1093016210691 Global-Ocean-Sampling_GS-36-01-01-2...    36   0.94   2
(AJ928056) Theileria annulata EST, clone tam011e07_p1k.            38   0.99   2
(AC200269) Pongo abelii BAC clone CH276-296M6 from chromosom...    46   1.3    1
(AC176933) Strongylocentrotus purpuratus clone R3-33L24, WOR...    46   1.3    1
(AC176932) Strongylocentrotus purpuratus clone R3-33L13, WOR...    46   1.3    1
(CZ796723) OC__Ba0166B19.f OC__Ba Oryza coarctata genomic cl...    46   1.3    1
(CZ766842) OC__Ba0122J03.r OC__Ba Oryza coarctata genomic cl...    46   1.3    1
(CZ765219) OC__Ba0120G03.f OC__Ba Oryza coarctata genomic cl...    46   1.3    1
(CZ721963) OC__Ba0047K13.r OC__Ba Oryza coarctata genomic cl...    46   1.3    1
(DN310915) PL06008B2A03 cDNA from juvenile hermaphodites Sch...    46   1.3    1
(AE017226) Treponema denticola ATCC 35405, complete genome.        46   1.3    1
(AC190314) Macaca mulatta clone CH250-175J4, WORKING DRAFT S...    34   2.6    2
(AM430304) Vitis vinifera contig VV78X205100.38, whole genom...    30   3.5    5
(AF362373) Dictyostelium discoideum histidine kinase DhkL (d...    34   3.8    4
(AM439135) Vitis vinifera contig VV78X183630.5, whole genome...    38   4.2    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   4.4    7
(AL035475) Plasmodium falciparum MAL4P2.                           34   4.5    7
(AC090466) Homo sapiens chromosome 8, clone RP11-619O19, com...    40   4.6    3
(AJ314596) Rice tungro bacilliform virus complete genome, is...    44   5.3    1
(AJ292233) Rice tungro bacilliform virus, genomic fragment, ...    44   5.3    1
(CR974584) Mouse DNA sequence from clone RP23-99K9 on chromo...    44   5.3    1
(AC194781) Rhesus Macaque  BAC CH250-324G7 () complete seque...    44   5.3    1
(AM455189) Vitis vinifera contig VV78X202659.5, whole genome...    44   5.3    1
(AC213083) Populus trichocarpa clone POP003-F15, complete se...    44   5.3    1
(FB292943) Sequence 16 from Patent WO2007096399.                   44   5.3    1
(FB292386) Sequence 16 from Patent EP1845162.                      44   5.3    1
(EA618742) Sequence 16 from patent US 7364878.                     44   5.3    1
(EA287218) Sequence 16 from patent US 7267965.                     44   5.3    1
(EA095327) Sequence 16 from patent US 7192741.                     44   5.3    1
(DL141350) Novel sequence for improving expression of nuclei...    44   5.3    1
(DI165920) Novel sequence for improving expression of nuclei...    44   5.3    1
(DI062875) DNA sequences comprising gene transcription regul...    44   5.3    1
(DD252064) A method for simultaneous production of multiple ...    44   5.3    1
(DD093828) DNA sequences comprising gene transcription regul...    44   5.3    1
(CS810670) Sequence 16 from Patent EP1842919.                      44   5.3    1
(CS791225) Sequence 16 from Patent EP1829972.                      44   5.3    1
(CS790956) Sequence 16 from Patent EP1829971.                      44   5.3    1
(CS645222) Sequence 16 from Patent EP1808488.                      44   5.3    1
(CS632645) Sequence 16 from Patent EP1806407.                      44   5.3    1
(CS418934) Sequence 16 from Patent WO2006048459.                   44   5.3    1
(CS348844) Sequence 16 from Patent WO2006005718.                   44   5.3    1
(CS208853) Sequence 16 from Patent EP1600510.                      44   5.3    1
(CQ757712) Sequence 16 from Patent WO2003106684.                   44   5.3    1
(CQ755515) Sequence 16 from Patent WO2003106674.                   44   5.3    1
(BD426631) The Nucleotide Sequence of the Haemophilus influe...    44   5.3    1
(BD425293) The Nucleotide Sequence of the Haemophilus influe...    44   5.3    1
(AX764546) Sequence 16 from Patent WO03004704.                     44   5.3    1
(AR632719) Sequence 1 from patent US 6846651.                      44   5.3    1
(AR274513) Sequence 1 from patent US 6506581.                      44   5.3    1
(AY191785) Nothomyrmecia macrops cytochrome b gene, partial ...    44   5.3    1
(AC104457) Homo sapiens chromosome 1 clone RP5-837M10, compl...    44   5.3    1
