| Contig-U16333-1 |
| Contig ID |
Contig-U16333-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
2586 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
2128090 |
| End point |
2125505 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
60 |
| Number of EST |
96 |
| Link to clone list |
U16333 |
| List of clone(s) |
est1=CHO671F,1,401
est2=CHS395F,57,699
est3=AHF324F,59,672
est4=CHS477F,65,635
est5=CHJ125F,71,698
est6=SHF144F,80,696
est7=AHL303F,86,697
est8=CHG382F,98,641
est9=CHH791F,107,699
est10=CHJ322F,107,739
est11=CHO280F,107,738
est12=AHM266F,112,803
est13=CHK569F,114,701
est14=CHJ438F,116,698
est15=CHM140F,116,696
est16=CHQ875F,147,698
est17=CHS330F,150,787
est18=CHS430F,150,494
est19=CHP101F,160,742
est20=CHO806F,161,783
est21=CHQ321F,170,698
est22=CHM571F,171,414
est23=CHR283F,172,811
est24=CHL473F,173,700
est25=CHP553F,186,698
est26=CHP124F,202,865
est27=AHM661F,280,769
est28=CHJ505F,308,913
est29=CHR809F,308,988
est30=AHI152F,342,813
est31=SHJ588F,343,986
est32=AHI234F,347,550
est33=AHH441F,351,987
est34=CHG739F,351,968
est35=CHR237F,374,988
est36=AHM471F,828,1467
est37=SFH814F,1326,1884
est38=SFI414F,1362,1682
est39=SSC548F,1435,2108
est40=SLE382F,1477,2102
est41=SSJ359Z,1654,2580
est42=SSA757F,1725,1999
est43=CHF836Z,1749,2421
est44=CHS330Z,1797,2556
est45=CHI503Z,1825,2471
est46=AHM661Z,1826,2573
est47=CHS395Z,1829,2556
est48=CHL473Z,1852,2437
est49=AHF324Z,1853,2573
est50=AHI234Z,1854,2550
est51=AHM266Z,1854,2573
est52=CHM140Z,1854,2558
est53=CHR283Z,1854,2576
est54=SHJ588Z,1855,2557
est55=CHJ322Z,1856,2516
est56=CHQ321Z,1860,2558
est57=AHQ573Z,1862,2325
est58=SSC357Z,1871,2586
est59=SSC459E,1882,2586
est60=SHL315Z,1893,2278
est61=AHI152Z,1895,2549
est62=SHF144Z,1899,2437
est63=AHM471Z,1902,2573
est64=CHP124Z,1902,2556
est65=CHJ125Z,1903,2577
est66=CHS477Z,1903,2562
est67=AHE556Z,1904,2465
est68=AHH441Z,1904,2565
est69=CHM571Z,1904,2478
est70=CHO806Z,1904,2544
est71=AHO867Z,1905,2347
est72=CHR237Z,1905,2568
est73=CHR809Z,1905,2577
est74=CHG743Z,1906,2436
est75=CHL891Z,1906,2476
est76=CHQ567Z,1906,2438
est77=CHP338Z,1911,2308
est78=CHJ438Z,1914,2044
est79=AHL108Z,1922,2431
est80=CHO671Z,1928,2435
est81=CHP101Z,1928,2557
est82=AHN584Z,1932,2431
est83=AHL303Z,1940,2563
est84=CHQ875Z,1940,2577
est85=CHF525Z,2001,2462
est86=AHM380Z,2036,2433
est87=CHJ505Z,2041,2558
est88=AHP473Z,2051,2388
est89=CHK851Z,2051,2332
est90=CHK569Z,2093,2556
est91=CHP553Z,2103,2553
est92=CHH791Z,2110,2537
est93=SFI414Z,2111,2420
est94=CHS430Z,2214,2324
est95=CHO280Z,2236,2492
est96=CHG382Z,2447,2577
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 3.28 |
| Homology vs DNA |
Query= Contig-U16333-1 (Contig-U16333-1Q) /CSM_Contig/Contig-U16333-1Q.Seq.d
(2586 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ381044) Dictyostelium discoideum cDNA clone:ddc40l05, 3' ... 1118 0.0 1
(BJ336935) Dictyostelium discoideum cDNA clone:dda55n18, 5' ... 1049 0.0 4
(BJ378953) Dictyostelium discoideum cDNA clone:ddc33h10, 3' ... 831 0.0 2
(AU061476) Dictyostelium discoideum slug cDNA, clone SLE382. 706 0.0 3
(BJ386484) Dictyostelium discoideum cDNA clone:ddc58l07, 3' ... 682 0.0 2
(BJ380705) Dictyostelium discoideum cDNA clone:ddc39e01, 3' ... 680 0.0 2
(BJ385987) Dictyostelium discoideum cDNA clone:ddc56e22, 3' ... 622 0.0 2
(BJ386648) Dictyostelium discoideum cDNA clone:ddc58n23, 3' ... 618 0.0 2
(BJ355374) Dictyostelium discoideum cDNA clone:dda56i16, 3' ... 617 0.0 2
(C90964) Dictyostelium discoideum slug cDNA, clone SSJ359. 579 0.0 7
(BJ371182) Dictyostelium discoideum cDNA clone:ddc57b04, 5' ... 662 0.0 3
(BJ355026) Dictyostelium discoideum cDNA clone:dda55c18, 3' ... 569 0.0 2
(BJ407879) Dictyostelium discoideum cDNA clone:dds43o21, 3' ... 573 0.0 2
(BJ382972) Dictyostelium discoideum cDNA clone:ddc46o09, 3' ... 563 0.0 2
(BJ352596) Dictyostelium discoideum cDNA clone:dda47c10, 3' ... 575 0.0 2
(BJ334135) Dictyostelium discoideum cDNA clone:dda45b12, 5' ... 664 0.0 2
(BJ396785) Dictyostelium discoideum cDNA clone:dds43o21, 5' ... 662 0.0 2
(BJ350849) Dictyostelium discoideum cDNA clone:dda41p05, 3' ... 563 0.0 2
(BJ382438) Dictyostelium discoideum cDNA clone:ddc44b20, 3' ... 573 0.0 2
(C90292) Dictyostelium discoideum slug cDNA, clone SSI756. 579 0.0 2
(BJ365451) Dictyostelium discoideum cDNA clone:ddc35n09, 5' ... 622 0.0 2
(C84152) Dictyostelium discoideum slug cDNA, clone SSC357. 573 0.0 3
(BJ350685) Dictyostelium discoideum cDNA clone:dda40o13, 3' ... 523 0.0 2
(BJ371022) Dictyostelium discoideum cDNA clone:ddc56i10, 5' ... 486 0.0 3
(BJ355421) Dictyostelium discoideum cDNA clone:dda57c05, 3' ... 595 0.0 2
(BJ388767) Dictyostelium discoideum cDNA clone:dds16l04, 5' ... 591 0.0 6
(BJ386050) Dictyostelium discoideum cDNA clone:ddc57b04, 3' ... 513 0.0 2
(BJ355079) Dictyostelium discoideum cDNA clone:dda55n18, 3' ... 507 0.0 2
(BJ382767) Dictyostelium discoideum cDNA clone:ddc45f24, 3' ... 529 0.0 2
(BJ350197) Dictyostelium discoideum cDNA clone:dda39f04, 3' ... 563 0.0 2
(BJ385851) Dictyostelium discoideum cDNA clone:ddc56i10, 3' ... 513 0.0 2
