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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U16318-1
Contig ID Contig-U16318-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U16318-1 (Contig-U16318-1Q) /CSM_Contig/Contig-U16318-1Q.Seq.d
TTGGCTCTACTGGTTATAATAATAAAAATCAAGATATAAAAATAGTAAAA
AATGATGAAAAAAAATAAACCAACAGTAGCACAAACTTTATCACCAGAAG
AAGAACAAGCAAAATTCTTTGAAGAAGCTAAAAACAATGTTATGATTCAA
GGTCATCACATGAAATTATCTTTGGATAACTCAAAATTAATGGATGCACT
CAAGTATGCCTCAAACATTATCAATGAACTCCGTACAAGTTTACTTTCAC
CAAAATCATATTATGCTCTCTATTTAGTTGCTTTTGATTATCTTCAATAC
TTGAATACTTATCTCTATGAAGAGAAACATGGTAAGAAAATGATTGAACT
TTATGAAGTTGTACAACATGCTGGTAATGTTTTACCAAGATTATATTTAT
TAATTACAGTTGGATCAGTTTATATTAAAACTAAACAAGCACCAGCAAAA
GATGTATTAAAAGATTTAATTGAAATGTGTAGAGGTGTTCAACATCCAAC
AAGAGGTTTATTTTTAAGACATTATCTTAGTGAAGTTACCAAAGATAAAT
TACCAGATATTGATTCATCCGTTGAGAATGGTACAGTTATGGATTCAATT
GATTTCATCATTCAAAATTTCACAGAGACTAATAAACTTTGGGTACGTAT
GCAACATCAAGCTCCAACCAAAGATAGAGAGAGAAGAGAGAATGAACGTT
TAGAGTTAAGATTATTGGTCGGTAAGAATTTATCACGTTTAGCACAACTC
GATGGTGTTGATCAAAAAACATATAGTGAAGTGGTTTTACCAAAGGTCGT
AGAACAAATCATCAATTGTAAGGATAAAATCGCTCAACAATATTTAATGG
AAATCTTAATTCAAGTATTCCCAGATGAATTTCATTTGGCTACACTCGAT
ATTATTCTTCAAACTTGTGCTCAACTTCAATCTGGTGTTGATGTTAAAAC
TATCATTGCTTCACTCATTGATAGACTTGCTAACTTTGCAACTCGTAATG
CTGATCTTGTTCCAGATAATATTAAAATTTTCGATATCTTTTTCAATAA-
---------GTATTAGACATACTTTGGTTCCATTGGTATTCTGTTCTCTT
CGTTTCATTCGTAACTTTAAACAACAAGTCGATAGTGGTGTCATCAGTTT
GGATGAAAATAAATGGATTGCAATTGGTTCAAAGATTTTCACCTTTGTCA
GTGAAACCATCAAAGCTTTGGCCCGATATCAAATTGGCCGATCTTAGCTT
TAGATTATACCTTCAAGCACTCCAAACCTTTGACCACTGTGGTTTGGTCT
CTCGTGTCAAAGAATTGGCCATCAAGGCTCTCTTAATCTTCCAAGAAGAT
ATCGCCGATTTCAAAGCTCAAGTTATGGCCCTTCAATTGTTAATCTCTAC
TCTCAATAGTTTAAGCATTCCAAATGAAGAGATCTATGAATCCTTGGCCG
CCCAAACCATTAAACAAGCTTCTCGTCTTCTCTTACCACAAGATCAAGCA
AAACTCATCTCTACTTGTTCACATTTATTCTGGGTTGATAATCCTTCTCG
TCAATATCAAAATCCAGACTCTGTATTACAAGCTCTCAAAAAAGCTCTCT
CCATTATCAGTAATGAATCGAGTCCTGGTCTTGGTACATCTTGTTGACAT
TTTGAATGAATGTCTCTTCTATTGTGATAAAGAAAGCTGATGCTGTTCCA
ATTCAATTCGTTTCAGATTAGGTTGAATGTAATTCGTACTACTCATGTTA
AAGAAGCTGATCCAGCATTACCATATTTACAAAATACTATCAAATACATT
CAATACTCAAAATTATAAAGGTATTTCAATTTAAACT
Gap gap included
Contig length 1827
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2662795
End point 2664609
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 11
Link to clone list U16318
List of clone(s) 

est1=AHP447F,1,252
est2=CHM831F,36,665
est3=AFI247F,51,630
est4=VHI583F,126,706
est5=VHG593F,349,974
est6=SFK379F,418,1049
est7=VHI583Z,1050,1827
est8=CHM831Z,1130,1808
est9=AFI247Z,1145,1791
est10=AHP447Z,1234,1822
est11=VHG593Z,1240,1793
Translated Amino Acid sequence 
lallviiikiki*k**KMMKKNKPTVAQTLSPEEEQAKFFEEAKNNVMIQGHHMKLSLDN
SKLMDALKYASNIINELRTSLLSPKSYYALYLVAFDYLQYLNTYLYEEKHGKKMIELYEV
VQHAGNVLPRLYLLITVGSVYIKTKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVT
KDKLPDIDSSVENGTVMDSIDFIIQNFTETNKLWVRMQHQAPTKDRERRENERLELRLLV
GKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLD
IILQTCAQLQSGVDVKTIIASLIDRLANFATRNADLVPDNIKIFDIFFN---

---VLDILWFHWYSVLFVSFVTLNNKSIVVSSVWMKINGLQLVQRFSPLSVKPSKLWPDI
KLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNS
LSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALK
KALSIISNESSPGLGTSC*hfe*mslll**rklmlfqfnsfqirlnvirtthvkeadpal
pylqntikyiqyskl*ryfnln
Translated Amino Acid sequence (All Frames) 
Frame A:
lallviiikiki*k**KMMKKNKPTVAQTLSPEEEQAKFFEEAKNNVMIQGHHMKLSLDN
SKLMDALKYASNIINELRTSLLSPKSYYALYLVAFDYLQYLNTYLYEEKHGKKMIELYEV
VQHAGNVLPRLYLLITVGSVYIKTKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVT
KDKLPDIDSSVENGTVMDSIDFIIQNFTETNKLWVRMQHQAPTKDRERRENERLELRLLV
GKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLD
IILQTCAQLQSGVDVKTIIASLIDRLANFATRNADLVPDNIKIFDIFFN---

---VLDILWFHWYSVLFVSFVTLNNKSIVVSSVWMKINGLQLVQRFSPLSVKPSKLWPDI
KLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLLISTLNS
LSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDSVLQALK
KALSIISNESSPGLGTSC*hfe*mslll**rklmlfqfnsfqirlnvirtthvkeadpal
pylqntikyiqyskl*ryfnln

