Contig-U16316-1
Contig ID Contig-U16316-1
Contig update 2004. 6.11
Contig sequence
>Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Contig-U16316-1Q.Seq.d
ACTGTTGGCCTACTGGTAATGGTGCAATCTCTTAAGNAAGNATTTTATAT
TCAAAATCAAAATCAAACTCAAATTACAAATGCATCACCAGTATCTAGAT
GTTATGGTCATAAAAGTACAATTAAAAAGTTGGCAGCATCTAAAAATTCA
CCATATCTTTCATCTTTAGATTATCAAAATAATGTTATTATTTGGAATTC
AACAGATTCAAGTAAAATTCAATCACCAAATTATTTAATTGATATTGGAT
CATTTCCATCATATTATTCAATGACATGGTCACCAAATCAAAAGTTTTGT
TTCTTTTCAAATAGAGATGGTATATTTGTATATTATATAGAGATTAGTCA
AGAGAATTATGTTAAATCATCATTGTTATCAATTGGTATGATTGAAGAAT
CAACATTAGAGGATGATTGGATTGATGAAGTTCATATAGTTGATCCATTA
AATTTAATTTATCATTATAATTCAATGGATTTTGATAAGAATAAAGTTAA
TAACGACAGCAGTAGACGTAATGGTGGTGGTGGTGGTGAAAGTAGTGTTT
TATTACCATACCAATTCTTTTTAATTGGTTTGAATAAACATTCAGATAAA
TTATATGTTTGGGGTGTTAGTGTTGAAAAGGATTTCAAATATTCTTCATC
ATCCTCTCCATCAATTTTAAAATCAAAATTATTAGCAACAAAAGAATTTG
AAAGGGATTCAAGAATTTCTTGTATTTGTGCTGCACCAAAAGGTATTTTC
GATATGACAACTATTAATAAAATGAATAAAAATCAAAATGAAGATTTTAG
TGATAATGATGATGACGATAATAATGACGATAATAATAATAATAATAATA
ATGAAAAGTACAATAATGGAGATAGAGTAGTTTTAACACATCCAATTTGT
ATTACTGGTAGTATTGATGGTTATGTATCAGTATTTGGTATAACACCAAA
AATATCATTTGTAAAGGGTGGTGATAGTGAAGAAGAGATCAAATTCGAAG
ATTGGACAATTGGTGAAATGGGTGGTTATCATGCATATCAACAACCAGTT
GAATCAGTTAAAGCAGCTTATTTTGGTAGATTTGCATCAAAAGCATTCTC
TACTAATCCAAACCCAGAAATTCATATTTGGGAATTAGAATCACATACAC
CAAAGTTACGTTTAGAAGATACCATTAAATTTTATATAGATAGTGAAATA
CCACAAGCAATAACAACAACAACAACAACAACAACAACAGCAATTGCTGC
ACCATTAAATACACCACAAGTTATAATAACATCACCAACTTCAGGAATTG
GTGCATTTAAATCACCGCCACTTACAACTACAATTTTATTGAAAGCCAGT
ACAAACAATGTTGGTGTCGGAACGGCATTAGCGGCATCATCATCGTCATT
GGCACATGAGGATATTATTAGTTGTTGTTTTAGTTTTGTTAGTTTAGATG
ATGGTAGCTATTCAGTTGCATTTGGGTATGGTAACCAAGTGAAAATCTTA
AATAAACCAG

Gap no gap
Contig length 1510
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 847465
End point 845972
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 5
Link to clone list U16316
List of clone(s)

est1=SHB305F,1,577
est2=VHN895F,511,1110
est3=AHJ417F,615,1288
est4=AHQ542F,771,1371
est5=VHC386F,905,1510
Translated Amino Acid sequence
TVGLLVMVQSLKXXFYIQNQNQTQITNASPVSRCYGHKSTIKKLAASKNSPYLSSLDYQN
NVIIWNSTDSSKIQSPNYLIDIGSFPSYYSMTWSPNQKFCFFSNRDGIFVYYIEISQENY
VKSSLLSIGMIEESTLEDDWIDEVHIVDPLNLIYHYNSMDFDKNKVNNDSSRRNGGGGGE
SSVLLPYQFFLIGLNKHSDKLYVWGVSVEKDFKYSSSSSPSILKSKLLATKEFERDSRIS
CICAAPKGIFDMTTINKMNKNQNEDFSDNDDDDNNDDNNNNNNNEKYNNGDRVVLTHPIC
ITGSIDGYVSVFGITPKISFVKGGDSEEEIKFEDWTIGEMGGYHAYQQPVESVKAAYFGR
FASKAFSTNPNPEIHIWELESHTPKLRLEDTIKFYIDSEIPQAITTTTTTTTTAIAAPLN
TPQVIITSPTSGIGAFKSPPLTTTILLKASTNNVGVGTALAASSSSLAHEDIISCCFSFV
SLDDGSYSVAFGYGNQVKILNKP