(BJ383200) Dictyostelium discoideum cDNA clone:ddc52o05, 3' ... 490 0.0 2
(BJ383923) Dictyostelium discoideum cDNA clone:ddc47m17, 3' ... 507 0.0 2
(BJ352686) Dictyostelium discoideum cDNA clone:dda47g13, 3' ... 486 0.0 2
(BJ384904) Dictyostelium discoideum cDNA clone:ddc51l02, 3' ... 486 0.0 2
(BJ385187) Dictyostelium discoideum cDNA clone:ddc54j05, 3' ... 533 0.0 2
(BJ367033) Dictyostelium discoideum cDNA clone:ddc41i01, 5' ... 513 0.0 3
(BJ386625) Dictyostelium discoideum cDNA clone:ddc58j20, 3' ... 505 0.0 3
(BJ385615) Dictyostelium discoideum cDNA clone:ddc55e17, 3' ... 480 0.0 2
(C84188) Dictyostelium discoideum slug cDNA, clone SSC459. 561 0.0 3
(BJ381064) Dictyostelium discoideum cDNA clone:ddc40a07, 3' ... 472 0.0 2
(BJ354259) Dictyostelium discoideum cDNA clone:dda53f01, 3' ... 525 0.0 2
(BJ385685) Dictyostelium discoideum cDNA clone:ddc55f20, 3' ... 513 0.0 2
(BJ383134) Dictyostelium discoideum cDNA clone:ddc52a01, 3' ... 505 0.0 2
(BJ354131) Dictyostelium discoideum cDNA clone:dda52j18, 3' ... 460 0.0 2
(BJ355818) Dictyostelium discoideum cDNA clone:dda58f09, 3' ... 505 0.0 2
(BJ354305) Dictyostelium discoideum cDNA clone:dda53o01, 3' ... 470 0.0 2
(BJ385061) Dictyostelium discoideum cDNA clone:ddc51m18, 3' ... 876 0.0 1
(BJ385999) Dictyostelium discoideum cDNA clone:ddc56h20, 3' ... 561 0.0 2
(BJ382964) Dictyostelium discoideum cDNA clone:ddc46n07, 3' ... 569 0.0 2
(BJ406152) Dictyostelium discoideum cDNA clone:dds34g11, 3' ... 862 0.0 1
(BJ353259) Dictyostelium discoideum cDNA clone:dda49c18, 3' ... 470 0.0 2
(BJ349443) Dictyostelium discoideum cDNA clone:dda36c15, 3' ... 488 0.0 2
(BJ379577) Dictyostelium discoideum cDNA clone:ddc35f11, 3' ... 466 0.0 3
(BJ355972) Dictyostelium discoideum cDNA clone:dda58g21, 3' ... 446 0.0 2
(BJ349313) Dictyostelium discoideum cDNA clone:dda36i03, 3' ... 458 0.0 2
(BJ370116) Dictyostelium discoideum cDNA clone:ddc52o05, 5' ... 420 0.0 3
(BJ351985) Dictyostelium discoideum cDNA clone:dda45b12, 3' ... 436 0.0 2
(BJ382971) Dictyostelium discoideum cDNA clone:ddc46o08, 3' ... 486 0.0 2
(BJ385253) Dictyostelium discoideum cDNA clone:ddc54h09, 3' ... 537 0.0 2
(BJ382978) Dictyostelium discoideum cDNA clone:ddc46p10, 3' ... 468 0.0 2
(BJ385103) Dictyostelium discoideum cDNA clone:ddc51g22, 3' ... 462 0.0 2
(BJ354007) Dictyostelium discoideum cDNA clone:dda52p02, 3' ... 466 0.0 2
(BJ357909) Dictyostelium discoideum cDNA clone:dda65j01, 3' ... 412 0.0 2
(BJ356517) Dictyostelium discoideum cDNA clone:dda60f18, 3' ... 474 0.0 2
(BJ379170) Dictyostelium discoideum cDNA clone:ddc34b05, 3' ... 464 0.0 2
(BJ378911) Dictyostelium discoideum cDNA clone:ddc33a07, 3' ... 496 0.0 2
(BJ349386) Dictyostelium discoideum cDNA clone:dda36g12, 3' ... 450 0.0 2
(BJ354732) Dictyostelium discoideum cDNA clone:dda54g14, 3' ... 466 0.0 3
(BJ354364) Dictyostelium discoideum cDNA clone:dda53k07, 3' ... 426 0.0 2
(BJ381305) Dictyostelium discoideum cDNA clone:ddc41i01, 3' ... 531 0.0 2
(BJ371132) Dictyostelium discoideum cDNA clone:ddc56e22, 5' ... 412 0.0 3
(BJ336890) Dictyostelium discoideum cDNA clone:dda55c18, 5' ... 404 0.0 3
(BJ334723) Dictyostelium discoideum cDNA clone:dda47g13, 5' ... 412 0.0 2
(BJ357651) Dictyostelium discoideum cDNA clone:dda64c08, 3' ... 404 0.0 2
(BJ371527) Dictyostelium discoideum cDNA clone:ddc58l07, 5' ... 412 0.0 3
(BJ369605) Dictyostelium discoideum cDNA clone:ddc51l02, 5' ... 412 0.0 3
(BJ383259) Dictyostelium discoideum cDNA clone:ddc52l09, 3' ... 468 0.0 3
(BJ382204) Dictyostelium discoideum cDNA clone:ddc43p05, 3' ... 375 0.0 2
(BJ408549) Dictyostelium discoideum cDNA clone:dds46n03, 3' ... 492 0.0 2
(BJ357794) Dictyostelium discoideum cDNA clone:dda64a19, 3' ... 464 e-177 3
(BJ378906) Dictyostelium discoideum cDNA clone:ddc33p02, 3' ... 414 e-174 2
(BJ382013) Dictyostelium discoideum cDNA clone:ddc43i17, 3' ... 513 e-173 2
(BJ409635) Dictyostelium discoideum cDNA clone:dds42c20, 3' ... 420 e-173 2
(BJ389018) Dictyostelium discoideum cDNA clone:dds17l04, 5' ... 611 e-170 1
(BJ370053) Dictyostelium discoideum cDNA clone:ddc52a01, 5' ... 412 e-164 3
(BJ366759) Dictyostelium discoideum cDNA clone:ddc40l05, 5' ... 412 e-162 3
(BJ369547) Dictyostelium discoideum cDNA clone:ddc50o20, 5' ... 412 e-162 3
(BJ356881) Dictyostelium discoideum cDNA clone:dda61b20, 3' ... 391 e-158 2
(BJ383601) Dictyostelium discoideum cDNA clone:ddc53i13, 3' ... 502 e-154 2
(BJ381939) Dictyostelium discoideum cDNA clone:ddc43l10, 3' ... 398 e-145 2
(BJ355169) Dictyostelium discoideum cDNA clone:dda55p19, 3' ... 351 e-144 2
(BJ367683) Dictyostelium discoideum cDNA clone:ddc43i17, 5' ... 412 e-140 3
(BJ367904) Dictyostelium discoideum cDNA clone:ddc44b20, 5' ... 412 e-139 3
(BJ366120) Dictyostelium discoideum cDNA clone:ddc37f23, 5' ... 412 e-139 3
(BJ371655) Dictyostelium discoideum cDNA clone:ddc58n23, 5' ... 412 e-139 3
(BJ370880) Dictyostelium discoideum cDNA clone:ddc55f20, 5' ... 412 e-138 3
(BJ366831) Dictyostelium discoideum cDNA clone:ddc40l10, 5' ... 412 e-138 3
(BJ336189) Dictyostelium discoideum cDNA clone:dda53f01, 5' ... 412 e-138 3