Frame B:
wlywl***ksryknskk**kkinqq*hklyhqkknkqnslkklktml*fkvit*nylwit
qn*wmhssmpqtlsmnsvqvyfhqnhimlsi*llliifnt*ilismkrnmvrk*lnfmkl
ynmlvmfyqdyiy*lqldqfilklnkhqqkmy*ki*lkcvevfniqqevyf*diilvklp
kinyqilihplrmvqlwiqlissfkisqrlinfgyvcniklqpkiereermnv*s*dyws
vriyhv*hnsmvlikkhivkwfyqrs*nkssivrikslnni*wks*fkysqmnfiwlhsi
lffklvlnfnlvlmlklsllhslidlltlqlvmlilfqiilkfsisfsi---

---y*tyfgsigilfssfhs*l*ttsr*wchqfg*k*mdcnwfkdfhlcq*nhqsfgpis
nwpilaldytfkhskplttvvwslvsknwpsrls*sskkispisklklwpfnc*sllsiv
*afqmkrsmnpwppkplnkllvfsyhkikqnssllvhiysgliillvnikiqtlyyklsk
klsplsvmnrvlvlvhlvdilneclfycdkes*ccsnsirfrlg*m*fvllmlkkliqhy
hiykilsntfntqnykgisi*t

Frame C:
gstgynnknqdikivkndekk*tnsstnfitrrrtskil*rs*kqcydsrssheiifg*l
kingctqvclkhyq*tpykftftkiilcslfscf*lssileylsl*retw*end*tl*sc
ttcw*cftkiifinyswisly*n*tstskrcikrfn*nv*rcstsnkrfifktls**syq
r*itry*fir*ewysygfn*fhhskfhrd**tlgtyatsssnqr*rekre*tfrvkiigr
*efitfsttrwc*skni**sgftkgrrtnhql*g*nrstifngnlnssipr*isfgytry
yssnlcstsiwc*c*nyhcfth**tc*lcns*c*scsr*y*nfrylfq*---

---irhtlvplvfcslrfirnfkqqvdsgvisldenkwiaigskiftfvsetikalaryq
igrs*l*iipsstpnl*plwfglscqrighqgslnlprryrrfqsssygpsivnlysq*f
khsk*rdl*ilgrpnh*tsfssslttrsskthlylftfilg**sfssisksrlcitssqk
sslhyq**ieswswyilltf*mnvssivikkadavpiqfvsd*vecnsyysc*rs*ssit
iftkyyqihsilkiikvfqfk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U16318-1 (Contig-U16318-1Q)
/CSM_Contig/Contig-U16318-1Q.Seq.d
         (1837 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U16318-1 (Contig-U16318-1Q) /CSM_Contig/Conti...  2212  0.0
Contig-U16319-1 (Contig-U16319-1Q) /CSM_Contig/Conti...  1542  0.0
Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Conti...   551  e-156
Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11982-1 (Contig-U11982-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U15017-1 (Contig-U15017-1Q) /CSM_Contig/Conti...    38  0.047
Contig-U04326-1 (Contig-U04326-1Q) /CSM_Contig/Conti...    38  0.047
Contig-U15732-1 (Contig-U15732-1Q) /CSM_Contig/Conti...    36  0.19
Contig-U15705-1 (Contig-U15705-1Q) /CSM_Contig/Conti...    36  0.19
Contig-U15415-1 (Contig-U15415-1Q) /CSM_Contig/Conti...    36  0.19

>Contig-U16318-1 (Contig-U16318-1Q) /CSM_Contig/Contig-U16318-1Q.Seq.d
          Length = 1837

 Score = 2212 bits (1116), Expect = 0.0
 Identities = 1146/1146 (100%)
 Strand = Plus / Plus

                                                                        
Query: 692  atgaacgtttagagttaagattattggtcggtaagaatttatcacgtttagcacaactcg 751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  atgaacgtttagagttaagattattggtcggtaagaatttatcacgtttagcacaactcg 751

                                                                        
Query: 752  atggtgttgatcaaaaaacatatagtgaagtggttttaccaaaggtcgtagaacaaatca 811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  atggtgttgatcaaaaaacatatagtgaagtggttttaccaaaggtcgtagaacaaatca 811

                                                                        
Query: 812  tcaattgtaaggataaaatcgctcaacaatatttaatggaaatcttaattcaagtattcc 871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  tcaattgtaaggataaaatcgctcaacaatatttaatggaaatcttaattcaagtattcc 871

                                                                        
Query: 872  cagatgaatttcatttggctacactcgatattattcttcaaacttgtgctcaacttcaat 931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  cagatgaatttcatttggctacactcgatattattcttcaaacttgtgctcaacttcaat 931

                                                                        
Query: 932  ctggtgttgatgttaaaactatcattgcttcactcattgatagacttgctaactttgcaa 991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ctggtgttgatgttaaaactatcattgcttcactcattgatagacttgctaactttgcaa 991

                                                                        
Query: 992  ctcgtaatgctgatcttgttccagataatattaaaattttcgatatctttttcaataann 1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  ctcgtaatgctgatcttgttccagataatattaaaattttcgatatctttttcaataann 1051

                                                                        
Query: 1052 nnnnnnnngtattagacatactttggttccattggtattctgttctcttcgtttcattcg 1111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 nnnnnnnngtattagacatactttggttccattggtattctgttctcttcgtttcattcg 1111

                                                                        
Query: 1112 taactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaaataaatggattgc 1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 taactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaaataaatggattgc 1171

                                                                        
Query: 1172 aattggttcaaagattttcacctttgtcagtgaaaccatcaaagctttggcccgatatca 1231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 aattggttcaaagattttcacctttgtcagtgaaaccatcaaagctttggcccgatatca 1231

                                                                        
Query: 1232 aattggccgatcttagctttagattataccttcaagcactccaaacctttgaccactgtg 1291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 aattggccgatcttagctttagattataccttcaagcactccaaacctttgaccactgtg 1291

                                                                        
Query: 1292 gtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatcttccaagaagata 1351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 gtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatcttccaagaagata 1351

                                                                        
Query: 1352 tcgccgatttcaaagctcaagttatggcccttcaattgttaatctctactctcaatagtt 1411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 tcgccgatttcaaagctcaagttatggcccttcaattgttaatctctactctcaatagtt 1411