Translated Amino Acid sequence (All Frames)
Frame A:
TVGLLVMVQSLKXXFYIQNQNQTQITNASPVSRCYGHKSTIKKLAASKNSPYLSSLDYQN
NVIIWNSTDSSKIQSPNYLIDIGSFPSYYSMTWSPNQKFCFFSNRDGIFVYYIEISQENY
VKSSLLSIGMIEESTLEDDWIDEVHIVDPLNLIYHYNSMDFDKNKVNNDSSRRNGGGGGE
SSVLLPYQFFLIGLNKHSDKLYVWGVSVEKDFKYSSSSSPSILKSKLLATKEFERDSRIS
CICAAPKGIFDMTTINKMNKNQNEDFSDNDDDDNNDDNNNNNNNEKYNNGDRVVLTHPIC
ITGSIDGYVSVFGITPKISFVKGGDSEEEIKFEDWTIGEMGGYHAYQQPVESVKAAYFGR
FASKAFSTNPNPEIHIWELESHTPKLRLEDTIKFYIDSEIPQAITTTTTTTTTAIAAPLN
TPQVIITSPTSGIGAFKSPPLTTTILLKASTNNVGVGTALAASSSSLAHEDIISCCFSFV
SLDDGSYSVAFGYGNQVKILNKP


Frame B:
llayw*wcnllxkxfifkikiklklqmhhqyldvmvikvqlkswqhlkihhifhl*iiki
mllfgiqqiqvkfnhqii*lildhfhhiiq*hghqiksfvsfqiemvylyii*rlvkrim
lnhhcyqlv*lknqh*rmiglmkfi*lih*i*fiiiiqwiliriklittavdvmvvvvvk
vvfyyhtnsf*lv*iniqinymfgvlvlkrisnilhhplhqf*nqny*qqknlkgiqefl
vfvlhqkvfsi*qllik*ikikmkilvimmmtiimtiiiiiiimkstimeie*f*hiqfv
llvvlmvmyqylv*hqkyhl*rvvivkkrsnskigqlvkwvvimhinnqlnqlkqlilvd
lhqkhslliqtqkfifgn*nhihqsyv*kiplnfi*ivkyhkq*qqqqqqqqqqllhh*i
hhkl**hhqlqelvhlnhrhlqlqfy*kpvqtmlvserh*rhhhrhwhmrillvvvlvll
v*mmvaiqlhlgmvtk*ks*inq


Frame C:
cwptgngais*xxilysksksnsnykcitsi*mlws*kyn*kvgsi*kftisfifrlsk*
cyylefnrfk*nsitklfn*ywiisiilfndmvtkskvlflfk*rwyicilyrd*srelc
*iiivinwyd*rinirg*ld**ssys*sikfnlsl*fngf**e*s**rqq*t*wwwww*k
*cfitipilfnwfe*tfr*iiclgc*c*kgfqiffiilsinfkikiisnkri*kgfknfl
ylcctkryfrydny**ne*ksk*rf******r***r********kvq*wr*ssfntsnly
yw*y*wlcisiwyntkniickgw***rrdqirrldnw*ngwlscistts*is*sslfw*i
ciksily*skprnsylgiritytkvtfrryh*ilyr**nttsnnnnnnnnnnsncctiky
ttsynnitnfrnwci*itatynynfiesqykqcwcrngisgiiivigt*gyy*llf*fc*
fr*w*lfsciwvw*psenlk*t


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U16316-1 (Contig-U16316-1Q)
/CSM_Contig/Contig-U16316-1Q.Seq.d
(1510 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Conti... 1021 0.0
Contig-U14879-1 (Contig-U14879-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U15749-1 (Contig-U15749-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13918-1 (Contig-U13918-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U08694-1 (Contig-U08694-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U04902-1 (Contig-U04902-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U16427-1 (Contig-U16427-1Q) /CSM_Contig/Conti... 40 0.010
Contig-U16377-1 (Contig-U16377-1Q) /CSM_Contig/Conti... 40 0.010
Contig-U15698-1 (Contig-U15698-1Q) /CSM_Contig/Conti... 34 0.60

>Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Contig-U16316-1Q.Seq.d
Length = 1510

Score = 1021 bits (515), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtaatggtgcaatctcttaagnaagnattttatattcaaaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtaatggtgcaatctcttaagnaagnattttatattcaaaatcaa 60


Query: 61 aatcaaactcaaattacaaatgcatcaccagtatctagatgttatggtcataaaagtaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcaaactcaaattacaaatgcatcaccagtatctagatgttatggtcataaaagtaca 120


Query: 121 attaaaaagttggcagcatctaaaaattcaccatatctttcatctttagattatcaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaaaaagttggcagcatctaaaaattcaccatatctttcatctttagattatcaaaat 180


Query: 181 aatgttattatttggaattcaacagattcaagtaaaattcaatcaccaaattatttaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgttattatttggaattcaacagattcaagtaaaattcaatcaccaaattatttaatt 240


Query: 241 gatattggatcatttccatcatattattcaatgacatggtcaccaaatcaaaagttttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatattggatcatttccatcatattattcaatgacatggtcaccaaatcaaaagttttgt 300


Query: 301 ttcttttcaaatagagatggtatatttgtatattatatagagattagtcaagagaattat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcttttcaaatagagatggtatatttgtatattatatagagattagtcaagagaattat 360


Query: 361 gttaaatcatcattgttatcaattggtatgattgaagaatcaacattagaggatgattgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttaaatcatcattgttatcaattggtatgattgaagaatcaacattagaggatgattgg 420


Query: 421 attgatgaagttcatatagttgatccattaaatttaatttatcattataattcaatggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgatgaagttcatatagttgatccattaaatttaatttatcattataattcaatggat 480


Query: 481 tttgataagaataaagttaataacgacagcagtagacgtaa 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttgataagaataaagttaataacgacagcagtagacgtaa 521


Score = 712 bits (359), Expect = 0.0
Identities = 359/359 (100%)
Strand = Plus / Plus


Query: 853 gaaaagtacaataatggagatagagtagttttaacacatccaatttgtattactggtagt 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaaaagtacaataatggagatagagtagttttaacacatccaatttgtattactggtagt 912


Query: 913 attgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaaagggtggt 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 attgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaaagggtggt 972


Query: 973 gatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtggttatcat 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtggttatcat 1032


Query: 1033 gcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttgcatcaaaa 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttgcatcaaaa 1092


Query: 1093 gcattctctactaatccaaacccagaaattcatatttgggaattagaatcacatacacca 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 gcattctctactaatccaaacccagaaattcatatttgggaattagaatcacatacacca 1152


Query: 1153 aagttacgtttagaagataccattaaattttatatagatagtgaaataccacaagcaat 1211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 aagttacgtttagaagataccattaaattttatatagatagtgaaataccacaagcaat 1211


Score = 537 bits (271), Expect = e-152
Identities = 271/271 (100%)
Strand = Plus / Plus


Query: 1240 gcaattgctgcaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 gcaattgctgcaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 1299


Query: 1300 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 1359


Query: 1360 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 1419


Query: 1420 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 1479


Query: 1480 ggtaaccaagtgaaaatcttaaataaaccag 1510
|||||||||||||||||||||||||||||||
Sbjct: 1480 ggtaaccaagtgaaaatcttaaataaaccag 1510


Score = 517 bits (261), Expect = e-146
Identities = 261/261 (100%)
Strand = Plus / Plus


Query: 539 aaagtagtgttttattaccataccaattctttttaattggtttgaataaacattcagata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaagtagtgttttattaccataccaattctttttaattggtttgaataaacattcagata 598


Query: 599 aattatatgtttggggtgttagtgttgaaaaggatttcaaatattcttcatcatcctctc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aattatatgtttggggtgttagtgttgaaaaggatttcaaatattcttcatcatcctctc 658


Query: 659 catcaattttaaaatcaaaattattagcaacaaaagaatttgaaagggattcaagaattt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 catcaattttaaaatcaaaattattagcaacaaaagaatttgaaagggattcaagaattt 718


Query: 719 cttgtatttgtgctgcaccaaaaggtattttcgatatgacaactattaataaaatgaata 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cttgtatttgtgctgcaccaaaaggtattttcgatatgacaactattaataaaatgaata 778


Query: 779 aaaatcaaaatgaagatttta 799
|||||||||||||||||||||
Sbjct: 779 aaaatcaaaatgaagatttta 799