(BJ366781) Dictyostelium discoideum cDNA clone:ddc40a07, 5' ... 412 e-138 3
(BJ394229) Dictyostelium discoideum cDNA clone:dds34g11, 5' ... 412 e-137 3
(BJ368379) Dictyostelium discoideum cDNA clone:ddc46o09, 5' ... 412 e-137 3
(BJ370288) Dictyostelium discoideum cDNA clone:ddc53i13, 5' ... 412 e-136 3
(BJ370435) Dictyostelium discoideum cDNA clone:ddc54j05, 5' ... 404 e-136 3
(AU072754) Dictyostelium discoideum slug cDNA, clone SSA757. 476 e-129 1
(BJ381993) Dictyostelium discoideum cDNA clone:ddc43f14, 3' ... 278 e-128 2
(BJ380330) Dictyostelium discoideum cDNA clone:ddc37f23, 3' ... 333 e-126 2
(AU071800) Dictyostelium discoideum slug cDNA, clone SSC548. 462 e-125 1
(BJ333027) Dictyostelium discoideum cDNA clone:dda41p05, 5' ... 412 e-123 3
(BJ371640) Dictyostelium discoideum cDNA clone:ddc58j20, 5' ... 412 e-121 2
(BJ365278) Dictyostelium discoideum cDNA clone:ddc34d21, 5' ... 412 e-121 2
(BJ402505) Dictyostelium discoideum cDNA clone:dds17l04, 3' ... 335 e-102 2
(BJ384851) Dictyostelium discoideum cDNA clone:ddc50o20, 3' ... 381 e-101 1
(BJ334641) Dictyostelium discoideum cDNA clone:dda47c10, 5' ... 365 6e-96 1
(BJ371528) Dictyostelium discoideum cDNA clone:ddc58l08, 5' ... 220 1e-63 2
(BJ381114) Dictyostelium discoideum cDNA clone:ddc40l10, 3' ... 232 5e-56 1
(BJ386485) Dictyostelium discoideum cDNA clone:ddc58l08, 3' ... 127 2e-24 1
(BJ368680) Dictyostelium discoideum cDNA clone:ddc47m17, 5' ... 82 2e-16 2
(EY329328) CAWY2258.rev CAWY Helobdella robusta Subtracted E... 44 2e-04 3
(FE765324) CCAG2578.b5 CCAG Petrolisthes cinctipes heart, gi... 48 4e-04 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.001 14
(BJ337199) Dictyostelium discoideum cDNA clone:dda56i16, 5' ... 34 0.004 4
(BJ442512) Dictyostelium discoideum cDNA clone:ddv50j01, 3' ... 40 0.007 3
(BJ369765) Dictyostelium discoideum cDNA clone:ddc51m18, 5' ... 56 0.007 1
(AU060578) Dictyostelium discoideum slug cDNA, clone SLK495. 34 0.017 4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 40 0.018 2
(AC201011) Strongylocentrotus purpuratus clone R3-12G14, WOR... 42 0.019 8
(EB229507) PEG003-C-204664-501 Normalized Pedal-Pleural Gang... 42 0.022 2
(EY314757) CAWX25684.fwd CAWX Helobdella robusta Primary Ear... 38 0.024 5
(AC126867) Rattus norvegicus clone CH230-49B18, WORKING DRAF... 54 0.027 1
(AC095285) Rattus norvegicus clone CH230-11A8, WORKING DRAFT... 54 0.027 1
(EX163248) LY_YIT_DP1328 Dermatophagoides pteronyssinus cDNA... 54 0.027 1
(EY342040) CAWZ11492.fwd CAWZ Helobdella robusta Primary Lat... 36 0.029 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.029 10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 44 0.058 8
(BJ414885) Dictyostelium discoideum cDNA clone:ddv20a23, 5' ... 40 0.058 3
(DH063727) Oryzias latipes Fosmid clone:GOLWFno121_e14, forw... 40 0.084 2
(DH205215) Oryzias latipes Fosmid clone:GOLWFno525_p11, forw... 40 0.085 2
(DH382594) Oryzias latipes Fosmid clone:GOLWFno764_b22, forw... 40 0.086 2
(DY649308) PU4_plate26_A17 PU4 Prunus persica cDNA similar t... 52 0.11 1
(DY644472) PU3_plate38_O18 PU3 Prunus persica cDNA similar t... 52 0.11 1
(BP663205) Arabidopsis thaliana cDNA clone:RAFL21-47-C10, 3'... 38 0.14 2
(DH468911) Monosiga ovata DNA, fosmid clone: MOF-012P12, gen... 34 0.15 3
(EL364367) CCEM8878.b1_K11.ab1 CCE(LMS) endive Cichorium end... 44 0.19 2
(BJ401763) Dictyostelium discoideum cDNA clone:dds19g08, 3' ... 38 0.21 3
(AU034837) Dictyostelium discoideum slug cDNA, clone SLE566. 38 0.21 3
(BJ342638) Dictyostelium discoideum cDNA clone:dda14m24, 3' ... 38 0.21 3
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.23 8
(BJ346306) Dictyostelium discoideum cDNA clone:dda30c18, 3' ... 38 0.23 3
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.24 16
(DT505060) WS01315.B21_O02 PTxD-IL-FL-A-4 Populus trichocarp... 38 0.31 2
(BJ008043) Oryzias latipes cDNA clone:MF01SSA114H01 : 5' end... 34 0.31 2
(DH003447) Oryzias latipes Fosmid clone:GOLWFno82_m02, rever... 34 0.32 2
(DH389897) Oryzias latipes Fosmid clone:GOLWFno785_i17, forw... 34 0.32 2
(CN518273) GQ0093.B3_H17 GQ009 Populus trichocarpa x Populus... 38 0.32 2
(DH230492) Oryzias latipes Fosmid clone:GOLWFno563_i03, reve... 34 0.32 2
(AC159711) Mus musculus 10 BAC RP23-214N15 (Roswell Park Can... 50 0.42 1
(AC157090) Mus musculus 10 BAC RP24-360A19 (Roswell Park Can... 50 0.42 1
(AP001309) Arabidopsis thaliana genomic DNA, chromosome 3, P... 50 0.42 1
(AC177689) Strongylocentrotus purpuratus clone R3-1013H17, W... 50 0.42 1
(CC455560) SALK_083804.52.70.x Arabidopsis thaliana TDNA ins... 50 0.42 1
(DW660731) CNB304-H09.y1d-s SHGC-CNB2 Gasterosteus aculeatus... 50 0.42 1
(AU033941) Dictyostelium discoideum slug cDNA, clone SLB638. 38 0.52 3
(AU033950) Dictyostelium discoideum slug cDNA, clone SLB648. 38 0.56 3
(BI516839) BB160023B10E11.5 Bee Brain Normalized Library, BB... 48 0.60 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.63 7
(C25729) Dictyostelium discoideum gamete cDNA, clone FC-AX09. 38 0.68 3
(EX649583) 256733809 Pea aphid whole body normalized full le... 38 0.81 3