                                                                        
Query: 1412 taagcattccaaatgaagagatctatgaatccttggccgcccaaaccattaaacaagctt 1471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 taagcattccaaatgaagagatctatgaatccttggccgcccaaaccattaaacaagctt 1471

                                                                        
Query: 1472 ctcgtcttctcttaccacaagatcaagcaaaactcatctctacttgttcacatttattct 1531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 ctcgtcttctcttaccacaagatcaagcaaaactcatctctacttgttcacatttattct 1531

                                                                        
Query: 1532 gggttgataatccttctcgtcaatatcaaaatccagactctgtattacaagctctcaaaa 1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 gggttgataatccttctcgtcaatatcaaaatccagactctgtattacaagctctcaaaa 1591

                                                                        
Query: 1592 aagctctctccattatcagtaatgaatcgagtcctggtcttggtacatcttgttgacatt 1651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 aagctctctccattatcagtaatgaatcgagtcctggtcttggtacatcttgttgacatt 1651

                                                                        
Query: 1652 ttgaatgaatgtctcttctattgtgataaagaaagctgatgctgttccaattcaattcgt 1711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 ttgaatgaatgtctcttctattgtgataaagaaagctgatgctgttccaattcaattcgt 1711

                                                                        
Query: 1712 ttcagattaggttgaatgtaattcgtactactcatgttaaagaagctgatccagcattac 1771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 ttcagattaggttgaatgtaattcgtactactcatgttaaagaagctgatccagcattac 1771

                                                                        
Query: 1772 catatttacaaaatactatcaaatacattcaatactcaaaattataaaggtatttcaatt 1831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 catatttacaaaatactatcaaatacattcaatactcaaaattataaaggtatttcaatt 1831

                  
Query: 1832 taaact 1837
            ||||||
Sbjct: 1832 taaact 1837


 Score = 1201 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Plus

                                                                       
Query: 70  ccaacagtagcacaaactttatcaccagaagaagaacaagcaaaattctttgaagaagct 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  ccaacagtagcacaaactttatcaccagaagaagaacaagcaaaattctttgaagaagct 129

                                                                       
Query: 130 aaaaacaatgttatgattcaaggtcatcacatgaaattatctttggataactcaaaatta 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aaaaacaatgttatgattcaaggtcatcacatgaaattatctttggataactcaaaatta 189

                                                                       
Query: 190 atggatgcactcaagtatgcctcaaacattatcaatgaactccgtacaagtttactttca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atggatgcactcaagtatgcctcaaacattatcaatgaactccgtacaagtttactttca 249

                                                                       
Query: 250 ccaaaatcatattatgctctctatttagttgcttttgattatcttcaatacttgaatact 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccaaaatcatattatgctctctatttagttgcttttgattatcttcaatacttgaatact 309

                                                                       
Query: 310 tatctctatgaagagaaacatggtaagaaaatgattgaactttatgaagttgtacaacat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatctctatgaagagaaacatggtaagaaaatgattgaactttatgaagttgtacaacat 369

                                                                       
Query: 370 gctggtaatgttttaccaagattatatttattaattacagttggatcagtttatattaaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gctggtaatgttttaccaagattatatttattaattacagttggatcagtttatattaaa 429

                                                                       
Query: 430 actaaacaagcaccagcaaaagatgtattaaaagatttaattgaaatgtgtagaggtgtt 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 actaaacaagcaccagcaaaagatgtattaaaagatttaattgaaatgtgtagaggtgtt 489

                                                                       
Query: 490 caacatccaacaagaggtttatttttaagacattatcttagtgaagttaccaaagataaa 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caacatccaacaagaggtttatttttaagacattatcttagtgaagttaccaaagataaa 549

                                                                       
Query: 550 ttaccagatattgattcatccgttgagaatggtacagttatggattcaattgatttcatc 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaccagatattgattcatccgttgagaatggtacagttatggattcaattgatttcatc 609

                                                                       
Query: 610 attcaaaatttcacagagactaataaactttgggtacgtatgcaacatcaagctccaacc 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 attcaaaatttcacagagactaataaactttgggtacgtatgcaacatcaagctccaacc 669

                 
Query: 670 aaagat 675
           ||||||
Sbjct: 670 aaagat 675


>Contig-U16319-1 (Contig-U16319-1Q) /CSM_Contig/Contig-U16319-1Q.Seq.d
          Length = 1391

 Score = 1542 bits (778), Expect = 0.0
 Identities = 778/778 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1060 gtattagacatactttggttccattggtattctgttctcttcgtttcattcgtaacttta 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599  gtattagacatactttggttccattggtattctgttctcttcgtttcattcgtaacttta 658

                                                                        
Query: 1120 aacaacaagtcgatagtggtgtcatcagtttggatgaaaataaatggattgcaattggtt 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  aacaacaagtcgatagtggtgtcatcagtttggatgaaaataaatggattgcaattggtt 718

                                                                        
Query: 1180 caaagattttcacctttgtcagtgaaaccatcaaagctttggcccgatatcaaattggcc 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  caaagattttcacctttgtcagtgaaaccatcaaagctttggcccgatatcaaattggcc 778

                                                                        
Query: 1240 gatcttagctttagattataccttcaagcactccaaacctttgaccactgtggtttggtc 1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  gatcttagctttagattataccttcaagcactccaaacctttgaccactgtggtttggtc 838

                                                                        
Query: 1300 tctcgtgtcaaagaattggccatcaaggctctcttaatcttccaagaagatatcgccgat 1359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  tctcgtgtcaaagaattggccatcaaggctctcttaatcttccaagaagatatcgccgat 898

                                                                        
Query: 1360 ttcaaagctcaagttatggcccttcaattgttaatctctactctcaatagtttaagcatt 1419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  ttcaaagctcaagttatggcccttcaattgttaatctctactctcaatagtttaagcatt 958

                                                                        
Query: 1420 ccaaatgaagagatctatgaatccttggccgcccaaaccattaaacaagcttctcgtctt 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  ccaaatgaagagatctatgaatccttggccgcccaaaccattaaacaagcttctcgtctt 1018

                                                                        
Query: 1480 ctcttaccacaagatcaagcaaaactcatctctacttgttcacatttattctgggttgat 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctcttaccacaagatcaagcaaaactcatctctacttgttcacatttattctgggttgat 1078

                                                                        
Query: 1540 aatccttctcgtcaatatcaaaatccagactctgtattacaagctctcaaaaaagctctc 1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 aatccttctcgtcaatatcaaaatccagactctgtattacaagctctcaaaaaagctctc 1138