>Contig-U14879-1 (Contig-U14879-1Q) /CSM_Contig/Contig-U14879-1Q.Seq.d
Length = 538

Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1047 agttgaatcagttaaagcagct 1068
||||||||||||||||||||||
Sbjct: 274 agttgaatcagttaaagcagct 295


>Contig-U15749-1 (Contig-U15749-1Q) /CSM_Contig/Contig-U15749-1Q.Seq.d
Length = 1696

Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 49 attcaaaatcaaaatcaaactcaaa 73
||||||||||||||||||| |||||
Sbjct: 1179 attcaaaatcaaaatcaaaatcaaa 1203


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1253 tcaaaatcaaaatcaaaatcaaa 1275


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1187 tcaaaatcaaaatcaaaatcaaa 1209


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1223 tcaaaatcaaaatcaaaatcaaa 1245


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1199 tcaaaatcaaaatcaaaatcaaa 1221


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1217 tcaaaatcaaaatcaaaatcaaa 1239


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1193 tcaaaatcaaaatcaaaatcaaa 1215


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1259 tcaaaatcaaaatcaaaatcaaa 1281


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1211 tcaaaatcaaaatcaaaatcaaa 1233


Score = 38.2 bits (19), Expect = 0.039
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatcaaactcaaa 73
||||||||||||||||| |||||
Sbjct: 1205 tcaaaatcaaaatcaaaatcaaa 1227


Score = 30.2 bits (15), Expect = 9.4
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 55 aatcaaaatcaaactcaaa 73
||||||||||||| |||||
Sbjct: 1251 aatcaaaatcaaaatcaaa 1269


Score = 30.2 bits (15), Expect = 9.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 51 tcaaaatcaaaatca 65
|||||||||||||||
Sbjct: 1235 tcaaaatcaaaatca 1249