(AC156726) Bos taurus clone CH240-58J18, WORKING DRAFT SEQUE...    44   5.3    1
(AC100894) Mus musculus clone RP23-69C6, LOW-PASS SEQUENCE S...    44   5.3    1
(AC204195) Procavia capensis clone CH280-195F20, WORKING DRA...    44   5.3    1
(AC195281) Gallus gallus chromosome 9 clone CH261-178C24, **...    44   5.3    1
(AC011265) Homo sapiens clone RP11-3P15, WORKING DRAFT SEQUE...    44   5.3    1
(ET627792) fcg3x.308950f03 C. graminicola genomic sequence G...    44   5.3    1
(ET587353) fcg3x.320950c03 C. graminicola genomic sequence G...    44   5.3    1
(ET542086) fcg3x.307350d07.f C. graminicola genomic sequence...    44   5.3    1
(ET442883) fcg2x.pk135.g8 C. graminicola genomic sequence Gl...    44   5.3    1
(ET038731) MUGQ_CH252P342E09T7_CP636_043 CHORI-252 Vervet Mo...    44   5.3    1
(ER604482) 1093016267358 Global-Ocean-Sampling_GS-36-01-01-2...    44   5.3    1
(ER343243) 1092344361076 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.3    1
(ER328832) 1092344238694 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.3    1
(EK291610) 1095462332352 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK183719) 1095458134930 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK026865) 1092955374376 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(CR511181) mth4-28A7RM3 BAC end, cultivar Jemalong A17 of Me...    44   5.3    1
(ES303898) -47-A11 Bermudagrass Normalized cDNA Library Cyno...    44   5.3    1
(DW251741) UI-S-GB0-aac-o-16-0-UI.s1 UI-S-GB0 Euprymna scolo...    44   5.3    1
(FG909482) UCRVU08_CCNS6699_g1 Cowpea IT97K-461-4 Mixed Tiss...    44   5.3    1
(FG856368) UCRVU05_CCNN20639_g1 Cowpea IT84S-2049 Mixed Tiss...    44   5.3    1
(FE243446) CAPG7648.fwd CAPG Naegleria gruberi amoeba stage ...    44   5.3    1
(EY502726) CBBP6523.fwd CBBP Hirudo medicinalis hermaphrodit...    44   5.3    1
(EY502725) CBBP6523.rev CBBP Hirudo medicinalis hermaphrodit...    44   5.3    1
(EY493532) CBBP19518.fwd CBBP Hirudo medicinalis hermaphrodi...    44   5.3    1
(EY493531) CBBP19518.rev CBBP Hirudo medicinalis hermaphrodi...    44   5.3    1
(EY489048) CBBP16804.fwd CBBP Hirudo medicinalis hermaphrodi...    44   5.3    1
(EY489047) CBBP16804.rev CBBP Hirudo medicinalis hermaphrodi...    44   5.3    1
(EX620582) 255411970 Pea aphid whole body normalized full le...    44   5.3    1
(L42023) Haemophilus influenzae Rd KW20, complete genome.          44   5.3    1
(BZ344540) hq87a09.b1 WGS-SbicolorF (JM107 adapted methyl fi...    34   5.3    2
(AC041039) Homo sapiens chromosome 8, clone RP11-273P3, comp...    40   5.5    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   6.1    7
(CU773995) A BAC library has been constructed from PN40024 g...    40   6.7    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   6.7    6
(AB020755) Arabidopsis thaliana genomic DNA, chromosome 5, P...    38   6.8    4
(ER588592) 1093016185727 Global-Ocean-Sampling_GS-36-01-01-2...    30   7.2    3
(EL495794) F03_PFBAMHI-S-T3-PLATE12A.AB1 Blood stage Plasmod...    32   7.4    3
(BJ433705) Dictyostelium discoideum cDNA clone:ddv22o15, 3' ...    40   7.7    2
(DN312371) PL06012B2A04 cDNA from juvenile hermaphodites Sch...    36   8.1    2
(EJ771811) 1092970300564 Global-Ocean-Sampling_GS-30-02-01-1...    30   8.5    3
(EJ757021) 1092963089329 Global-Ocean-Sampling_GS-30-02-01-1...    30   8.8    3
(CT557382) A BAC library has been constructed from cultivar ...    40   8.9    2
(EJ830379) 1093017578829 Global-Ocean-Sampling_GS-30-02-01-1...    36   8.9    2
(EJ870076) 1093018341641 Global-Ocean-Sampling_GS-30-02-01-1...    36   9.4    2
(AC179261) Strongylocentrotus purpuratus clone R3-42O22, WOR...    32   9.4    2
(AU062187) Dictyostelium discoideum slug cDNA, clone SLI202.       34   9.4    2
(AZ687192) ENTJI28TF Entamoeba histolytica Sheared DNA Entam...    38   9.5    2
(AZ547737) ENTFF91TR Entamoeba histolytica Sheared DNA Entam...    38   9.5    2
(AC168681) Strongylocentrotus purpuratus clone R3-3014P16, W...    32   9.6    2
(ER477531) 1093015246099 Global-Ocean-Sampling_GS-35-01-01-1...    40   9.6    2
(AC179158) Strongylocentrotus purpuratus clone R3-4012P3, WO...    32   9.8    2