(DY929522) CHAZ458.b1_C19.ab1 CHA(XYZ) common wild sunflower... 44 0.94 2
(CO075597) GR__Ea36G18.r GR__Ea Gossypium raimondii cDNA clo... 36 1.1 3
(DC484916) Monosiga ovata cDNA, clone: MOC-050L10, 5'end. 38 1.2 2
(EB564274) AGENCOURT_51198824 D. virilis EST Drosophila viri... 36 1.2 2
(EY303416) CAWX16699.rev CAWX Helobdella robusta Primary Ear... 36 1.2 2
(DH047651) Oryzias latipes Fosmid clone:GOLWFno45_l21, forwa... 34 1.2 2
(C84849) Dictyostelium discoideum slug cDNA, clone SSG781. 38 1.2 2
(DQ790003) Ceratosolen bisulcatus clone CAG8 microsatellite ... 36 1.2 2
(AU060120) Dictyostelium discoideum slug cDNA, clone SLA365. 48 1.3 2
(EY338151) CAWY8828.fwd CAWY Helobdella robusta Subtracted E... 42 1.4 3
(BJ363000) Dictyostelium discoideum cDNA clone:ddc24c17, 5' ... 34 1.5 3
(EF371053) Pneumocystis jirovecii major surface glycoprotein... 48 1.7 1
(AL662888) Human DNA sequence from clone RP11-229H19 on chro... 48 1.7 1
(AC160300) Bos taurus clone CH240-86A14, WORKING DRAFT SEQUE... 48 1.7 1
(AC145541) Oryctolagus cuniculus clone LB1-145D6, WORKING DR... 48 1.7 1
(AC126588) Rattus norvegicus clone CH230-200A9, WORKING DRAF... 48 1.7 1
(AC121719) Rattus norvegicus clone CH230-124A4, *** SEQUENCI... 48 1.7 1
(AC106183) Rattus norvegicus clone CH230-62F18, *** SEQUENCI... 48 1.7 1
(FH688547) CHO_OF5092xc04r1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 1.7 1
(DH771034) Rattus norvegicus DNA, BAC clone: RNB1-355O19, 3'... 48 1.7 1
(BZ913751) CH240_54F13.TJ CHORI-240 Bos taurus genomic clone... 48 1.7 1
(EB559407) AGENCOURT_51114417 D. virilis EST Drosophila viri... 48 1.7 1
(CD230747) SS1_9_B07.b1_A012 Salt-stressed seedlings Sorghum... 48 1.7 1
(CD204489) HS1_8_B06.b1_A012 Heat-shocked seedlings Sorghum ... 48 1.7 1
(BM609491) 17000687102146 A.Gam.ad.cDNA.blood1 Anopheles gam... 48 1.7 1
(BM586532) 17000687317957 A.Gam.ad.cDNA.blood1 Anopheles gam... 48 1.7 1
(FE764202) CCAG1925.b7 CCAG Petrolisthes cinctipes heart, gi... 48 1.7 1
(AE017308) Mycoplasma mobile 163K complete genome. 48 1.7 1
(AF088979) Dictyostelium discoideum beige protein homolog (l... 36 1.7 4
(EH298100) UAHYP_06A_F_B10 UaHyphae_ARS Uromyces appendicula... 30 2.4 4
(FE683856) Pv006D_M13F_D06.ab1 Phaseolus vulgaris cv Early g... 30 2.7 4
(EL409539) CFFS7176.b1_O18.ab1 CFF(LMS) safflower Carthamus ... 42 3.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 3.0 2
(G22225) human STS WI-30473, sequence tagged site. 36 3.1 3
(F02849) H. sapiens partial cDNA sequence; clone c-1dc01. 36 3.1 3
(AC112104) Rattus norvegicus clone CH230-298F6, *** SEQUENCI... 36 3.1 2
(AC133445) Rattus norvegicus clone CH230-215I12, *** SEQUENC... 36 3.2 2
(CF438072) EST674417 normalized cDNA library of onion Allium... 46 3.3 2
(EH782608) CNSS21450.b1_D12.ab1 CNS(LMS) yellow starthistle ... 42 3.3 2
(CB818775) EST 1665 Green Apricot Fruit Lambda Zap II Librar... 38 3.3 3
(EH783791) CNSS23025.b1_B22.ab1 CNS(LMS) yellow starthistle ... 42 3.5 2
(AY254473) Dictyostelium discoideum nucleotide exchange fact... 34 3.5 4
(EL402416) CFFS13574.b1_L09.ab1 CFF(LMS) safflower Carthamus... 42 3.5 2
(EH790923) CNSS636.b2_G16.ab1 CNS(LMS) yellow starthistle Ce... 42 3.5 2
(CR936462) Zebrafish DNA sequence from clone DKEY-259H22 in ... 32 3.5 2
(EH789047) CNSS29089.b1_B02.ab1 CNS(LMS) yellow starthistle ... 42 3.5 2
(EV370256) EST_cclu_evb_705540 ccluevb mixed_tissue Coregonu... 36 3.6 2
(EH782934) CNSS21778.b1_C22.ab1 CNS(LMS) yellow starthistle ... 42 3.6 2
(EH742780) CNMS2462.b1_L15.ab1 CNM(LMS) spotted knapweed Cen... 42 3.6 2
(EV162351) 0086213 Brassica napus Bud library Brassica napus... 44 3.6 2
(EV162268) 0086130 Brassica napus Bud library Brassica napus... 44 3.6 2
(EV162423) 0086285 Brassica napus Bud library Brassica napus... 44 3.6 2
(EH787725) CNSS27756.b1_H03.ab1 CNS(LMS) yellow starthistle ... 42 3.7 2
(EH787613) CNSS27642.b1_D24.ab1 CNS(LMS) yellow starthistle ... 42 3.8 2
(EY343663) CAWZ12630.fwd CAWZ Helobdella robusta Primary Lat... 36 3.9 3
(FL805716) CCGG5777.b1 CCGG Panicum virgatum late flowering ... 34 3.9 3
(AR279260) Sequence 3 from patent US 6514697. 36 3.9 2
(AR097041) Sequence 3 from patent US 6071518. 36 3.9 2
(AR279261) Sequence 4 from patent US 6514697. 36 3.9 2
(AR097042) Sequence 4 from patent US 6071518. 36 3.9 2
(EH787443) CNSS27470.b1_K04.ab1 CNS(LMS) yellow starthistle ... 42 3.9 2
(AJ314911) Dictyostelium discoideum DrnA gene for putative R... 36 4.0 2
(EH734328) CNMM742.b2_L18.ab1 CNM(LMS) spotted knapweed Cent... 42 4.1 2
(EY295376) CAWX12215.fwd CAWX Helobdella robusta Primary Ear... 36 4.3 2
(BJ001619) Oryzias latipes cDNA clone:MF01SSA025B05 : 5' end... 34 4.3 2
(EY364273) CAWZ9241.fwd CAWZ Helobdella robusta Primary Late... 36 4.3 2
(EK375633) 1095469438735 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.3 2
(AM140676) Oryzias latipes EST, clone McF0008P22-MGRbd1. 34 4.3 2
(BH442812) BOGKI16TF BOGK Brassica oleracea genomic clone BO... 36 4.3 2
(DK111685) Oryzias latipes cDNA, clone: oleb63g02, 5' end. 34 4.3 2
(EY295375) CAWX12215.rev CAWX Helobdella robusta Primary Ear... 36 4.3 2