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,926
Number of Sequences: 8402
Number of extensions: 36926
Number of successful extensions: 5180
Number of sequences better than 10.0: 1137
length of query: 1510
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1494
effective length of database: 7,941,110
effective search space: 11864018340
effective search space used: 11864018340
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 3.27
Homology vs DNA
Query= Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Contig-U16316-1Q.Seq.d
(1510 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ419371) Dictyostelium discoideum cDNA clone:ddv35l21, 5' ... 595 0.0 2
(BJ392031) Dictyostelium discoideum cDNA clone:dds26j01, 5' ... 1021 0.0 2
(BJ335117) Dictyostelium discoideum cDNA clone:dda49b06, 5' ... 692 0.0 3
(BJ324584) Dictyostelium discoideum cDNA clone:dda7c03, 5' e... 589 0.0 2
(BJ339133) Dictyostelium discoideum cDNA clone:dda64c11, 5' ... 684 0.0 2
(BJ426425) Dictyostelium discoideum cDNA clone:ddv58n24, 5' ... 500 0.0 2
(AP001589) Homo sapiens genomic DNA, chromosome 18q22 clone:... 36 0.004 12
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 38 0.009 12
(BX901883) Zebrafish DNA sequence from clone DKEY-151M15 in ... 38 0.010 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.015 15
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.029 13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.047 17
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 38 0.066 20
(EK232571) 1095460185266 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.11 4
(BJ389015) Dictyostelium discoideum cDNA clone:dds17k04, 5' ... 36 0.12 3
(EK280664) 1095462293733 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.13 4
(BH211302) Sm1-40B13.TF Sm1 Schistosoma mansoni genomic clon... 46 0.19 2
(BX548049) Zebrafish DNA sequence from clone DKEY-217J16 in ... 46 0.21 5
(AC005245) Homo sapiens chromosome 17, clone hRPK.642_C_21, ... 50 0.25 1
(AL325905) Tetraodon nigroviridis genome survey sequence T3 ... 50 0.25 1
(BD099498) Novel genes cloned in humanneuroblastoma and frag... 40 0.33 2
(BD019560) Novel gene and novel gene fragment cloned in huma... 40 0.33 2
(AC020194) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 0.37 6
(EJ882940) 1093018404876 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.38 2
(EJ862592) 1093018216030 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.42 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.50 15
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 38 0.53 9
(CJ452997) Macaca fascicularis mRNA, clone: QflA-18676, 5' e... 34 0.69 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.69 15
(BJ387843) Dictyostelium discoideum cDNA clone:dds5j11, 5' e... 36 0.73 2
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 0.75 11
(AJ010592) Guillardia theta DNA for complete sequence of nuc... 38 0.83 11
(EK437879) 1095521102432 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1
(EK430908) 1095516150955 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1
(DE172519) Bombyx mori genomic DNA, Fosmid clone:RO0322-A03_R. 48 0.97 1
(CT365575) Sus scrofa genomic clone CH242-457K24, genomic su... 48 0.97 1
(CL584140) OB__Ba0076P12.r OB__Ba Oryza brachyantha genomic ... 48 0.97 1
(CL544473) OB__Ba0072L12.f OB__Ba Oryza brachyantha genomic ... 48 0.97 1
(EL447658) CHTM26399.b1_M24.ab1 CHT(LMS) Jerusalem artichoke... 48 0.97 1
(CJ444184) Macaca fascicularis mRNA, clone: QccE-21772, 5' e... 48 0.97 1
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 1.1 15
(BX206202) Danio rerio genomic clone DKEY-240A14, genomic su... 46 1.1 2
(AC183492) Brassica oleracea Contig G, complete sequence. 38 1.1 9
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 1.2 12
(AR556139) Sequence 11270 from patent US 6747137. 46 1.4 2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 1.4 16
(CW955204) TcB45.2_D01_SP6 Tribolium BAC library Tribolium c... 40 1.4 2
(EK045312) 1092959547366 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.5 4
(AC140551) Medicago truncatula clone mth2-80i8, complete seq... 36 1.6 7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 1.8 13
(BX005291) Zebrafish DNA sequence from clone CH211-186F16 in... 46 1.8 4
(AM463813) Vitis vinifera, whole genome shotgun sequence, co... 44 2.2 2
(Z52408) H.sapiens (D22S1144) DNA segment containing (CA) re... 36 2.2 2
(CU469501) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.7 10
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 2.7 21
(BX511250) Zebrafish DNA sequence from clone CH211-57K11 in ... 38 3.0 10
(CJ455516) Macaca fascicularis mRNA, clone: QflA-21304, 5' e... 34 3.1 4
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 3.1 6
(AC010888) Homo sapiens BAC clone RP11-418N16 from 2, comple... 38 3.1 12