>(AC117070) Dictyostelium discoideum chromosome 2 map 2097701-2233941
             strain AX4, complete sequence.
          Length = 136240

 Score =  553 bits (279), Expect(3) = 0.0
 Identities = 279/279 (100%)
 Strand = Plus / Minus


Query: 223   tcatcttcatctgaatcaaattcaagccttacgtcaagccctcaaaagagattaaatagt 282
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20581 tcatcttcatctgaatcaaattcaagccttacgtcaagccctcaaaagagattaaatagt 20522


Query: 283   gtaaatggtttagaatcatatgaagagggtaaaaatgtaaatgaaatttattcttcatta 342
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521 gtaaatggtttagaatcatatgaagagggtaaaaatgtaaatgaaatttattcttcatta 20462


Query: 343   aaagaagaatcttcaaaactacctaaaaagagttcattaaatcgacaaatgacaattgta 402
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20461 aaagaagaatcttcaaaactacctaaaaagagttcattaaatcgacaaatgacaattgta 20402


Query: 403   aatagtaataatataggtaatggtgatgaaaagaatagcgattgtacaacaagtgatgaa 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20401 aatagtaataatataggtaatggtgatgaaaagaatagcgattgtacaacaagtgatgaa 20342


Query: 463   gatgaagaattaaaaatttcaaaaccaattataagatct 501
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 20341 gatgaagaattaaaaatttcaaaaccaattataagatct 20303

 Score =  274 bits (138), Expect(3) = 0.0
 Identities = 148/153 (96%)
 Strand = Plus / Minus


Query: 1     gatgancancaagatgaacaaaattcaaatagtantagtattaatacatcaagtagtagt 60
             ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 20803 gatgaacaacaagatgaacaaaattcaaatagtactagtattaatacatcaagtagtagt 20744


Query: 61    ataantaggccaagaaaaggttccactgtacaatatttaaatagaattaatacttgtcgt 120
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20743 ataactaggccaagaaaaggttccactgtacaatatttaaatagaattaatacttgtcgt 20684


Query: 121   agaccangttcttggacaaataataatagaatt 153
             |||||| ||||||||||||||||||||||||||
Sbjct: 20683 agaccaagttcttggacaaataataatagaatt 20651

 Score = 95.6 bits (48), Expect(3) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Minus


Query: 498   atcttcttcacttggaaatagattaacagcaccaggaagacaattaaa 545
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19208 atcttcttcacttggaaatagattaacagcaccaggaagacaattaaa 19161