(DK011186) Oryzias latipes cDNA, clone: olbr33c16, 5' end. 34 4.3 2
(DK105764) Oryzias latipes cDNA, clone: oleb46n08, 5' end. 34 4.3 2
(AM313652) Oryzias latipes EST, clone FOE002-P00048-DPE-F_M13. 34 4.3 2
(DK065968) Oryzias latipes cDNA, clone: olea62b10, 5' end. 34 4.3 2
(AM149849) Oryzias latipes EST, clone McF0024A21-MGRbd1. 34 4.3 2
(BJ542397) Oryzias latipes cDNA clone:MF01SSB038D16, 3' end ... 34 4.3 2
(AM152579) Oryzias latipes EST, clone McF0027A16-MGRbd1. 34 4.3 2
(DE266146) Oryzias latipes DNA, clone: ola1-156H20.F, genomi... 34 4.3 2
(DE282206) Oryzias latipes DNA, clone: ola1-240M10.R, genomi... 34 4.4 2
(DE088380) Oryzias latipes DNA, clone: ola1-193P01.F, genomi... 34 4.4 2
(DE274862) Oryzias latipes DNA, clone: ola1-221D20.F, genomi... 34 4.4 2
(DE094292) Oryzias latipes DNA, clone: ola1-213J22.F, genomi... 34 4.4 2
(DH183037) Oryzias latipes Fosmid clone:GOLWFno465_h06, reve... 34 4.4 2
(DH186330) Oryzias latipes Fosmid clone:GOLWFno464_g15, reve... 34 4.4 2
(DH348389) Oryzias latipes Fosmid clone:GOLWFno722_c05, forw... 34 4.4 2
(DH410712) Oryzias latipes Fosmid clone:GOLWFno816_i11, forw... 34 4.4 2
(DH407617) Oryzias latipes Fosmid clone:GOLWFno811_p23, reve... 34 4.4 2
(CA839451) MCT027F09_171997 Ice plant Lambda Uni-Zap XR expr... 34 4.4 2
(DH409340) Oryzias latipes Fosmid clone:GOLWFno814_h21, reve... 34 4.4 2
(DH396395) Oryzias latipes Fosmid clone:GOLWFno795_h11, reve... 34 4.4 2
(DH238559) Oryzias latipes Fosmid clone:GOLWFno510_h05, forw... 34 4.4 2
(AM152168) Oryzias latipes EST, clone McF0024A21-MGRbd2. 34 4.4 2
(DH154289) Oryzias latipes Fosmid clone:GOLWFno424_o01, forw... 34 4.4 2
(DH215447) Oryzias latipes Fosmid clone:GOLWFno541_e02, forw... 34 4.4 2
(DH103614) Oryzias latipes Fosmid clone:GOLWFno351_c19, reve... 34 4.4 2
(DH047516) Oryzias latipes Fosmid clone:GOLWFno45_i02, rever... 34 4.4 2
(AL741566) Danio rerio genomic clone DKEY-12I5, genomic surv... 32 4.4 2
(DH045593) Oryzias latipes Fosmid clone:GOLWFno11_k20, rever... 34 4.4 2
(AU240467) Oryzias latipes cDNA clone:OLc19.10g. 34 4.4 2
(DH385861) Oryzias latipes Fosmid clone:GOLWFno769_e24, forw... 34 4.4 2
(DH198297) Oryzias latipes Fosmid clone:GOLWFno488_i12, reve... 34 4.4 2
(DH179900) Oryzias latipes Fosmid clone:GOLWFno459_l11, reve... 34 4.4 2
(DH132728) Oryzias latipes Fosmid clone:GOLWFno340_n05, forw... 34 4.4 2
(DE077520) Oryzias latipes DNA, clone: ola1-181N21.R, genomi... 34 4.4 2
(DH376288) Oryzias latipes Fosmid clone:GOLWFno774_i12, reve... 34 4.4 2
(DH161810) Oryzias latipes Fosmid clone:GOLWFno436_g11, reve... 34 4.4 2
(DH318615) Oryzias latipes Fosmid clone:GOLWFno683_f14, forw... 34 4.4 2
(DH175186) Oryzias latipes Fosmid clone:GOLWFno452_i20, forw... 34 4.4 2
(DH086669) Oryzias latipes Fosmid clone:GOLWFno164_e03, reve... 34 4.5 2
(DH144514) Oryzias latipes Fosmid clone:GOLWFno409_k11, forw... 34 4.5 2
(DH058941) Oryzias latipes Fosmid clone:GOLWFno111_i20, reve... 34 4.5 2
(DH058204) Oryzias latipes Fosmid clone:GOLWFno110_d08, reve... 34 4.5 2
(DH281899) Oryzias latipes Fosmid clone:GOLWFno621_g20, forw... 34 4.5 2
(DH231438) Oryzias latipes Fosmid clone:GOLWFno564_p02, reve... 34 4.5 2
(DH266316) Oryzias latipes Fosmid clone:GOLWFno593_m12, forw... 34 4.5 2
(DH286501) Oryzias latipes Fosmid clone:GOLWFno628_i03, reve... 34 4.5 2
(DH186599) Oryzias latipes Fosmid clone:GOLWFno464_n11, forw... 34 4.5 2
(DH162753) Oryzias latipes Fosmid clone:GOLWFno437_n08, forw... 34 4.5 2
(DH116756) Oryzias latipes Fosmid clone:GOLWFno378_j17, forw... 34 4.5 2
(DH369462) Oryzias latipes Fosmid clone:GOLWFno754_f17, forw... 34 4.5 2
(DE118917) Oryzias latipes DNA, forward end of BAC clone: Md... 34 4.5 2
(DH261963) Oryzias latipes Fosmid clone:GOLWFno586_l01, reve... 34 4.5 2
(DE118234) Oryzias latipes DNA, reverse end of BAC clone: Md... 34 4.5 2
(DH269480) Oryzias latipes Fosmid clone:GOLWFno600_b17, forw... 34 4.5 2
(DH031756) Oryzias latipes Fosmid clone:GOLWFno60_a12, rever... 34 4.5 2
(DH228076) Oryzias latipes Fosmid clone:GOLWFno559_o19, reve... 34 4.6 2
(DH366686) Oryzias latipes Fosmid clone:GOLWFno750_a23, forw... 34 4.6 2
(AC074174) Mus musculus strain C57BL6/J chromosome 5 clone R... 36 4.6 8
(AM156409) Oryzias latipes EST, clone McF0036M16-MGRbd1. 34 4.6 2
(AY160096) Dictyostelium discoideum nucleotide exchange fact... 38 4.8 3
(AY871922) Synthetic construct hypothetical protein (FTT0723... 34 4.8 3
(AF525168) Kluyveromyces marxianus strain B4425 Ure2p (URE2)... 38 5.2 2
(FE761482) CAYF8229.g1 CAYF Petrolisthes cinctipes heart, wh... 36 5.3 3
(EJ123445) 1092343384095 Global-Ocean-Sampling_GS-27-01-01-1... 36 5.4 3
(DV742672) ID0AFF7DB03CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 38 5.6 2
(BJ442881) Dictyostelium discoideum cDNA clone:ddv51b07, 3' ... 34 6.6 3
(BX323598) Zebrafish DNA sequence from clone CH211-196M2 in ... 46 6.6 1
(BX005395) Zebrafish DNA sequence from clone DKEY-8L13 in li... 46 6.6 1
(AC145948) Gallus gallus BAC clone CH261-24O17 from chromoso... 46 6.6 1
(AC163494) Mus musculus chromosome 7, clone RP23-221O21, com... 46 6.6 1
