Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Contig-U16316-1Q.Seq.d (1510 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ419371) Dictyostelium discoideum cDNA clone:ddv35l21, 5' ... 595 0.0 2 (BJ392031) Dictyostelium discoideum cDNA clone:dds26j01, 5' ... 1021 0.0 2 (BJ335117) Dictyostelium discoideum cDNA clone:dda49b06, 5' ... 692 0.0 3 (BJ324584) Dictyostelium discoideum cDNA clone:dda7c03, 5' e... 589 0.0 2 (BJ339133) Dictyostelium discoideum cDNA clone:dda64c11, 5' ... 684 0.0 2 (BJ426425) Dictyostelium discoideum cDNA clone:ddv58n24, 5' ... 500 0.0 2 (AP001589) Homo sapiens genomic DNA, chromosome 18q22 clone:... 36 0.004 12 (AF165818) Guillardia theta nucleomorph chromosome 1, comple... 38 0.009 12 (BX901883) Zebrafish DNA sequence from clone DKEY-151M15 in ... 38 0.010 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.015 15 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.029 13 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.047 17 (CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 38 0.066 20 (EK232571) 1095460185266 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.11 4 (BJ389015) Dictyostelium discoideum cDNA clone:dds17k04, 5' ... 36 0.12 3 (EK280664) 1095462293733 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.13 4 (BH211302) Sm1-40B13.TF Sm1 Schistosoma mansoni genomic clon... 46 0.19 2 (BX548049) Zebrafish DNA sequence from clone DKEY-217J16 in ... 46 0.21 5 (AC005245) Homo sapiens chromosome 17, clone hRPK.642_C_21, ... 50 0.25 1 (AL325905) Tetraodon nigroviridis genome survey sequence T3 ... 50 0.25 1 (BD099498) Novel genes cloned in humanneuroblastoma and frag... 40 0.33 2 (BD019560) Novel gene and novel gene fragment cloned in huma... 40 0.33 2 (AC020194) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 0.37 6 (EJ882940) 1093018404876 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.38 2 (EJ862592) 1093018216030 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.42 2 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.50 15 (AF083031) Guillardia theta nucleomorph chromosome 3, comple... 38 0.53 9 (CJ452997) Macaca fascicularis mRNA, clone: QflA-18676, 5' e... 34 0.69 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.69 15 (BJ387843) Dictyostelium discoideum cDNA clone:dds5j11, 5' e... 36 0.73 2 (AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 0.75 11 (AJ010592) Guillardia theta DNA for complete sequence of nuc... 38 0.83 11 (EK437879) 1095521102432 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1 (EK430908) 1095516150955 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1 (DE172519) Bombyx mori genomic DNA, Fosmid clone:RO0322-A03_R. 48 0.97 1 (CT365575) Sus scrofa genomic clone CH242-457K24, genomic su... 48 0.97 1 (CL584140) OB__Ba0076P12.r OB__Ba Oryza brachyantha genomic ... 48 0.97 1 (CL544473) OB__Ba0072L12.f OB__Ba Oryza brachyantha genomic ... 48 0.97 1 (EL447658) CHTM26399.b1_M24.ab1 CHT(LMS) Jerusalem artichoke... 48 0.97 1 (CJ444184) Macaca fascicularis mRNA, clone: QccE-21772, 5' e... 48 0.97 1 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 1.1 15 (BX206202) Danio rerio genomic clone DKEY-240A14, genomic su... 46 1.1 2 (AC183492) Brassica oleracea Contig G, complete sequence. 38 1.1 9 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 1.2 12 (AR556139) Sequence 11270 from patent US 6747137. 46 1.4 2 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 1.4 16 (CW955204) TcB45.2_D01_SP6 Tribolium BAC library Tribolium c... 40 1.4 2 (EK045312) 1092959547366 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.5 4 (AC140551) Medicago truncatula clone mth2-80i8, complete seq... 36 1.6 7 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 1.8 13 (BX005291) Zebrafish DNA sequence from clone CH211-186F16 in... 46 1.8 4 (AM463813) Vitis vinifera, whole genome shotgun sequence, co... 44 2.2 2 (Z52408) H.sapiens (D22S1144) DNA segment containing (CA) re... 36 2.2 2 (CU469501) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.7 10 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 2.7 21 (BX511250) Zebrafish DNA sequence from clone CH211-57K11 in ... 