 Score = 34.2 bits (17), Expect(7) = 3.4
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 456   tgatgaagatgaagaat 472
             |||||||||||||||||
Sbjct: 62996 tgatgaagatgaagaat 62980

 Score = 30.2 bits (15), Expect(7) = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 472  ttaaaaatttcaaaa 486
            |||||||||||||||
Sbjct: 1839 ttaaaaatttcaaaa 1825

 Score = 30.2 bits (15), Expect(7) = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 47    catcaagtagtagta 61
             |||||||||||||||
Sbjct: 96287 catcaagtagtagta 96273

 Score = 28.2 bits (14), Expect(7) = 3.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 387   acaaatgacaattg 400
             ||||||||||||||
Sbjct: 64922 acaaatgacaattg 64909

 Score = 26.3 bits (13), Expect(7) = 3.4
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 403   aatagtaataata 415
             |||||||||||||
Sbjct: 64654 aatagtaataata 64642

 Score = 26.3 bits (13), Expect(7) = 3.4
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 139   aataataatagaa 151
             |||||||||||||
Sbjct: 65946 aataataatagaa 65934

 Score = 26.3 bits (13), Expect(7) = 3.4
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 19     caaaattcaaata 31
              |||||||||||||
Sbjct: 131597 caaaattcaaata 131585

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 640,790,185
Number of extensions: 41967377
Number of successful extensions: 3700264
Number of sequences better than 10.0: 132
Length of query: 545
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 522
Effective length of database: 96,507,600,660
Effective search space: 50376967544520
Effective search space used: 50376967544520
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U16335-1 (Contig-U16335-1Q) /CSM_Contig/Contig-U16335-1Q.Seq.d
         (545 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_7(AC117070|pid:none) Dictyostelium discoideum chromosom...   178   9e-44
AL844509_580(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.9

>AC117070_7(AC117070|pid:none) Dictyostelium discoideum chromosome 2
            map 2097701-2233941 strain AX4, complete sequence.
          Length = 1140

 Score =  178 bits (451), Expect = 9e-44
 Identities = 99/174 (56%), Positives = 101/174 (58%)
 Frame = +1

Query: 1    DXXQDEQXXXXXXXXXXXXXXXRPRKGSTVQYLNRINTCRRPXSWTNNNRIXXXXXXXXX 180
            D  QDEQ               RPRKGSTVQYLNRINTCRRP SWTNNNRI
Sbjct: 545  DEQQDEQNSNSTSINTSSSSITRPRKGSTVQYLNRINTCRRPSSWTNNNRIKQQQHHHHH 604

Query: 181  XXXXXXXXXXXXXXXXXXXXXXXXXXXPQKRLNSVNGLESYEEGKNVNEIYXXXXXXXXX 360
                                       PQKRLNSVNGLESYEEGKNVNEIY
Sbjct: 605  HQQQQQHQQHQQQQSSSSESNSSLTSSPQKRLNSVNGLESYEEGKNVNEIYSSLKEESSK 664

Query: 361  XXXXXXXNRQMTIVNSNNIGNGDEKNSDCTTSDEDEELKISKPIIRSSSLGNRL 522
                   NRQMTIVNSNNIGNGDEKNSDCTTSDEDEELKISKPIIRS+S+   L
Sbjct: 665  LPKKSSLNRQMTIVNSNNIGNGDEKNSDCTTSDEDEELKISKPIIRSTSVNEIL 718

 Score = 33.5 bits (75), Expect = 3.7
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 487  PIIRSSSLGNRLTAPGRQL 543
            P   SSSLGNRLTAPGRQL
Sbjct: 1073 PSSSSSSLGNRLTAPGRQL 1091

Lambda     K      H
   0.307    0.127    0.359

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 525,983,317
Number of extensions: 6867587
Number of successful extensions: 13682
Number of sequences better than 10.0: 2
Number of HSP's gapped: 13598
Number of HSP's successfully gapped: 3
Length of query: 181
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 61
Effective length of database: 668,971,921
Effective search space: 40807287181
Effective search space used: 40807287181
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U16335-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0