                                                                        
Query: 1600 tccattatcagtaatgaatcgagtcctggtcttggtacatcttgttgacattttgaatga 1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 tccattatcagtaatgaatcgagtcctggtcttggtacatcttgttgacattttgaatga 1198

                                                                        
Query: 1660 atgtctcttctattgtgataaagaaagctgatgctgttccaattcaattcgtttcagatt 1719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 atgtctcttctattgtgataaagaaagctgatgctgttccaattcaattcgtttcagatt 1258

                                                                        
Query: 1720 aggttgaatgtaattcgtactactcatgttaaagaagctgatccagcattaccatattta 1779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 aggttgaatgtaattcgtactactcatgttaaagaagctgatccagcattaccatattta 1318

                                                                      
Query: 1780 caaaatactatcaaatacattcaatactcaaaattataaaggtatttcaatttaaact 1837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 caaaatactatcaaatacattcaatactcaaaattataaaggtatttcaatttaaact 1376


 Score = 34.2 bits (17), Expect = 0.74
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1029 tttcgatatctttttca 1045
            |||||||||||||||||
Sbjct: 1    tttcgatatctttttca 17


>Contig-U14105-1 (Contig-U14105-1Q) /CSM_Contig/Contig-U14105-1Q.Seq.d
          Length = 665

 Score =  551 bits (278), Expect = e-156
 Identities = 313/322 (97%), Gaps = 3/322 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1499 caaaactcatctctacttgttcacatttattctgggttgataatccttctcgtcaatatc 1558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  caaaactcatctctacttgttcacatttattctgggttgataatccttctcgtcaatatc 406

                                                                        
Query: 1559 aaaatccagactctgtattacaagctctcaaaaaagctctctccattatcagtaatgaat 1618
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  aaaatccagactntgtattacaagctctcaaaaaagctctctccattatcagtaatgaat 466

                                                                        
Query: 1619 cgagtcctggtcttggtacatcttgttgacattttgaatgaatgtctcttctattgtgat 1678
            |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 467  cgagtcctggtcttggtacancntgttgacattttgaatgaatgtctcttctattgtgat 526

                                                                        
Query: 1679 aaagaaagctgatgctgttccaattcaattcgtttcagattaggttgaatgtaattcgta 1738
            ||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 527  aaanaaa-ctgatgctgttccaattcaattcgtttcagatttggttgaat-taattcgta 584

                                                                        
Query: 1739 ctactcatgttaaagaagctgatccagcattaccatatttacaaaatactatcaaataca 1798
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  ctactcatgttaaagaagctgatccagcattaccatatttacaaaatactatcaaataca 644

                                  
Query: 1799 ttcaatactcaaaattataaag 1820
            |||||| ||||||| |||||||
Sbjct: 645  ttcaat-ctcaaaactataaag 665


 Score =  545 bits (275), Expect = e-155
 Identities = 292/298 (97%), Gaps = 1/298 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1099 ttcgtttcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 1158
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11   ttcgtntcattcgtaactttaaacaacaagtcgatagtggtgtcatcagtttggatgaaa 70

                                                                        
Query: 1159 ataaatggattgcaattggttcaaagattttcacctttgtcagtgaaaccatcaaagctt 1218
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 71   ataaatggattgcaattggttcaaagattttcacctntgtcagtgaaaccatcaaagctt 130

                                                                        
Query: 1219 tggcccgatatcaaattggccgatcttagctttagattataccttcaagcactccaaacc 1278
            || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131  tgncc-gatatcnaattggccgatcttagctttagattataccttcaagcactccaaacc 189

                                                                        
Query: 1279 tttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatc 1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  tttgaccactgtggtttggtctctcgtgtcaaagaattggccatcaaggctctcttaatc 249

                                                                      
Query: 1339 ttccaagaagatatcgccgatttcaaagctcaagttatggcccttcaattgttaatct 1396
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 250  ttccaagaagatatcgccgatttcnaagctcaagttatggcccttcaattgttaatct 307


 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 594 ttcaattgatttcatcattcaaaatttca 622
           |||||||||||||||||||||||||||||
Sbjct: 313 ttcaattgatttcatcattcaaaatttca 341


 Score = 32.2 bits (16), Expect = 2.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 602 atttcatcattcaaaa 617
           ||||||||||||||||
Sbjct: 336 atttcatcattcaaaa 351