(EK418066) 1095515481155 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.4 3
(AC025807) Homo sapiens clone RP11-657G2, WORKING DRAFT SEQU... 40 3.5 4
(ER329742) 1092344247601 Global-Ocean-Sampling_GS-34-01-01-1... 34 3.8 3
(CU468916) Zebrafish DNA sequence from clone CH211-22C18 in ... 46 3.8 1
(CU457774) Zebrafish DNA sequence from clone CH73-52L15 in l... 46 3.8 1
(CU302293) Zebrafish DNA sequence from clone DKEY-178I20 in ... 46 3.8 1
(CR396586) Zebrafish DNA sequence from clone DKEY-184A18 in ... 46 3.8 1
(CR383669) Zebrafish DNA sequence from clone DKEY-25O1 in li... 46 3.8 1
(CR352290) Zebrafish DNA sequence from clone DKEY-107G12 in ... 46 3.8 1
(BX901925) Zebrafish DNA sequence from clone DKEYP-86C11 in ... 46 3.8 1
(BX897657) Zebrafish DNA sequence from clone DKEYP-84C2. 46 3.8 1
(BX465187) Zebrafish DNA sequence from clone DKEYP-6C7 in li... 46 3.8 1
(BX296554) Zebrafish DNA sequence from clone DKEYP-30G1 in l... 46 3.8 1
(BX248410) Zebrafish DNA sequence from clone DKEY-65M5 in li... 46 3.8 1
(BX004803) Zebrafish DNA sequence from clone CH211-119C20 in... 46 3.8 1
(BX001030) Zebrafish DNA sequence from clone CH211-234P6 in ... 46 3.8 1
(AL954834) Zebrafish DNA sequence from clone CH211-286D20. 46 3.8 1
(AC119855) Mus musculus chromosome 3, clone RP23-243H19, com... 46 3.8 1
(AC102561) Mus musculus chromosome 7, clone RP23-201O19, com... 46 3.8 1
(AC225609) Callithrix jacchus BAC clone CH259-161K20 from ch... 46 3.8 1
(X95099) C.albicans mRNA for neutral trehalase. 46 3.8 1
(EU024868) Fragaria vesca subsp. americana clone fosmid 73I2... 46 3.8 1
(CU024879) M.truncatula DNA sequence from clone MTH2-70F3 on... 46 3.8 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.8 1
(AM467147) Vitis vinifera, whole genome shotgun sequence, co... 46 3.8 1
(AL606989) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 3.8 1
(AC174375) Medicago truncatula chromosome 6 clone mth2-56h19... 46 3.8 1
(AC156827) Medicago truncatula chromosome 6 clone mth2-15c17... 46 3.8 1
(CS604481) Sequence 3467 from Patent WO2007039234. 46 3.8 1
(CS603657) Sequence 2643 from Patent WO2007039234. 46 3.8 1
(BD099767) Novel genes cloned in humanneuroblastoma and frag... 46 3.8 1
(BD019829) Novel gene and novel gene fragment cloned in huma... 46 3.8 1
(AL031633) Caenorhabditis elegans YAC Y39A1A. 46 3.8 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 46 3.8 1
(AC159992) Mus musculus chromosome 7 clone RP23-305K13 map 7... 46 3.8 1
(CR925702) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.8 1
(AC170888) Mus musculus chromosome 12 clone RP24-72M20, WORK... 46 3.8 1
(AC170180) Mus musculus chromosome 7 clone RP24-142A13 map 7... 46 3.8 1
(AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK... 46 3.8 1
(AC167542) Mus musculus chromosome 7 clone RP23-108F4 map 7,... 46 3.8 1
(AC163334) Mus musculus chromosome 7 clone RP23-458E6 map 7,... 46 3.8 1
(AG756892) Macaca fuscata fuscata DNA, clone: MSB2-224D24_R,... 46 3.8 1
(B21574) T19G5-Sp6 TAMU Arabidopsis thaliana genomic clone T... 46 3.8 1
(BX167202) Danio rerio genomic clone DKEY-123A20, genomic su... 46 3.8 1
(EG915339) EST_ssal_evf_54701 ssalevf mixed_tissue Salmo sal... 46 3.8 1
(EE080216) S2B22093 Buds (VvS2) Vitis vinifera cDNA clone S2... 46 3.8 1
(EE067391) C2B06627 Buds/little clusters (VvC2) Vitis vinife... 46 3.8 1
(EC996314) WIN117.C21_O01 Muscat Hamburg pre-veraison berry ... 46 3.8 1
(EC992419) WIN1145.C21_G13 Muscat Hamburg pre-veraison berry... 46 3.8 1
(EC992222) WIN1144.C21_N13 Muscat Hamburg pre-veraison berry... 46 3.8 1
(EC979714) WIN112.C21_L10 Muscat Hamburg pre-veraison berry ... 46 3.8 1
(EC942862) WIN0527.C21_B04 Cab Sauv flower, leaf and root no... 46 3.8 1
(EC935917) WIN0510.C21_M23 Cab Sauv flower, leaf and root no... 46 3.8 1
(EC926645) WIN0212.TB24_P14 Cab Sauv flower, leaf and root n... 46 3.8 1
(EB667323) 6X_JR_D09 pAPO Cenchrus ciliaris cDNA 5', mRNA se... 46 3.8 1
(DW165947) CLVY446.b1_K15.ab1 CLV(XYZ) lettuce virosa Lactuc... 46 3.8 1
(DT518047) WS02436.B21_A19 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1
(DT513390) WS02421.B21_O19 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1
(DT486158) WS02530.B21_D04 PT-MB-N-A-15 Populus trichocarpa ... 46 3.8 1
(DT480874) WS02530.BR_D04 PT-MB-N-A-15 Populus trichocarpa c... 46 3.8 1
(DN499727) T082A09.5pR Populus shoot meristem cDNA library P... 46 3.8 1