(AC139576) Mus musculus BAC clone RP23-364L23 from chromosom... 46 6.6 1
(AC101818) Mus musculus chromosome 7, clone RP24-363I8, comp... 46 6.6 1
(D26058) Catharanthus roseus cyc07 gene, complete cds. 46 6.6 1
(AY123006) Arabidopsis thaliana putative transcription facto... 46 6.6 1
(AY096493) Arabidopsis thaliana putative transcription facto... 46 6.6 1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 46 6.6 1
(AM426694) Vitis vinifera contig VV78X216713.11, whole genom... 46 6.6 1
(DL131174) Bax-responsive genes for drug target identificati... 46 6.6 1
(AX537058) Sequence 659 from Patent WO02064766. 46 6.6 1
(AR941734) Sequence 659 from patent US 7101990. 46 6.6 1
(AR557783) Sequence 12914 from patent US 6747137. 46 6.6 1
(AP002428) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 6.6 1
(AC152743) Bos taurus clone CH240-3O17, WORKING DRAFT SEQUEN... 46 6.6 1
(AC152644) Bos taurus clone CH240-16G1, WORKING DRAFT SEQUEN... 46 6.6 1
(AC095673) Rattus norvegicus clone CH230-8J13, *** SEQUENCIN... 46 6.6 1
(CU076104) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 6.6 1
(CU041315) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.6 1
(AP004244) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 6.6 1
(AC212590) Pongo abelii chromosome UNKNOWN clone CH276-109M9... 46 6.6 1
(AC183264) Bos taurus clone CH240-98E20, WORKING DRAFT SEQUE... 46 6.6 1
(AC180523) Strongylocentrotus purpuratus clone R3-3099D12, W... 46 6.6 1
(AC023944) Homo sapiens chromosome 11 clone RP11-561H11 map ... 46 6.6 1
(AY815632) Schistosoma japonicum SJCHGC08631 protein mRNA, c... 46 6.6 1
(AZ845426) 2M0145A17F Mouse 10kb plasmid UUGC1M library Mus ... 46 6.6 1
(FH008484) CHO_OF394xm17f2.ab1 CHO_OF Nicotiana tabacum geno... 46 6.6 1
(ER532148) 1093015776262 Global-Ocean-Sampling_GS-35-01-01-1... 46 6.6 1
(ER397572) 1095349001035 Global-Ocean-Sampling_GS-34-01-01-1... 46 6.6 1
(EJ482667) 1095403479602 Global-Ocean-Sampling_GS-28-01-01-1... 46 6.6 1
(EJ230599) 1092402589819 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.6 1
(ED911186) OA_CBa0088D05.f OA_CBa Oryza australiensis genomi... 46 6.6 1
(DE222364) Trifolium pratense DNA, clone:RCG13819. 46 6.6 1
(CT439529) Sus scrofa genomic clone CH242-65A9, genomic surv... 46 6.6 1
(CC954398) BOIBU25TF BO_1.4_1.6_KB_nuc Brassica oleracea gen... 46 6.6 1
(ES225416) MpSG_ag3_A22 Myzus persicae, tobacco lineage, aph... 46 6.6 1
(DW650459) CLJ386-N06.x1d-t SHGC-CLJ2 Gasterosteus aculeatus... 46 6.6 1
(DR556969) WS0058.B21_B23 WS-PP-A-6 Picea glauca cDNA clone ... 46 6.6 1
(CV742643) SJAL_040_79.T3 SJL Schistosoma japonicum cDNA, mR... 46 6.6 1
(CF543689) S014668-024-029-N04-SP6 MPIZ-ADIS-024-leaf Beta v... 46 6.6 1
(FK715052) pl_003-G12 Ilyanassa (snail) 0-48h Ilyanassa obso... 46 6.6 1
(FC843344) CBHN2502.fwd CBHN Metridium senile tentacle Metri... 46 6.6 1
(FC842551) CBHN2065.fwd CBHN Metridium senile tentacle Metri... 46 6.6 1
(EX377219) GQ03234.B7_A22 GQ032 - Shoot tip (Normalized libr... 46 6.6 1
(ES778030) gmnbhkic_0009b01.pDNRm13r Gadus morhua head kidne... 46 6.6 1
(AE017126) Prochlorococcus marinus subsp. marinus str. CCMP1... 46 6.6 1
(DV741805) ID0AFF5BC09CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 38 6.6 2
(CT917587) Phaeodactylum tricornutum 3-PRIME EST from clone ... 38 6.9 2
(AC217791) Canis familiaris, clone XX-160M23, complete seque... 36 7.0 11
(CB763333) AMGNNUC:NRPI4-00019-D1-A W Rat pituitary (10472) ... 44 7.2 2
(CN750768) ApDT-XXVI-A3 ApDT Acyrthosiphon pisum cDNA clone ... 38 7.3 2
(CT574546) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.3 7
(AY188980) Penaeus monodon clone t706 microsatellite sequence. 38 7.5 3
(AY188973) Penaeus monodon clone t607 microsatellite sequence. 38 7.5 3
(BJ347606) Dictyostelium discoideum cDNA clone:dda27h17, 3' ... 38 7.6 2
(EX612882) 255381902 Pea aphid whole body normalized full le... 38 7.8 2
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 32 7.8 2
(BJ345254) Dictyostelium discoideum cDNA clone:dda23j05, 3' ... 38 7.9 2
(AY753013) Penaeus monodon clone t1903 microsatellite sequence. 38 7.9 3
(BQ623172) USDA-FP_00263 Ridge pineapple sweet orange entire... 44 8.2 2
(BJ345324) Dictyostelium discoideum cDNA clone:dda23h10, 3' ... 38 8.2 2
(BJ344278) Dictyostelium discoideum cDNA clone:dda18a06, 3' ... 38 8.5 2
(BJ402927) Dictyostelium discoideum cDNA clone:dds18p15, 3' ... 38 8.6 2
(BJ400183) Dictyostelium discoideum cDNA clone:dds9k03, 3' e... 38 8.7 2
(BJ400693) Dictyostelium discoideum cDNA clone:dds14i08, 3' ... 38 9.0 2
(AU052269) Dictyostelium discoideum slug cDNA, clone SLA475. 38 9.0 2
(CR318605) Zebrafish DNA sequence from clone DKEY-109C12 in ... 38 9.2 4
(FF319793) 280405096 Pea aphid whole body normalized full le... 38 9.2 2
(CR382128) Yarrowia lipolytica strain CLIB122 chromosome B c... 32 9.5 2
(BJ331065) Dictyostelium discoideum cDNA clone:dda33c20, 5' ... 40 9.9 2
(BJ333835) Dictyostelium discoideum cDNA clone:dda44o03, 5' ... 40 9.9 2
>(BJ381044) Dictyostelium discoideum cDNA clone:ddc40l05, 3' end,
single read.