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,010
Number of Sequences: 8402
Number of extensions: 28010
Number of successful extensions: 2728
Number of sequences better than 10.0: 85
length of query: 1837
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1820
effective length of database: 7,932,708
effective search space: 14437528560
effective search space used: 14437528560
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 3.27
Homology vs DNA 
Query= Contig-U16318-1 (Contig-U16318-1Q) /CSM_Contig/Contig-U16318-1Q.Seq.d
         (1837 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ326650) Dictyostelium discoideum cDNA clone:dda17m12, 5' ...  1110   0.0    1
(BJ423319) Dictyostelium discoideum cDNA clone:ddv48e21, 5' ...  1090   0.0    2
(BJ441334) Dictyostelium discoideum cDNA clone:ddv46k10, 3' ...   967   0.0    4
(BJ438135) Dictyostelium discoideum cDNA clone:ddv36p11, 3' ...   918   0.0    5
(BJ353199) Dictyostelium discoideum cDNA clone:dda49f11, 3' ...   906   0.0    5
(BJ443557) Dictyostelium discoideum cDNA clone:ddv53f11, 3' ...   904   0.0    5
(BJ446646) Dictyostelium discoideum cDNA clone:ddv63k10, 3' ...   892   0.0    5
(BJ442439) Dictyostelium discoideum cDNA clone:ddv49j24, 3' ...   862   0.0    5
(BJ444469) Dictyostelium discoideum cDNA clone:ddv56p11, 3' ...   827   0.0    6
(BJ444392) Dictyostelium discoideum cDNA clone:ddv56a11, 3' ...   827   0.0    7
(BJ443856) Dictyostelium discoideum cDNA clone:ddv54i09, 3' ...   827   0.0    5
(BJ443345) Dictyostelium discoideum cDNA clone:ddv52k16, 3' ...   827   0.0    6
(BJ442515) Dictyostelium discoideum cDNA clone:ddv50j04, 3' ...   827   0.0    5
(BJ442307) Dictyostelium discoideum cDNA clone:ddv49p12, 3' ...   827   0.0    6
(BJ442084) Dictyostelium discoideum cDNA clone:ddv48e21, 3' ...   827   0.0    6
(BJ441349) Dictyostelium discoideum cDNA clone:ddv46o07, 3' ...   827   0.0    6
(BJ383847) Dictyostelium discoideum cDNA clone:ddc47n08, 3' ...   827   0.0    5
(BJ380523) Dictyostelium discoideum cDNA clone:ddc38o11, 3' ...   827   0.0    5
(BJ372240) Dictyostelium discoideum cDNA clone:ddc11f24, 3' ...   827   0.0    7
(BJ352355) Dictyostelium discoideum cDNA clone:dda46a17, 3' ...   827   0.0    6
(BJ351828) Dictyostelium discoideum cDNA clone:dda44a24, 3' ...   827   0.0    5
(BJ348175) Dictyostelium discoideum cDNA clone:dda32m07, 3' ...   827   0.0    5
(BJ348056) Dictyostelium discoideum cDNA clone:dda32e05, 3' ...   827   0.0    6
(BJ343858) Dictyostelium discoideum cDNA clone:dda17m12, 3' ...   827   0.0    5
(BJ343816) Dictyostelium discoideum cDNA clone:dda17e07, 3' ...   827   0.0    6
(BJ368622) Dictyostelium discoideum cDNA clone:ddc47n08, 5' ...   821   0.0    3
(BJ357949) Dictyostelium discoideum cDNA clone:dda65c10, 3' ...   821   0.0    5
(BJ356516) Dictyostelium discoideum cDNA clone:dda60f16, 3' ...   821   0.0    6
(BJ442047) Dictyostelium discoideum cDNA clone:ddv48n16, 3' ...   819   0.0    6
(BJ436472) Dictyostelium discoideum cDNA clone:ddv31d11, 3' ...   819   0.0    5
(BJ429429) Dictyostelium discoideum cDNA clone:ddv3o09, 3' e...   819   0.0    7
(BJ436381) Dictyostelium discoideum cDNA clone:ddv31b04, 3' ...   791   0.0    5
(BJ436834) Dictyostelium discoideum cDNA clone:ddv32j09, 3' ...   785   0.0    5
(BJ355258) Dictyostelium discoideum cDNA clone:dda56a09, 3' ...   785   0.0    5
(BJ383527) Dictyostelium discoideum cDNA clone:ddc53h11, 3' ...   783   0.0    7
(BJ356258) Dictyostelium discoideum cDNA clone:dda59c21, 3' ...   712   0.0    6
(BJ422104) Dictyostelium discoideum cDNA clone:ddv44i23, 5' ...   648   0.0    2
(BJ358031) Dictyostelium discoideum cDNA clone:dda65e15, 3' ...   634   0.0    6
(BJ439525) Dictyostelium discoideum cDNA clone:ddv40a22, 3' ...   575   0.0    8
(BJ444633) Dictyostelium discoideum cDNA clone:ddv57a05, 3' ...   541   0.0    6
(BJ356789) Dictyostelium discoideum cDNA clone:dda61n12, 3' ...   783   0.0    5
(BJ440428) Dictyostelium discoideum cDNA clone:ddv43m13, 3' ...   771   0.0    5
(BJ353956) Dictyostelium discoideum cDNA clone:dda52d06, 3' ...   345   0.0    5
(BJ440831) Dictyostelium discoideum cDNA clone:ddv44i23, 3' ...   771   0.0    4
(BJ439250) Dictyostelium discoideum cDNA clone:ddv39j20, 3' ...   813   0.0    3
(BJ390304) Dictyostelium discoideum cDNA clone:dds21n19, 5' ...   710   0.0    2
(BJ386371) Dictyostelium discoideum cDNA clone:ddc58c02, 3' ...   504   0.0    3
(BJ445270) Dictyostelium discoideum cDNA clone:ddv58p24, 3' ...   486   e-175  2
(BJ444070) Dictyostelium discoideum cDNA clone:ddv55j06, 3' ...   436   e-160  4
(BJ438309) Dictyostelium discoideum cDNA clone:ddv37d16, 3' ...   373   e-140  4
(BJ440312) Dictyostelium discoideum cDNA clone:ddv43e10, 3' ...   226   e-137  5
(BJ411214) Dictyostelium discoideum cDNA clone:ddv3o09, 5' e...   444   e-120  1
(BJ390086) Dictyostelium discoideum cDNA clone:dds21j05, 5' ...   323   e-115  2
(BJ406490) Dictyostelium discoideum cDNA clone:dds35n12, 3' ...   196   e-110  4
(AU053887) Dictyostelium discoideum slug cDNA, clone SLJ872.      149   e-100  5
(BJ338418) Dictyostelium discoideum cDNA clone:dda61n12, 5' ...   297   1e-82  3
(BJ445692) Dictyostelium discoideum cDNA clone:ddv60f12, 3' ...   172   9e-68  4
(BJ440058) Dictyostelium discoideum cDNA clone:ddv42c14, 3' ...   174   2e-59  3
(BJ416269) Dictyostelium discoideum cDNA clone:ddv25g17, 5' ...   240   2e-58  1
(BJ358889) Dictyostelium discoideum cDNA clone:ddc11f24, 5' ...   238   6e-58  1
(BJ339493) Dictyostelium discoideum cDNA clone:dda65e15, 5' ...   234   1e-56  1
(BJ443218) Dictyostelium discoideum cDNA clone:ddv52c08, 3' ...   200   1e-56  2
(BJ440790) Dictyostelium discoideum cDNA clone:ddv44a24, 3' ...   170   4e-56  2
(BJ352487) Dictyostelium discoideum cDNA clone:dda46m21, 3' ...   198   5e-46  1
(BJ431782) Dictyostelium discoideum cDNA clone:ddv15f13, 3' ...    72   8e-44  6