(DK450875) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK448794) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK445171) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK445053) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK444584) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK442874) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK416910) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK410595) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK407447) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK406405) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK405238) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK404162) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK403893) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK401386) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK400620) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK398820) Drosophila simulans mRNA, third instar larvae ful... 46 3.8 1
(DK373545) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK372480) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK367791) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK365087) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK363309) Drosophila simulans mRNA, adult full-length cDNA ... 46 3.8 1
(DK341538) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK339959) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK339231) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK338941) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK336372) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK336298) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK335328) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK334615) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK333807) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK330359) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK329024) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK328283) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK327878) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK326731) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK324924) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK323583) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(DK304529) Drosophila sechellia mRNA, adult full-length cDNA... 46 3.8 1
(CV275647) WS0177.B21_C18 PTxD-NR-A-8 Populus trichocarpa x ... 46 3.8 1
(CN518799) GQ0104.B3_P17 GQ010 Populus trichocarpa x Populus... 46 3.8 1
(CF543007) S014680-024-030-H12-SP6 MPIZ-ADIS-024-leaf Beta v... 46 3.8 1
(CF207460) CAB20001_IVa_Ra_B12 Cabernet Sauvignon Flower blo... 46 3.8 1
(BU836045) T082A09 Populus apical shoot cDNA library Populus... 46 3.8 1
(AY661659) Sorghum bicolor clone BAC 75D9, complete sequence. 36 4.0 6
(ER313203) 1092343820990 Global-Ocean-Sampling_GS-34-01-01-1... 34 4.1 3
(ER479679) 1093015256487 Global-Ocean-Sampling_GS-35-01-01-1... 40 4.1 3
(EJ504557) 1095403678094 Global-Ocean-Sampling_GS-28-01-01-1... 38 4.2 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 4.4 9
(EA743654) Sequence 15100 from patent US 7368527. 42 4.4 4
(EJ792318) 1093017383192 Global-Ocean-Sampling_GS-30-02-01-1... 38 4.6 3
(EJ901009) 1093018489876 Global-Ocean-Sampling_GS-30-02-01-1... 38 4.8 3
(BJ424732) Dictyostelium discoideum cDNA clone:ddv53k10, 5' ... 34 5.1 3
(AF476931) Vaucheria dichotoma ribulose-1,5-bisphosphate car... 32 5.3 3
(FI281666) AdH1029-CPY2-G20TF AdH1 Arachis duranensis genomi... 38 5.5 2
(AP009984) Lotus japonicus genomic DNA, clone: LjT10D02, TM0... 44 5.6 5
(BJ363323) Dictyostelium discoideum cDNA clone:ddc26g05, 5' ... 36 5.7 3
(ER333282) 1092344283328 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 2
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 6.0 22
(BX323460) Zebrafish DNA sequence from clone DKEYP-47G11 in ... 44 6.1 4
(CP000993) Borrelia recurrentis A1, complete genome. 40 6.4 21
(CU914708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.6 4
(AC185446) Zea mays chromosome unknown clone CH201-346O21; Z... 32 6.9 2
(AC145261) Zea mays clone ZMMBBc0001A01, *** SEQUENCING IN P... 32 7.0 2
(AC194345) Zea mays chromosome 4 clone CH201-1A1; ZMMBBc0001... 32 7.0 2
(CS468878) Sequence 69 from Patent EP1748080. 36 7.0 12
(CS419355) Sequence 69 from Patent WO2006094836. 36 7.0 12
(AC178914) Strongylocentrotus purpuratus clone R3-3115C9, WO... 32 7.1 2
(EF647601) Solanum lycopersicum chromosome 9 clone C09HBa009... 36 7.2 5
(BJ441175) Dictyostelium discoideum cDNA clone:ddv45l22, 3' ... 42 7.2 2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 34 7.5 9
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 8.9 11
(AG038842) Pan troglodytes DNA, clone: PTB-015M07.R. 34 9.4 2
(BJ416207) Dictyostelium discoideum cDNA clone:ddv25f11, 5' ... 42 9.5 2
(AG708306) Macaca fuscata fuscata DNA, clone: MSB2-151F05_R,... 34 9.6 2
(AV407419) Lotus japonicus cDNA clone:MWL023a11_r, 5' end. 42 9.6 2
(AC007727) Arabidopsis thaliana chromosome 1 BAC F8K7 sequen... 32 9.8 9
(AW720053) LjNEST13a4r Lotus japonicus nodule library 5 and ... 42 9.8 2
(BJ389124) Dictyostelium discoideum cDNA clone:dds17h16, 5' ... 36 9.8 2

>(BJ419371) Dictyostelium discoideum cDNA clone:ddv35l21, 5' end,
single read.
Length = 606

Score = 595 bits (300), Expect(2) = 0.0
Identities = 305/307 (99%)
Strand = Plus / Plus


Query: 905 ctggtagtattgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaa 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggtagtattgatggttatgtatcagtatttggtataacaccaaaaatatcatttgtaa 60


Query: 965 agggtggtgatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtg 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agggtggtgatagtgaagaagagatcaaattcgaagattggacaattggtgaaatgggtg 120


Query: 1025 gttatcatgcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttg 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttatcatgcatatcaacaaccagttgaatcagttaaagcagcttattttggtagatttg 180


Query: 1085 catcaaaagcattctctactaatccaaacccagaaattcatatttgggaattagaatcac 1144
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 181 catcaaaagcattctctactaatccaaatccagaaattcatatttgggaattagaatcac 240


Query: 1145 atacaccaaagttacgtttagaagataccattaaattttatatagatagtgaaataccac 1204
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacaccaaagttacgnttagaagataccattaaattttatatagatagtgaaataccac 300


Query: 1205 aagcaat 1211
|||||||
Sbjct: 301 aagcaat 307

Score = 529 bits (267), Expect(2) = 0.0
Identities = 270/271 (99%)
Strand = Plus / Plus


Query: 1240 gcaattgctgcaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 1299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcaattgctacaccattaaatacaccacaagttataataacatcaccaacttcaggaatt 395


Query: 1300 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggtgcatttaaatcaccgccacttacaactacaattttattgaaagccagtacaaacaat 455


Query: 1360 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gttggtgtcggaacggcattagcggcatcatcatcgtcattggcacatgaggatattatt 515


Query: 1420 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agttgttgttttagttttgttagtttagatgatggtagctattcagttgcatttgggtat 575


Query: 1480 ggtaaccaagtgaaaatcttaaataaaccag 1510
|||||||||||||||||||||||||||||||
Sbjct: 576 ggtaaccaagtgaaaatcttaaataaaccag 606

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,821,077,584
Number of extensions: 112920724
Number of successful extensions: 10051926
Number of sequences better than 10.0: 200
Length of query: 1510
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1486
Effective length of database: 96,409,374,237
Effective search space: 143264330116182
Effective search space used: 143264330116182
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.27
Homology vs Protein
Query= Contig-U16316-1 (Contig-U16316-1Q) /CSM_Contig/Contig-U16316-1Q.Seq.d
(1510 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

S19487(S19487;S26657)hypothetical protein YCR072c - yeast (Sacch... 39 0.66
AM989989_35(AM989989|pid:none) Zygosaccharomyces rouxii strain C... 39 0.66
CU928165_278(CU928165|pid:none) Kluyveromyces thermotolerans str... 38 0.86
(P25382) RecName: Full=WD repeat-containing protein YCR072C; &A... 38 0.86
CR548612_182(CR548612|pid:none) Paramecium tetraurelia macronucl... 37 1.5
AM269969_6(AM269969|pid:none) Aspergillus niger contig An01c0220... 37 1.5
AE016818_604(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 37 1.9
AM920437_2228(AM920437|pid:none) Penicillium chrysogenum Wiscons... 37 1.9
AP007151_775(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 37 2.5
FM992693_111(FM992693|pid:none) Candida dubliniensis CD36 chromo... 36 3.3
AL356324_19(AL356324|pid:none) Neurospora crassa DNA linkage gro... 36 3.3
(Q93847) RecName: Full=Uncharacterized WD repeat-containing prot... 36 4.3
AP007161_833(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 35 5.6
CU633438_612(CU633438|pid:none) Podospora anserina genomic DNA c... 35 5.6
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso... 35 5.6
(Q54J37) RecName: Full=Striatin-3 homolog; 35 9.5
AC117075_70(AC117075|pid:none) Dictyostelium discoideum chromoso... 35 9.5
AL844505_133(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 9.5
AC117076_61(AC117076|pid:none) Dictyostelium discoideum chromoso... 35 9.5

>S19487(S19487;S26657)hypothetical protein YCR072c - yeast
(Saccharomyces cerevisiae)
Length = 515

Score = 38.5 bits (88), Expect = 0.66
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +1

Query: 88 PVSRCYGHKSTIKKLAASKNSPYLSSLDYQNNVIIWNSTDSSKIQSPNYLIDIGSFPSYY 267
P++R GH+ + +A S + Y+ S + N++ +W+ D I + G S Y
Sbjct: 394 PIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFR-----GHIASVY 448

Query: 268 SMTWSPNQKFCFFSNRD 318
+ WS + + ++D
Sbjct: 449 QVAWSSDCRLLVSCSKD 465

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,934,643,528
Number of extensions: 33573971
Number of successful extensions: 83011
Number of sequences better than 10.0: 19
Number of HSP's gapped: 82936
Number of HSP's successfully gapped: 19
Length of query: 503
Length of database: 1,061,185,681
Length adjustment: 133
Effective length of query: 370
Effective length of database: 626,482,097
Effective search space: 231798375890
Effective search space used: 231798375890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.95 gvh: 0.46 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
24.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for Contig-U16316-1 is mit

VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0