Length = 658
Score = 1118 bits (564), Expect = 0.0
Identities = 591/604 (97%)
Strand = Plus / Minus
Query: 1856 atgatctttacttttcaaatggtacggtttgtatggaagagtcatcggaatatccatact 1915
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 658 atgatctttacttttcaaatggtacggtttgtanggaagagtcatcggaatatccatact 599
Query: 1916 atcaacttggtcaattattaaatggtgcttccgatcagtataacactggtaatgtaaatt 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atcaacttggtcaattattaaatggtgcttccgatcagtataacactggtaatgtaaatt 539
Query: 1976 tcaaatccgttagtaaactttttagaggttttccaactatcgagtatcaattatacaata 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcaaatccgttagtaaactttttagaggttttccaactatcgagtatcaattatacaata 479
Query: 2036 attacaaagcaatcatctcaatgatgaatggtacaatcgatacatctcaatatgatcttt 2095
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 attacaaagcnatcatctcaatgatgaatggtacaatcgatacatctcaatatgatcttt 419
Query: 2096 tgagattgaatttcttcttccttcatgatcaatcttataataatccaaatccaagtattg 2155
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgagattgaatttcttcttcnttcatgatcaatcttataataatccaaatccaagtattg 359
Query: 2156 actctagtgaaggttgcaaactctttctttttagatcttcaaatttgtattaccgttcaa 2215
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 antntagtgaaggttgcaaantctttctttttagatcttcaaatttgtattaccgttcaa 299
Query: 2216 gtggttggtaatttaccttgtgttggtttatcaccatacttgggtggtcaagttccaaat 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtggttggtaatttaccttgtgttggtttatcaccatacttgggtggtcaagttccaaat 239
Query: 2276 gcagtatgggttgaacttttaattcctttctctgatcttcaagtttatccaaatgctctt 2335
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 238 gcagtatgggttgaacttttaattcctttntctgatcttcaagtttatccaaatgntctt 179
Query: 2336 atcagtagtatcactttccaaactcaagtacaagatcaccaaggtgttttctttattggt 2395
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 178 atcagtagtatcactttccaaantcaagtacaagatcaccaaggtgttttctttantggt 119
Query: 2396 gatatttctgctggtaattttgtaccaccatataaagtactagaggatggttcaaacgct 2455
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 118 gatatttctgctggtaattttgtaccnccatataaagtactagaggagggttcnaacgct 59
Query: 2456 ttca 2459
||||
Sbjct: 58 ttca 55
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,500,467,085
Number of extensions: 154516703
Number of successful extensions: 14692857
Number of sequences better than 10.0: 382
Length of query: 2586
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2561
Effective length of database: 96,311,147,814
Effective search space: 246652849551654
Effective search space used: 246652849551654
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7.27 |
| Homology vs Protein |
Query= Contig-U16333-1 (Contig-U16333-1Q) /CSM_Contig/Contig-U16333-1Q.Seq.d
(2586 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF546871_1(AF546871|pid:none) Bacillus licheniformis beta-1-3,1-... 55 1e-05
EU368224_1(EU368224|pid:none) Bacillus amyloliquefaciens strain ... 55 2e-05
CP000560_3500(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 55 2e-05
DQ251731_1(DQ251731|pid:none) Synthetic construct beta-1,3-1,4-g... 55 2e-05
DQ100311_1(DQ100311|pid:none) Synthetic construct glucanase-xyla... 54 2e-05
AY205562_1(AY205562|pid:none) Bacillus amyloliquefaciens beta-1,... 54 2e-05
EU181172_1(EU181172|pid:none) Synthetic construct beta-glucanase... 54 2e-05
DQ100308_1(DQ100308|pid:none) Synthetic construct glucanase-xyla... 54 2e-05
EU623974_1(EU623974|pid:none) Bacillus amyloliquefaciens strain ... 54 2e-05
DQ100309_1(DQ100309|pid:none) Synthetic construct glucanase-xyla... 54 2e-05
EU328344_1(EU328344|pid:none) Paenibacillus polymyxa CP7 beta-1,... 54 2e-05
EU568113_1(EU568113|pid:none) Synthetic construct beta-glucanase... 54 2e-05
DQ100312_1(DQ100312|pid:none) Synthetic construct glucanase-xyla... 54 2e-05
EU365623_1(EU365623|pid:none) Synthetic construct beta-glucanase... 54 2e-05
EU181173_1(EU181173|pid:none) Synthetic construct beta-glucanase... 54 2e-05
EU568112_1(EU568112|pid:none) Synthetic construct beta-glucanase... 54 2e-05
BA000004_3231(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 54 3e-05
Z25880_1(Z25880|pid:none) Synthetic B.macerans/B.amyloliquefacie... 54 4e-05
NRL(1AYH) Hybrid (1,3-1,4)-beta-d-glucan 4-glucanohydrolase h (a... 53 5e-05
Z25878_1(Z25878|pid:none) Synthetic B.macerans/B.amyloliquefacie... 53 5e-05
AY160109_1(AY160109|pid:none) Bacillus licheniformis beta-1,3-1,... 53 6e-05
EU410619_2(EU410619|pid:none) Paenibacillus polymyxa strain SC2 ... 52 8e-05
AY164457_1(AY164457|pid:none) Paenibacillus polymyxa beta-1,3-1,... 52 8e-05
AF284449_1(AF284449|pid:none) Paenibacillus polymyxa endo-1,3-1,... 52 8e-05
EF488175_1(EF488175|pid:none) Paenibacillus polymyxa strain SC2 ... 52 8e-05
(P07980) RecName: Full=Beta-glucanase; EC=3.2.1.73; Alt... 52 1e-04
Z25877_1(Z25877|pid:none) Synthetic B.macerans/B.amyloliquefacie... 51 2e-04
(P04957) RecName: Full=Beta-glucanase; EC=3.2.1.73; Alt... 51 2e-04
CS115724_1(CS115724|pid:none) Sequence 7 from Patent WO2005056744. 51 2e-04
FJ800365_1(FJ800365|pid:none) Bacillus subtilis strain LN cellul... 51 2e-04
CS115734_1(CS115734|pid:none) Sequence 17 from Patent WO20050567... 51 2e-04