(BJ405722) Dictyostelium discoideum cDNA clone:dds32p14, 3' ...   176   2e-39  1
(BJ445140) Dictyostelium discoideum cDNA clone:ddv58f14, 3' ...   159   3e-38  2
(BJ423265) Dictyostelium discoideum cDNA clone:ddv48j13, 5' ...   101   5e-30  2
(BJ439456) Dictyostelium discoideum cDNA clone:ddv40c18, 3' ...    76   2e-28  3
(BJ431844) Dictyostelium discoideum cDNA clone:ddv15d19, 3' ...    76   2e-26  4
(BE844390) EST134 Apis mellifera female antennae Lambda ZAP ...    56   2e-15  4
(DY887515) CeleSEQ3898 Cunninghamella elegans pBluescript (E...    58   1e-14  3
(DY890172) CeleSEQ8071 Cunninghamella elegans pBluescript (E...    58   2e-12  3
(DB753997) Apis mellifera head cDNA, RIKEN full-length enric...    56   1e-11  3
(EC826299) SME00002136 esmbsro2 Sawyeria marylandensis cDNA,...    58   7e-11  2
(AZ685086) ENTMW65TR Entamoeba histolytica Sheared DNA Entam...    64   2e-08  3
(AB194071) Entamoeba histolytica EhVPS35 gene for vacuolar p...    64   2e-07  3
(AY193838) Entamoeba histolytica vacuolar sorting protein 35...    64   2e-07  3
(DB738777) Apis mellifera head cDNA, RIKEN full-length enric...    40   4e-07  3
(AZ533812) ENTDW59TR Entamoeba histolytica Sheared DNA Entam...    58   1e-06  3
(AZ691304) ENTLW09TR Entamoeba histolytica Sheared DNA Entam...    64   2e-05  1
(DB741277) Apis mellifera head cDNA, RIKEN full-length enric...    42   2e-05  3
(DB880133) Populus nigra mRNA, clone: PnFL2-032_D13, 5'end.        42   6e-04  4
(AK228153) Arabidopsis thaliana mRNA for putative vacuolar s...    44   0.002  2
(GE483901) CCFS1261.b1_J03.ab1 CCF(STU) sunflower Helianthus...    50   0.003  2
(EW764614) ST020034A21G04 Normalized and subtracted western ...    38   0.004  2
(EW773805) ST020034A21G09 Normalized and subtracted western ...    38   0.004  2
(EW766776) ST020001B20D07 Normalized and subtracted western ...    38   0.004  2
(EW773909) ST020034B21H10 Normalized and subtracted western ...    38   0.004  2
(EL348068) CCEL4215.b1_N22.ab1 CCE(LMS) endive Cichorium end...    44   0.007  3
(EL567395) Physarum14069 Physarum polycephalum starvation st...    46   0.010  2
(BP188068) Dugesia japonica cDNA, clone: 01668_HH, expressed...    48   0.014  3
(DT790943) 126521437 TL1 Tribolium castaneum cDNA clone 44E1...    40   0.016  2
(DT792316) 126479975 TL1 Tribolium castaneum cDNA clone 25C2...    40   0.016  2
(AC007396) Genomic sequence for Arabidopsis thaliana BAC T4O...    44   0.022  5
(DB753442) Apis mellifera head cDNA, RIKEN full-length enric...    40   0.078  2
(DB742236) Apis mellifera head cDNA, RIKEN full-length enric...    40   0.081  2
(AM053743) Epidinium ecaudatum EST, clone Eec05_D12.               42   0.096  2
(EH687205) CCIM11974.b1_K17.ab1 CCI(LMS) chicory Cichorium i...    36   0.11   3
(AM658202) Entamoeba moshkovskii FIC GSS, clone mosh079a03.p1k.    40   0.15   3
(EX652730) 256771718 Pea aphid whole body normalized full le...    34   0.84   2
(EX632658) 256563577 Pea aphid whole body normalized full le...    34   0.84   2
(FF293731) 279295032 Pea aphid whole body normalized full le...    34   0.84   2
(AM653542) Entamoeba moshkovskii FIC GSS, clone mosh001h09.q1k.    40   1.0    2
(AM649893) Entamoeba moshkovskii FIC GSS, clone mosh071e11.q1k.    48   1.2    1
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    48   1.2    1
(AP010643) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   2.4    2
(AP008096) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   2.4    2
(EH012888) USDA-FP_185744 Lysiphlebus testaceipes adult whol...    42   3.3    2
(EB223488) PEG002-C-104408-501 Normalized Pedal-Pleural Gang...    44   4.6    2
(AL929202) Zebrafish DNA sequence from clone DKEY-147L19 in ...    46   4.7    1
(CR382135) Debaryomyces hansenii strain CBS767 chromosome C ...    46   4.7    1
(AM423433) Vitis vinifera contig VV78X174301.7, whole genome...    46   4.7    1
(AC215474) Solanum lycopersicum chromosome 2 clone C02SLm002...    46   4.7    1
(AC215364) Solanum lycopersicum chromosome 2 clone C02HBa003...    46   4.7    1
(CU019633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.7    1
(ER602308) 1093016252348 Global-Ocean-Sampling_GS-36-01-01-2...    46   4.7    1
(ER310793) 1092343792748 Global-Ocean-Sampling_GS-34-01-01-1...    46   4.7    1
(EJ613221) 1092962965590 Global-Ocean-Sampling_GS-29-01-01-1...    46   4.7    1
(EJ132156) 1092343567298 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.7    1
(DU959804) 230715 Tomato MboI BAC Library Solanum lycopersic...    46   4.7    1
(CU080495) Equus caballus GSS, BAC clone CH241-174E19, SP6 e...    46   4.7    1
(DV623451) 92893.1 Cold Sweetening C Solanum tuberosum cDNA ...    46   4.7    1
(CN913733) 030108ABMA005734HT (ABMA) M9 phloem Malus x domes...    46   4.7    1
(CN911517) 021121ABMA002129HT (ABMA) M9 phloem Malus x domes...    46   4.7    1
(CN904695) 010926ABDA002353HT (ABDA) Royal Gala fruit stored...    46   4.7    1
(CN892951) 010613AAXA006712HT (AAXA) Royal Gala 126 DAFB fru...    46   4.7    1
(BQ510152) EST617567 Generation of a set of potato cDNA clon...    46   4.7    1
(FG134498) AGN_ELP014xf08f1.ab1 AGN_ELP Nicotiana tabacum cD...    46   4.7    1
(FE934382) AHAI-aab17e06.b1 Pristionchus_pacificus_AHAI1_EST...    46   4.7    1
(AF040645) Caenorhabditis elegans cosmid F52C6, complete seq...    42   5.1    3
(BY819095) Thellungiella halophila cDNA clone: RTFL01-28-L20...    42   5.5    2
(EB238172) PEG003-C-223796-501 Normalized Pedal-Pleural Gang...    44   5.6    2
(EE132875) SiJWA08ADE Lausanne fire ant library Solenopsis i...    38   5.7    2
(BW636078) Dugesia ryukyuensis mRNA, clone: Dr_sW_004_F03, 5...    32   5.9    3
(EL576969) Physarum14074 Physarum polycephalum starvation st...    36   7.1    2
(EK038489) 1092959490405 Global-Ocean-Sampling_GS-31-01-01-1...    42   7.6    2
(AC105548) Rattus norvegicus clone CH230-186C15, WORKING DRA...    32   8.3    2

>(BJ326650) Dictyostelium discoideum cDNA clone:dda17m12, 5' end,
           single read.
          Length = 579

 Score = 1110 bits (560), Expect = 0.0
 Identities = 560/560 (100%)
 Strand = Plus / Plus


Query: 70  ccaacagtagcacaaactttatcaccagaagaagaacaagcaaaattctttgaagaagct 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  ccaacagtagcacaaactttatcaccagaagaagaacaagcaaaattctttgaagaagct 79


Query: 130 aaaaacaatgttatgattcaaggtcatcacatgaaattatctttggataactcaaaatta 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aaaaacaatgttatgattcaaggtcatcacatgaaattatctttggataactcaaaatta 139


Query: 190 atggatgcactcaagtatgcctcaaacattatcaatgaactccgtacaagtttactttca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atggatgcactcaagtatgcctcaaacattatcaatgaactccgtacaagtttactttca 199


Query: 250 ccaaaatcatattatgctctctatttagttgcttttgattatcttcaatacttgaatact 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccaaaatcatattatgctctctatttagttgcttttgattatcttcaatacttgaatact 259


Query: 310 tatctctatgaagagaaacatggtaagaaaatgattgaactttatgaagttgtacaacat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatctctatgaagagaaacatggtaagaaaatgattgaactttatgaagttgtacaacat 319


Query: 370 gctggtaatgttttaccaagattatatttattaattacagttggatcagtttatattaaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctggtaatgttttaccaagattatatttattaattacagttggatcagtttatattaaa 379


Query: 430 actaaacaagcaccagcaaaagatgtattaaaagatttaattgaaatgtgtagaggtgtt 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actaaacaagcaccagcaaaagatgtattaaaagatttaattgaaatgtgtagaggtgtt 439


Query: 490 caacatccaacaagaggtttatttttaagacattatcttagtgaagttaccaaagataaa 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caacatccaacaagaggtttatttttaagacattatcttagtgaagttaccaaagataaa 499


Query: 550 ttaccagatattgattcatccgttgagaatggtacagttatggattcaattgatttcatc 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttaccagatattgattcatccgttgagaatggtacagttatggattcaattgatttcatc 559


Query: 610 attcaaaatttcacagagac 629
           ||||||||||||||||||||
Sbjct: 560 attcaaaatttcacagagac 579

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,110,092,163
Number of extensions: 120817926
Number of successful extensions: 9205676
Number of sequences better than 10.0: 139
Length of query: 1837
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1813
Effective length of database: 96,409,374,237
Effective search space: 174790195491681
Effective search space used: 174790195491681
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.27
Homology vs Protein 
Query= Contig-U16318-1 (Contig-U16318-1Q) /CSM_Contig/Contig-U16318-1Q.Seq.d
         (1837 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C24) RecName: Full=Vacuolar sorting protein 35;                   561   e-158
AM425621_1(AM425621|pid:none) Vitis vinifera contig VV78X235801....   340   8e-92
E84556(E84556)probable vacuolar sorting-associated protein [impo...   340   1e-91
BT008553_1(BT008553|pid:none) Arabidopsis thaliana clone U50265 ...   340   1e-91
T08858(T08858)vacuolar protein-sorting protein homolog A_TM017A0...   333   2e-89
AC149634_2(AC149634|pid:none) Medicago truncatula clone mth2-5i1...   328   4e-88
AC108906_23(AC108906|pid:none) Oryza sativa chromosome 3 BAC OSJ...   324   8e-87
BC167336_1(BC167336|pid:none) Xenopus tropicalis vacuolar protei...   322   4e-86
BT059024_1(BT059024|pid:none) Salmo salar clone ssal-rgf-521-005...   322   4e-86
AL928906_3(AL928906|pid:none) Zebrafish DNA sequence from clone ...   322   4e-86
BC117573_1(BC117573|pid:none) Danio rerio zgc:136268, mRNA (cDNA...   322   4e-86
AB172209_1(AB172209|pid:none) Macaca fascicularis brain cDNA clo...   321   7e-86
AK223218_1(AK223218|pid:none) Homo sapiens mRNA for vacuolar pro...   319   2e-85
(Q9EQH3) RecName: Full=Vacuolar protein sorting-associated prote...   319   2e-85
AB169708_1(AB169708|pid:none) Macaca fascicularis brain cDNA, cl...   319   2e-85
AK166821_1(AK166821|pid:none) Mus musculus blastocyst blastocyst...   319   2e-85
CR857748_1(CR857748|pid:none) Pongo abelii mRNA; cDNA DKFZp468J2...   319   2e-85
AB368490_1(AB368490|pid:none) Arabidopsis thaliana VPS35 mRNA fo...   318   3e-85
AF175265_1(AF175265|pid:none) Homo sapiens vacuolar sorting prot...   318   3e-85
CR926124_1(CR926124|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...   314   8e-84
AE017343_328(AE017343|pid:none) Cryptococcus neoformans var. neo...   311   7e-83
CR382131_711(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   301   4e-80
FN357821_4(FN357821|pid:none) Schistosoma mansoni genome sequenc...   289   3e-76
BT015203_1(BT015203|pid:none) Drosophila melanogaster RE65032 fu...   287   1e-75
AE013599_3561(AE013599|pid:none) Drosophila melanogaster chromos...   287   1e-75
AP007155_510(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   276   1e-72
AM270368_16(AM270368|pid:none) Aspergillus niger contig An16c016...   275   3e-72
DQ178636_1(DQ178636|pid:none) Caenorhabditis elegans vacuolar pr...   275   5e-72
FN392319_1295(FN392319|pid:none) Pichia pastoris GS115 chromosom...   270   1e-70
CU638744_811(CU638744|pid:none) Podospora anserina genomic DNA c...   270   1e-70
AY803790_1(AY803790|pid:none) Reclinomonas americana vacuolar pr...   269   2e-70
AY803791_1(AY803791|pid:none) Reclinomonas americana vacuolar pr...   268   7e-70
X87371_1(X87371|pid:none) S.cerevisiae DNA from chromosome X (co...   258   4e-67
(P34110) RecName: Full=Vacuolar protein sorting-associated prote...   258   4e-67
S42186_1(S42186|pid:none) VPS35=vacuolar protein sorting [Saccha...   258   4e-67
AE016818_240(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...   258   4e-67
AE014186_95(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...   245   3e-63
CR380955_256(CR380955|pid:none) Candida glabrata strain CBS138 c...   244   6e-63
FM992689_510(FM992689|pid:none) Candida dubliniensis CD36 chromo...   236   2e-60
(O74552) RecName: Full=Vacuolar protein sorting-associated prote...   230   1e-58
AC104321_1(AC104321|pid:none) Oryza sativa chromosome 3 BAC OSJN...   211   6e-53
AM776833_1(AM776833|pid:none) Anopheles arabiensis partial ENSAN...   209   2e-52
AY803786_1(AY803786|pid:none) Hartmannella vermiformis vacuolar ...   192   5e-47
AK023650_1(AK023650|pid:none) Homo sapiens cDNA FLJ13588 fis, cl...   189   2e-46
BC169004_1(BC169004|pid:none) Rattus norvegicus vacuolar protein...   152   3e-35
AM494958_53(AM494958|pid:none) Leishmania braziliensis chromosom...   152   5e-35
AY811894_1(AY811894|pid:none) Schistosoma japonicum SJCHGC03677 ...   142   3e-32
AL928906_4(AL928906|pid:none) Zebrafish DNA sequence from clone ...   102   6e-20
AL512769_1(AL512769|pid:none) Homo sapiens mRNA; cDNA DKFZp434E1...    79   5e-17
BT072172_1(BT072172|pid:none) Salmo salar clone ssal-rgf-514-377...    74   2e-16
AK227620_1(AK227620|pid:none) Arabidopsis thaliana mRNA for vacu...    90   2e-16
AY193841_1(AY193841|pid:none) Giardia intestinalis vacuolar sort...    87   2e-15
BT061953_1(BT061953|pid:none) Zea mays full-length cDNA clone ZM...    81   1e-13
AK229772_1(AK229772|pid:none) Arabidopsis thaliana mRNA for puta...    70   3e-10
AY061234_1(AY061234|pid:none) Drosophila melanogaster LD17594 fu...    69   8e-10
AY803789_1(AY803789|pid:none) Entamoeba histolytica vacuolar pro...    59   8e-07
AY224552_1(AY224552|pid:none) Oryza sativa (japonica cultivar-gr...    45   0.009
EU951797_1(EU951797|pid:none) Zea mays clone 1000584 hypothetica...    42   0.076
AX884976_1(AX884976|pid:none) Sequence 839 from Patent EP1033401.      41   0.17
AE016795_2111(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos...    37   3.2
BA000037_2068(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch...    36   4.2
BC156301_1(BC156301|pid:none) Synthetic construct Mus musculus c...    36   5.5
DQ158856_57(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    35   9.3
CP001056_2553(CP001056|pid:none) Clostridium botulinum B str. Ek...    35   9.3
(B3E159) RecName: Full=50S ribosomal protein L11;  &CP000975_795...    35   9.3

>(Q54C24) RecName: Full=Vacuolar sorting protein 35;
          Length = 781

 Score =  561 bits (1445), Expect = e-158
 Identities = 289/315 (91%), Positives = 289/315 (91%)
 Frame = +1

Query: 70   PTVAQTLSPXXXXXXXXXXXXNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLS 249
            PTVAQTLSP            NNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLS
Sbjct: 7    PTVAQTLSPEEEQAKFFEEAKNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLS 66

Query: 250  PKSYYALYLVAFDYLQYLNTYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIK 429
            PKSYYALYLVAFDYLQYLNTYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIK
Sbjct: 67   PKSYYALYLVAFDYLQYLNTYLYEEKHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIK 126

Query: 430  TKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFI 609
            TKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFI
Sbjct: 127  TKQAPAKDVLKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENGTVMDSIDFI 186

Query: 610  IQNFTETNKLWVRMQHQAPTKDXXXXXXXXXXXXXXVGKNLSRLAQLDGVDQKTYSEVVL 789
            IQNFTETNKLWVRMQHQAPTKD              VGKNLSRLAQLDGVDQKTYSEVVL
Sbjct: 187  IQNFTETNKLWVRMQHQAPTKDRERRENERLELRLLVGKNLSRLAQLDGVDQKTYSEVVL 246

Query: 790  PKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLI 969
            PKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLI
Sbjct: 247  PKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLI 306

Query: 970  DRLANFATRNADLVP 1014
            DRLANFATRNADLVP
Sbjct: 307  DRLANFATRNADLVP 321

 Score =  303 bits (775), Expect(2) = e-106
 Identities = 168/198 (84%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
 Frame = +1

Query: 1213 KLWPDIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLL 1392
            K   DIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLL
Sbjct: 577  KALADIKLADLSFRLYLQALQTFDHCGLVSRVKELAIKALLIFQEDIADFKAQVMALQLL 636

Query: 1393 ISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDS 1572
            ISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDS
Sbjct: 637  ISTLNSLSIPNEEIYESLAAQTIKQASRLLLPQDQAKLISTCSHLFWVDNPSRQYQNPDS 696

Query: 1573 VLQALKKALSIISNESSPGLGTSC*HF-E*MSXXXXXXXXXXFQFNSFQIRLNVIRTTHV 1749
            VLQALKKALSIISNESSPGLGT      E +            QF S  + L  IRTTHV
Sbjct: 697  VLQALKKALSIISNESSPGLGTFVDILNECLFYCDKETDAVPIQFVSDLVEL--IRTTHV 754

Query: 1750 KEADPALPYLQNTIKYIQ 1803
            KEADPALPYLQNTIKYIQ
Sbjct: 755  KEADPALPYLQNTIKYIQ 772

 Score =  108 bits (271), Expect(2) = e-106
 Identities = 54/54 (100%), Positives = 54/54 (100%)
 Frame = +3

Query: 1062 IRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALA 1223
            IRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALA
Sbjct: 527  IRHTLVPLVFCSLRFIRNFKQQVDSGVISLDENKWIAIGSKIFTFVSETIKALA 580

 Score = 37.4 bits (85), Expect = 1.9
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 1643 VDILNECLFYCDKES*CCSNSIXXXXXXXXXXXXXXXXXIQHYHIYKILSNTFN---TQN 1813
            VDILNECLFYCDKE+    +++                  +       L NT     +QN
Sbjct: 720  VDILNECLFYCDKET----DAVPIQFVSDLVELIRTTHVKEADPALPYLQNTIKYIQSQN 775

Query: 1814 YKGISI 1831
            YKGISI
Sbjct: 776  YKGISI 781

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 2,715,922,492
Number of extensions: 50737738
Number of successful extensions: 112785
Number of sequences better than 10.0: 65
Number of HSP's gapped: 112649
Number of HSP's successfully gapped: 134
Length of query: 612
Length of database: 1,061,185,681
Length adjustment: 135
Effective length of query: 477
Effective length of database: 619,945,201
Effective search space: 295713860877
Effective search space used: 295713860877
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.81  gvh: 0.23  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U16318-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0