38 3.0 10 (CJ455516) Macaca fascicularis mRNA, clone: QflA-21304, 5' e... 34 3.1 4 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 3.1 6 (AC010888) Homo sapiens BAC clone RP11-418N16 from 2, comple... 38 3.1 12 (EK418066) 1095515481155 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.4 3 (AC025807) Homo sapiens clone RP11-657G2, WORKING DRAFT SEQU... 40 3.5 4 (ER329742) 1092344247601 Global-Ocean-Sampling_GS-34-01-01-1... 34 3.8 3 (CU468916) Zebrafish DNA sequence from clone CH211-22C18 in ... 46 3.8 1 (CU457774) Zebrafish DNA sequence from clone CH73-52L15 in l... 46 3.8 1 (CU302293) Zebrafish DNA sequence from clone DKEY-178I20 in ... 46 3.8 1 (CR396586) Zebrafish DNA sequence from clone DKEY-184A18 in ... 46 3.8 1 (CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 46 3.8 1 (CR352290) Zebrafish DNA sequence from clone DKEY-107G12 in ... 46 3.8 1 (BX901925) Zebrafish DNA sequence from clone DKEYP-86C11 in ... 46 3.8 1 (BX897657) Zebrafish DNA sequence from clone DKEYP-84C2. 46 3.8 1 (BX465187) Zebrafish DNA sequence from clone DKEYP-6C7 in li... 46 3.8 1 (BX296554) Zebrafish DNA sequence from clone DKEYP-30G1 in l... 46 3.8 1 (BX248410) Zebrafish DNA sequence from clone DKEY-65M5 in li... 46 3.8 1 (BX004803) Zebrafish DNA sequence from clone CH211-119C20 in... 46 3.8 1 (BX001030) Zebrafish DNA sequence from clone CH211-234P6 in ... 46 3.8 1 (AL954834) Zebrafish DNA sequence from clone CH211-286D20. 46 3.8 1 (AC119855) Mus musculus chromosome 3, clone RP23-243H19, com... 46 3.8 1 (AC102561) Mus musculus chromosome 7, clone RP23-201O19, com... 46 3.8 1 (AC225609) Callithrix jacchus BAC clone CH259-161K20 from ch... 46 3.8 1 (X95099) C.albicans mRNA for neutral trehalase. 46 3.8 1 (EU024868) Fragaria vesca subsp. americana clone fosmid 73I2... 46 3.8 1 (CU024879) M.truncatula DNA sequence from clone MTH2-70F3 on... 46 3.8 1 (AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.8 1 (AM467147) Vitis vinifera, whole genome shotgun sequence, co... 46 3.8 1 (AL606989) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 3.8 1 (AC174375) Medicago truncatula chromosome 6 clone mth2-56h19... 46 3.8 1 (AC156827) Medicago truncatula chromosome 6 clone mth2-15c17... 46 3.8 1 (CS604481) Sequence 3467 from Patent WO2007039234. 46 3.8 1 (CS603657) Sequence 2643 from Patent WO2007039234. 46 3.8 1 (BD099767) Novel genes cloned in humanneuroblastoma and frag... 46 3.8 1 (BD019829) Novel gene and novel gene fragment cloned in huma... 46 3.8 1 (AL031633) Caenorhabditis elegans YAC Y39A1A. 46 3.8 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 46 3.8 1 (AC159992) Mus musculus chromosome 7 clone RP23-305K13 map 7... 46 3.8 1 (CR925702) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.8 1 (AC170888) Mus musculus chromosome 12 clone RP24-72M20, WORK... 46 3.8 1 (AC170180) Mus musculus chromosome 7 clone RP24-142A13 map 7... 46 3.8 1 (AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK... 46 3.8 1 (AC167542) Mus musculus chromosome 7 clone RP23-108F4 map 7,... 46 3.8 1 (AC163334) Mus musculus chromosome 7 clone RP23-458E6 map 7,... 46 3.8 1 (AG756892) Macaca fuscata fuscata DNA, clone: MSB2-224D24_R,... 46 3.8 1 (B21574) T19G5-Sp6 TAMU Arabidopsis thaliana genomic clone T... 46 3.8 1 (BX167202) Danio rerio genomic clone DKEY-123A20, genomic su... 46 3.8 1 (EG915339) EST_ssal_evf_54701 ssalevf mixed_tissue Salmo sal... 46 3.8 1 (EE080216) S2B22093 Buds (VvS2) Vitis vinifera cDNA clone S2... 46 3.8 1 (EE067391) C2B06627 Buds/little clusters (VvC2) Vitis vinife... 46 3.8 1 (EC996314) WIN117.C21_O01 Muscat Hamburg pre-veraison berry ... 46 3.8 1 (EC992419) WIN1145.C21_G13 Muscat Hamburg pre-veraison berry... 46 3.8 1 (EC992222) WIN1144.C21_N13 Muscat Hamburg pre-veraison berry... 46 3.8 1 (EC979714) WIN112.C21_L10 Muscat Hamburg pre-veraison berry ... 46 3.8 1 (EC942862) WIN0527.C21_B04 Cab Sauv flower, leaf and root no... 46 3.8 1 (EC935917) WIN0510.C21_M23 Cab Sauv flower, leaf and root no... 46 3.8 1 (EC926645) WIN0212.TB24_P14 Cab Sauv flower, leaf and root n... 46 3.8 1 (EB667323) 6X_JR_D09 pAPO Cenchrus ciliaris cDNA 5', mRNA se... 46 3.8 1 (DW165947) CLVY446.b1_K15.ab1 CLV(XYZ) lettuce virosa Lactuc... 46 3.8 1 (DT518047) WS02436.B21_A19 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1 (DT513390) WS02421.B21_O19 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1 (DT486158) WS02530.B21_D04 PT-MB-N-A-15 Populus trichocarpa ... 46 3.8 1 (DT480874) WS02530.BR_D04 PT-MB-N-A-15 Populus trichocarpa c... 46 3.8 1 (DN499727) T082A09.5pR Populus shoot meristem cDNA library P... 46 3.8 1 (DK450875) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK448794) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK445171) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK445053) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK444584) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK442874) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK416910) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK410595) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK407447) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK406405) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK405238) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK404162) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK403893) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK401386) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK400620) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK398820) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1 (DK373545) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK372480) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK367791) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK365087) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK363309) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1 (DK341538) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK339959) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK339231) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK338941) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK336372) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK336298) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK335328) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK334615) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK333807) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK330359) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK329024) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK328283) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK327878) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK326731) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK324924) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK323583) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (DK304529) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1 (CV275647) WS0177.B21_C18 PTxD-NR-A-8 Populus trichocarpa x ... 46 3.8 1 (CN518799) GQ0104.B3_P17 GQ010 Populus trichocarpa x Populus... 46 3.8 1 (CF543007) S014680-024-030-H12-SP6 MPIZ-ADIS-024-leaf Beta v... 46 3.8 1 (CF207460) CAB20001_IVa_Ra_B12 Cabernet Sauvignon Flower blo... 46 3.8 1 (BU836045) T082A09 Populus apical shoot cDNA library Populus... 46 3.8 1 (AY661659) Sorghum bicolor clone BAC 75D9, complete sequence. 36 4.0 6 (ER313203) 1092343820990 Global-Ocean-Sampling_GS-34-01-01-1... 34 4.1 3 (ER479679) 1093015256487 Global-Ocean-Sampling_GS-35-01-01-1... 40 4.1 3 (EJ504557) 1095403678094 Global-Ocean-Sampling_GS-28-01-01-1... 38 4.2 3 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 4.4 9 (EA743654) Sequence 15100 from patent US 7368527. 42 4.4 4 (EJ792318) 1093017383192 Global-Ocean-Sampling_GS-30-02-01-1... 38 4.6 3 (EJ901009) 1093018489876 Global-Ocean-Sampling_GS-30-02-01-1... 38 4.8 3 (BJ424732) Dictyostelium discoideum cDNA clone:ddv53k10, 5' ... 34 5.1 3 (AF476931) Vaucheria dichotoma ribulose-1,5-bisphosphate car... 32 5.3 3 (FI281666) AdH1029-CPY2-G20TF AdH1 Arachis duranensis genomi... 38 5.5 2 (AP009984) Lotus japonicus genomic DNA, clone: LjT10D02, TM0... 44 5.6 5 (BJ363323) Dictyostelium discoideum cDNA clone:ddc26g05, 5' ... 36 5.7 3 (ER333282) 1092344283328 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 2 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 6.0 22 (BX323460) Zebrafish DNA sequence from clone DKEYP-47G11 in ... 44 6.1 4 (CP000993) Borrelia recurrentis A1, complete genome. 40 6.4 21 (CU914708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.6 4 (AC185446) Zea mays chromosome unknown clone CH201-346O21; Z... 32 6.9 2 (AC145261) Zea mays clone ZMMBBc0001A01, *** SEQUENCING IN P... 32 7.0 2 (AC194345) Zea mays chromosome 4 clone CH201-1A1; ZMMBBc0001... 32 7.0 2 (CS468878) Sequence 69 from Patent EP1748080. 36 7.0 12 (CS419355) Sequence 69 from Patent WO2006094836. 36 7.0 12 (AC178914) Strongylocentrotus purpuratus clone R3-3115C9, WO... 32 7.1 2 (EF647601) Solanum lycopersicum chromosome 9 clone C09HBa009... 36 7.2 5 (BJ441175) Dictyostelium discoideum cDNA clone:ddv45l22, 3' ... 42 7.2 2 (AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 34 7.5 9 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 8.9 11 (AG038842) Pan troglodytes DNA, clone: PTB-015M07.R. 34 9.4 2 (BJ416207) Dictyostelium discoideum cDNA clone:ddv25f11, 5' ... 42 9.5 2 (AG708306) Macaca fuscata fuscata DNA, clone: MSB2-151F05_R,... 34 9.6 2 (AV407419) Lotus japonicus cDNA clone:MWL023a11_r, 5' end. 42 9.6 2 (AC007727) Arabidopsis thaliana chromosome 1 BAC F8K7 sequen... 32 9.8 9 (AW720053) LjNEST13a4r Lotus japonicus nodule library 5 and ... 42 9.8 2 (BJ389124) Dictyostelium discoideum cDNA clone:dds17h16, 5' ... 36 9.8 2
>(BJ419371) Dictyostelium discoideum cDNA clone:ddv35l21, 5' end, single read. Length = 606
Score = 595 bits (300), Expect(2) = 0.0 Identities = 305/307 (99%) Strand = Plus / Plus
Query: 905 ctggtagtattgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaa 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctggtagtattgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaa 60
Query: 965 agggtggtgatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtg 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agggtggtgatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtg 120
Query: 1025 gttatcatgcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttg 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gttatcatgcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttg 180
Query: 1085 catcaaaagcattctctactaatccaaacccagaaattcatatttgggaattagaatcac 1144 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 181 catcaaaagcattctctactaatccaaatccagaaattcatatttgggaattagaatcac 240
Query: 1145 atacaccaaagttacgtttagaagataccattaaattttatatagatagtgaaataccac 1204 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atacaccaaagttacgnttagaagataccattaaattttatatagatagtgaaataccac 300
Query: 1205 aagcaat 1211 ||||||| Sbjct: 301 aagcaat 307
Score = 529 bits (267), Expect(2) = 0.0 Identities = 270/271 (99%) Strand = Plus / Plus
Query: 1240 gcaattgctgcaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 1299 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 gcaattgctacaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 395
Query: 1300 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 1359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 396 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 455
Query: 1360 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 1419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 515
Query: 1420 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 1479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 575
Query: 1480 ggtaaccaagtgaaaatcttaaataaaccag 1510 ||||||||||||||||||||||||||||||| Sbjct: 576 ggtaaccaagtgaaaatcttaaataaaccag 606
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,821,077,584 Number of extensions: 112920724 Number of successful extensions: 10051926 Number of sequences better than 10.0: 200 Length of query: 1510 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 1486 Effective length of database: 96,409,374,237 Effective search space: 143264330116182 Effective search space used: 143264330116182 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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