AY365256_1(AY365256|pid:none) Bacillus licheniformis beta-1,3-1,... 51 2e-04
AF490978_1(AF490978|pid:none) Bacillus subtilis beta-1,3-1,4-glu... 50 4e-04
AY221029_1(AY221029|pid:none) Paenibacillus macerans beta-1,3-1,... 49 7e-04
NRL(1MACA) 1,3-1,4-beta-d-glucan 4-glucanohydrolase (EC 3.2.1.73... 49 7e-04
Z25881_1(Z25881|pid:none) Synthetic B.macerans/B.amyloliquefacie... 49 7e-04
Z25883_1(Z25883|pid:none) Synthetic B.macerans/B.amyloliquefacie... 49 7e-04
Z25873_1(Z25873|pid:none) Synthetic B.macerans/B.amyloliquefacie... 49 7e-04
(P23904) RecName: Full=Beta-glucanase; EC=3.2.1.73; Alt... 49 7e-04
Z25876_1(Z25876|pid:none) Synthetic B.macerans/B.amyloliquefacie... 49 0.001
Z25882_1(Z25882|pid:none) Synthetic B.macerans/B.amyloliquefacie... 49 0.001
AY536531_1(AY536531|pid:none) Synthetic construct endo-1,3-1,4-b... 49 0.001
AY383603_1(AY383603|pid:none) Bacillus licheniformis KCCM41412 l... 48 0.002
CP000813_458(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 48 0.002
AY772705_1(AY772705|pid:none) Paenibacillus polymyxa beta-1,3-1,... 48 0.002
U60830_1(U60830|pid:none) Bacillus subtilis endo-beta-1,3-1,4-gl... 48 0.002
(P27051) RecName: Full=Beta-glucanase; EC=3.2.1.73; Alt... 47 0.003
AY225317_1(AY225317|pid:none) Bacillus licheniformis endo-beta-1... 47 0.003
A00896_1(A00896|pid:none) Bacillus sp. sequence for 1,3-1,4-beta... 47 0.003
BA000004_3232(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 46 0.006
A48378(A48378)licheninase (EC 3.2.1.73) - Bacillus brevis 45 0.013
AY536533_1(AY536533|pid:none) Synthetic construct endo-1,3-1,4-b... 45 0.013
AY164456_1(AY164456|pid:none) Bacillus pumilus beta-1,3-1,4-gluc... 44 0.023
AY316746_10(AY316746|pid:none) Rhizobium sp. NGR234 megaplasmid ... 44 0.039
CP000874_1807(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 44 0.039
CP000158_2558(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 42 0.087
CP001001_4539(CP001001|pid:none) Methylobacterium radiotolerans ... 42 0.15
CP000634_760(CP000634|pid:none) Agrobacterium vitis S4 chromosom... 41 0.19
CP000739_1347(CP000739|pid:none) Sinorhizobium medicae WSM419 pl... 41 0.19
CP000099_1867(CP000099|pid:none) Methanosarcina barkeri str. Fus... 41 0.19
AY536529_1(AY536529|pid:none) Synthetic construct endo-1,3-1,4-b... 40 0.43
CP000390_643(CP000390|pid:none) Mesorhizobium sp. BNC1, complete... 40 0.43
PDBN(1AXK)A MOL_ID: 1;MOL_ID: 1; MOLECULE: GLUXYN-1; MOLECULE: G... 40 0.56
NRL(1CPM) Circularly permuted (1-3,1-4)-beta-d-glucan 40 0.56
NRL(1CPN) Circularly permuted (1-3,1-4)-beta-d-glucan 40 0.56
(Q53317) RecName: Full=Xylanase/beta-glucanase; Includes: RecN... 39 0.74
AF529296_1(AF529296|pid:none) Anaeromyces sp. W-98 lichenase (li... 39 0.96
AF332095_1(AF332095|pid:none) Bacillus cereus beta-1,3-1,4-beta-... 38 1.6
CP000302_3659(CP000302|pid:none) Shewanella denitrificans OS217,... 38 2.1
CP000102_735(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 37 2.8
EU494951_1(EU494951|pid:none) Actinidia deliciosa xyloglucan end... 37 3.7
(Q9XIW1) RecName: Full=Probable xyloglucan endotransglucosylase/... 37 4.8
CP000260_267(CP000260|pid:none) Streptococcus pyogenes MGAS10270... 36 6.2
CP000282_182(CP000282|pid:none) Saccharophagus degradans 2-40, c... 36 6.2
AE004092_232(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 36 8.1
AP010935_328(AP010935|pid:none) Streptococcus dysgalactiae subsp... 36 8.1
AE009949_235(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 36 8.1
CP000262_265(CP000262|pid:none) Streptococcus pyogenes MGAS10750... 36 8.1
AM295007_1562(AM295007|pid:none) Streptococcus pyogenes Manfredo... 36 8.1
>AF546871_1(AF546871|pid:none) Bacillus licheniformis
beta-1-3,1-4-endoglucanase (eg1314) gene, complete cds.
Length = 214
Score = 55.5 bits (132), Expect = 1e-05
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Frame = +2
Query: 662 DVFDSMSNSGNFQESVSSSSNDPYDCYLQSSNVKFTKSGTGTTNVARLILDSAGCPTSCL 841
D F+S NSG +Q++ S+ D ++C +++NV T SG RL L TS
Sbjct: 9 DPFNSY-NSGLWQKANGYSNGDMFNCTWRANNVSMTSSGE-----MRLAL------TSPS 56
Query: 842 THSYSCAEIQAQSSLNYGTYTFIAKVSPIKNVITKLYASTG--GNSQYSDIYFQIFG-NT 1012
+ + C E ++ + YG Y K + +++ + TG + + +I + G +T
Sbjct: 57 YNKFDCGENRSVQTYGYGLYEVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDT 116
Query: 1013 TRVNYGYTYFGQKVNYYK--DLTGVVISSTNTYSFDFSKTQLSFYFNGIL 1156
T+V + Y Y N+ K DL ++ +TY+FD+ + +Y +G L
Sbjct: 117 TKVQFNY-YTNGAGNHEKVADLGFDAANAYHTYAFDWQPNSIKWYVDGQL 165
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 3,334,861,953
Number of extensions: 65453540
Number of successful extensions: 164013
Number of sequences better than 10.0: 79
Number of HSP's gapped: 163789
Number of HSP's successfully gapped: 81
Length of query: 862
Length of database: 1,061,185,681
Length adjustment: 138
Effective length of query: 724
Effective length of database: 610,139,857
Effective search space: 441741256468
Effective search space used: 441741256468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
15 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
5 |
| SH (FL, L) |
3 |
| SF (FL, S) |
2 |
| CH (FL, L) |
34 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |